Psyllid ID: psy10228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccEEEcccHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHccccEEEEccHHHHHHHHHcccccEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccccccccccccccEEEEccEEEEEEccccccccccHHHHHccccccccEEccccccccccccccccEEEEccHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHcccccEEEcccccc
Coil and Loop (DISEMBL)
mdrhdmyrpmsrlrnlntstlerkkknfsfsrkfpfmkskddksedgsdqepfmlcytqddpttedttRARREyevdgrdyhfVSSREQMEKDIQNHLFIEagqyndnlygtsVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQeqsgpsiwvpskdpl
Flexible Loop (DISEMBL)
mdrhdmyrpmsrlrnlntstlerkkknfsfsrkfpfmkskddksedgsdqepfmlcytqddpttedttrarreyevDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIqeqsgpsiwvpskdpl
Low Complexity Region (SEG)
MDRHDMYRPMSRLRNLNTSTLErkkknfsfsrkfpfMkskddksedgsdQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL
Disordered region (IsUnstruct)
********************************************************************************YHFV********DIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPK******************************FGEFFTAVVQGDMPEDIYQKVKEVI****************
Disordered Region (DISOPRED)
****************************************************FMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSV************************MEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKD**
Disordered Region (DISEMBL)
MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMK***********QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL
Disordered Region (DISPRO)
****DMYR*M**************KKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
P31007	970	Disks large 1 tumor suppr	yes	N/A	0.92	0.213	0.666	7e-97
Q5PYH7	881	Disks large homolog 2 OS=	yes	N/A	0.906	0.231	0.610	3e-80
Q15700	870	Disks large homolog 2 OS=	yes	N/A	0.906	0.234	0.609	7e-77
Q91XM9	852	Disks large homolog 2 OS=	no	N/A	0.706	0.186	0.798	2e-72
Q63622	852	Disks large homolog 2 OS=	yes	N/A	0.706	0.186	0.798	2e-72
Q5PYH6	873	Disks large homolog 1 OS=	no	N/A	0.92	0.237	0.550	5e-72
Q811D0	905	Disks large homolog 1 OS=	no	N/A	0.706	0.175	0.767	4e-71
Q12959	904	Disks large homolog 1 OS=	no	N/A	0.706	0.175	0.761	3e-70
Q28C55	927	Disks large homolog 1 OS=	yes	N/A	0.902	0.218	0.537	8e-70
Q62696	911	Disks large homolog 1 OS=	no	N/A	0.706	0.174	0.748	1e-69

>sp|P31007|DLG1_DROME Disks large 1 tumor suppressor protein OS=Drosophila melanogaster GN=dlg1 PE=1 SV=2

 Score =  353 bits (905), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 192/258 (74%), Gaps = 51/258 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNF+FSRKFPFMKS+D+K+EDGSDQEPFMLCYTQDD   E             
Sbjct: 713 STLDRKKKNFTFSRKFPFMKSRDEKNEDGSDQEPFMLCYTQDDANAEGASEENVLSYEAV 772

Query: 67  ---------------------------------------TTRARREYEVDGRDYHFVSSR 87
                                                  TTR +REYEVDGRDYHFVSSR
Sbjct: 773 QRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 832

Query: 88  EQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPV 147
           EQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA LYPV
Sbjct: 833 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPV 892

Query: 148 AIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKE 207
           A+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFGE+FT VVQGD  E+IY KVK 
Sbjct: 893 AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKS 952

Query: 208 VIQEQSGPSIWVPSKDPL 225
           +I  QSGP+IWVPSK+ L
Sbjct: 953 MIWSQSGPTIWVPSKESL 970

During embryonic development, some isoforms are essential for proper neuronal differentiation and organization. Required for cell polarity; maintenance of apicobasal polarity. Plays a critical role at septate junctions in cellular growth control during larval development. The presence of a guanylate kinase domain suggests involvement in cellular adhesion as well as signal transduction to control cellular proliferation.
Drosophila melanogaster (taxid: 7227)

>sp|Q5PYH7|DLG2_DANRE Disks large homolog 2 OS=Danio rerio GN=dlg2 PE=2 SV=1

 Score =  297 bits (761), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/249 (61%), Positives = 178/249 (71%), Gaps = 45/249 (18%)

Query: 22  ERKKKNFSFSRKFPFMKSKDDKSEDGSD----QEPFMLCY-------------------- 57
           E+++KNF FSRKFPF K+KD   +DGSD    QE  +L Y                    
Sbjct: 633 EKRRKNFIFSRKFPFYKNKDADEQDGSDSERSQEELILSYEPVIRQEINYARPVIILGPM 692

Query: 58  ---TQDDPTTE------------------DTTRARREYEVDGRDYHFVSSREQMEKDIQN 96
                DD  +E                  DTTR +R+YEVDGRDYHF++SREQMEKDIQ 
Sbjct: 693 KDRINDDLISEFPDKFGSCVPPANSSDQEDTTRPKRDYEVDGRDYHFMASREQMEKDIQE 752

Query: 97  HLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSV 156
           H FIEAGQYNDNLYGTSV SV+ VAE+GKHCILDVSGNAIKRLQVA LYP+AIFIKP+S+
Sbjct: 753 HKFIEAGQYNDNLYGTSVQSVKYVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSI 812

Query: 157 ESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPS 216
           ES+MEMNKR+TEEQAKK YDR+MK+EQEFGE+FTA+VQGD  EDIY + K VI+EQSGP 
Sbjct: 813 ESLMEMNKRLTEEQAKKTYDRAMKLEQEFGEYFTALVQGDTLEDIYNQCKMVIEEQSGPY 872

Query: 217 IWVPSKDPL 225
           IW+PSK+ L
Sbjct: 873 IWIPSKEKL 881

May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q15700|DLG2_HUMAN Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3

 Score =  286 bits (732), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 174/241 (72%), Gaps = 37/241 (15%)

Query: 22  ERKKKNFSFSRKFPFMKSKDDKSEDGSD----QEPFMLCY-------------------- 57
           +++KK+F FSRKFPF K+K+   ++ SD    QE  +L Y                    
Sbjct: 630 DKRKKSFIFSRKFPFYKNKEQSEQETSDPERGQEDLILSYEPVTRQEINYTRPVIILGPM 689

Query: 58  ---TQDDPTTE----------DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104
                DD  +E           TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQ
Sbjct: 690 KDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQ 749

Query: 105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNK 164
           YNDNLYGTSV SVR VAE+GKHCILDVSGNAIKRLQVA LYP+AIFIKP+S+E +MEMNK
Sbjct: 750 YNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNK 809

Query: 165 RMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDP 224
           R+TEEQAKK YDR++K+EQEFGE+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ 
Sbjct: 810 RLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEK 869

Query: 225 L 225
           L
Sbjct: 870 L 870

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q91XM9|DLG2_MOUSE Disks large homolog 2 OS=Mus musculus GN=Dlg2 PE=1 SV=2

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct: 694 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 753

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct: 754 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 813

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct: 814 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 852

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q63622|DLG2_RAT Disks large homolog 2 OS=Rattus norvegicus GN=Dlg2 PE=1 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct: 694 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 753

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct: 754 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 813

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct: 814 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 852

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q5PYH6|DLG1_DANRE Disks large homolog 1 OS=Danio rerio GN=dlg1 PE=2 SV=2

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 142/258 (55%), Positives = 174/258 (67%), Gaps = 51/258 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSD------------------QEPFMLCY--- 57
           ++L  K++   FSRKF F K+KD   +D SD                  QE ++L Y   
Sbjct: 616 ASLNDKRRKTLFSRKFLFSKNKDSGEQDTSDVDQHVTSNASDSESSFRGQEDYVLSYETV 675

Query: 58  --------------------TQDDPTTE----------DTTRARREYEVDGRDYHFVSSR 87
                                 DD  +E           TTR +R+YEVDGRDYHFV+SR
Sbjct: 676 TQQEVSYSRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVNSR 735

Query: 88  EQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPV 147
           EQMEKDIQ+H FIEAGQYN++LYGTSV SVR+VAEKGKHCILDVSGNAIKRLQ+A LYP+
Sbjct: 736 EQMEKDIQDHKFIEAGQYNNHLYGTSVQSVREVAEKGKHCILDVSGNAIKRLQLAQLYPI 795

Query: 148 AIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKE 207
           A+FIKPKSVE+I+EMNKR+ EEQ +K YDR+MK+EQEF E FTA+VQGD  E+IY +VK+
Sbjct: 796 AVFIKPKSVENILEMNKRLMEEQGRKTYDRAMKLEQEFLEHFTAIVQGDTLEEIYNQVKQ 855

Query: 208 VIQEQSGPSIWVPSKDPL 225
           +I+EQSGP IWVP K+ L
Sbjct: 856 IIEEQSGPFIWVPVKEKL 873

Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation (By similarity). May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus GN=Dlg1 PE=1 SV=1

 Score =  267 bits (682), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 145/159 (91%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR VAEKGKH
Sbjct: 747 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKH 806

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+TEEQA+K ++R+MK+EQEF 
Sbjct: 807 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFT 866

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E FTA+VQGD  EDIY +VK++I+EQSGP IWVP+K+ L
Sbjct: 867 EHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL 905

Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. Regulates the excitability of cardiac myocytes by modulating the functional expression of Kv4 channels (By similarity). Functional regulator of Kv1.5 channel (By similarity). May play a role in adherens junction assembly, signal transduction, cell proliferation, synaptogenesis and lymphocyte activation.

Mus musculus (taxid: 10090)

>sp|Q12959|DLG1_HUMAN Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 145/159 (91%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR+VAEKGKH
Sbjct: 746 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVREVAEKGKH 805

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+TEEQA+K ++R+MK+EQEF 
Sbjct: 806 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFT 865

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E FTA+VQGD  EDIY +VK++I+EQSG  IWVP+K+ L
Sbjct: 866 EHFTAIVQGDTLEDIYNQVKQIIEEQSGSYIWVPAKEKL 904

Essential multidomain scaffolding protein required for normal development (By similarity). Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction, cell proliferation, synaptogenesis and lymphocyte activation. Regulates the excitability of cardiac myocytes by modulating the functional expression of Kv4 channels. Functional regulator of Kv1.5 channel.

Homo sapiens (taxid: 9606)

>sp|Q28C55|DLG1_XENTR Disks large homolog 1 OS=Xenopus tropicalis GN=dlg1 PE=2 SV=1

 Score =  263 bits (671), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 137/255 (53%), Positives = 173/255 (67%), Gaps = 52/255 (20%)

Query: 22  ERKKKNFSFSRKFPFMKSKDDKSEDGSD------------------QEPFMLCY------ 57
           +++KKN  FSRKFPF K+KD    + SD                  QE ++L Y      
Sbjct: 674 DKRKKNL-FSRKFPFYKNKDQSEMETSDVDQHVTSNASDSESSYRGQEEYVLSYEPVNQQ 732

Query: 58  -----------------TQDDPTTE----------DTTRARREYEVDGRDYHFVSSREQM 90
                              DD  +E           TTR +R+YE+DGRDYHFV+SREQM
Sbjct: 733 EVNYSRPVIILGPTKDRVNDDLISEFPEKFGSCVPHTTRPKRDYEIDGRDYHFVTSREQM 792

Query: 91  EKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIF 150
           EKDIQ+H FIEAGQYN +LYGTSV SV++VAE+GKHCILDVSGNAIKRLQ+A LYP+AIF
Sbjct: 793 EKDIQDHRFIEAGQYNSHLYGTSVQSVKEVAERGKHCILDVSGNAIKRLQIAQLYPIAIF 852

Query: 151 IKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQ 210
           IKPKSVE+I+EM+KR+TEEQ +K Y+R+MK+EQEF E FTA+VQGD  E+IY ++K++I+
Sbjct: 853 IKPKSVENIIEMSKRVTEEQGRKTYERAMKLEQEFTEHFTAIVQGDTLEEIYNQIKQIIE 912

Query: 211 EQSGPSIWVPSKDPL 225
           EQS   IWVP+K+ L
Sbjct: 913 EQSSTFIWVPAKEKL 927

Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation.

Xenopus tropicalis (taxid: 8364)

>sp|Q62696|DLG1_RAT Disks large homolog 1 OS=Rattus norvegicus GN=Dlg1 PE=1 SV=1

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 145/159 (91%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR VAEKGKH
Sbjct: 753 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKH 812

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+T+EQA+K ++R++++EQEF 
Sbjct: 813 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFERAVRLEQEFT 872

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E FTA+VQGD  EDIY +VK++I+EQSGP IWVP+K+ L
Sbjct: 873 EHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL 911

Essential multidomain scaffolding protein required for normal development (By similarity). Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. Regulates the excitability of cardiac myocytes by modulating the functional expression of Kv4 channels. Functional regulator of Kv1.5 channel (By similarity). May play a role in adherens junction assembly, signal transduction, cell proliferation, synaptogenesis and lymphocyte activation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
340722459	754	PREDICTED: disks large 1 tumor suppresso	0.911	0.271	0.713	1e-100
333033759	882	discs large 1 [Gryllus bimaculatus]	0.92	0.234	0.715	1e-100
189234387	729	PREDICTED: similar to discs large 1 CG17	0.92	0.283	0.700	4e-98
170046729	861	conserved hypothetical protein [Culex qu	0.924	0.241	0.677	2e-95
403182343	948	AAEL016988-PA [Aedes aegypti]	0.92	0.218	0.675	3e-95
45554813	970	discs large 1, isoform B [Drosophila mel	0.92	0.213	0.666	4e-95
45554791	911	discs large 1, isoform H [Drosophila mel	0.92	0.227	0.666	6e-95
161077752	911	discs large 1, isoform K [Drosophila mel	0.92	0.227	0.666	8e-95
270001944	512	hypothetical protein TcasGA2_TC000855 [T	0.92	0.404	0.650	3e-93
45554804	975	discs large 1, isoform G [Drosophila mel	0.92	0.212	0.607	1e-90

>gi|340722459|ref|XP_003399623.1| PREDICTED: disks large 1 tumor suppressor protein-like [Bombus terrestris] gi|350416652|ref|XP_003491037.1| PREDICTED: disks large 1 tumor suppressor protein-like isoform 1 [Bombus impatiens] gi|350416654|ref|XP_003491038.1| PREDICTED: disks large 1 tumor suppressor protein-like isoform 2 [Bombus impatiens]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 196/255 (76%), Gaps = 50/255 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDD  TE             
Sbjct: 497 STLDRKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDTNTEGSEENVLSYEAVQ 556

Query: 67  --------------------------------------TTRARREYEVDGRDYHFVSSRE 88
                                                 TTR+RREYEVDGRDYHFV+SRE
Sbjct: 557 QLTIQYTRPVIILGPLKDRINDDLISEFPDKFGSCVPHTTRSRREYEVDGRDYHFVASRE 616

Query: 89  QMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVA 148
           QME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA LYP+A
Sbjct: 617 QMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPIA 676

Query: 149 IFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
           IFIKPKSVES+MEMNKRMTEEQAKK Y+R++KMEQEFGE+FTAVVQGD PE+IY KVKEV
Sbjct: 677 IFIKPKSVESVMEMNKRMTEEQAKKTYERALKMEQEFGEYFTAVVQGDTPEEIYVKVKEV 736

Query: 209 IQEQSGPSIWVPSKD 223
           I EQSGP+IWVP +D
Sbjct: 737 IAEQSGPNIWVPCRD 751

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|333033759|dbj|BAK23256.1| discs large 1 [Gryllus bimaculatus]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/257 (71%), Positives = 198/257 (77%), Gaps = 50/257 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDD  TE             
Sbjct: 626 STLDRKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDTHTEGAEETVLSYEAVQ 685

Query: 67  --------------------------------------TTRARREYEVDGRDYHFVSSRE 88
                                                 TTR +REYEVDGRDYHFV+SRE
Sbjct: 686 QMQIQYTRPVIILGPLKDRVNDDLISEFPDKFGSCVPHTTRPKREYEVDGRDYHFVASRE 745

Query: 89  QMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVA 148
           QME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA L+PVA
Sbjct: 746 QMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPVA 805

Query: 149 IFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
           IFIKPKS++SIMEMNKRMTEEQAKK ++R+MKMEQEFGE+FTAVVQGD PEDIY KVKEV
Sbjct: 806 IFIKPKSIDSIMEMNKRMTEEQAKKTFERAMKMEQEFGEYFTAVVQGDTPEDIYMKVKEV 865

Query: 209 IQEQSGPSIWVPSKDPL 225
           IQEQ+GP+IWVPSKD L
Sbjct: 866 IQEQAGPTIWVPSKDQL 882

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234387|ref|XP_001815997.1| PREDICTED: similar to discs large 1 CG1725-PK [Tribolium castaneum]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 180/257 (70%), Positives = 197/257 (76%), Gaps = 50/257 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQ+D   E             
Sbjct: 473 STLDRKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQEDANAEGNEENVLSYEPVQ 532

Query: 67  --------------------------------------TTRARREYEVDGRDYHFVSSRE 88
                                                 TTR +REYEVD RDYHFVSSRE
Sbjct: 533 QMAINYTRPVIILGPLKDRINDDLISEFPDKFGSCVPHTTRPKREYEVDARDYHFVSSRE 592

Query: 89  QMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVA 148
           QMEKDIQNHLFIEAGQYNDNLYGTSVASVR+VA+KGKHCILDVSGNAIKRLQVA L+P+A
Sbjct: 593 QMEKDIQNHLFIEAGQYNDNLYGTSVASVREVADKGKHCILDVSGNAIKRLQVAQLFPIA 652

Query: 149 IFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
           IFIKPKSVESIMEMNKRMTEEQAKK ++RS+KMEQEFGE+FTAVVQGD PEDIY++VKEV
Sbjct: 653 IFIKPKSVESIMEMNKRMTEEQAKKTFERSLKMEQEFGEYFTAVVQGDTPEDIYEQVKEV 712

Query: 209 IQEQSGPSIWVPSKDPL 225
           I+EQSGP+IWVP+K+ L
Sbjct: 713 IKEQSGPTIWVPTKEKL 729

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046729|ref|XP_001850904.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167869404|gb|EDS32787.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 192/257 (74%), Gaps = 49/257 (19%)

Query: 18  TSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTE------------ 65
            STL+RKKKNFSFSR+FPFMKSKDDK+EDGSDQEPFMLCYTQDD   E            
Sbjct: 605 VSTLDRKKKNFSFSRRFPFMKSKDDKNEDGSDQEPFMLCYTQDDANAEAEENILSYESVQ 664

Query: 66  -------------------------------------DTTRARREYEVDGRDYHFVSSRE 88
                                                 TTR +R+YEVDGRDYHFV+SRE
Sbjct: 665 RLSIAYTRPVIILGPLKDRINDDLISEYPNKFGSCVPHTTRPKRDYEVDGRDYHFVASRE 724

Query: 89  QMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVA 148
           QMEKDIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA L+PVA
Sbjct: 725 QMEKDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPVA 784

Query: 149 IFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
           IFIKPKS+ESIMEMN+RMTEEQAKK Y+R++KME EFGE+FTA+VQGD  E+IY KVK V
Sbjct: 785 IFIKPKSIESIMEMNRRMTEEQAKKTYERALKMEHEFGEYFTAIVQGDTIEEIYSKVKNV 844

Query: 209 IQEQSGPSIWVPSKDPL 225
           I  QSGP+IWVPSK+ L
Sbjct: 845 IWSQSGPTIWVPSKESL 861

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182343|gb|EJY57327.1| AAEL016988-PA [Aedes aegypti]

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/256 (67%), Positives = 192/256 (75%), Gaps = 49/256 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTE------------- 65
           STL+RKKKNFSFSR+FPFMKSKDDK+EDGSDQEPFMLCYTQDD   E             
Sbjct: 693 STLDRKKKNFSFSRRFPFMKSKDDKNEDGSDQEPFMLCYTQDDANAEAEENILSYESVQR 752

Query: 66  ------------------------------------DTTRARREYEVDGRDYHFVSSREQ 89
                                                TTR +R+YEVDGRDYHFV+SREQ
Sbjct: 753 LQISYTRPVIILGPLKDRINDDLISEYPNKFGSCVPHTTRPKRDYEVDGRDYHFVASREQ 812

Query: 90  MEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAI 149
           MEKDIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA L+P+A+
Sbjct: 813 MEKDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLFPIAV 872

Query: 150 FIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
           FIKPKSVESIMEMN+RMTEEQAKK Y+R++KME EFGE+FTA+VQGD  E+IY KVK VI
Sbjct: 873 FIKPKSVESIMEMNRRMTEEQAKKTYERALKMEHEFGEYFTALVQGDTIEEIYSKVKNVI 932

Query: 210 QEQSGPSIWVPSKDPL 225
             QSGP+IWVPSK+ L
Sbjct: 933 WSQSGPTIWVPSKESL 948

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45554813|ref|NP_996406.1| discs large 1, isoform B [Drosophila melanogaster] gi|51704269|sp|P31007.2|DLG1_DROME RecName: Full=Disks large 1 tumor suppressor protein gi|45446905|gb|AAS65308.1| discs large 1, isoform B [Drosophila melanogaster]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 192/258 (74%), Gaps = 51/258 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNF+FSRKFPFMKS+D+K+EDGSDQEPFMLCYTQDD   E             
Sbjct: 713 STLDRKKKNFTFSRKFPFMKSRDEKNEDGSDQEPFMLCYTQDDANAEGASEENVLSYEAV 772

Query: 67  ---------------------------------------TTRARREYEVDGRDYHFVSSR 87
                                                  TTR +REYEVDGRDYHFVSSR
Sbjct: 773 QRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 832

Query: 88  EQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPV 147
           EQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA LYPV
Sbjct: 833 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPV 892

Query: 148 AIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKE 207
           A+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFGE+FT VVQGD  E+IY KVK 
Sbjct: 893 AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKS 952

Query: 208 VIQEQSGPSIWVPSKDPL 225
           +I  QSGP+IWVPSK+ L
Sbjct: 953 MIWSQSGPTIWVPSKESL 970

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45554791|ref|NP_996404.1| discs large 1, isoform H [Drosophila melanogaster] gi|45446906|gb|AAS65309.1| discs large 1, isoform H [Drosophila melanogaster]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 192/258 (74%), Gaps = 51/258 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNF+FSRKFPFMKS+D+K+EDGSDQEPFMLCYTQDD   E             
Sbjct: 654 STLDRKKKNFTFSRKFPFMKSRDEKNEDGSDQEPFMLCYTQDDANAEGASEENVLSYEAV 713

Query: 67  ---------------------------------------TTRARREYEVDGRDYHFVSSR 87
                                                  TTR +REYEVDGRDYHFVSSR
Sbjct: 714 QRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 773

Query: 88  EQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPV 147
           EQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA LYPV
Sbjct: 774 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPV 833

Query: 148 AIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKE 207
           A+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFGE+FT VVQGD  E+IY KVK 
Sbjct: 834 AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKS 893

Query: 208 VIQEQSGPSIWVPSKDPL 225
           +I  QSGP+IWVPSK+ L
Sbjct: 894 MIWSQSGPTIWVPSKESL 911

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077752|ref|NP_001096955.1| discs large 1, isoform K [Drosophila melanogaster] gi|158031792|gb|ABW09394.1| discs large 1, isoform K [Drosophila melanogaster]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 192/258 (74%), Gaps = 51/258 (19%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTED------------ 66
           STL+RKKKNF+FSRKFPFMKS+D+K+EDGSDQEPFMLCYTQDD   E             
Sbjct: 654 STLDRKKKNFTFSRKFPFMKSRDEKNEDGSDQEPFMLCYTQDDANAEGASEENVLSYEAV 713

Query: 67  ---------------------------------------TTRARREYEVDGRDYHFVSSR 87
                                                  TTR +REYEVDGRDYHFVSSR
Sbjct: 714 QRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 773

Query: 88  EQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPV 147
           EQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKHCILDVSGNAIKRLQVA LYPV
Sbjct: 774 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPV 833

Query: 148 AIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKE 207
           A+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFGE+FT VVQGD  E+IY KVK 
Sbjct: 834 AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKS 893

Query: 208 VIQEQSGPSIWVPSKDPL 225
           +I  QSGP+IWVPSK+ L
Sbjct: 894 MIWSQSGPTIWVPSKESL 911

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001944|gb|EEZ98391.1| hypothetical protein TcasGA2_TC000855 [Tribolium castaneum]

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 196/275 (71%), Gaps = 68/275 (24%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQE------------------PFMLCYTQD 60
           STL+RKKKNFSFSRKFPFMKSKDDKSEDGSDQE                   FMLCYTQ+
Sbjct: 238 STLDRKKKNFSFSRKFPFMKSKDDKSEDGSDQEHSPSATPNSANDNERNPSSFMLCYTQE 297

Query: 61  DPTTED--------------------------------------------------TTRA 70
           D   E                                                   TTR 
Sbjct: 298 DANAEGNEENVLSYEPVQQMAINYTRPVIILGPLKDRINDDLISEFPDKFGSCVPHTTRP 357

Query: 71  RREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILD 130
           +REYEVD RDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVR+VA+KGKHCILD
Sbjct: 358 KREYEVDARDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVREVADKGKHCILD 417

Query: 131 VSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFT 190
           VSGNAIKRLQVA L+P+AIFIKPKSVESIMEMNKRMTEEQAKK ++RS+KMEQEFGE+FT
Sbjct: 418 VSGNAIKRLQVAQLFPIAIFIKPKSVESIMEMNKRMTEEQAKKTFERSLKMEQEFGEYFT 477

Query: 191 AVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           AVVQGD PEDIY++VKEVI+EQSGP+IWVP+K+ L
Sbjct: 478 AVVQGDTPEDIYEQVKEVIKEQSGPTIWVPTKEKL 512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45554804|ref|NP_996405.1| discs large 1, isoform G [Drosophila melanogaster] gi|386764222|ref|NP_001245623.1| discs large 1, isoform Q [Drosophila melanogaster] gi|45446909|gb|AAS65312.1| discs large 1, isoform G [Drosophila melanogaster] gi|383293331|gb|AFH07337.1| discs large 1, isoform Q [Drosophila melanogaster]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/283 (60%), Positives = 192/283 (67%), Gaps = 76/283 (26%)

Query: 19  STLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEP-------------------------F 53
           STL+RKKKNF+FSRKFPFMKS+D+K+EDGSDQEP                         F
Sbjct: 693 STLDRKKKNFTFSRKFPFMKSRDEKNEDGSDQEPNGVVSSTSEIDINNVNNNQSNEPQPF 752

Query: 54  MLCYTQDDPTTED----------------------------------------------- 66
           MLCYTQDD   E                                                
Sbjct: 753 MLCYTQDDANAEGASEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGS 812

Query: 67  ----TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
               TTR +REYEVDGRDYHFVSSREQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAE
Sbjct: 813 CVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAE 872

Query: 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKME 182
           KGKHCILDVSGNAIKRLQVA LYPVA+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KME
Sbjct: 873 KGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKME 932

Query: 183 QEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           QEFGE+FT VVQGD  E+IY KVK +I  QSGP+IWVPSK+ L
Sbjct: 933 QEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 975

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
FB|FBgn0001624	970	dlg1 "discs large 1" [Drosophi	0.706	0.163	0.836	1.2e-75
ZFIN|ZDB-GENE-050221-3	881	dlg2 "discs, large (Drosophila	0.715	0.182	0.795	7.2e-68
UNIPROTKB|F1MNQ1	361	DLG2 "Uncharacterized protein"	0.706	0.440	0.798	2.8e-66
UNIPROTKB|F1STU6	236	DLG2 "Uncharacterized protein"	0.706	0.673	0.798	2.8e-66
MGI|MGI:1344351	852	Dlg2 "discs, large homolog 2 (	0.706	0.186	0.798	2.8e-66
RGD|619895	852	Dlg2 "discs, large homolog 2 (	0.706	0.186	0.798	2.8e-66
UNIPROTKB|F1M907	767	Dlg2 "Disks large homolog 2" [	0.706	0.207	0.798	2.8e-66
UNIPROTKB|Q15700	870	DLG2 "Disks large homolog 2" [	0.706	0.182	0.792	5.8e-66
UNIPROTKB|F1NPX2	711	DLG2 "Uncharacterized protein"	0.706	0.223	0.798	7.4e-66
UNIPROTKB|F1MNQ3	800	F1MNQ3 "Uncharacterized protei	0.706	0.198	0.767	4.1e-65

FB|FBgn0001624 dlg1 "discs large 1" [Drosophila melanogaster (taxid:7227)]

 Score = 707 (253.9 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 133/159 (83%), Positives = 148/159 (93%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +REYEVDGRDYHFVSSREQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKH
Sbjct:   812 TTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 871

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYPVA+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFG
Sbjct:   872 CILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFG 931

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FT VVQGD  E+IY KVK +I  QSGP+IWVPSK+ L
Sbjct:   932 EYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 970

GO:0005886 "plasma membrane" evidence=IDA;IMP;NAS

GO:0005918 "septate junction" evidence=NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0008104 "protein localization" evidence=IMP;TAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004385 "guanylate kinase activity" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IGI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0008283 "cell proliferation" evidence=TAS

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=TAS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=NAS;TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0030710 "regulation of border follicle cell delamination" evidence=TAS

GO:0005938 "cell cortex" evidence=IDA

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0008105 "asymmetric protein localization" evidence=IMP;TAS

GO:0007399 "nervous system development" evidence=IMP

GO:0045175 "basal protein localization" evidence=NAS;IMP

GO:0045179 "apical cortex" evidence=IDA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0043195 "terminal bouton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0019991 "septate junction assembly" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0051726 "regulation of cell cycle" evidence=NAS

GO:0005154 "epidermal growth factor receptor binding" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016323 "basolateral plasma membrane" evidence=TAS

GO:0045202 "synapse" evidence=IDA;TAS

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=TAS

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0051294 "establishment of spindle orientation" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0008049 "male courtship behavior" evidence=IMP

GO:0045475 "locomotor rhythm" evidence=IMP

GO:0007617 "mating behavior" evidence=IMP

GO:0046956 "positive phototaxis" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005920 "smooth septate junction" evidence=IDA

ZFIN|ZDB-GENE-050221-3 dlg2 "discs, large (Drosophila) homolog 2" [Danio rerio (taxid:7955)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 128/161 (79%), Positives = 147/161 (91%)

Query:    65 EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKG 124
             EDTTR +R+YEVDGRDYHF++SREQMEKDIQ H FIEAGQYNDNLYGTSV SV+ VAE+G
Sbjct:   721 EDTTRPKRDYEVDGRDYHFMASREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVKYVAERG 780

Query:   125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE 184
             KHCILDVSGNAIKRLQVA LYP+AIFIKP+S+ES+MEMNKR+TEEQAKK YDR+MK+EQE
Sbjct:   781 KHCILDVSGNAIKRLQVAQLYPIAIFIKPRSIESLMEMNKRLTEEQAKKTYDRAMKLEQE 840

Query:   185 FGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             FGE+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   841 FGEYFTALVQGDTLEDIYNQCKMVIEEQSGPYIWIPSKEKL 881

GO:0010923 "negative regulation of phosphatase activity" evidence=ISS

UNIPROTKB|F1MNQ1 DLG2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   203 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 262

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   263 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 322

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   323 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 361

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

UNIPROTKB|F1STU6 DLG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:    78 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 137

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   138 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 197

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   198 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 236

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

MGI|MGI:1344351 Dlg2 "discs, large homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   694 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 753

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   754 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 813

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   814 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 852

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0019233 "sensory perception of pain" evidence=IMP

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043113 "receptor clustering" evidence=ISO

GO:0044224 "juxtaparanode region of axon" evidence=ISO;IDA

GO:0045161 "neuronal ion channel clustering" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

RGD|619895 Dlg2 "discs, large homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   694 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 753

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   754 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 813

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   814 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 852

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=TAS;IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO;ISS

GO:0014069 "postsynaptic density" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0019233 "sensory perception of pain" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030425 "dendrite" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043113 "receptor clustering" evidence=IMP

GO:0044224 "juxtaparanode region of axon" evidence=ISO;IDA

GO:0045161 "neuronal ion channel clustering" evidence=IMP

GO:0045211 "postsynaptic membrane" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|F1M907 Dlg2 "Disks large homolog 2" [Rattus norvegicus (taxid:10116)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 127/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   609 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 668

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   669 CILDVSGNAIKRLQVAQLYPIAIFIKPKSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 728

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   729 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 767

GO:0007268 "synaptic transmission" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|Q15700 DLG2 "Disks large homolog 2" [Homo sapiens (taxid:9606)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 126/159 (79%), Positives = 143/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   712 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 771

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKP+S+E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   772 CILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 831

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   832 EYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 870

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

GO:0004385 "guanylate kinase activity" evidence=TAS

UNIPROTKB|F1NPX2 DLG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 127/159 (79%), Positives = 142/159 (89%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV SREQMEKDIQ H FIEAGQYNDNLYGTSV SVR VAE+GKH
Sbjct:   553 TTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKH 612

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQVA LYP+AIFIKPKS E +MEMNKR+TEEQAKK YDR++K+EQEFG
Sbjct:   613 CILDVSGNAIKRLQVAQLYPIAIFIKPKSWEPLMEMNKRLTEEQAKKTYDRAIKLEQEFG 672

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E+FTA+VQGD  EDIY + K VI+EQSGP IW+PSK+ L
Sbjct:   673 EYFTAIVQGDSLEDIYNQCKLVIEEQSGPFIWIPSKEKL 711

GO:0007268 "synaptic transmission" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1MNQ3 F1MNQ3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 122/159 (76%), Positives = 146/159 (91%)

Query:    67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
             TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR+VAEKGKH
Sbjct:   642 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVREVAEKGKH 701

Query:   127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
             CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+TEEQA+K ++R+MK+EQEF 
Sbjct:   702 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTEEQARKTFERAMKLEQEFT 761

Query:   187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
             E FTA+VQGD  EDIY +VK++I+EQSGP IWVP+K+ L
Sbjct:   762 EHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL 800

GO:0097025 "MPP7-DLG1-LIN7 complex" evidence=IEA

GO:0097016 "L27 domain binding" evidence=IEA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0070830 "tight junction assembly" evidence=IEA

GO:0060022 "hard palate development" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048745 "smooth muscle tissue development" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0048608 "reproductive structure development" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043219 "lateral loop" evidence=IEA

GO:0042982 "amyloid precursor protein metabolic process" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042130 "negative regulation of T cell proliferation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0032147 "activation of protein kinase activity" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0031579 "membrane raft organization" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0030432 "peristalsis" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0009898 "internal side of plasma membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002369 "T cell cytokine production" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0001935 "endothelial cell proliferation" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0001771 "immunological synapse formation" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5PYH7	DLG2_DANRE	No assigned EC number	0.6104	0.9066	0.2315	yes	N/A
Q15700	DLG2_HUMAN	No assigned EC number	0.6099	0.9066	0.2344	yes	N/A
P15454	KGUA_YEAST	2, ., 7, ., 4, ., 8	0.3375	0.6133	0.7379	yes	N/A
P31007	DLG1_DROME	No assigned EC number	0.6666	0.92	0.2134	yes	N/A
Q28C55	DLG1_XENTR	No assigned EC number	0.5372	0.9022	0.2189	yes	N/A
Q63622	DLG2_RAT	No assigned EC number	0.7987	0.7066	0.1866	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	3e-58
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	5e-50
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	5e-25
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	4e-24
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	2e-23
PLN02772	398	PLN02772, PLN02772, guanylate kinase	3e-23
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	7e-22
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	1e-11
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	1e-08

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score =  181 bits (462), Expect = 3e-58
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EVDG+DYHFVS +E+ME DI  + F+E  ++N N YGTS  ++  +AE GK 
Sbjct: 37  TTRPPRPGEVDGKDYHFVS-KEEMENDISANEFLEYAEFNGNYYGTSKEAIEQIAESGKI 95

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDV    +K+L+ A L P+++FIKP S++ +    KR   EQ +K+  R    EQEF 
Sbjct: 96  CILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQ 155

Query: 187 EF--FTAVVQGDMPEDIYQKVKEVIQEQ 212
            +  F  ++  D  ++ Y+K+KE+++ +
Sbjct: 156 HYALFDYIIVNDDLDEAYKKLKEILEAE 183

Length = 183

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score =  160 bits (407), Expect = 5e-50
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV+G DYHFVS +E+ E DI++ LF+E G+Y  N YGTS  ++R VAEKGKH
Sbjct: 27  TTRPPRPGEVNGVDYHFVS-KEEFEDDIKSGLFLEWGEYEGNYYGTSKETIRQVAEKGKH 85

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           C+LD+    +K+L+ A LYP+ IFI P S E +    ++   E ++++  R    ++E  
Sbjct: 86  CLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRQRGTETSERIQKRLAAAQKEAQ 145

Query: 187 E--FFTAVVQGDMPEDIYQKVKEVIQEQ 212
           E   F  V+  D  ED Y+++KE+++ +
Sbjct: 146 EYHLFDYVIVNDDLEDAYEELKEILEAE 173

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score = 94.9 bits (237), Expect = 5e-25
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EVDG DYHFVS +E+ E+ I+N  F+E  +++ N YGTS A+V +   +GK 
Sbjct: 34  TTRKPRPGEVDGVDYHFVS-KEEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALAEGKI 92

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKP 153
            IL++     ++++ +    V+IFI P
Sbjct: 93  VILEIDVQGARQVKKSYPDAVSIFILP 119

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EVDG DY FVS +E+ E+ I+   F+E  + + N YGT  + V +    GK 
Sbjct: 34  TTRKPRPGEVDGVDYFFVS-KEEFEEMIKAGEFLEWAEVHGNYYGTPKSPVEEALAAGKD 92

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRM------TEEQAKKMYD 176
            +L  DV G      QV   +P  V+IFI P S+E   E+ +R+      +EE  ++   
Sbjct: 93  VLLEIDVQG----ARQVKKKFPDAVSIFILPPSLE---ELERRLRKRGTDSEEVIERRLA 145

Query: 177 RSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE 211
           ++ K E    + F  V+  D  E   +++K +I  
Sbjct: 146 KA-KKEIAHADEFDYVIVNDDLEKAVEELKSIILA 179

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score = 92.8 bits (232), Expect = 2e-23
 Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 12/105 (11%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTRA R  EVDG DY FVS +E+ E+ I+N  F+E  +   N YGT  + V +    GK 
Sbjct: 39  TTRAPRPGEVDGVDYFFVS-KEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEEALAAGKD 97

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
            +L  D  G A    QV    P  V+IFI P S+E   E+ +R+ 
Sbjct: 98  VLLEIDWQG-A---RQVKKKMPDAVSIFILPPSLE---ELERRLR 135

Length = 205

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 96.1 bits (239), Expect = 3e-23
 Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 14/152 (9%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTRA RE E DG  YHF + R  MEK+I++  F+E    + NLYGTS+ +V  V + GK 
Sbjct: 170 TTRAPREMEKDGVHYHF-TERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKR 228

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMK 180
           CILD+     + ++ +SL  + IFI P S+E   E+ KR+      TEEQ +K   R+ +
Sbjct: 229 CILDIDVQGARSVRASSLEAIFIFICPPSME---ELEKRLRARGTETEEQIQKRL-RNAE 284

Query: 181 MEQEFGE---FFTAVVQGDMPEDIYQKVKEVI 209
            E E G+    F  ++  D  E+ Y+ +K+++
Sbjct: 285 AELEQGKSSGIFDHILYNDNLEECYKNLKKLL 316

Length = 398

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score = 88.4 bits (220), Expect = 7e-22
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EVDG DY FV+  E+ E+ I+   F+E  +Y+ N YGTS   V     +GK 
Sbjct: 37  TTRKPRPGEVDGVDYFFVT-EEEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEGKD 95

Query: 127 CILDVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE 184
            ILD+       LQV    P  V+IFI P S+E +    K    +  + +  R    ++E
Sbjct: 96  VILDIDVQGA--LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKE 153

Query: 185 FGE--FFTAVVQGDMPEDIYQKVKEVIQE 211
                 F  V+  D  E   +++K +I  
Sbjct: 154 ISHADEFDYVIVNDDLEKALEELKSIILA 182

Length = 191

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R  E+DG DYHFV + E+  + I  +  +E  +   N YG   A VR     G+ 
Sbjct: 47  TTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQALASGRD 105

Query: 127 CIL--DVSGNA-IKRLQVASLYPVAIFIKPKSVESIM-EMNKRMTE 168
            I+  DV G A IKRL   +   V IF+ P S++ +   +  R TE
Sbjct: 106 VIVKVDVQGAASIKRLVPEA---VFIFLAPPSMDELTRRLELRRTE 148

Length = 206

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTRA R  + +G+ Y F++  E+ +K I +  F+E  + +DN YGT  A + D  ++G+ 
Sbjct: 38  TTRAPRPGDEEGKTYFFLT-IEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRS 96

Query: 127 CILDVSGNAIKRLQVASLYP---VAIFIKPKSVES-IMEMNKRMTE-EQAKKMYDRSMKM 181
            I+D+     K   +   +P   V IFI+P S E     +  R T+ E++ +    +  +
Sbjct: 97  AIMDIDVQGAK--IIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGII 154

Query: 182 EQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
           E +    F   +  D  ED    ++ +I
Sbjct: 155 ELDEANEFDYKIINDDLEDAIADLEAII 182

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	100.0
PRK14737	186	gmk guanylate kinase; Provisional	100.0
KOG0609|consensus	542		100.0
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	100.0
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	100.0
PLN02772	398	guanylate kinase	100.0
PRK14738	206	gmk guanylate kinase; Provisional	100.0
KOG0708|consensus	359		100.0
KOG0707|consensus	231		100.0
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	100.0
PRK00300	205	gmk guanylate kinase; Provisional	99.97
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.97
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.88
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.86
KOG3580|consensus	1027		99.82
PRK08356	195	hypothetical protein; Provisional	99.8
COG3709	192	Uncharacterized component of phosphonate metabolis	99.75
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.24
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.12
PRK00698	205	tmk thymidylate kinase; Validated	98.82
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.77
PRK04040	188	adenylate kinase; Provisional	98.64
PRK06762	166	hypothetical protein; Provisional	98.31
PRK01184	184	hypothetical protein; Provisional	98.3
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.17
PRK00098	298	GTPase RsgA; Reviewed	98.01
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.0
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.96
PLN02840	421	tRNA dimethylallyltransferase	97.86
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.86
PRK05480	209	uridine/cytidine kinase; Provisional	97.85
PRK04182	180	cytidylate kinase; Provisional	97.84
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.82
PRK05541	176	adenylylsulfate kinase; Provisional	97.8
PRK00131	175	aroK shikimate kinase; Reviewed	97.76
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.63
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.6
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.55
PHA02530	300	pseT polynucleotide kinase; Provisional	97.54
PRK14530	215	adenylate kinase; Provisional	97.52
PRK08233	182	hypothetical protein; Provisional	97.5
PRK05057	172	aroK shikimate kinase I; Reviewed	97.49
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.48
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.48
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.47
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.44
PRK14531	183	adenylate kinase; Provisional	97.42
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.42
PRK13946	184	shikimate kinase; Provisional	97.42
PRK13947	171	shikimate kinase; Provisional	97.38
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.38
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.35
PRK14532	188	adenylate kinase; Provisional	97.31
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.26
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.25
PRK13975	196	thymidylate kinase; Provisional	97.23
PLN02200	234	adenylate kinase family protein	97.19
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.17
PRK13808	333	adenylate kinase; Provisional	97.17
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.16
PRK14527	191	adenylate kinase; Provisional	97.13
PRK03839	180	putative kinase; Provisional	97.09
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.05
PRK06696	223	uridine kinase; Validated	97.03
PTZ00451	244	dephospho-CoA kinase; Provisional	96.99
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.98
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.97
PRK13948	182	shikimate kinase; Provisional	96.97
PRK00279	215	adk adenylate kinase; Reviewed	96.94
KOG1384|consensus	348		96.93
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.91
PRK00889	175	adenylylsulfate kinase; Provisional	96.91
PLN02422	232	dephospho-CoA kinase	96.89
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.88
PLN02924	220	thymidylate kinase	96.81
PLN02748	468	tRNA dimethylallyltransferase	96.8
PRK13973	213	thymidylate kinase; Provisional	96.73
PRK06761	282	hypothetical protein; Provisional	96.71
PRK14528	186	adenylate kinase; Provisional	96.71
KOG3812|consensus	475		96.7
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.66
PRK03731	171	aroL shikimate kinase II; Reviewed	96.62
PLN02165	334	adenylate isopentenyltransferase	96.58
PRK13949	169	shikimate kinase; Provisional	96.57
KOG3209|consensus	984		96.53
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.45
PLN02674	244	adenylate kinase	96.44
PLN02348	395	phosphoribulokinase	96.43
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.43
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.4
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	96.39
PRK02496	184	adk adenylate kinase; Provisional	96.37
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.31
COG4639	168	Predicted kinase [General function prediction only	96.27
PRK14526	211	adenylate kinase; Provisional	96.25
KOG3079|consensus	195		96.2
PRK14734	200	coaE dephospho-CoA kinase; Provisional	96.19
PRK13974	212	thymidylate kinase; Provisional	96.16
PRK13976	209	thymidylate kinase; Provisional	96.16
KOG3354|consensus	191		96.14
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.1
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.09
PRK12338	319	hypothetical protein; Provisional	96.05
PRK03846	198	adenylylsulfate kinase; Provisional	96.04
PRK07933	213	thymidylate kinase; Validated	96.0
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.98
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.94
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	95.91
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.91
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	95.84
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	95.8
PRK06217	183	hypothetical protein; Validated	95.78
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	95.77
PLN02842	505	nucleotide kinase	95.71
PRK14529	223	adenylate kinase; Provisional	95.61
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.51
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	95.47
PTZ00301	210	uridine kinase; Provisional	95.47
PRK08118	167	topology modulation protein; Reviewed	95.46
KOG3220|consensus	225		95.46
PRK07667	193	uridine kinase; Provisional	95.42
PRK07261	171	topology modulation protein; Provisional	95.3
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.26
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	95.16
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	95.12
PRK09087	226	hypothetical protein; Validated	95.06
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.03
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	94.87
PRK06547	172	hypothetical protein; Provisional	94.85
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	94.83
PRK07429	327	phosphoribulokinase; Provisional	94.82
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.7
PRK00023	225	cmk cytidylate kinase; Provisional	94.7
PRK00625	173	shikimate kinase; Provisional	94.63
PLN02459	261	probable adenylate kinase	94.6
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	94.5
PRK12337	475	2-phosphoglycerate kinase; Provisional	94.49
COG1162	301	Predicted GTPases [General function prediction onl	94.39
PRK09825	176	idnK D-gluconate kinase; Provisional	94.35
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	94.31
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	94.19
PLN02318	656	phosphoribulokinase/uridine kinase	93.99
KOG1969|consensus	877		93.92
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	93.92
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	93.9
COG4619	223	ABC-type uncharacterized transport system, ATPase	93.89
PRK06620	214	hypothetical protein; Validated	93.76
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.71
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	93.7
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	93.66
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	93.5
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	93.2
KOG3347|consensus	176		93.2
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	93.18
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	93.17
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	93.17
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.03
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	92.96
COG1660	286	Predicted P-loop-containing kinase [General functi	92.92
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	92.86
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	92.84
PHA00729	226	NTP-binding motif containing protein	92.8
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	92.74
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	92.71
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	92.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	92.62
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	92.56
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	92.55
TIGR00959	428	ffh signal recognition particle protein. This mode	92.43
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	92.37
PLN02199	303	shikimate kinase	92.33
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	92.31
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	92.23
PRK08099	399	bifunctional DNA-binding transcriptional repressor	92.2
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	92.1
cd03115	173	SRP The signal recognition particle (SRP) mediates	92.01
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	91.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	91.76
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	91.62
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	91.6
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	91.23
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	91.03
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	90.76
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	90.69
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	90.69
PRK15453	290	phosphoribulokinase; Provisional	90.68
PLN03025	319	replication factor C subunit; Provisional	90.68
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	90.62
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.51
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	90.32
KOG3062|consensus	281		90.31
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	90.06
CHL00181	287	cbbX CbbX; Provisional	89.83
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	89.8
COG2256	436	MGS1 ATPase related to the helicase subunit of the	89.79
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	89.73
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	89.61
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	89.56
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	89.47
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	89.45
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	89.23
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	88.94
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	88.9
PRK14088	440	dnaA chromosomal replication initiation protein; P	88.83
PF09439	181	SRPRB: Signal recognition particle receptor beta s	88.67
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	88.64
PRK12289	352	GTPase RsgA; Reviewed	88.54
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	88.35
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	88.28
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	88.21
PRK10867	433	signal recognition particle protein; Provisional	88.18
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	87.93
PRK14086	617	dnaA chromosomal replication initiation protein; P	87.83
KOG1970|consensus	634		87.79
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	87.76
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	87.68
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	87.61
smart00382	148	AAA ATPases associated with a variety of cellular	87.52
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	87.37
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	87.33
PRK07399	314	DNA polymerase III subunit delta'; Validated	87.08
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	86.93
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	86.91
PRK05428	308	HPr kinase/phosphorylase; Provisional	86.64
PRK05439	311	pantothenate kinase; Provisional	86.37
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	86.33
COG3638	258	ABC-type phosphate/phosphonate transport system, A	86.31
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	86.16
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	86.15
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	86.1
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	85.89
PRK00149	450	dnaA chromosomal replication initiation protein; R	85.72
PRK12288	347	GTPase RsgA; Reviewed	85.59
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	85.56
PF00004	132	AAA: ATPase family associated with various cellula	85.46
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	85.34
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	85.3
PF13555	62	AAA_29: P-loop containing region of AAA domain	85.28
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	85.24
KOG3877|consensus	393		85.17
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	84.71
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	84.57
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	84.55
COG4136	213	ABC-type uncharacterized transport system, ATPase	84.17
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	84.16
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	84.12
PF05729	166	NACHT: NACHT domain	84.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	84.07
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	84.07
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	83.97
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	83.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	83.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	83.81
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	83.76
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	83.67
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	83.43
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	83.41
KOG0991|consensus	333		83.16
COG1484	254	DnaC DNA replication protein [DNA replication, rec	83.11
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	83.09
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	83.05
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	83.01
PF00005	137	ABC_tran: ABC transporter This structure is on hol	82.96
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	82.65
COG4525	259	TauB ABC-type taurine transport system, ATPase com	82.64
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	82.59
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	82.39
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	82.34
PRK13342	413	recombination factor protein RarA; Reviewed	82.23
PRK05707	328	DNA polymerase III subunit delta'; Validated	82.2
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	82.07
TIGR00679	304	hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene	82.06
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	82.04
KOG1533|consensus	290		81.68
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	81.46
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	81.43
cd04105	203	SR_beta Signal recognition particle receptor, beta	81.27
cd01896	233	DRG The developmentally regulated GTP-binding prot	81.11
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	81.08
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	80.96
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	80.82
PF13245	76	AAA_19: Part of AAA domain	80.76
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	80.63
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	80.56
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	80.55
PTZ00202	550	tuzin; Provisional	80.41
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	80.4
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	80.36
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	80.23
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	80.09
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	80.06
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	80.06

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=7.2e-50  Score=332.97  Aligned_cols=162  Identities=30%  Similarity=0.408  Sum_probs=150.0

Q ss_pred             CCccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         49 DQEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      .+.++||+||||+||+                |+|||+||+||+||+||||| |+++|+++|+.++||||.+|+||||||
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fv-s~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFV-TEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeC-CHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            3568999999999998                99999999999999999999 999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhhCCCC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEFGEFF  189 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~~~~f  189 (225)
                      ++..|+.++++|++||||++.+|++.++..--..++|||.|||+++|++ |++|++  ++.|.+||..|. .|+.+...|
T Consensus        82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~-~Ei~~~~~f  160 (191)
T COG0194          82 SREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAK-KEISHADEF  160 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHH-HHHHHHHhC
Confidence            9999999999999999999999987776432223889999999999998 999995  789999999995 588888899


Q ss_pred             cEEEECCCHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~Nddleea~~~lk~iI~~~  212 (225)
                      |++|+|||++.|+.+|+.||..+
T Consensus       161 dyvivNdd~e~a~~~l~~ii~ae  183 (191)
T COG0194         161 DYVIVNDDLEKALEELKSIILAE  183 (191)
T ss_pred             CEEEECccHHHHHHHHHHHHHHH
Confidence            99999999999999999999876

>PRK14737 gmk guanylate kinase; Provisional

Probab=100.00  E-value=2.9e-47  Score=319.64  Aligned_cols=158  Identities=28%  Similarity=0.441  Sum_probs=147.6

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      ..+|||+|||||||+                 +|||||||+||+||+||||| |+++|+++|++|.|+||++|+||+|||
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fv-s~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFL-TIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeC-CHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            468999999999998                 99999999999999999999 999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC---eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP---VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG  186 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P---i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~  186 (225)
                      |+++|+.++++|++||||++++|++.|+..  +|   ++|||.|||.+.+++ |.+|+  +++++++||+++. .|+++.
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~--~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~-~e~~~~  159 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEK--FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI-IELDEA  159 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcCHHHHHHHHHh--CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhh
Confidence            999999999999999999999999999854  55   799999999998886 87886  5789999999984 688888


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHHh
Q psy10228        187 EFFTAVVQGDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       187 ~~fd~vI~Nddleea~~~lk~iI~~  211 (225)
                      +.||++|+|+|+++++++|+++|..
T Consensus       160 ~~~D~vI~N~dle~a~~ql~~ii~~  184 (186)
T PRK14737        160 NEFDYKIINDDLEDAIADLEAIICG  184 (186)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999874

>KOG0609|consensus

Probab=100.00  E-value=1.2e-47  Score=357.24  Aligned_cols=190  Identities=34%  Similarity=0.580  Sum_probs=174.5

Q ss_pred             eecccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHH
Q psy10228         30 FSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQME   91 (225)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~   91 (225)
                      -+-.++.|+.+.....  -.-+.+||+|++|+|..                  ||||||||++|+||++|||| |+++|+
T Consensus       322 d~~~~~tYEEV~~~~~--~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV-Sk~~~e  398 (542)
T KOG0609|consen  322 DQPELLTYEEVVRYPP--FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV-SKEEME  398 (542)
T ss_pred             hccccccHHHHhhhcc--cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee-ehHHHh
Confidence            3445566666665432  22379999999999997                  99999999999999999999 999999


Q ss_pred             HhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhc-------
Q psy10228         92 KDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNK-------  164 (225)
Q Consensus        92 ~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~-------  164 (225)
                      ++|.+|+|+|||+|.||+|||++++|+.++++||+||||+.|++++.|+++++.|++|||.||+++.++++++       
T Consensus       399 ~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~  478 (542)
T KOG0609|consen  399 ADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTI  478 (542)
T ss_pred             hhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987653       


Q ss_pred             ---cCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCC
Q psy10228        165 ---RMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSK  222 (225)
Q Consensus       165 ---R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~  222 (225)
                         +.++++++++++.+..+|+.|+|+||.+|+|+|+++++++|+.+|+....+|+|||++
T Consensus       479 ~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvs  539 (542)
T KOG0609|consen  479 VAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVS  539 (542)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeee
Confidence               3468999999999999999999999999999999999999999999999999999986

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=100.00  E-value=5.4e-46  Score=309.07  Aligned_cols=159  Identities=40%  Similarity=0.693  Sum_probs=142.0

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      .++|||+|||||||+                  +|||||||+||+||+||||| |+++|++++++|+||||++|+|++||
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv-s~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV-SKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE---HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE-eechhhhhhccccEEEEeeecchhhh
Confidence            479999999999998                  99999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhhCCC
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~~~~  188 (225)
                      |++++|+.++++|++||||++++|++.|+...++|++|||.|||.+.|++ |++|+.  .+++.+|+..+   +..+..+
T Consensus        81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~---~~~~~~~  157 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERA---EKEFEHY  157 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHH---HHHHGGG
T ss_pred             hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHH---HHHHhHh
Confidence            99999999999999999999999999999999999999999999999998 777773  45677777766   3444444


Q ss_pred             --CcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        189 --FTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       189 --fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                        ||++|+|+++++++.+|+++|+++
T Consensus       158 ~~fd~vi~n~~le~~~~~l~~ii~~~  183 (183)
T PF00625_consen  158 NEFDYVIVNDDLEEAVKELKEIIEQE  183 (183)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence              999999999999999999999863

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>smart00072 GuKc Guanylate kinase homologues

Probab=100.00  E-value=5e-45  Score=303.98  Aligned_cols=161  Identities=41%  Similarity=0.670  Sum_probs=150.6

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      .++|||+|||||||+                  +|||||||+||++|+||||| |+++|+.++++|.|+||++|+||+||
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fv-s~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFV-SREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEEC-CHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            468999999999998                  99999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~  188 (225)
                      |++++|++++++|++||||++++|+++|+....+|++|||.|||.++|++ |..|+  +++++++|+.+|.+++. ..+.
T Consensus        81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~-~~~~  159 (184)
T smart00072       81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQ-EYHL  159 (184)
T ss_pred             cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhcc
Confidence            99999999999999999999999999999888899999999999999987 88887  47899999999865444 4488


Q ss_pred             CcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        189 FTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       189 fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                      ||++|+|+|+++++++|+++|.++
T Consensus       160 fd~~I~n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      160 FDYVIVNDDLEDAYEELKEILEAE  183 (184)
T ss_pred             CCEEEECcCHHHHHHHHHHHHHhc
Confidence            999999999999999999999875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02772 guanylate kinase

Probab=100.00  E-value=3.1e-42  Score=316.31  Aligned_cols=165  Identities=34%  Similarity=0.543  Sum_probs=152.0

Q ss_pred             CCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228         47 GSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN  108 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn  108 (225)
                      +++.+++||+||||+||+                  +||||+||++|++|+||||+ ++++|++++++|.|+||++|+||
T Consensus       132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-s~eeFe~~i~~g~FlE~~e~~Gn  210 (398)
T PLN02772        132 GNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-ERSVMEKEIKDGKFLEFASVHGN  210 (398)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-CHHHHHHHHHhCccceeeeecCc
Confidence            446689999999999998                  99999999999999999999 99999999999999999999999


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~  185 (225)
                      +||||+++|+.++++|++||||++++|++.++...+.|++|||.|||.++|++ |+.|++  +++|++||.+|. .|++.
T Consensus       211 ~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~-~Ei~~  289 (398)
T PLN02772        211 LYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAE-AELEQ  289 (398)
T ss_pred             cccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhh
Confidence            99999999999999999999999999999999877788999999999999997 888884  789999999994 35543


Q ss_pred             ---CCCCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        186 ---GEFFTAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       186 ---~~~fd~vI~Nddleea~~~lk~iI~~~~  213 (225)
                         .+.||++|+|||+++|+++|+++|....
T Consensus       290 ~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~~  320 (398)
T PLN02772        290 GKSSGIFDHILYNDNLEECYKNLKKLLGLDG  320 (398)
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHhhcC
Confidence               5689999999999999999999997654

>PRK14738 gmk guanylate kinase; Provisional

Probab=100.00  E-value=7.7e-36  Score=253.42  Aligned_cols=166  Identities=23%  Similarity=0.341  Sum_probs=145.4

Q ss_pred             CCCCCCccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC
Q psy10228         45 EDGSDQEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND  107 (225)
Q Consensus        45 ~~~~~~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g  107 (225)
                      ++++..++|||+|||||||+                 +||||+||++|++|++|||| ++++|++++++|.|+||++++|
T Consensus         8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv-~~~~f~~~~~~~~~le~~~~~g   86 (206)
T PRK14738          8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYG   86 (206)
T ss_pred             CCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeC-CHHHHHHHHHcCCcEEEEEEcC
Confidence            35566789999999999998                 99999999999999999999 9999999999999999999999


Q ss_pred             cceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHh
Q psy10228        108 NLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQE  184 (225)
Q Consensus       108 n~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~  184 (225)
                      |+|||++++|+.++++|++||++++.+|+..|+.....+++||+.||+.++|++ |.+|.+  ++++.+|+..+. .+..
T Consensus        87 ~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~-~e~~  165 (206)
T PRK14738         87 NYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAP-LELE  165 (206)
T ss_pred             ceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHh
Confidence            999999999999999999999999999998887433223789999999988776 888874  578888998874 3454


Q ss_pred             hCCCCcEEEEC--CCHHHHHHHHHHHHHhc
Q psy10228        185 FGEFFTAVVQG--DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       185 ~~~~fd~vI~N--ddleea~~~lk~iI~~~  212 (225)
                      ....||++++|  +++++++++|..+|...
T Consensus       166 ~~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        166 QLPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            45668999888  47999999999999875

>KOG0708|consensus

Probab=100.00  E-value=3e-36  Score=271.75  Aligned_cols=191  Identities=44%  Similarity=0.738  Sum_probs=172.0

Q ss_pred             cchhhhhccccceeecccccccccCCCC---CC-------------------CCCCccEEEEccCC-----------CCC
Q psy10228         17 NTSTLERKKKNFSFSRKFPFMKSKDDKS---ED-------------------GSDQEPFMLCYTQD-----------DPT   63 (225)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~ivl~Gpsg-----------sGK   63 (225)
                      |......++.+|.++|+|||+++++.++   .+                   .+-.+|++|.||--           .+|
T Consensus       132 rr~r~r~k~~~f~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~k  211 (359)
T KOG0708|consen  132 RRVRLRLKRDSFNSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDK  211 (359)
T ss_pred             cccccccccccccccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhcc
Confidence            3444455568899999999999999883   11                   12246999999842           333


Q ss_pred             C----CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHH
Q psy10228         64 T----EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRL  139 (225)
Q Consensus        64 ~----s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L  139 (225)
                      =    +|||||.               +++|++.++++.||++++++|++|||++.+|++++++|+||||||+++|+++|
T Consensus       212 F~~C~~~t~~~~---------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rL  276 (359)
T KOG0708|consen  212 FKSCLPETLRPS---------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRL  276 (359)
T ss_pred             ccccchhhhccc---------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHH
Confidence            1    9999984               78999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceee
Q psy10228        140 QVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV  219 (225)
Q Consensus       140 ~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WV  219 (225)
                      +.+++|||+|||.|.|.+.++.++.+.+.+++++.+++|.++|++|..+|+.+|..+++++++.+|+.+|.++|++++||
T Consensus       277 q~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWV  356 (359)
T KOG0708|consen  277 QRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWV  356 (359)
T ss_pred             HhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCC
Q psy10228        220 PSK  222 (225)
Q Consensus       220 p~~  222 (225)
                      |++
T Consensus       357 p~~  359 (359)
T KOG0708|consen  357 PAK  359 (359)
T ss_pred             eCC
Confidence            975

>KOG0707|consensus

Probab=100.00  E-value=2.1e-35  Score=252.85  Aligned_cols=165  Identities=33%  Similarity=0.497  Sum_probs=150.8

Q ss_pred             CCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228         47 GSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN  108 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn  108 (225)
                      ..+.+++||+||||+||+                  |||||.||.+|++|+||||+ +.++|+.|+++++|+||+.+.||
T Consensus        34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs-~~~~~~s~i~~~~fiE~a~~~gn  112 (231)
T KOG0707|consen   34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFS-TTEEFLSMIKNNEFIEFATFSGN  112 (231)
T ss_pred             CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceec-cHHHHHHHhhhhhhhhhhhhhcc
Confidence            445589999999999998                  99999999999999999999 99999999999999999999999


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~  185 (225)
                      +|||++++|+++...|+.|++||+.+|++.++...+.++.||+.||+...+++ |+.|++  ++++.+|+..| ++|..+
T Consensus       113 ~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa-~~e~~~  191 (231)
T KOG0707|consen  113 KYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSA-EEEFEI  191 (231)
T ss_pred             cCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhh-hhhhcc
Confidence            99999999999999999999999999998888778899999999999998887 999996  57888999955 567766


Q ss_pred             CC---CCcEEEEC-CCHHHHHHHHHHHHHhcc
Q psy10228        186 GE---FFTAVVQG-DMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       186 ~~---~fd~vI~N-ddleea~~~lk~iI~~~~  213 (225)
                      ..   .||++++| +++++++++++.++....
T Consensus       192 ~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~  223 (231)
T KOG0707|consen  192 LENSGSFDLVIVNSDRLEEAYKELEIFISSDD  223 (231)
T ss_pred             ccCCccccceecCCCchhhhhhhhhhhhhHHH
Confidence            54   59999999 899999999999987653

>TIGR03263 guanyl_kin guanylate kinase

Probab=100.00  E-value=1.4e-31  Score=220.24  Aligned_cols=158  Identities=28%  Similarity=0.396  Sum_probs=145.0

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS  113 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs  113 (225)
                      ++|+|+|||||||+                 ++|||+|+.||.+|.+|+|+ +.++|.+++..+.|++++.+.+++||++
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFV-SKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEe-cHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            58999999999999                 78999999999999999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228        114 VASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFFT  190 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~fd  190 (225)
                      .+.|+.++++|++||+|++..|+..+...-..|..||+.|++.+.+++ |+.|+  +++++++|+..+. .+..+.+.||
T Consensus        81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~-~~~~~~~~~d  159 (180)
T TIGR03263        81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAK-KEIAHADEFD  159 (180)
T ss_pred             HHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhccccCc
Confidence            999999999999999999999998888765567899999999888886 88886  4688999999884 4667788999


Q ss_pred             EEEECCCHHHHHHHHHHHHH
Q psy10228        191 AVVQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       191 ~vI~Nddleea~~~lk~iI~  210 (225)
                      ++|.|+++++++.+|++++.
T Consensus       160 ~~i~n~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       160 YVIVNDDLEKAVEELKSIIL  179 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHh
Confidence            99999999999999999885

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.97  E-value=2.4e-30  Score=217.31  Aligned_cols=161  Identities=27%  Similarity=0.390  Sum_probs=146.6

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      +++|+|+||||||||                 ++|||+|+.||++|.||+|+ +.++|.+++..+.|++++.+.||+||+
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFV-SKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEc-CHHHHHHHHHcCCcEEEEEECCccccC
Confidence            568999999999999                 68999999999999999999 999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFF  189 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~f  189 (225)
                      +..+|..++++|++||+|++++|+..+......+++||+.|++.+.+++ +..|.  +++.+++|+..+. .+..+.+.|
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~~~~  162 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAR-EEIAHASEY  162 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhHHhC
Confidence            9999999999999999999999998887654456899999999888886 87776  5789999999874 456666789


Q ss_pred             cEEEECCCHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~Nddleea~~~lk~iI~~~  212 (225)
                      |++|+|+++++++.+|+.++...
T Consensus       163 d~vi~n~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        163 DYVIVNDDLDTALEELKAIIRAE  185 (205)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999986

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.97  E-value=1.3e-30  Score=208.57  Aligned_cols=118  Identities=35%  Similarity=0.519  Sum_probs=113.7

Q ss_pred             cEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228         52 PFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS  113 (225)
Q Consensus        52 ~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs  113 (225)
                      +|+|+|||||||+                  +||||+||++|++|++|+|+ +.++|.+++..+.|+||++++||+||++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v-~~~~~~~~~~~~~f~e~~~~~~~~yg~~   79 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFV-SKEEFERLIENGEFLEWAEFHGNYYGTS   79 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEe-CHHHHHHHHHcCCeEEEEEEcCEEecCc
Confidence            5899999999999                  78999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEE
Q psy10228        114 VASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVV  193 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI  193 (225)
                      .++|++++++|++||+|++.+|++.|+.....|++|||.||                                   |++|
T Consensus        80 ~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~-----------------------------------~~~~  124 (137)
T cd00071          80 KAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP-----------------------------------DYVI  124 (137)
T ss_pred             HHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC-----------------------------------CeEE
Confidence            99999999999999999999999999987778899999998                                   9999


Q ss_pred             ECCCHHHHHHHH
Q psy10228        194 QGDMPEDIYQKV  205 (225)
Q Consensus       194 ~Nddleea~~~l  205 (225)
                      .||++|+++++|
T Consensus       125 ~~~~~~~~~~~~  136 (137)
T cd00071         125 VNDDLEKAYEEL  136 (137)
T ss_pred             eCCCHHHHHHhh
Confidence            999999999876

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.88  E-value=3.4e-22  Score=166.57  Aligned_cols=154  Identities=10%  Similarity=0.107  Sum_probs=119.3

Q ss_pred             ccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         51 EPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        51 ~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      .+++|+||||||||                  ++|||+++.   .+.+|+|+ +.++|.++++++.|.+++.++||+|||
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIAL-SEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeE-cHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            47999999999999                  788998875   47789999 899999999999999888999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~  188 (225)
                      ++ ++++.++.|++||++........+...-..+ .+||+.+ |.+.+.+ |..|.  +++++.+|++++..    + ..
T Consensus        79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~-s~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~-~~  151 (186)
T PRK10078         79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV-SPEILRQRLENRGRENASEINARLARAAR----Y-QP  151 (186)
T ss_pred             cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHHhCCCCHHHHHHHHHHhhh----h-cc
Confidence            99 5999999999999877665555554332233 4566655 5677765 76554  57789999976532    2 24


Q ss_pred             CcEEEECC--CHHHHHHHHHHHHHhccCC
Q psy10228        189 FTAVVQGD--MPEDIYQKVKEVIQEQSGP  215 (225)
Q Consensus       189 fd~vI~Nd--dleea~~~lk~iI~~~~~~  215 (225)
                      +|++|+|+  ++++++++|..++...+.+
T Consensus       152 ad~~vi~~~~s~ee~~~~i~~~l~~~~~~  180 (186)
T PRK10078        152 QDCHTLNNDGSLRQSVDTLLTLLHLSQKE  180 (186)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhhcCcc
Confidence            68555544  5999999999999876654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.86  E-value=1.5e-20  Score=154.73  Aligned_cols=151  Identities=13%  Similarity=0.147  Sum_probs=120.2

Q ss_pred             ccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         51 EPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      .+++|+||||||||                    ++|||+++   .+|.+|+|+ +.++|..++.++.|.+++++.|++|
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   77 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIAL-STEEFDHREDGGAFALSWQAHGLSY   77 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCcccccc-CHHHHHHHHHCCCEEEEEeecCccc
Confidence            47899999999999                    67888864   579999999 9999999999999999999999999


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC-
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG-  186 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~-  186 (225)
                      |++. .+...+++|..||++.+..+...++......++|||.++ .+.+.+ |..|.  +++.+.+++.+...    +. 
T Consensus        78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~~~----~~~  151 (179)
T TIGR02322        78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARSAR----FAA  151 (179)
T ss_pred             cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHHhh----ccc
Confidence            9998 488889999999999998877666532223378899864 566654 76665  46778888876532    22 


Q ss_pred             CCCcEE-EECC-CHHHHHHHHHHHHHh
Q psy10228        187 EFFTAV-VQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       187 ~~fd~v-I~Nd-dleea~~~lk~iI~~  211 (225)
                      ..+|++ |.|+ ++++++.+|.+++.+
T Consensus       152 ~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       152 APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            456776 5565 799999999999865

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG3580|consensus

Probab=99.82  E-value=3e-20  Score=175.64  Aligned_cols=181  Identities=25%  Similarity=0.467  Sum_probs=145.6

Q ss_pred             hhccccc-hhhhhcc-----ccceeecccccccccCCCCCCCCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEec
Q psy10228         12 RLRNLNT-STLERKK-----KNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVS   85 (225)
Q Consensus        12 ~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~   85 (225)
                      ++||||. ++++-+|     +.+..+.|||.|+.+-.  -+++++++++|.||-+.--.                     
T Consensus       589 R~RGlRsg~KknlrkSREDLsA~~vqtkfPaYERVvL--REAgFkRPVvifGPiADiAm---------------------  645 (1027)
T KOG3580|consen  589 RMRGLRSGVKKNLRKSREDLSAVVVQTKFPAYERVVL--REAGFKRPVVIFGPIADIAM---------------------  645 (1027)
T ss_pred             HHhhhhhhhhhhhhhhhhhhhhceecccCCchhhhhh--hhhcccCceEEeccHHHHHH---------------------
Confidence            5799976 6666555     57889999999999976  58999999999999774211                     


Q ss_pred             CHHHHHHhhhCCcEEEEEEeC-------C--ccee-ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCC
Q psy10228         86 SREQMEKDIQNHLFIEAGQYN-------D--NLYG-TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKS  155 (225)
Q Consensus        86 s~eef~~~i~~~~FiE~~~~~-------g--n~YG-Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps  155 (225)
                           +++.  +++-.|.+..       |  -.-| +...+|+.++++.||.||||.|++|.+|.+.++|||+||+.|.|
T Consensus       646 -----eKLa--~E~PD~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdS  718 (1027)
T KOG3580|consen  646 -----EKLA--NELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDS  718 (1027)
T ss_pred             -----HHHh--hhCcchhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcc
Confidence                 1110  1111111100       0  0112 46788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCC---HHHHHHHHHHHHHHHHhhCCCCcEEEE-CCCHHHHHHHHHHHHHhccCCceeeeCC
Q psy10228        156 VESIMEMNKRMT---EEQAKKMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWVPSK  222 (225)
Q Consensus       156 ~~~L~~L~~R~s---eeei~~rl~~a~k~E~~~~~~fd~vI~-Nddleea~~~lk~iI~~~~~~~~WVp~~  222 (225)
                      ...++.|++|+.   -...++.+++|.++...+.|+|+++|. |..-+.+|..|+.+|.++|+.++||...
T Consensus       719 rqgvktmRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEg  789 (1027)
T KOG3580|consen  719 RQGVKTMRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEG  789 (1027)
T ss_pred             hHHHHHHHHHhCcccchhHHHHHHHHHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEeecc
Confidence            999999999994   457788999999999999999999987 6678899999999999999999999875

>PRK08356 hypothetical protein; Provisional

Probab=99.80  E-value=4.6e-20  Score=154.91  Aligned_cols=157  Identities=17%  Similarity=0.227  Sum_probs=113.2

Q ss_pred             CCCccEEEEccCCCCCC--------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228         48 SDQEPFMLCYTQDDPTT--------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS  113 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~--------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs  113 (225)
                      +....|+|+||+||||+              ++|+|.+|..|.+|.+|+|+ +...|..++..+.|+||+++.+++||++
T Consensus         3 ~~~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          3 VEKMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWV-PEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCCcccccccccccccccc-cHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            44567899999999999              89999999999999999999 9999999999999999999999999998


Q ss_pred             H---HHHHHHHHcCCeEEEEccHHHHHHHHhh----ccCCeEEEEecCCHHHHH-HHhccCC--------HHHHHHHHHH
Q psy10228        114 V---ASVRDVAEKGKHCILDVSGNAIKRLQVA----SLYPVAIFIKPKSVESIM-EMNKRMT--------EEQAKKMYDR  177 (225)
Q Consensus       114 ~---~sV~~v~~~gk~~ildv~~~gvk~L~~~----~~~Pi~IFI~pps~~~L~-~L~~R~s--------eeei~~rl~~  177 (225)
                      .   ..++.+ ..+..+++|    |++.+...    .....+|||.+|. +.+. +|..|..        .+++.+ +..
T Consensus        82 ~~~~~~~~~~-~~~~~ivid----G~r~~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~~e~~~~-~~~  154 (195)
T PRK08356         82 ILIRLAVDKK-RNCKNIAID----GVRSRGEVEAIKRMGGKVIYVEAKP-EIRFERLRRRGAEKDKGIKSFEDFLK-FDE  154 (195)
T ss_pred             HHHHHHHHHh-ccCCeEEEc----CcCCHHHHHHHHhcCCEEEEEECCH-HHHHHHHHhcCCccccccccHHHHHH-HHH
Confidence            4   333333 222333333    44434321    2224789999886 4444 4877763        233433 332


Q ss_pred             HHHHH----HhhCCCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228        178 SMKME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       178 a~k~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~  213 (225)
                      +. .+    ......+|++|+|+ ++++++.+|..++...+
T Consensus       155 ~~-~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~  194 (195)
T PRK08356        155 WE-EKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILRELS  194 (195)
T ss_pred             HH-HHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence            31 11    12236799999985 89999999999998764

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.75  E-value=3.8e-17  Score=134.12  Aligned_cols=153  Identities=14%  Similarity=0.173  Sum_probs=124.0

Q ss_pred             CccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcc
Q psy10228         50 QEPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL  109 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~  109 (225)
                      +++|+++||||+||.                    .+.|||.-.   -|+|+-=| |..+|..+-.+|.|.-.|+.||.+
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~a---g~EdH~av-s~~eF~~~a~~g~FAlsWqAhGL~   80 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADA---GGEDHDAL-SEAEFNTRAGQGAFALSWQAHGLS   80 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCC---Cccccccc-CHHHHHHHhhcCceeEEehhcCcc
Confidence            578999999999998                    678888744   56888889 999999999999999999999999


Q ss_pred             eeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh
Q psy10228        110 YGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQE  184 (225)
Q Consensus       110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~  184 (225)
                      ||++.+ |...++.|.++|.+.+...+..++.  .||  .+|.|.+ +.++|.+ |..|+  +.++|..||.|+..  ..
T Consensus        81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arr--ry~~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~--~~  154 (192)
T COG3709          81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARR--RYPQLLVVCITA-SPEVLAQRLAERGRESREEILARLARAAR--YT  154 (192)
T ss_pred             ccCchh-HHHHHhCCCEEEEeccHhhhHHHHH--hhhcceeEEEec-CHHHHHHHHHHhccCCHHHHHHHHHhhcc--cc
Confidence            999987 9999999999999999887776663  455  4555555 4588886 76666  67999999999842  22


Q ss_pred             hCCCCcE-EEECC-CHHHHHHHHHHHHHhcc
Q psy10228        185 FGEFFTA-VVQGD-MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       185 ~~~~fd~-vI~Nd-dleea~~~lk~iI~~~~  213 (225)
                       ....|. +|.|+ .++.+.+++...+.+.+
T Consensus       155 -~~~~dv~~idNsG~l~~ag~~ll~~l~~~~  184 (192)
T COG3709         155 -AGPGDVTTIDNSGELEDAGERLLALLHQDS  184 (192)
T ss_pred             -cCCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence             235564 55676 69999999999988554

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.24  E-value=2.1e-12  Score=116.48  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=76.2

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      .+|+|+||||||||                          ++|||+|+++|++|++|||+ +..++.+....+.|+++. 
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhli-d~~~~~~~~s~~~f~~~a-   82 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLI-DILDPTESYSVADFQRDA-   82 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEee-cccChhhcccHHHHHHHH-
Confidence            57999999999999                          88999999999999999999 888888888778887755 


Q ss_pred             eCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-Hhcc
Q psy10228        105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKR  165 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R  165 (225)
                               .+.|++++++|+++||+ .+.|+ .++ +-+..+  +..||+...+++ |..+
T Consensus        83 ---------~~~i~~i~~~gk~pIlv-GGt~~-Y~~-al~~g~--~~~p~~~~~~r~~l~~~  130 (307)
T PRK00091         83 ---------LAAIADILARGKLPILV-GGTGL-YIK-ALLEGL--SPLPPADPELRAELEAL  130 (307)
T ss_pred             ---------HHHHHHHHhCCCCEEEE-CcHHH-HHH-HhccCC--CCCCCCCHHHHHHHHHH
Confidence                     78899999999999987 55554 122 112222  356777666654 5443

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.12  E-value=4e-11  Score=98.83  Aligned_cols=155  Identities=13%  Similarity=-0.017  Sum_probs=88.1

Q ss_pred             CccEEEEccCCCCCCCccc----CCCCCCCCCCcceEEecCHHHHHH---hhhCCc-EEEEEE-eCCcceeecHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTT----RARREYEVDGRDYHFVSSREQMEK---DIQNHL-FIEAGQ-YNDNLYGTSVASVRDV  120 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TT----Rp~R~~E~dG~dY~FV~s~eef~~---~i~~~~-FiE~~~-~~gn~YGTs~~sV~~v  120 (225)
                      +++|+|+|+||||||+..-    +.+...=.-|+|+++.+....+..   .+..+. +.++.+ ..++.||+....+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence            3589999999999992221    111110012666554423322221   111111 222222 3457999999999999


Q ss_pred             HHcCCeEEEEccHHHHHHHHh--hcc--CC-eEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhh-CCCCcEEE
Q psy10228        121 AEKGKHCILDVSGNAIKRLQV--ASL--YP-VAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEF-GEFFTAVV  193 (225)
Q Consensus       121 ~~~gk~~ildv~~~gvk~L~~--~~~--~P-i~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~-~~~fd~vI  193 (225)
                      +++|..||+|....+...++.  ..+  .| ..||+.+|. +++.+ +.+|...  . .++..+. .+..+ ...+|.+|
T Consensus        82 l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~-~~l~~R~~~R~~~--~-~~~~~~~-~~~~~~~~~~dl~i  156 (175)
T cd00227          82 ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG-EVAEGRETARGDR--V-PGQARKQ-ARVVHAGVEYDLEV  156 (175)
T ss_pred             HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhcCCc--c-chHHHHH-HHHhcCCCcceEEE
Confidence            999999999964332111211  112  23 678888875 66665 7777642  1 2233332 12222 35689988


Q ss_pred             ECC--CHHHHHHHHHHHH
Q psy10228        194 QGD--MPEDIYQKVKEVI  209 (225)
Q Consensus       194 ~Nd--dleea~~~lk~iI  209 (225)
                      .++  ++++++++|...|
T Consensus       157 Dts~~s~~e~a~~i~~~l  174 (175)
T cd00227         157 DTTHKTPIECARAIAARV  174 (175)
T ss_pred             ECCCCCHHHHHHHHHHhc
Confidence            876  6899998887764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.82  E-value=2.7e-08  Score=82.87  Aligned_cols=152  Identities=12%  Similarity=0.044  Sum_probs=88.7

Q ss_pred             CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhh--CCcEEEEEE---eCCc
Q psy10228         50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQ--NHLFIEAGQ---YNDN  108 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~--~~~FiE~~~---~~gn  108 (225)
                      +.+|+|.|++|||||                .++|+.|+ ++..         .+.|...+.  ...+..+..   +..+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPL---------GEKLRELLLDPNEEMDDKTELLLFYAA   72 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChH---------HHHHHHHHhccccCCCHHHHHHHHHHH
Confidence            358999999999999                46777776 2322         245555554  233333332   2356


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEc------cHH---------HHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCCHH
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDV------SGN---------AIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMTEE  169 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv------~~~---------gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~see  169 (225)
                      .|++....|...+++|.++|+|=      .-+         -+..+...   ...| .+||+..|.-..++++.+|...+
T Consensus        73 r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~  152 (205)
T PRK00698         73 RAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELD  152 (205)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence            78888888888889999999982      111         11222211   1345 78888887644444588776311


Q ss_pred             -------HHHHHHHHHHHHHHhhCCCCcEEEEC-C-CHHHHHHHHHHHHHhc
Q psy10228        170 -------QAKKMYDRSMKMEQEFGEFFTAVVQG-D-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       170 -------ei~~rl~~a~k~E~~~~~~fd~vI~N-d-dleea~~~lk~iI~~~  212 (225)
                             +..+++..+.+ +......++.+++| + +++++.++|..+|...
T Consensus       153 ~~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        153 RIEQEGLDFFERVREGYL-ELAEKEPERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             hhhhhhHHHHHHHHHHHH-HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                   22334433321 11111223444444 3 7999999999998753

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.77  E-value=3e-09  Score=95.21  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe
Q psy10228         52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY  105 (225)
Q Consensus        52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~  105 (225)
                      +|+|+||+|||||                          +.||++|+++|.+|+.|||+ +            +++..+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhli-d------------~~~~~~~   67 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLI-D------------ILDPSES   67 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEE-E------------Eechhhe
Confidence            4899999999998                          89999999999999999999 4            5555543


Q ss_pred             C--CcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228        106 N--DNLYGTSVASVRDVAEKGKHCILDVSGNA  135 (225)
Q Consensus       106 ~--gn~YGTs~~sV~~v~~~gk~~ildv~~~g  135 (225)
                      .  +++|++..+.|++++++|+.+|+. .+.|
T Consensus        68 ~~v~~f~~~a~~~i~~~~~~g~~pi~v-GGTg   98 (287)
T TIGR00174        68 YSAADFQTLALNAIADITARGKIPLLV-GGTG   98 (287)
T ss_pred             EcHHHHHHHHHHHHHHHHhCCCCEEEE-cCcH
Confidence            3  789999999999999999998874 4444

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK04040 adenylate kinase; Provisional

Probab=98.64  E-value=9.3e-08  Score=80.40  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=46.9

Q ss_pred             ccCC-eEEEEecCCHHHHHH-Hhc----cC--CHHHHHHHHHHHHHHHHhhC---CCCcEEEECCC--HHHHHHHHHHHH
Q psy10228        143 SLYP-VAIFIKPKSVESIME-MNK----RM--TEEQAKKMYDRSMKMEQEFG---EFFTAVVQGDM--PEDIYQKVKEVI  209 (225)
Q Consensus       143 ~~~P-i~IFI~pps~~~L~~-L~~----R~--seeei~~rl~~a~k~E~~~~---~~fd~vI~Ndd--leea~~~lk~iI  209 (225)
                      .+.| .+|+|.+|..+.+++ ++.    |.  +++.++.+++.+......++   +.|+++|+|++  +++|+++|..+|
T Consensus       108 ~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        108 ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            3456 334444433366666 542    54  56888988888865444443   67999999999  999999999987


Q ss_pred             H
Q psy10228        210 Q  210 (225)
Q Consensus       210 ~  210 (225)
                      .
T Consensus       188 ~  188 (188)
T PRK04040        188 R  188 (188)
T ss_pred             C
Confidence            3

>PRK06762 hypothetical protein; Provisional

Probab=98.31  E-value=4.1e-06  Score=67.89  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      .+|+|+|++|||||+..-.-.   +.-|..+.++ +.+.+...+..+    +.......+-.-...++..++.|..+|+|
T Consensus         3 ~li~i~G~~GsGKST~A~~L~---~~l~~~~~~i-~~D~~r~~l~~~----~~~~~~~~~~~~~~~~~~~~~~g~~vild   74 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQ---ERLGRGTLLV-SQDVVRRDMLRV----KDGPGNLSIDLIEQLVRYGLGHCEFVILE   74 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHH---HHhCCCeEEe-cHHHHHHHhccc----cCCCCCcCHHHHHHHHHHHHhCCCEEEEc
Confidence            478999999999983322111   1113357788 788877654211    11111111111233344557789999987


Q ss_pred             ccH--H----HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhCCCCcEEEECC--
Q psy10228        131 VSG--N----AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD--  196 (225)
Q Consensus       131 v~~--~----gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~~~fd~vI~Nd--  196 (225)
                      -..  .    -++.+....-.| ..||+.+|-...+++..+|.     +++.++.+++.-     +-.+.++.+|+++  
T Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~  149 (166)
T PRK06762         75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH-----DTLGVIGETIFTDNL  149 (166)
T ss_pred             hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc-----CCcCCCCeEEecCCC
Confidence            532  1    133443322234 67899887544444565553     345555444332     1123468888765  


Q ss_pred             CHHHHHHHHHHHHH
Q psy10228        197 MPEDIYQKVKEVIQ  210 (225)
Q Consensus       197 dleea~~~lk~iI~  210 (225)
                      ++++.++++...+.
T Consensus       150 ~~~~v~~~i~~~~~  163 (166)
T PRK06762        150 SLKDIFDAILTDIG  163 (166)
T ss_pred             CHHHHHHHHHHHhc
Confidence            58888888877654

>PRK01184 hypothetical protein; Provisional

Probab=98.30  E-value=3.1e-06  Score=69.82  Aligned_cols=154  Identities=12%  Similarity=0.132  Sum_probs=81.9

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE----EEEeCC---cceeecH--HHHHHHHH
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE----AGQYND---NLYGTSV--ASVRDVAE  122 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE----~~~~~g---n~YGTs~--~sV~~v~~  122 (225)
                      .|+|+||+|||||+...-.    +.-|  |.++++-+.+.+.+..+.+-.    ++...-   ..||-..  ..+...+.
T Consensus         3 ~i~l~G~~GsGKsT~a~~~----~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~   76 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSKIA----REMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR   76 (184)
T ss_pred             EEEEECCCCCCHHHHHHHH----HHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            6899999999999653211    2223  444523455655543221100    111000   1222111  11122232


Q ss_pred             c--CCeEEEEcc--HHHHHHHHhhccCC---eEEEEecCCHHHHHHHhccC------CHHHHHHHHHHHHHH-HHhhCCC
Q psy10228        123 K--GKHCILDVS--GNAIKRLQVASLYP---VAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMKM-EQEFGEF  188 (225)
Q Consensus       123 ~--gk~~ildv~--~~gvk~L~~~~~~P---i~IFI~pps~~~L~~L~~R~------seeei~~rl~~a~k~-E~~~~~~  188 (225)
                      .  +..+|+|.-  +.-+..++  ..++   .+|+|.+|....+.+|..|.      +.+++.+|.+..... ..+....
T Consensus        77 ~~~~~~vvidg~r~~~e~~~~~--~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~  154 (184)
T PRK01184         77 EKGDEVVVIDGVRGDAEVEYFR--KEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIAL  154 (184)
T ss_pred             hcCCCcEEEeCCCCHHHHHHHH--HhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHh
Confidence            2  567788853  22233332  2234   78999887655555666664      245666665543110 1112357


Q ss_pred             CcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228        189 FTAVVQGD-MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       189 fd~vI~Nd-dleea~~~lk~iI~~~~  213 (225)
                      .|++|.|+ +++++..+++.++....
T Consensus       155 ad~vI~N~~~~~~l~~~v~~~~~~~~  180 (184)
T PRK01184        155 ADYMIVNDSTLEEFRARVRKLLERIL  180 (184)
T ss_pred             cCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            89999987 79999999999987643

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.17  E-value=1.2e-06  Score=73.72  Aligned_cols=81  Identities=19%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             CeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228        125 KHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP  198 (225)
Q Consensus       125 k~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl  198 (225)
                      +.+++|+..     |-..   ..+-.+|+|.+|.-..+++|..|  .+++++..|+..... ..+.....|+||.|+ ++
T Consensus       107 ~~vv~e~pl-----l~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~-~~~~~~~ad~vI~N~g~~  180 (194)
T PRK00081        107 PYVVLDIPL-----LFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQMP-REEKLARADDVIDNNGDL  180 (194)
T ss_pred             CEEEEEehH-----hhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHhCC-HHHHHHhCCEEEECCCCH
Confidence            577777654     2222   23447889988765556666655  378888888875422 222345789999998 89


Q ss_pred             HHHHHHHHHHHHh
Q psy10228        199 EDIYQKVKEVIQE  211 (225)
Q Consensus       199 eea~~~lk~iI~~  211 (225)
                      +++..++..++..
T Consensus       181 e~l~~qv~~i~~~  193 (194)
T PRK00081        181 EELRKQVERLLQE  193 (194)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>PRK00098 GTPase RsgA; Reviewed

Probab=98.01  E-value=1.2e-06  Score=78.54  Aligned_cols=76  Identities=13%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             CccEEEEccCCCCCC------------------------CcccCCCCCCCCC------------CcceEEecCHHHHHHh
Q psy10228         50 QEPFMLCYTQDDPTT------------------------EDTTRARREYEVD------------GRDYHFVSSREQMEKD   93 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------------s~TTRp~R~~E~d------------G~dY~FV~s~eef~~~   93 (225)
                      +..++|+|+||+|||                        .||||.++..+.+            +.+|+++ +.+++...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~  242 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDL-EAEELEHY  242 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCC-CHHHHHHH
Confidence            457899999999998                        4899998887777            6778888 88888877


Q ss_pred             hhC-CcEEEEEEeCC-cceeecHHHHHHHHHcCCe
Q psy10228         94 IQN-HLFIEAGQYND-NLYGTSVASVRDVAEKGKH  126 (225)
Q Consensus        94 i~~-~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~  126 (225)
                      ..+ ..+.++..|++ .+||++-.+|++++++|++
T Consensus       243 f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i  277 (298)
T PRK00098        243 FPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI  277 (298)
T ss_pred             HHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence            654 56777777877 8999999999999999983

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.00  E-value=1.5e-05  Score=65.28  Aligned_cols=148  Identities=13%  Similarity=0.078  Sum_probs=75.7

Q ss_pred             cEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc------EEEEEEeCCcc
Q psy10228         52 PFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL------FIEAGQYNDNL  109 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~------FiE~~~~~gn~  109 (225)
                      +|+|.|+.|||||                -++++.|+..+.          .+.+........      +.++..+..+.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   71 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPI----------GEAIRELLLDPEDEKMDPRAELLLFAADR   71 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCch----------HHHHHHHHhccCccCCCHHHHHHHHHHHH
Confidence            6899999999999                345555543221          122332222211      11111122344


Q ss_pred             eeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCCH--
Q psy10228        110 YGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMTE--  168 (225)
Q Consensus       110 YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~se--  168 (225)
                      |....+.+...+..|.++|+|-.               ...+..+..   ....| .+||+.+|....++++.+|...  
T Consensus        72 ~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~  151 (200)
T cd01672          72 AQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDR  151 (200)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch
Confidence            55555566667778999999811               122222222   11235 6788888754444457777631  


Q ss_pred             -----HHHHHHHHHHHHHHHhhCCCCcEEEEC-C-CHHHHHHHHHHHHH
Q psy10228        169 -----EQAKKMYDRSMKMEQEFGEFFTAVVQG-D-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       169 -----eei~~rl~~a~k~E~~~~~~fd~vI~N-d-dleea~~~lk~iI~  210 (225)
                           .+..+++..+.. +.........+++| + ++++..+++...|.
T Consensus       152 ~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         152 DEQEGLEFHERVREGYL-ELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hhhhhHHHHHHHHHHHH-HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence                 122233333211 11111112344443 3 68999999988875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.96  E-value=1.4e-05  Score=69.41  Aligned_cols=150  Identities=11%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE-eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ-YNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~-~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      +|+|+|++|||||+....-.+.-+..|.+++++ +.+.+.....     .|.. +...........|+..+++|..+|+|
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i-~~D~lr~~~~-----~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D   74 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIIL-GTDLIRESFP-----VWKEKYEEFIRDSTLYLIKTALKNKYSVIVD   74 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE-ccHHHHHHhH-----HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            489999999999932221111112236677777 6555543321     0111 11112233445688888899998888


Q ss_pred             ccH--HHH-HHHH---hhccCC-eEEEEecCCHHHHH-HHhccC---CHHHHHHHHHHHHHHHHhh----CCCCcEEEEC
Q psy10228        131 VSG--NAI-KRLQ---VASLYP-VAIFIKPKSVESIM-EMNKRM---TEEQAKKMYDRSMKMEQEF----GEFFTAVVQG  195 (225)
Q Consensus       131 v~~--~gv-k~L~---~~~~~P-i~IFI~pps~~~L~-~L~~R~---seeei~~rl~~a~k~E~~~----~~~fd~vI~N  195 (225)
                      -..  .+. ..+.   ...-.| .+||+.+|. +.+. +...|.   .++.+.+++.+.   |...    +...+++|..
T Consensus        75 ~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~-e~~~~Rn~~R~~~~~~~~i~~l~~r~---e~p~~~~~wd~~~~~vd~  150 (249)
T TIGR03574        75 DTNYYNSMRRDLINIAKEYNKNYIIIYLKAPL-DTLLRRNIERGEKIPNEVIKDMYEKF---DEPGTKYSWDLPDLTIDT  150 (249)
T ss_pred             ccchHHHHHHHHHHHHHhCCCCEEEEEecCCH-HHHHHHHHhCCCCCCHHHHHHHHHhh---CCCCCCCCccCceEEecC
Confidence            532  111 1111   111233 678888765 4444 455565   234454444432   2211    2346677765


Q ss_pred             C---CHHHHHHHHHHHHHh
Q psy10228        196 D---MPEDIYQKVKEVIQE  211 (225)
Q Consensus       196 d---dleea~~~lk~iI~~  211 (225)
                      +   +.+++++.|...+..
T Consensus       151 ~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       151 TKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            4   468899998887653

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.86  E-value=6.1e-06  Score=77.48  Aligned_cols=73  Identities=10%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228         50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG  103 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~  103 (225)
                      ..+|+|+||+|||||                          +.+|++|...|.+|+.|||+ +            +++-.
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhli-d------------il~p~   87 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLI-D------------ILHPS   87 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeE-e------------ecCCC
Confidence            457999999999999                          67999999999999999999 4            22222


Q ss_pred             -EeC-CcceeecHHHHHHHHHcCCeEEEEccHHHH
Q psy10228        104 -QYN-DNLYGTSVASVRDVAEKGKHCILDVSGNAI  136 (225)
Q Consensus       104 -~~~-gn~YGTs~~sV~~v~~~gk~~ildv~~~gv  136 (225)
                       .|+ |.++......|+++.++|+++||. .+.|+
T Consensus        88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvV-GGTGl  121 (421)
T PLN02840         88 DDYSVGAFFDDARRATQDILNRGRVPIVA-GGTGL  121 (421)
T ss_pred             CceeHHHHHHHHHHHHHHHHhcCCCEEEE-cCccH
Confidence             244 678888999999999999998764 55453

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.86  E-value=0.00011  Score=60.01  Aligned_cols=91  Identities=14%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             HHcCCeEEEEccHHHHHHH---HhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHH----Hh
Q psy10228        121 AEKGKHCILDVSGNAIKRL---QVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKME----QE  184 (225)
Q Consensus       121 ~~~gk~~ildv~~~gvk~L---~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E----~~  184 (225)
                      +..|..+|+|--+..+.+.   ......| .+||+.+|....++++.+|.        +++.+.+|+....+.-    ..
T Consensus        79 ~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~  158 (188)
T TIGR01360        79 LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAY  158 (188)
T ss_pred             cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence            3457788888655433222   2212235 67888887533334466554        3567788887654211    11


Q ss_pred             hCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        185 FGEFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       185 ~~~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      |...-..+++|.  ++++....|...|..
T Consensus       159 y~~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       159 YETKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             HHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            222224444443  689999999888863

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.85  E-value=6.7e-05  Score=63.21  Aligned_cols=68  Identities=13%  Similarity=0.249  Sum_probs=42.0

Q ss_pred             ccCCeEEEEecCCHHHHHHHhcc-----C-CHHHHHHHHHHHHH-HH----HhhCCCCcEEEECC-----CHHHHHHHHH
Q psy10228        143 SLYPVAIFIKPKSVESIMEMNKR-----M-TEEQAKKMYDRSMK-ME----QEFGEFFTAVVQGD-----MPEDIYQKVK  206 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~L~~R-----~-seeei~~rl~~a~k-~E----~~~~~~fd~vI~Nd-----dleea~~~lk  206 (225)
                      .++-..|||.+|.-..+.++..|     + +.+++..++..... ..    .......|+||.|+     +++++..+|.
T Consensus       124 ~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~  203 (209)
T PRK05480        124 DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIR  203 (209)
T ss_pred             hhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHH
Confidence            44568999999876666653322     3 56666666655422 11    23356899999866     4666666666


Q ss_pred             HHHH
Q psy10228        207 EVIQ  210 (225)
Q Consensus       207 ~iI~  210 (225)
                      .++.
T Consensus       204 ~~~~  207 (209)
T PRK05480        204 QLLE  207 (209)
T ss_pred             HHhh
Confidence            6554

>PRK04182 cytidylate kinase; Provisional

Probab=97.84  E-value=0.00011  Score=59.58  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=50.1

Q ss_pred             cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHH-----HHHhh------CCCC
Q psy10228        123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMK-----MEQEF------GEFF  189 (225)
Q Consensus       123 ~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k-----~E~~~------~~~f  189 (225)
                      .+..||++-...+.  +. ....-++|||.+|....++++..|.  +..++.+.+.....     ...-|      .+.+
T Consensus        73 ~~~~~Vi~g~~~~~--~~-~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  149 (180)
T PRK04182         73 KEDNVVLEGRLAGW--MA-KDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIY  149 (180)
T ss_pred             cCCCEEEEEeecce--Ee-cCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence            55567776422221  11 1122378999987544445566554  34444333333221     11112      2578


Q ss_pred             cEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228        190 TAVVQGD--MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       190 d~vI~Nd--dleea~~~lk~iI~~~~~  214 (225)
                      |.+|.++  +++++++.|.+.+...+.
T Consensus       150 d~~idt~~~~~~~~~~~I~~~~~~~~~  176 (180)
T PRK04182        150 DLVINTSRWDPEGVFDIILTAIDKLLK  176 (180)
T ss_pred             cEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            8888876  699999999999886543

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.82  E-value=9e-05  Score=62.72  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             cCCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-
Q psy10228        123 KGKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-  196 (225)
Q Consensus       123 ~gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-  196 (225)
                      ++..+++|+-.     |-..   ...-.+|||.+|....+++|.+|.  +.+++..|+..-. -..+.....|+||.|+ 
T Consensus       102 ~~~~vi~e~pL-----L~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~-~~~~k~~~aD~vI~N~~  175 (196)
T PRK14732        102 EGKLVIWEVPL-----LFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQL-PITEKLKRADYIVRNDG  175 (196)
T ss_pred             cCCcEEEEeee-----eeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcC-CHHHHHHhCCEEEECCC
Confidence            35677777643     2111   234588999998777777766663  7888988886632 1223456789999998 


Q ss_pred             CHHHHHHHHHHHHHhc
Q psy10228        197 MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 dleea~~~lk~iI~~~  212 (225)
                      +++++..++..++...
T Consensus       176 ~~~~l~~~v~~l~~~~  191 (196)
T PRK14732        176 NREGLKEECKILYSTL  191 (196)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            7999999999887654

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.80  E-value=1.7e-05  Score=65.00  Aligned_cols=151  Identities=9%  Similarity=0.084  Sum_probs=69.7

Q ss_pred             CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee---ecHHHHHH-HHHcC
Q psy10228         49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG---TSVASVRD-VAEKG  124 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG---Ts~~sV~~-v~~~g  124 (225)
                      ...+|+|+|++|||||+....-.+.-...|...+|+ +.+.+.+....     ++ |.....-   .....+.+ +...|
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~-~~d~~r~~~~~-----~~-~~~~~~~~~~~~~~~l~~~l~~~g   78 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL-DGDELREILGH-----YG-YDKQSRIEMALKRAKLAKFLADQG   78 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE-ecHHHHhhcCC-----CC-CCHHHHHHHHHHHHHHHHHHHhCC
Confidence            345899999999999822211100001123455677 55555543221     11 1000000   01122333 34578


Q ss_pred             CeEEEEccHHH--HHHHHhhccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCcEEEECC
Q psy10228        125 KHCILDVSGNA--IKRLQVASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD  196 (225)
Q Consensus       125 k~~ildv~~~g--vk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd~vI~Nd  196 (225)
                      .++|+|.....  +..+...-..| ++||+.+|- +++. ++.+++    +.++++.++..-   ...+....|++|.|+
T Consensus        79 ~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-e~~~~R~~~~l~~~~~~~~~~~~~~~~---~~~~~~~Ad~vI~~~  154 (176)
T PRK05541         79 MIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDM-EELIRRDQKGLYTKALKGEIKNVVGVD---IPFDEPKADLVIDNS  154 (176)
T ss_pred             CEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCH-HHHHHhchhhHHHHHHcCcccccccCC---CcccCCCCCEEEeCC
Confidence            88888743211  22222222233 578888763 4443 233221    112222222211   012224478999987


Q ss_pred             ---CHHHHHHHHHHHHH
Q psy10228        197 ---MPEDIYQKVKEVIQ  210 (225)
Q Consensus       197 ---dleea~~~lk~iI~  210 (225)
                         ++++.+.++...+.
T Consensus       155 ~~~~~~~~v~~i~~~l~  171 (176)
T PRK05541        155 CRTSLDEKVDLILNKLK  171 (176)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence               46777777666654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.76  E-value=0.00026  Score=56.86  Aligned_cols=67  Identities=12%  Similarity=0.301  Sum_probs=38.8

Q ss_pred             CCeEEEEecCCHHHHH-HHhccCC----H-HHHHHHHHHHH-HHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        145 YPVAIFIKPKSVESIM-EMNKRMT----E-EQAKKMYDRSM-KMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~-~L~~R~s----e-eei~~rl~~a~-k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ....|||.+|. +.+. ++..|..    . +...+.+.... +....+...+|.+|..+  +++++.+.|.+.|...
T Consensus        97 ~~~~v~l~~~~-~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~  172 (175)
T PRK00131         97 RGTVVYLDASF-EELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEAA  172 (175)
T ss_pred             CCEEEEEECCH-HHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence            35789998864 4444 4654331    0 11112222211 11233556789988754  6899999999998754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.63  E-value=0.0002  Score=57.66  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             HHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHh-----h------
Q psy10228        119 DVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQE-----F------  185 (225)
Q Consensus       119 ~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~-----~------  185 (225)
                      +.+..+..||++....+.  +. .....+.|||.+|....++++.+|.  +.+++.+++.+..+.+..     +      
T Consensus        69 ~~~~~~~~~Vi~g~~~~~--~~-~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~  145 (171)
T TIGR02173        69 EIALKEKNVVLESRLAGW--IV-REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD  145 (171)
T ss_pred             HHHhcCCCEEEEecccce--ee-cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            333356678877543222  11 1222378999997544445566664  566666655543322222     1      


Q ss_pred             CCCCcEEEECC--CHHHHHHHHHHHH
Q psy10228        186 GEFFTAVVQGD--MPEDIYQKVKEVI  209 (225)
Q Consensus       186 ~~~fd~vI~Nd--dleea~~~lk~iI  209 (225)
                      ...||.+|..+  ++++ ++.|..++
T Consensus       146 ~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       146 LSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccccEEEECCCCCHHH-HHHHHHHh
Confidence            25789877766  6888 88777654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.60  E-value=0.00094  Score=55.85  Aligned_cols=142  Identities=20%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH---cCCeEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE---KGKHCI  128 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~---~gk~~i  128 (225)
                      .|+|+|++|+|||++..+-..    -|  |..+ +-.+|-.  ++|-+.++-+- -..|=.-.+.++..++   ....+|
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~----lg--~~~i-~l~el~~--e~~~~~~~de~-r~s~~vD~d~~~~~le~~~~~~~~I   71 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLRE----LG--YKVI-ELNELAK--ENGLYTEYDEL-RKSVIVDVDKLRKRLEELLREGSGI   71 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHH----hC--Ccee-eHHHHHH--hcCCeeccCCc-cceEEeeHHHHHHHHHHHhccCCeE
Confidence            489999999999977666431    12  3444 3334433  34444433221 1256667777777777   456778


Q ss_pred             EEccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC-CHHHHHHHHHHHH--HHHHhhCCCCcEEE----ECCCH
Q psy10228        129 LDVSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM-TEEQAKKMYDRSM--KMEQEFGEFFTAVV----QGDMP  198 (225)
Q Consensus       129 ldv~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~-seeei~~rl~~a~--k~E~~~~~~fd~vI----~Nddl  198 (225)
                      +|-..        +++.|  -.|+|.-.....|.+ |++|+ +++.|.+-++.-.  -+..+.-+.|+.++    .|.++
T Consensus        72 vd~H~--------~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~  143 (180)
T COG1936          72 VDSHL--------SHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSP  143 (180)
T ss_pred             eechh--------hhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCH
Confidence            77433        24444  345554445678886 99999 6655543332210  00111123335433    36689


Q ss_pred             HHHHHHHHHHHHh
Q psy10228        199 EDIYQKVKEVIQE  211 (225)
Q Consensus       199 eea~~~lk~iI~~  211 (225)
                      +++++.+..+|..
T Consensus       144 ee~~~~i~~ii~~  156 (180)
T COG1936         144 EEVAEEIIDIIGG  156 (180)
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999999984

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.55  E-value=0.00085  Score=54.06  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCeEEEEccH---HHHHHHHhhccCCeEEEEecCCHHHHH-HHhccCC----HHHHHHHHHHHHHHHHhhC
Q psy10228        115 ASVRDVAEKGKHCILDVSG---NAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRMT----EEQAKKMYDRSMKMEQEFG  186 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~~---~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~s----eeei~~rl~~a~k~E~~~~  186 (225)
                      +.+...+..|..+|++...   .....++..+....+||+.+| .+.+. ++..|..    .+.+..++...   +.-..
T Consensus        61 ~~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~---~~~~~  136 (163)
T TIGR01313        61 DASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAAL---EEPLA  136 (163)
T ss_pred             HHHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHh---CCCCC
Confidence            3455566778777877652   222223322211245788776 45554 4777652    23343333321   21111


Q ss_pred             CCCcEEEEC-C-CHHHHHHHHHHHHH
Q psy10228        187 EFFTAVVQG-D-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       187 ~~fd~vI~N-d-dleea~~~lk~iI~  210 (225)
                      ...++++++ + ..+++.+++...+.
T Consensus       137 ~e~~~~~id~~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       137 DETDVLRVDIDQPLEGVEEDCIAVVL  162 (163)
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHh
Confidence            223555554 4 57888888877653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.54  E-value=0.00026  Score=62.64  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=65.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC---C-cceeecHHHHHHHHHcCCe
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN---D-NLYGTSVASVRDVAEKGKH  126 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~---g-n~YGTs~~sV~~v~~~gk~  126 (225)
                      ..|+++|++|||||+..-+-.+..  .  .+.++ +.+.+..++....-..+..|.   + ..+..-...+.+.+++|..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~--~--~~~~l-~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~   77 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN--P--KAVNV-NRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS   77 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC--C--CCEEE-eccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence            478999999999993222211110  1  46788 778887776432110000010   0 0112233445666788999


Q ss_pred             EEEEccHH---HHHHHH----hhccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHH
Q psy10228        127 CILDVSGN---AIKRLQ----VASLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRS  178 (225)
Q Consensus       127 ~ildv~~~---gvk~L~----~~~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a  178 (225)
                      +|+|....   -...+.    ..+.....|++.+ +.+++.+ +.+|.    .++-+++++.+.
T Consensus        78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~~~~~  140 (300)
T PHA02530         78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGERAVPEDVLRSMFKQM  140 (300)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCcCCCCHHHHHHHHHHH
Confidence            99985432   222221    1122234688877 4666665 77775    366677666654

>PRK14530 adenylate kinase; Provisional

Probab=97.52  E-value=0.00044  Score=58.67  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             CCeEEEEccHHHH-HHHHhhccCC-----eEEEEecCCHHHHH-----HHhccC--CHHHHHHHHHHHHHH----HHhhC
Q psy10228        124 GKHCILDVSGNAI-KRLQVASLYP-----VAIFIKPKSVESIM-----EMNKRM--TEEQAKKMYDRSMKM----EQEFG  186 (225)
Q Consensus       124 gk~~ildv~~~gv-k~L~~~~~~P-----i~IFI~pps~~~L~-----~L~~R~--seeei~~rl~~a~k~----E~~~~  186 (225)
                      +.++.||++..-+ +++..+...|     +.+++.||+.+.+.     +|.+|.  +++.+++||....+.    ...|.
T Consensus       107 d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~  186 (215)
T PRK14530        107 DVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYR  186 (215)
T ss_pred             CEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455567766443 4444433333     44556666544332     244454  367899999887531    12232


Q ss_pred             CCCcE-EEE-CCCHHHHHHHHHHHHHhc
Q psy10228        187 EFFTA-VVQ-GDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~-vI~-Nddleea~~~lk~iI~~~  212 (225)
                      ...-+ .|. +.++++.++.|...|.+.
T Consensus       187 ~~~~~~~id~~~~~~~v~~~i~~~l~~~  214 (215)
T PRK14530        187 DQGVLVEVDGEQTPDEVWADIQDAIDDA  214 (215)
T ss_pred             hCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            22122 333 347999999999998753

>PRK08233 hypothetical protein; Provisional

Probab=97.50  E-value=0.0011  Score=53.95  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             cCCeEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHH----HH----HhhCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        144 LYPVAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMK----ME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       144 ~~Pi~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k----~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      ....+|||.+|....+.++.+|.    +.+.+.+++..-..    .-    .......+.+|.++ ++++.++++..+|.
T Consensus        97 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~  176 (182)
T PRK08233         97 FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY  176 (182)
T ss_pred             HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence            44589999987654555544332    22233333322211    10    11123457777666 79999999999988


Q ss_pred             hc
Q psy10228        211 EQ  212 (225)
Q Consensus       211 ~~  212 (225)
                      ..
T Consensus       177 ~~  178 (182)
T PRK08233        177 RR  178 (182)
T ss_pred             hC
Confidence            54

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.49  E-value=0.0035  Score=51.63  Aligned_cols=65  Identities=5%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             CCeEEEEecCCHHHHHHHhccC-----C---HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        145 YPVAIFIKPKSVESIMEMNKRM-----T---EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R~-----s---eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ...+|||..|-...++++..+.     .   ..+.-+.+... + +..|....|++|.++  +.++++.+|.+.+++
T Consensus        97 ~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~-R-~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057         97 RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANE-R-NPLYEEIADVTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH-H-HHHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence            3478999987544344454321     1   11221222222 1 455667799999876  588999999888754

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.48  E-value=0.0024  Score=52.21  Aligned_cols=86  Identities=13%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             CCeEEEEccHHHH---HHHH---hhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----h
Q psy10228        124 GKHCILDVSGNAI---KRLQ---VASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ----E  184 (225)
Q Consensus       124 gk~~ildv~~~gv---k~L~---~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~----~  184 (225)
                      ++.+|||--|...   ..+.   .....| .+|++..|....++++.+|.        +.+.+++|++...+...    .
T Consensus        76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~  155 (183)
T TIGR01359        76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEH  155 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888654322   2222   112334 67889887655555677664        35677777775543211    1


Q ss_pred             hCCC-CcEEEECC-CHHHHHHHHHHHH
Q psy10228        185 FGEF-FTAVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       185 ~~~~-fd~vI~Nd-dleea~~~lk~iI  209 (225)
                      |... .-.+|.++ ++++.++++.+++
T Consensus       156 ~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       156 YENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            2211 12344544 6899989888765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.48  E-value=0.00011  Score=62.05  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=53.2

Q ss_pred             CCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-C
Q psy10228        124 GKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-M  197 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-d  197 (225)
                      ...+++|+..     |-..   ...-.+|||.+|.-..+.++..|  .+++++.+|++.-...+ ......|+||.|+ +
T Consensus       107 ~~~vv~e~pl-----l~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~-~k~~~aD~vI~N~g~  180 (195)
T PRK14730        107 NPIVVLVIPL-----LFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARINAQWPLE-EKVKLADVVLDNSGD  180 (195)
T ss_pred             CCEEEEEeHH-----hcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCCHH-HHHhhCCEEEECCCC
Confidence            3466777543     2111   23346899998765555666665  37888888876532111 2245789999998 7


Q ss_pred             HHHHHHHHHHHHH
Q psy10228        198 PEDIYQKVKEVIQ  210 (225)
Q Consensus       198 leea~~~lk~iI~  210 (225)
                      ++++..++..++.
T Consensus       181 ~e~l~~qv~~~l~  193 (195)
T PRK14730        181 LEKLYQQVDQLLK  193 (195)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>TIGR00152 dephospho-CoA kinase

Probab=97.47  E-value=0.0004  Score=57.69  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHH
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPED  200 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dlee  200 (225)
                      |..+++++.. -.. .........+|||.+|.-..+.++..|.  +++++.+|+...... ......+|++|.|+ ++++
T Consensus       105 ~~~vvi~~pl-l~e-~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~-~~~~~~ad~vI~N~~~~e~  181 (188)
T TIGR00152       105 LAYVLLDVPL-LFE-NKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMDI-EERLARADDVIDNSATLAD  181 (188)
T ss_pred             CCEEEEEchH-hhh-CCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCH-HHHHHhCCEEEECCCCHHH
Confidence            4566666432 110 0112345578999987656566666663  788999898886422 23345789999998 7898


Q ss_pred             HHHHHH
Q psy10228        201 IYQKVK  206 (225)
Q Consensus       201 a~~~lk  206 (225)
                      +..++.
T Consensus       182 l~~~~~  187 (188)
T TIGR00152       182 LVKQLE  187 (188)
T ss_pred             HHHHHh
Confidence            888775

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.44  E-value=0.00056  Score=58.04  Aligned_cols=92  Identities=9%  Similarity=0.144  Sum_probs=50.6

Q ss_pred             HHHHHHcCCeEEEEcc--HHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC-------HHHHHHHHHHHHHHHHhh-
Q psy10228        117 VRDVAEKGKHCILDVS--GNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT-------EEQAKKMYDRSMKMEQEF-  185 (225)
Q Consensus       117 V~~v~~~gk~~ildv~--~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s-------eeei~~rl~~a~k~E~~~-  185 (225)
                      ++..+.+|..+++|.-  ..+...... .....++|+.+++.+.+++ +..|..       .+.-.+-+.....+ |+| 
T Consensus        90 a~~~l~~G~sVIvEgv~l~p~~~~~~~-~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir~i-~~~l  167 (197)
T PRK12339         90 IRRALLNGEDLVIESLYFHPPMIDENR-TNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYRTI-MDYS  167 (197)
T ss_pred             HHHHHHcCCCEEEEecCcCHHHHHHHH-hcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHH-HHHH
Confidence            5567789999999842  122222211 1234677887778777754 666641       11111111211111 111 


Q ss_pred             ---CCCCc-EEEECCCHHHHHHHHHHHHH
Q psy10228        186 ---GEFFT-AVVQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       186 ---~~~fd-~vI~Nddleea~~~lk~iI~  210 (225)
                         +..++ -+|.|++++++.+.+.+.+.
T Consensus       168 ~~~a~~~~i~~i~~~~~~~~~~~~~~~~~  196 (197)
T PRK12339        168 IADARGYNIKVIDTDNYREARNPLLDPIS  196 (197)
T ss_pred             HHHHHHcCCCeecCccHHHHHHHHHHHhc
Confidence               23344 36788999999999987764

>PRK14531 adenylate kinase; Provisional

Probab=97.42  E-value=0.0017  Score=53.84  Aligned_cols=85  Identities=9%  Similarity=0.146  Sum_probs=48.0

Q ss_pred             CCeEEEEccHHHHHHHH-------hhccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228        124 GKHCILDVSGNAIKRLQ-------VASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFT  190 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~-------~~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd  190 (225)
                      +.-.|||--|....+.+       ..+..| .+||+.+|. +.+. ++..|.    +++.+++|++...+.-.....+|.
T Consensus        79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~-~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~  157 (183)
T PRK14531         79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDD-AVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYR  157 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCH-HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45578886543322221       112233 578888875 5554 477665    356788888877432111112222


Q ss_pred             -----EEEECC-CHHHHHHHHHHHH
Q psy10228        191 -----AVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       191 -----~vI~Nd-dleea~~~lk~iI  209 (225)
                           +.|.++ +.++.+.+|...+
T Consensus       158 ~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        158 QRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHh
Confidence                 445554 7999999988765

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.42  E-value=0.00024  Score=58.76  Aligned_cols=15  Identities=7%  Similarity=-0.159  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +.+|+|.|+.||||+
T Consensus         3 g~~IvieG~~GsGKs   17 (195)
T TIGR00041         3 GMFIVIEGIDGAGKT   17 (195)
T ss_pred             ceEEEEECCCCCCHH
Confidence            357999999999999

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13946 shikimate kinase; Provisional

Probab=97.42  E-value=0.0017  Score=53.94  Aligned_cols=92  Identities=10%  Similarity=0.106  Sum_probs=50.2

Q ss_pred             HHHHHHHHHcCCeEEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHH-HHHhccCC------H--HHHHHHHHHH
Q psy10228        114 VASVRDVAEKGKHCILDV------SGNAIKRLQVASLYPVAIFIKPKSVESI-MEMNKRMT------E--EQAKKMYDRS  178 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L-~~L~~R~s------e--eei~~rl~~a  178 (225)
                      ...++++++.+. ||+..      .++..+.|+   -..++|||..|- +.+ +++..|..      +  .+.-+.+.+.
T Consensus        70 ~~~l~~l~~~~~-~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~-e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~  144 (184)
T PRK13946         70 RRVIARLLKGGP-LVLATGGGAFMNEETRAAIA---EKGISVWLKADL-DVLWERVSRRDTRPLLRTADPKETLARLMEE  144 (184)
T ss_pred             HHHHHHHHhcCC-eEEECCCCCcCCHHHHHHHH---cCCEEEEEECCH-HHHHHHhcCCCCCCcCCCCChHHHHHHHHHH
Confidence            445566666664 45443      222223332   245889999864 554 44665542      1  1211222222


Q ss_pred             HHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhcc
Q psy10228        179 MKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       179 ~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~~  213 (225)
                      .  +..|. .+|.+|..+  +++++++.|...|....
T Consensus       145 R--~~~y~-~~dl~i~~~~~~~~~~~~~i~~~i~~~~  178 (184)
T PRK13946        145 R--YPVYA-EADLTVASRDVPKEVMADEVIEALAAYL  178 (184)
T ss_pred             H--HHHHH-hCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            1  22333 378887654  68999999999887644

>PRK13947 shikimate kinase; Provisional

Probab=97.38  E-value=0.0038  Score=50.47  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             CeEEEEecCCHHHHH-HHhccC-----CHHHHHHHHHHHHH-HHHhhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIM-EMNKRM-----TEEQAKKMYDRSMK-MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~-~L~~R~-----seeei~~rl~~a~k-~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ..+|||..+. +.+. ++..|.     ...+..+++....+ ....| ..+|.+|..+  ++++++++|..+.-
T Consensus        95 ~~vv~L~~~~-~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y-~~ad~~Idt~~~~~~~i~~~I~~~~~  166 (171)
T PRK13947         95 GVVICLKARP-EVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDEVAEEIIKAYL  166 (171)
T ss_pred             CEEEEEECCH-HHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-HhcCEEEECCCCCHHHHHHHHHHHHH
Confidence            4689998854 5444 465442     11122222222111 01122 3568877743  68999999998433

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.38  E-value=0.0014  Score=54.53  Aligned_cols=82  Identities=11%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHh-----ccC-CHHHHHHHHHH-HHHHHH----hhCCCCcEE
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMN-----KRM-TEEQAKKMYDR-SMKMEQ----EFGEFFTAV  192 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~-----~R~-seeei~~rl~~-a~k~E~----~~~~~fd~v  192 (225)
                      ..++|++.-..+.. ....+..-.+|||.+|.-..+.++.     .|+ +.+++.+++.. ....+.    .+...+|+|
T Consensus        99 ~~~vI~eg~~~~~~-~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~i  177 (198)
T cd02023          99 ADVIILEGILALYD-KELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVI  177 (198)
T ss_pred             CCEEEEechhhccc-hhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEE
Confidence            34556554332221 1122445689999987644455522     233 44555444432 221221    234679999


Q ss_pred             EECC-CHHHHHHHHH
Q psy10228        193 VQGD-MPEDIYQKVK  206 (225)
Q Consensus       193 I~Nd-dleea~~~lk  206 (225)
                      |.|+ +.+++..-+.
T Consensus       178 i~~~~~~~~~~~~~~  192 (198)
T cd02023         178 IPRGGDNHVAIDLIV  192 (198)
T ss_pred             ECCCCCccHHHHHHH
Confidence            9876 4555555443

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00235 udk uridine kinase

Probab=97.35  E-value=0.00083  Score=56.67  Aligned_cols=70  Identities=11%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             ccCCeEEEEecCCHHHHHHHhcc-----C-CHHHHHHHHHHHHH-HH----HhhCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        143 SLYPVAIFIKPKSVESIMEMNKR-----M-TEEQAKKMYDRSMK-ME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~L~~R-----~-seeei~~rl~~a~k-~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      .....+|||.+|....+.++..|     + +.+++..+.....+ ..    ......+|.||.|+ +.+.+++-|..-|.
T Consensus       124 ~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~  203 (207)
T TIGR00235       124 DLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK  203 (207)
T ss_pred             HhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence            35668999999876666664333     3 34444333332211 11    12346789999866 67888887776665


Q ss_pred             hc
Q psy10228        211 EQ  212 (225)
Q Consensus       211 ~~  212 (225)
                      ..
T Consensus       204 ~~  205 (207)
T TIGR00235       204 HL  205 (207)
T ss_pred             Hh
Confidence            43

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14532 adenylate kinase; Provisional

Probab=97.31  E-value=0.00048  Score=56.91  Aligned_cols=151  Identities=17%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             EEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE------eCCccee--ecHHHHHHHHH--
Q psy10228         53 FMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ------YNDNLYG--TSVASVRDVAE--  122 (225)
Q Consensus        53 ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~------~~gn~YG--Ts~~sV~~v~~--  122 (225)
                      |+|+||+||||++.-.+-.   +.-|  +.++++-+-+.+.+..+.  +.+.      -.|..|.  +...-+.+.+.  
T Consensus         3 i~~~G~pGsGKsT~a~~la---~~~g--~~~is~~d~lr~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   75 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLV---EERG--MVQLSTGDMLRAAIASGS--ELGQRVKGIMDRGELVSDEIVIALIEERLPEA   75 (188)
T ss_pred             EEEECCCCCCHHHHHHHHH---HHcC--CeEEeCcHHHHHHHHcCC--HHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence            8999999999993322221   2223  345523344554443221  0110      0233332  12222333332  


Q ss_pred             -cCCeEEEEccHHH---HHH----HHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHH---
Q psy10228        123 -KGKHCILDVSGNA---IKR----LQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKME---  182 (225)
Q Consensus       123 -~gk~~ildv~~~g---vk~----L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E---  182 (225)
                       .+.-+|+|--|..   ++.    +...+..| .+|++..|....++++..|.        +++.+.+|+....+.-   
T Consensus        76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i  155 (188)
T PRK14532         76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL  155 (188)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             2456788854422   222    22334567 78899887644445576653        2566778887664211   


Q ss_pred             -HhhCC-CCcEEEEC-CCHHHHHHHHHHHHH
Q psy10228        183 -QEFGE-FFTAVVQG-DMPEDIYQKVKEVIQ  210 (225)
Q Consensus       183 -~~~~~-~fd~vI~N-ddleea~~~lk~iI~  210 (225)
                       ..|.. .....|.. .++++.+++|...|.
T Consensus       156 ~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence             12222 12233333 479999999988875

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.26  E-value=9.5e-05  Score=57.81  Aligned_cols=108  Identities=14%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE---EEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA---GQYNDNLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~---~~~~gn~YGTs~~sV~~v~~~gk~~i  128 (225)
                      +|+++||+|||||+..-+-.+   ..|  +.++ +.+.+...+.....-..   ....+..+..-...++..++.|..+|
T Consensus         1 lii~~G~pgsGKSt~a~~l~~---~~~--~~~i-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v   74 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK---RLG--AVVI-SQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVV   74 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH---HST--EEEE-EHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHH---HCC--CEEE-eHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence            489999999999922211110   011  6788 88888877765332211   11122344455567778889999999


Q ss_pred             EEcc---HHHHHHHHh----hccCCeEEEEecCCHHHHHH-HhccC
Q psy10228        129 LDVS---GNAIKRLQV----ASLYPVAIFIKPKSVESIME-MNKRM  166 (225)
Q Consensus       129 ldv~---~~gvk~L~~----~~~~Pi~IFI~pps~~~L~~-L~~R~  166 (225)
                      +|-.   ......+..    .+....+|++.++. +.+.+ +..|.
T Consensus        75 vd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~-~~~~~R~~~R~  119 (143)
T PF13671_consen   75 VDNTNLSREERARLRELARKHGYPVRVVYLDAPE-ETLRERLAQRN  119 (143)
T ss_dssp             EESS--SHHHHHHHHHHHHHCTEEEEEEEECHHH-HHHHHHHHTTH
T ss_pred             eccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCH-HHHHHHHHhcC
Confidence            9832   222222211    12223678888765 44443 66554

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.0017  Score=54.29  Aligned_cols=146  Identities=14%  Similarity=0.179  Sum_probs=76.3

Q ss_pred             EEEEccCCCCCC------------CcccC--CCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce-eecHHHH
Q psy10228         53 FMLCYTQDDPTT------------EDTTR--ARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY-GTSVASV  117 (225)
Q Consensus        53 ivl~GpsgsGK~------------s~TTR--p~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y-GTs~~sV  117 (225)
                      |+|+|||||||+            +|-+.  --|++-..+..     --.+....++.|+++     .++.+ |+-...+
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~-----lg~~~k~~i~~g~lv-----~d~i~~~~v~~rl   72 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTE-----LGEEIKKYIDKGELV-----PDEIVNGLVKERL   72 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCCh-----HHHHHHHHHHcCCcc-----chHHHHHHHHHHH
Confidence            799999999999            44431  11222222211     011222234445533     33334 4444444


Q ss_pred             HHHHHcCCeEEEEccHHHH---HHHHh----hccC-CeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHh
Q psy10228        118 RDVAEKGKHCILDVSGNAI---KRLQV----ASLY-PVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQE  184 (225)
Q Consensus       118 ~~v~~~gk~~ildv~~~gv---k~L~~----~~~~-Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~  184 (225)
                      ...-..+ .+|+|--|.-+   +.|+.    .+.. ..++.+.+|....+.++..|.     +++.+++|+....+....
T Consensus        73 ~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~p  151 (178)
T COG0563          73 DEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAP  151 (178)
T ss_pred             HhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccc
Confidence            4442223 67777654333   22322    1212 378999988733344566664     578889888877432111


Q ss_pred             hCCCCcEEEECC-CHHHHHHHHHHHH
Q psy10228        185 FGEFFTAVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       185 ~~~~fd~vI~Nd-dleea~~~lk~iI  209 (225)
                      ...+|...|... .+++.++.+...+
T Consensus       152 li~~y~~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         152 LIEYYSVTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             hhhhheeeccCCCCHHHHHHHHHHhh
Confidence            223444334433 6889888887765

>PRK13975 thymidylate kinase; Provisional

Probab=97.23  E-value=0.001  Score=54.97  Aligned_cols=71  Identities=13%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             CC-eEEEEecCCHHHHHHHhccCC----HHHHHHHHHHHH-HHHH--hhCCCCcEEEEC-C--CHHHHHHHHHHHHHhcc
Q psy10228        145 YP-VAIFIKPKSVESIMEMNKRMT----EEQAKKMYDRSM-KMEQ--EFGEFFTAVVQG-D--MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       145 ~P-i~IFI~pps~~~L~~L~~R~s----eeei~~rl~~a~-k~E~--~~~~~fd~vI~N-d--dleea~~~lk~iI~~~~  213 (225)
                      .| .+||+.++.-..++++..|..    ..+..+++.... ++..  .+.+.+..+++| +  ++++++++|.+.|....
T Consensus       113 ~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~  192 (196)
T PRK13975        113 KPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI  192 (196)
T ss_pred             CCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            45 678888764444445776652    223222332221 1111  122233344443 2  79999999999998776


Q ss_pred             CC
Q psy10228        214 GP  215 (225)
Q Consensus       214 ~~  215 (225)
                      +.
T Consensus       193 ~~  194 (196)
T PRK13975        193 PD  194 (196)
T ss_pred             Cc
Confidence            54

>PLN02200 adenylate kinase family protein

Probab=97.19  E-value=0.0018  Score=56.31  Aligned_cols=155  Identities=10%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE------eCCcceeec--HHHHHHHHH
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ------YNDNLYGTS--VASVRDVAE  122 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~------~~gn~YGTs--~~sV~~v~~  122 (225)
                      ..|+|+||+||||++.-.+-.+   .-|..  .+++-+-+.+.+..+...  +.      -.|..|...  ...+.+.++
T Consensus        44 ~ii~I~G~PGSGKsT~a~~La~---~~g~~--his~gdllR~~i~~~s~~--~~~i~~~~~~G~~vp~e~~~~~l~~~l~  116 (234)
T PLN02200         44 FITFVLGGPGSGKGTQCEKIVE---TFGFK--HLSAGDLLRREIASNSEH--GAMILNTIKEGKIVPSEVTVKLIQKEME  116 (234)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---HhCCe--EEEccHHHHHHHhccChh--HHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence            4689999999999944332221   11322  232334444433322110  00      013333321  112333333


Q ss_pred             c--CCeEEEEccHHHHHH---HHh-hccCC-eEEEEecCCHHHHHHHhccC------CHHHHHHHHHHHHHHHH----hh
Q psy10228        123 K--GKHCILDVSGNAIKR---LQV-ASLYP-VAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMKMEQ----EF  185 (225)
Q Consensus       123 ~--gk~~ildv~~~gvk~---L~~-~~~~P-i~IFI~pps~~~L~~L~~R~------seeei~~rl~~a~k~E~----~~  185 (225)
                      .  +...|||--|....+   +.. .+..| .+||+..|.-..+.++.+|.      +++.+++|++...+.-.    .|
T Consensus       117 ~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y  196 (234)
T PLN02200        117 SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY  196 (234)
T ss_pred             cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  345678865533322   211 23456 77888887644455576663      24677788876543222    22


Q ss_pred             CCCCc-EEEECC-CHHHHHHHHHHHHHhc
Q psy10228        186 GEFFT-AVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       186 ~~~fd-~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      ...-. ++|.++ ++++.++.|..++...
T Consensus       197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~  225 (234)
T PLN02200        197 SKKGKLYTINAVGTVDEIFEQVRPIFAAC  225 (234)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            22212 344444 7999999999988754

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.17  E-value=0.0039  Score=53.32  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      +-.+|+|.+|....++++..|  .+++++.+|++.-.- +.+.....|+||.|+  +++++..++.+++...
T Consensus       129 ~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~-~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        129 LKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQIS-DKEREKIADFVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-HHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence            456899998877777786655  378899888865321 123346789999987  5799999999888765

>PRK13808 adenylate kinase; Provisional

Probab=97.17  E-value=0.0038  Score=57.23  Aligned_cols=87  Identities=14%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             eEEEEccHHHHHHHH-------hhccCC-eEEEEecCCHHHHHHHhcc------------C--CHHHHHHHHHHHHHHHH
Q psy10228        126 HCILDVSGNAIKRLQ-------VASLYP-VAIFIKPKSVESIMEMNKR------------M--TEEQAKKMYDRSMKMEQ  183 (225)
Q Consensus       126 ~~ildv~~~gvk~L~-------~~~~~P-i~IFI~pps~~~L~~L~~R------------~--seeei~~rl~~a~k~E~  183 (225)
                      -.|||--|.-+.+..       ..++.| ++|||..|.-..+.++..|            .  +++.+.+|+....+...
T Consensus        80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~  159 (333)
T PRK13808         80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTE  159 (333)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhH
Confidence            357786553332222       223566 7888888765555566554            2  35778888866543211


Q ss_pred             ---h-hCCC-CcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        184 ---E-FGEF-FTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       184 ---~-~~~~-fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                         + |.+. .-++|..+ ++|+.+.+|..+|...
T Consensus       160 PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~  194 (333)
T PRK13808        160 PLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV  194 (333)
T ss_pred             HHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence               1 2221 11233333 7899999999999754

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.16  E-value=0.002  Score=54.74  Aligned_cols=66  Identities=9%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      ..+|+|.+|....+++|.+|.  +++++.+|++.....+ .....+|++|.|+ +++++..++..++...
T Consensus       135 d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~  203 (208)
T PRK14731        135 DFIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL  203 (208)
T ss_pred             CeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            466777776544455577664  6789999987653322 2235689999997 7999999999988754

>PRK14527 adenylate kinase; Provisional

Probab=97.13  E-value=0.0033  Score=52.29  Aligned_cols=63  Identities=16%  Similarity=0.317  Sum_probs=37.7

Q ss_pred             eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----hhCCC-CcEEEEC-CCHHHHHHHHHHHH
Q psy10228        147 VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ----EFGEF-FTAVVQG-DMPEDIYQKVKEVI  209 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~----~~~~~-fd~vI~N-ddleea~~~lk~iI  209 (225)
                      .+||+..|....+.++.+|.        +++.+++|++...+.-.    .|.+. .-..|.. .++++.+++|...|
T Consensus       114 ~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        114 AVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             EEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            46888887644444576664        35667888877643111    23221 2233443 37999999998765

>PRK03839 putative kinase; Provisional

Probab=97.09  E-value=0.017  Score=47.36  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH---cCCeEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE---KGKHCI  128 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~---~gk~~i  128 (225)
                      .|+|+|++|||||+.--+-.   +.-  .|.|+ +-+++-..   ..   ++...+...-.....+...+.   .+..+|
T Consensus         2 ~I~l~G~pGsGKsT~~~~La---~~~--~~~~i-d~d~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI   69 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLA---EKL--GYEYV-DLTEFALK---KG---IGEEKDDEMEIDFDKLAYFIEEEFKEKNVV   69 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHH---HHh--CCcEE-ehhhhhhh---cC---CcccCChhhhcCHHHHHHHHHHhccCCCEE
Confidence            48999999999992211111   111  34566 33333211   11   111111111122333433332   245577


Q ss_pred             EEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCC-HHHHH----HHHHHHHHHHHhhCCCCcEEEEC--CCHHHH
Q psy10228        129 LDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMT-EEQAK----KMYDRSMKMEQEFGEFFTAVVQG--DMPEDI  201 (225)
Q Consensus       129 ldv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~s-eeei~----~rl~~a~k~E~~~~~~fd~vI~N--ddleea  201 (225)
                      +|.....   +.   ....+||+.++....++++..|.. ...+.    ..+......+.-......++|..  .+++++
T Consensus        70 idG~~~~---l~---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev  143 (180)
T PRK03839         70 LDGHLSH---LL---PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEV  143 (180)
T ss_pred             EEecccc---cc---CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHH
Confidence            7754321   11   123678888754343445776652 22221    11111101111111222345554  379999


Q ss_pred             HHHHHHHHHhccCCc
Q psy10228        202 YQKVKEVIQEQSGPS  216 (225)
Q Consensus       202 ~~~lk~iI~~~~~~~  216 (225)
                      ++++..+|.....++
T Consensus       144 ~~~I~~~l~~~~~~~  158 (180)
T PRK03839        144 VEEILELIKSGKKRK  158 (180)
T ss_pred             HHHHHHHHhcCCCCC
Confidence            999999998765554

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.05  E-value=0.0054  Score=55.09  Aligned_cols=84  Identities=12%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             eEEEEccH--------HHHHHHHhhccCCeEEEEecCCHHHHH-HHhc-c-C----CHHHHHHHHHHHHHHHH-hhCCCC
Q psy10228        126 HCILDVSG--------NAIKRLQVASLYPVAIFIKPKSVESIM-EMNK-R-M----TEEQAKKMYDRSMKMEQ-EFGEFF  189 (225)
Q Consensus       126 ~~ildv~~--------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~-R-~----seeei~~rl~~a~k~E~-~~~~~f  189 (225)
                      .+++|+-.        +.+..|+..+....+||+.++. +.|. ++.. | .    ...++.+.+..- +... .+....
T Consensus        59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~-e~L~~Rl~~~rr~RPLl~~~~l~e~I~~e-R~~l~pl~~~A  136 (288)
T PRK05416         59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASD-EVLIRRYSETRRRHPLSGDGSLLEGIELE-RELLAPLRERA  136 (288)
T ss_pred             EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCH-HHHHHHHhhcccCCCccCCccHHHHHHHH-HhhhhhHHHhC
Confidence            45667632        2334444444444679999865 5554 4542 1 1    111111111111 1011 123457


Q ss_pred             cEEEECC--CHHHHHHHHHHHHHh
Q psy10228        190 TAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       190 d~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      |++|.++  +++++.++|...+..
T Consensus       137 DivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        137 DLVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhc
Confidence            8999876  689999999998865

>PRK06696 uridine kinase; Validated

Probab=97.03  E-value=0.0037  Score=53.43  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=39.5

Q ss_pred             HcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc-----CCH-HHHHHHHHHHHHHHHhh------CCCC
Q psy10228        122 EKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR-----MTE-EQAKKMYDRSMKMEQEF------GEFF  189 (225)
Q Consensus       122 ~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R-----~se-eei~~rl~~a~k~E~~~------~~~f  189 (225)
                      ..+.++|+|.-  .+..-....++..+|||.+|.-..++++..|     ++. +.......+....|..|      ....
T Consensus       126 ~~~~vviveg~--~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~~~p~~~A  203 (223)
T PRK06696        126 APNAVLIVDGT--FLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAEANPKERA  203 (223)
T ss_pred             CCCCEEEEecH--HHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhhcChHhhC
Confidence            34556665543  2212222345678999999875445554443     332 22222222222222333      3579


Q ss_pred             cEEEECCCHH
Q psy10228        190 TAVVQGDMPE  199 (225)
Q Consensus       190 d~vI~Nddle  199 (225)
                      |+||.|++++
T Consensus       204 Divi~n~~~~  213 (223)
T PRK06696        204 DVVIDNSDPA  213 (223)
T ss_pred             eEEEECCCCC
Confidence            9999998754

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=96.99  E-value=0.0051  Score=54.01  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             CeEEEEccHHHHHHHHhhc----cCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC--
Q psy10228        125 KHCILDVSGNAIKRLQVAS----LYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD--  196 (225)
Q Consensus       125 k~~ildv~~~gvk~L~~~~----~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd--  196 (225)
                      ..|++|+-.     |-.++    +...+|+|.+|....+++|.+|.  +++++.+|++.... ..+....+|+||.|+  
T Consensus       118 ~~vv~evPL-----L~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~-~~ek~~~aD~VI~N~~~  191 (244)
T PTZ00451        118 LIVVLDAPT-----LFETKTFTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMP-LEEKRRLADYIIENDSA  191 (244)
T ss_pred             CEEEEEech-----hhccCchhhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-HHHHHHhCCEEEECCCC
Confidence            478888764     22222    33578999887666666776663  78999999876322 233457899999998  


Q ss_pred             -CHHHHHHHHHHHHHhc
Q psy10228        197 -MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 -dleea~~~lk~iI~~~  212 (225)
                       |++++..++..++...
T Consensus       192 g~~~~L~~~v~~~~~~~  208 (244)
T PTZ00451        192 DDLDELRGSVCDCVAWM  208 (244)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence             7999999999988653

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.98  E-value=0.0003  Score=63.53  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             ccEEEEccCCCCCC-------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE-E
Q psy10228         51 EPFMLCYTQDDPTT-------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG-Q  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~-~  104 (225)
                      .+|+|+||+|||||                         +..|-+|-..|..|+.||++ +            +++-. .
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhli-d------------~~~p~e~   71 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLV-D------------FLEPIKE   71 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeee-e------------ccCCCCc
Confidence            37999999999999                         77888888889999999998 3            22222 2


Q ss_pred             eC-CcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228        105 YN-DNLYGTSVASVRDVAEKGKHCILDVSGNA  135 (225)
Q Consensus       105 ~~-gn~YGTs~~sV~~v~~~gk~~ildv~~~g  135 (225)
                      |+ +.+.--..+.|+++...|+.+|+. .+.|
T Consensus        72 ~sv~~f~~~a~~~i~~i~~~gk~Pilv-GGTg  102 (300)
T PRK14729         72 YNLGIFYKEALKIIKELRQQKKIPIFV-GGSA  102 (300)
T ss_pred             eeHHHHHHHHHHHHHHHHHCCCCEEEE-eCch
Confidence            33 455667788899999999987764 4444

>TIGR01351 adk adenylate kinases

Probab=96.97  E-value=0.0075  Score=50.94  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHH----HHhhCCCCcEEEEC--CCHHHHHHHHHHHH
Q psy10228        168 EEQAKKMYDRSMKM----EQEFGEFFTAVVQG--DMPEDIYQKVKEVI  209 (225)
Q Consensus       168 eeei~~rl~~a~k~----E~~~~~~fd~vI~N--ddleea~~~lk~iI  209 (225)
                      ++.+++|+....+.    ...|....-++.+|  .++++.++.|.++|
T Consensus       162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            57788888886431    11222221233333  37999999998876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK13948 shikimate kinase; Provisional

Probab=96.97  E-value=0.013  Score=49.05  Aligned_cols=146  Identities=13%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEEeCCccee--ecHHHHHHHHHcCCe
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQYNDNLYG--TSVASVRDVAEKGKH  126 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~~~gn~YG--Ts~~sV~~v~~~gk~  126 (225)
                      ...|+|+|.+|||||+.--+-.   +.-  .+.||++...+++..  |.-+ +...-.|..|-  .-.+.+++++..+ .
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La---~~l--g~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~   81 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELS---RAL--MLHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-Y   81 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH---HHc--CCCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-C
Confidence            4689999999999992211110   001  234663333333322  1000 00001121111  2223355555544 3


Q ss_pred             EEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC----C----HHHHHHHHHHHHHHHHhhCCCCcE
Q psy10228        127 CILDV------SGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM----T----EEQAKKMYDRSMKMEQEFGEFFTA  191 (225)
Q Consensus       127 ~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~----s----eeei~~rl~~a~k~E~~~~~~fd~  191 (225)
                      +|+.+      +++..+.|+.   ...+|||..+ .+.|.+ +..+.    .    .+++.+.+++-   +.-| ...|+
T Consensus        82 ~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R---~~~Y-~~a~~  153 (182)
T PRK13948         82 AVISLGGGTFMHEENRRKLLS---RGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLNER---EPVY-RQATI  153 (182)
T ss_pred             eEEECCCcEEcCHHHHHHHHc---CCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHHHH---HHHH-HhCCE
Confidence            45543      4444444542   3568899865 566654 64321    1    12344333321   3345 34899


Q ss_pred             EEECC--CHHHHHHHHHHHHHh
Q psy10228        192 VVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       192 vI~Nd--dleea~~~lk~iI~~  211 (225)
                      +|.++  +.++++.+|.+.+..
T Consensus       154 ~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        154 HVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             EEECCCCCHHHHHHHHHHHHHH
Confidence            98866  588999999888865

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.94  E-value=0.017  Score=48.97  Aligned_cols=45  Identities=11%  Similarity=0.202  Sum_probs=27.4

Q ss_pred             CHHHHHHHHHHHHHH----HHhhCCCCcEE-EEC-CCHHHHHHHHHHHHHh
Q psy10228        167 TEEQAKKMYDRSMKM----EQEFGEFFTAV-VQG-DMPEDIYQKVKEVIQE  211 (225)
Q Consensus       167 seeei~~rl~~a~k~----E~~~~~~fd~v-I~N-ddleea~~~lk~iI~~  211 (225)
                      +++.+++||....+.    ...|.+..-++ |.. .+.++.+..|..+|..
T Consensus       164 ~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        164 NEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            367889998876532    12232221133 332 3799999999998864

>KOG1384|consensus

Probab=96.93  E-value=0.0012  Score=60.06  Aligned_cols=80  Identities=11%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228         50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG  103 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~  103 (225)
                      ..++||+|++||||+                          ..+|-++=..|..|+.+|-+ ..-..+...         
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLl-g~l~~~~e~---------   76 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLL-GHLHPEAEY---------   76 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHh-CcCChHhhc---------
Confidence            458999999999998                          77888888889999998865 332222221         


Q ss_pred             EeCCcceeecHHHHHHHHHcCCeEEEEcc-HHHHHHHH
Q psy10228        104 QYNDNLYGTSVASVRDVAEKGKHCILDVS-GNAIKRLQ  140 (225)
Q Consensus       104 ~~~gn~YGTs~~sV~~v~~~gk~~ildv~-~~gvk~L~  140 (225)
                       ..+.++-+...+|++++..|+..|+.-. .-.++.|-
T Consensus        77 -t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~  113 (348)
T KOG1384|consen   77 -TAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALL  113 (348)
T ss_pred             -cHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHh
Confidence             2345677789999999999999887643 34444443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.91  E-value=0.0051  Score=52.75  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=36.1

Q ss_pred             cCCeEEEEecCCHHHHHHHhcc-----CCHHHHHHHHHHHH--HH--HHhhCCCCcEEEECCC
Q psy10228        144 LYPVAIFIKPKSVESIMEMNKR-----MTEEQAKKMYDRSM--KM--EQEFGEFFTAVVQGDM  197 (225)
Q Consensus       144 ~~Pi~IFI~pps~~~L~~L~~R-----~seeei~~rl~~a~--k~--E~~~~~~fd~vI~Ndd  197 (225)
                      ..-.+|||.+|....++++..|     .+++++.+++...+  ..  ........|+||.|+.
T Consensus       160 ~~D~vi~v~~~~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~  222 (229)
T PRK09270        160 LFDFTIFLDAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA  222 (229)
T ss_pred             hCCEEEEEECCHHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence            4458899999876666665555     37888888886421  11  1234578999999874

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.91  E-value=0.0012  Score=54.04  Aligned_cols=148  Identities=10%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             CccEEEEccCCCCCCC------cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHH-HH
Q psy10228         50 QEPFMLCYTQDDPTTE------DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRD-VA  121 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~-v~  121 (225)
                      ...|+|+|++|||||+      ...++      .|.+..|+ +.+.+.+.+..+.-  +..-. ...+... ..+.. ..
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~------~g~~v~~i-d~D~~~~~~~~~~~--~~~~~r~~~~~~~-~~~a~~~~   73 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLRE------AGYPVEVL-DGDAVRTNLSKGLG--FSKEDRDTNIRRI-GFVANLLT   73 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEE-cCccHHHHHhcCCC--CChhhHHHHHHHH-HHHHHHHH
Confidence            3489999999999991      11111      24556777 45555443322110  00000 0001100 11111 23


Q ss_pred             HcCCeEEEEcc-H--HHHHHHHhhccCCeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhC-CCCcEE
Q psy10228        122 EKGKHCILDVS-G--NAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFG-EFFTAV  192 (225)
Q Consensus       122 ~~gk~~ildv~-~--~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~-~~fd~v  192 (225)
                      ..|.+|+++.. +  ...+.++...-...+|||..| .+.+.+-..|.     ..+++..++...   +.-+. ...|.+
T Consensus        74 ~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~i~~~~~~~---~~~~~p~~ad~~  149 (175)
T PRK00889         74 RHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQRDVKGLYAKARAGEIKHFTGID---DPYEPPLNPEVE  149 (175)
T ss_pred             hCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHhCcccHHHHHHcCCCCCCcccC---CCCCCCCCCcEE
Confidence            55888887743 2  222333322112367889876 45443211110     001111111110   11122 235676


Q ss_pred             EECC--CHHHHHHHHHHHHHh
Q psy10228        193 VQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       193 I~Nd--dleea~~~lk~iI~~  211 (225)
                      |..+  +++++++++.+.|..
T Consensus       150 i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        150 CRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             EECCCCCHHHHHHHHHHHHHH
Confidence            6543  699999999999875

>PLN02422 dephospho-CoA kinase

Probab=96.89  E-value=0.0084  Score=52.30  Aligned_cols=89  Identities=19%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             CeEEEEccHHHHHHHHhhc---cCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228        125 KHCILDVSGNAIKRLQVAS---LYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP  198 (225)
Q Consensus       125 k~~ildv~~~gvk~L~~~~---~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl  198 (225)
                      +.+++|+-.     |-..+   .+-.+|||.+|....+++|.+|  .+.+++.+|+++-.-.| ......|++|.|+ ++
T Consensus       108 ~~vv~eipL-----L~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~e-ek~~~AD~VI~N~gs~  181 (232)
T PLN02422        108 KVIVLDIPL-----LFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINAQMPLD-WKRSKADIVIDNSGSL  181 (232)
T ss_pred             CEEEEEehh-----hhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChh-HHHhhCCEEEECCCCH
Confidence            467777654     22222   3457899999876666677665  37899988886532111 2246789999998 89


Q ss_pred             HHHHHHHHHHHHhccCCceee
Q psy10228        199 EDIYQKVKEVIQEQSGPSIWV  219 (225)
Q Consensus       199 eea~~~lk~iI~~~~~~~~WV  219 (225)
                      +++..++..+++....|-.|-
T Consensus       182 e~L~~qv~~ll~~l~~~~~~~  202 (232)
T PLN02422        182 EDLKQQFQKVLEKIRAPLTWK  202 (232)
T ss_pred             HHHHHHHHHHHHHHhcchHHH
Confidence            999999999999988888884

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.88  E-value=0.0084  Score=54.06  Aligned_cols=154  Identities=12%  Similarity=0.160  Sum_probs=76.6

Q ss_pred             CCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE-EE-EeCC-cceeecHHHHHHHHHc
Q psy10228         47 GSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE-AG-QYND-NLYGTSVASVRDVAEK  123 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE-~~-~~~g-n~YGTs~~sV~~v~~~  123 (225)
                      .+....|+|+|++||||++.--.-   .|.-|.  .|++....+++.  .|.-+. .. .++. .+.-.-...+.+.+..
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~L---a~~Lg~--~~id~D~~i~~~--~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~  202 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRML---AARLGV--PFVELNREIERE--AGLSVSEIFALYGQEGYRRLERRALERLIAE  202 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHH---HHHcCC--CEEeHHHHHHHH--hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence            344568999999999999211110   011133  344223333322  111000 00 0111 1222333445555554


Q ss_pred             CCeEEEEccHHH------HHHHHhhccCCeEEEEecCCHHHHHHHhccC------C----HHHHHHHHHHHHHHHHhhCC
Q psy10228        124 GKHCILDVSGNA------IKRLQVASLYPVAIFIKPKSVESIMEMNKRM------T----EEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       124 gk~~ildv~~~g------vk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~------s----eeei~~rl~~a~k~E~~~~~  187 (225)
                      ...+|+...+..      ...+.   ...++|||.+|--..++++.+|.      +    .+.++++...-   +.-| .
T Consensus       203 ~~~~VI~~Ggg~v~~~~~~~~l~---~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R---~~~y-~  275 (309)
T PRK08154        203 HEEMVLATGGGIVSEPATFDLLL---SHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR---EPLY-A  275 (309)
T ss_pred             CCCEEEECCCchhCCHHHHHHHH---hCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH---HHHH-H
Confidence            444565543221      12222   24578999987433344565543      1    24454443322   2222 4


Q ss_pred             CCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228        188 FFTAVVQGD--MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       188 ~fd~vI~Nd--dleea~~~lk~iI~~~~~  214 (225)
                      .+|++|.|+  ++++++++|..+|...-+
T Consensus       276 ~ad~~I~t~~~s~ee~~~~I~~~l~~~~~  304 (309)
T PRK08154        276 RADAVVDTSGLTVAQSLARLRELVRPALG  304 (309)
T ss_pred             hCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            589988877  689999999999876533

>PLN02924 thymidylate kinase

Probab=96.81  E-value=0.0051  Score=53.02  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=49.7

Q ss_pred             HHHHHHHHHcCCeEEEEccHH------H--------HHHHHhhccCC-eEEEEecCCHHHHHHHhccCC---HHHHHHHH
Q psy10228        114 VASVRDVAEKGKHCILDVSGN------A--------IKRLQVASLYP-VAIFIKPKSVESIMEMNKRMT---EEQAKKMY  175 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~~~------g--------vk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~s---eeei~~rl  175 (225)
                      ...|...++.|+++|+|=-..      +        +..+...-..| ++||+..|--..+++...+..   ..+..+++
T Consensus        90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv  169 (220)
T PLN02924         90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKV  169 (220)
T ss_pred             HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHH
Confidence            355777888999999984221      1        11122111236 788888754333433332221   22333444


Q ss_pred             HHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        176 DRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       176 ~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      ..+.   +.+...-..+|.++ ++++..++|.++|..
T Consensus       170 ~~~Y---~~la~~~~~vIDa~~sieeV~~~I~~~I~~  203 (220)
T PLN02924        170 AKRF---QTLRDSSWKIIDASQSIEEVEKKIREVVLD  203 (220)
T ss_pred             HHHH---HHHhhcCEEEECCCCCHHHHHHHHHHHHHH
Confidence            4432   12222222344333 799999999888876

>PLN02748 tRNA dimethylallyltransferase

Probab=96.80  E-value=0.00063  Score=64.94  Aligned_cols=72  Identities=8%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             CCCCCccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228         46 DGSDQEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF   99 (225)
Q Consensus        46 ~~~~~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F   99 (225)
                      .++...+|+|+||+|||||                          +..|-+|-..|..|+.||++ +            +
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLi-d------------~   84 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLL-G------------V   84 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeE-e------------e
Confidence            4455668999999999999                          67888888889999999998 3            3


Q ss_pred             EEEE-EeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228        100 IEAG-QYN-DNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       100 iE~~-~~~-gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      +... .|+ +.+.--....|+++..+|+.+||.
T Consensus        85 v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlV  117 (468)
T PLN02748         85 ISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIV  117 (468)
T ss_pred             cCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3222 132 455666788899999999987765

>PRK13973 thymidylate kinase; Provisional

Probab=96.73  E-value=0.011  Score=50.34  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCeEEEEccH------HH---------HHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC-------H
Q psy10228        115 ASVRDVAEKGKHCILDVSG------NA---------IKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT-------E  168 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~~------~g---------vk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s-------e  168 (225)
                      ..|...+++|+++|.|--.      +|         +..|...   ...| .+||+..|.-..++++.+|..       +
T Consensus        80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e  159 (213)
T PRK13973         80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFE  159 (213)
T ss_pred             HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchh
Confidence            3466678889999988421      11         2223221   1346 788998875444555666531       1


Q ss_pred             ----HHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        169 ----EQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       169 ----eei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                          +-.+++.+...++--.+...+ .+|.++ ++++..++|..+|...
T Consensus       160 ~~~~~~~~~~~~~y~~l~~~~~~~~-~~Ida~~~~e~V~~~I~~~i~~~  207 (213)
T PRK13973        160 KEDLAFHEKRREAFLQIAAQEPERC-VVIDATASPEAVAAEIWAAVDQR  207 (213)
T ss_pred             hchHHHHHHHHHHHHHHHHhCCCcE-EEEcCCCCHHHHHHHHHHHHHHH
Confidence                111222222211100111111 334433 7999999999998753

>PRK06761 hypothetical protein; Provisional

Probab=96.71  E-value=0.014  Score=52.31  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             ccEEEEccCCCCCC-----------------CcccC--CCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTR--ARREYEVDGRDYHFVSSREQMEKDIQNHLF   99 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTR--p~R~~E~dG~dY~FV~s~eef~~~i~~~~F   99 (225)
                      .+|+|+||+|||||                 .+++.  ++++.|..|..| |  +.++|...++....
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~-~--~~eer~~~l~~~~~   68 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVAC-F--TKEEFDRLLSNYPD   68 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccC-C--CHHHHHHHHHhhhH
Confidence            57999999999999                 12322  346677877554 3  67888777755544

>PRK14528 adenylate kinase; Provisional

Probab=96.71  E-value=0.0036  Score=52.19  Aligned_cols=150  Identities=13%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCC--------cEEEEEEeCCcceeecHHHHHHHHHc
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNH--------LFIEAGQYNDNLYGTSVASVRDVAEK  123 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~--------~FiE~~~~~gn~YGTs~~sV~~v~~~  123 (225)
                      -|+|+||+||||++...+-.   +.-|..+..  .-+-+...++.+        .|++.|......  +....+.+.+.+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la---~~~~~~~is--~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~--~~~~~~~~~l~~   75 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILC---ERLSIPQIS--TGDILREAVKNQTAMGIEAKRYMDAGDLVPDS--VVIGIIKDRIRE   75 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHH---HHhCCCeee--CCHHHHHHhhcCCHHHHHHHHHHhCCCccCHH--HHHHHHHHHHhC
Confidence            48999999999983332221   122332222  334444444333        122222111100  112233443333


Q ss_pred             ---CCeEEEEccHHH---HHHHHh----hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH-
Q psy10228        124 ---GKHCILDVSGNA---IKRLQV----ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ-  183 (225)
Q Consensus       124 ---gk~~ildv~~~g---vk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~-  183 (225)
                         ..-.|+|--|..   +..|..    .+..| .+|++.+|.-..+.++..|.        +++.+++|++...+.-. 
T Consensus        76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p  155 (186)
T PRK14528         76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP  155 (186)
T ss_pred             cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence               233577754422   222221    12234 68889988655555676652        46789999988753211 


Q ss_pred             ---hhCC-CCcEEEEC-CCHHHHHHHHHHH
Q psy10228        184 ---EFGE-FFTAVVQG-DMPEDIYQKVKEV  208 (225)
Q Consensus       184 ---~~~~-~fd~vI~N-ddleea~~~lk~i  208 (225)
                         .|.. ..-+.|.. .+.++.+..|...
T Consensus       156 v~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        156 LLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence               2221 12233443 3788888887653

>KOG3812|consensus

Probab=96.70  E-value=0.0078  Score=55.15  Aligned_cols=89  Identities=20%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             CeEEEEccH-HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCCH--HHHHHHHHHHHHHHHhhCCCCcEEEECCCHHH
Q psy10228        125 KHCILDVSG-NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMTE--EQAKKMYDRSMKMEQEFGEFFTAVVQGDMPED  200 (225)
Q Consensus       125 k~~ildv~~-~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~se--eei~~rl~~a~k~E~~~~~~fd~vI~Nddlee  200 (225)
                      ..++||.+. +-=..|.+..+.||++||+..|.++|.+ ++.|++.  ..+...+-.+.+++|--.+.||.||.-+-+++
T Consensus       263 qLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLed  342 (475)
T KOG3812|consen  263 QLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLED  342 (475)
T ss_pred             eEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHH
Confidence            356677542 2122466667899999999999999999 7778742  22333334455677766789999999888999


Q ss_pred             HHHHHHHHHHhcc
Q psy10228        201 IYQKVKEVIQEQS  213 (225)
Q Consensus       201 a~~~lk~iI~~~~  213 (225)
                      |++.|.+.++...
T Consensus       343 Acehla~yLEaYw  355 (475)
T KOG3812|consen  343 ACEHLAEYLEAYW  355 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.66  E-value=0.019  Score=47.80  Aligned_cols=87  Identities=14%  Similarity=0.213  Sum_probs=47.3

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHH-HHHHHHHHHHHH-Hh----h------CCCC
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQ-AKKMYDRSMKME-QE----F------GEFF  189 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seee-i~~rl~~a~k~E-~~----~------~~~f  189 (225)
                      ...||++--..|.  +-. ....+.||+.+|-.-..++..+|-  +-++ .++...|- +.| +.    |      ...|
T Consensus        73 ~~nvVlegrLA~W--i~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE-~se~kRY~~~YgIDidDlSiy  148 (179)
T COG1102          73 EGNVVLEGRLAGW--IVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE-ESEKKRYKKIYGIDIDDLSIY  148 (179)
T ss_pred             cCCeEEhhhhHHH--Hhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHhCCCCccceee
Confidence            4567777555553  211 223378999998545455555553  3222 22222222 111 11    2      2467


Q ss_pred             cEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228        190 TAVVQGD--MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       190 d~vI~Nd--dleea~~~lk~iI~~~~~  214 (225)
                      |.||.-.  +.++.+.-|...|...+.
T Consensus       149 DLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         149 DLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             EEEEecccCCHHHHHHHHHHHHHhhcc
Confidence            8877644  688888888888776554

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.62  E-value=0.036  Score=44.82  Aligned_cols=64  Identities=8%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             CCeEEEEecCCHHHHHHHhccC----------C--HHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        145 YPVAIFIKPKSVESIMEMNKRM----------T--EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R~----------s--eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      ..++|||..|....++++..|.          .  .+++.+.+.+-   ...|....+++|.++ +.++.++++..++.+
T Consensus        94 ~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r---~~~y~~~a~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731         94 NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER---EALYREVAHHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH---HHHHHHhCCEEEcCCCCHHHHHHHHHHHHhc
Confidence            4478999886544445565441          1  23333333321   123334456777655 689999999888753

>PLN02165 adenylate isopentenyltransferase

Probab=96.58  E-value=0.0062  Score=55.82  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             CCccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE
Q psy10228         49 DQEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA  102 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~  102 (225)
                      .+.+|+|+||+|||||                          ..+|-+|-..|..|..||.+ +.          -+.+.
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli-~~----------~~~~~  110 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLL-GE----------LNPDD  110 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhh-he----------ecccc
Confidence            3568999999999999                          44555665667778777766 20          11222


Q ss_pred             EEeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228        103 GQYN-DNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       103 ~~~~-gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      +.|+ +.+.--....|.++.++|+.+|+.
T Consensus       111 ~~~sv~~F~~~a~~~I~~i~~~~~~PI~v  139 (334)
T PLN02165        111 GELTASEFRSLASLSISEITSRQKLPIVA  139 (334)
T ss_pred             ceeeHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence            2232 344445567788888899987764

>PRK13949 shikimate kinase; Provisional

Probab=96.57  E-value=0.041  Score=45.26  Aligned_cols=13  Identities=15%  Similarity=-0.008  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|+|+|++|||||
T Consensus         3 ~I~liG~~GsGKs   15 (169)
T PRK13949          3 RIFLVGYMGAGKT   15 (169)
T ss_pred             EEEEECCCCCCHH
Confidence            4899999999999

>KOG3209|consensus

Probab=96.53  E-value=0.00085  Score=66.17  Aligned_cols=48  Identities=33%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHH
Q psy10228         65 EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVA  115 (225)
Q Consensus        65 s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~  115 (225)
                      ++|||+++++|++  ||.|. +...|...-..|-|+|.+.|.+|||||++.
T Consensus        68 ~~~~~~~~~~~~~--d~~fs-~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP  115 (984)
T KOG3209|consen   68 PCTTRRILEGEVP--DYSFS-TVPIFLCLEVSGCLLEFGTYESNYYGTPKP  115 (984)
T ss_pred             ccccccccccccC--ccccc-cchhhheeeecceeecccCcccCCCCCCCC
Confidence            9999999999999  99999 899999999999999999999999999976

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.45  E-value=0.058  Score=48.88  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             HHHHHHcCCeEEEE---ccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC------CHHHHHHHHHHHHH----
Q psy10228        117 VRDVAEKGKHCILD---VSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM------TEEQAKKMYDRSMK----  180 (225)
Q Consensus       117 V~~v~~~gk~~ild---v~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~------seeei~~rl~~a~k----  180 (225)
                      |..++++|...|++   +.|.-++...  ..+|  +.+.+...+.+.+++ +..|.      .+.-+ +-++....    
T Consensus       183 I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~-~~~~~ir~iq~~  259 (301)
T PRK04220        183 IERALKEGISVIIEGVHIVPGFIKEKY--LENPNVFMFVLTLSDEEAHKARFYARARVSRRPAERYL-KNFEIIREINDY  259 (301)
T ss_pred             HHHHHHhCCcEEEecCCCCHHHHHHhh--hcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHH-HHHHHHHHHHHH
Confidence            55566789988876   4554443321  2234  344455567666654 43332      11110 11121111    


Q ss_pred             -HHHhhCCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        181 -MEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       181 -~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                       +|+.-.+.+. +|.|.|++++++++.++|.+.
T Consensus       260 l~~~a~~~~ip-~I~n~~i~~s~~~~~~~i~~~  291 (301)
T PRK04220        260 IVEKAKKHGVP-VIENISIEETVDKILEIITER  291 (301)
T ss_pred             HHHHHHHhCCC-eecCccHHHHHHHHHHHHHHH
Confidence             1111123333 378899999999998887653

>PLN02674 adenylate kinase

Probab=96.44  E-value=0.0091  Score=52.45  Aligned_cols=42  Identities=12%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCC-----cEEEEC-CCHHHHHHHHHHHH
Q psy10228        168 EEQAKKMYDRSMKMEQEFGEFF-----TAVVQG-DMPEDIYQKVKEVI  209 (225)
Q Consensus       168 eeei~~rl~~a~k~E~~~~~~f-----d~vI~N-ddleea~~~lk~iI  209 (225)
                      ++.+++||+...+.-.....+|     -+.|.. .++++.++.|..++
T Consensus       196 ~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        196 AAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            6788999988753211111222     233443 37999999998876

>PLN02348 phosphoribulokinase

Probab=96.43  E-value=0.012  Score=55.10  Aligned_cols=37  Identities=14%  Similarity=-0.138  Sum_probs=23.3

Q ss_pred             ceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228         28 FSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~   64 (225)
                      .+++.+-|+-...-......+...+|-|.|+||||||
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~IIGIaG~SGSGKS   63 (395)
T PLN02348         27 GSRRSKSPAASSVVVALAADDGTVVIGLAADSGCGKS   63 (395)
T ss_pred             ccccccCchhHHHHHhhccCCCCEEEEEECCCCCCHH
Confidence            3455566655444433333344456679999999999

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.43  E-value=0.00075  Score=60.00  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV  131 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv  131 (225)
                      +|||+|.+|||||+...+-...-+..|.+.+.| +.+.+.  +..+.|. -.......-|.-+++|+..+.++.++|+| 
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i-~~~~~~--~~~~~y~-~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D-   77 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVII-SDDSLG--IDRNDYA-DSKKEKEARGSLKSAVERALSKDTIVILD-   77 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE--THHHH---TTSSS---GGGHHHHHHHHHHHHHHHHTT-SEEEE--
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE-cccccc--cchhhhh-chhhhHHHHHHHHHHHHHhhccCeEEEEe-
Confidence            689999999999911111110001155667778 655555  4444422 11111234477788889999889888888 


Q ss_pred             cHHHHHHHHhh-----c--cCC-eEEEEecCCHHHHHHH-hcc-----CCHHHHHHHHHHHHHHHH-h---hCCCCcEEE
Q psy10228        132 SGNAIKRLQVA-----S--LYP-VAIFIKPKSVESIMEM-NKR-----MTEEQAKKMYDRSMKMEQ-E---FGEFFTAVV  193 (225)
Q Consensus       132 ~~~gvk~L~~~-----~--~~P-i~IFI~pps~~~L~~L-~~R-----~seeei~~rl~~a~k~E~-~---~~~~fd~vI  193 (225)
                      +.+-++-+++.     .  ..+ .+||+..|- +...+. ..|     .+++-+.++..|-   |. .   -++...++|
T Consensus        78 d~nYiKg~RYelyclAr~~~~~~c~i~~~~~~-e~~~~~N~~R~~~~~~~~e~i~~m~~Rf---E~P~~~nrWD~plf~i  153 (270)
T PF08433_consen   78 DNNYIKGMRYELYCLARAYGTTFCVIYCDCPL-ETCLQRNSKRPEPERYPEETIDDMIQRF---EEPDPKNRWDSPLFTI  153 (270)
T ss_dssp             S---SHHHHHHHHHHHHHTT-EEEEEEEE--H-HHHHHHHHHTT-S--S-HHHHHHHHHH------TTSS-GGGS-SEEE
T ss_pred             CCchHHHHHHHHHHHHHHcCCCEEEEEECCCH-HHHHHhhhccCCCCCCCHHHHHHHHHHh---cCCCCCCCccCCeEEE
Confidence            55445445431     1  122 679999874 444432 122     3466666665554   32 1   123445666


Q ss_pred             ECCC----HHHHHHHH
Q psy10228        194 QGDM----PEDIYQKV  205 (225)
Q Consensus       194 ~Ndd----leea~~~l  205 (225)
                      .+++    +++.++.|
T Consensus       154 ~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  154 DSSDEELPLEEIWNAL  169 (270)
T ss_dssp             E-TTS---HHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHH
Confidence            7433    44555444

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.40  E-value=0.014  Score=46.02  Aligned_cols=49  Identities=10%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             CCeEEEEecCCHHHHH-HHhccC-----CH---HHHHHHHHHHHHHHHhhCCCCcEEEECCC
Q psy10228        145 YPVAIFIKPKSVESIM-EMNKRM-----TE---EQAKKMYDRSMKMEQEFGEFFTAVVQGDM  197 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~-~L~~R~-----se---eei~~rl~~a~k~E~~~~~~fd~vI~Ndd  197 (225)
                      .-++|||..| .+.+. ++..|.     +.   +.+..++.+-   ...|...+|++|..++
T Consensus        92 ~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r---~~~Y~~~ad~~i~~~~  149 (154)
T cd00464          92 NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEER---EPLYREVADLTIDTDE  149 (154)
T ss_pred             CCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHH---HHHHHHhCcEEEECCC
Confidence            3478999987 45554 466553     21   2344444432   3456667999987664

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=96.39  E-value=0.0048  Score=50.96  Aligned_cols=53  Identities=21%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             cCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECCC
Q psy10228        144 LYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDM  197 (225)
Q Consensus       144 ~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Ndd  197 (225)
                      ..-.+|||.+|....++++..|  .+.+++.+|+..... ........|+||.|+.
T Consensus       121 ~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~Q~~-~~~~~~~aD~vI~N~~  175 (179)
T cd02022         121 LVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIASQMP-LEEKRARADFVIDNSG  175 (179)
T ss_pred             hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCC-HHHHHHhCCEEEECcC
Confidence            3457899999876777776555  378888888887532 2234568999999983

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.37  E-value=0.0094  Score=49.02  Aligned_cols=65  Identities=11%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             CC-eEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHHHHH----hhCCCCc-EEEECC-CHHHHHHHHHHHH
Q psy10228        145 YP-VAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMKMEQ----EFGEFFT-AVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       145 ~P-i~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k~E~----~~~~~fd-~vI~Nd-dleea~~~lk~iI  209 (225)
                      .| .+|++.+|....+.++..|.    +++.+++|++...+...    .|...-- ..|..+ ++++...+|...|
T Consensus       107 ~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        107 SGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             CCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            45 67888887544444577665    35677788877643111    2221112 334433 7999999998876

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.31  E-value=0.011  Score=50.70  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc--EE---EEEEeCCc
Q psy10228         50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL--FI---EAGQYNDN  108 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~--Fi---E~~~~~gn  108 (225)
                      +.+|+|=|.-|||||                ..+||-|....+          -+...+.+.++.  +-   |.--|...
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~i----------ge~iR~~ll~~~~~~~~~~e~lLfaad   72 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPI----------GEKIRELLLNGEEKLSPKAEALLFAAD   72 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChH----------HHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            468999999999999                578998854111          112222222221  10   00001222


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEc---c------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCCH-
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDV---S------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMTE-  168 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv---~------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~se-  168 (225)
                      .+..-..-|...+++|++||.|-   +            ...+..++..   .+.| ++||+..|-...++++.+|... 
T Consensus        73 R~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~  152 (208)
T COG0125          73 RAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR  152 (208)
T ss_pred             HHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence            33334445666778899999884   1            1222223221   2356 7899998766777777766421 


Q ss_pred             ----HHHHHHHHHHHHHHHhhCCCCc--E-EEECC-CHHHHHHHHHHHHHhc
Q psy10228        169 ----EQAKKMYDRSMKMEQEFGEFFT--A-VVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       169 ----eei~~rl~~a~k~E~~~~~~fd--~-vI~Nd-dleea~~~lk~iI~~~  212 (225)
                          .+...-+++..+.-+++...+-  . +|.++ ++++..+.+..+|...
T Consensus       153 ~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~  204 (208)
T COG0125         153 DRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER  204 (208)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence                1111112222221223333333  3 34433 6999999888888754

>COG4639 Predicted kinase [General function prediction only]

Probab=96.27  E-value=0.048  Score=45.14  Aligned_cols=139  Identities=16%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCIL  129 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~il  129 (225)
                      ..++|+|+|||||+++-++---+       -+-+ +-+.|...+-...-.|-.+-+. .-.-......+..+++|++.|+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~~~-------~~~l-sld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii   74 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENFLQ-------NYVL-SLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTII   74 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhCCC-------ccee-cHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            36899999999999777663222       2334 7788887653222111111100 1223344556777889999999


Q ss_pred             EccH---HHHHHHH---h-hccCCeEEEEecCCHHHHHH--HhccC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHH
Q psy10228        130 DVSG---NAIKRLQ---V-ASLYPVAIFIKPKSVESIME--MNKRM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPE  199 (225)
Q Consensus       130 dv~~---~gvk~L~---~-~~~~Pi~IFI~pps~~~L~~--L~~R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nddle  199 (225)
                      |..-   .-.+.+.   + .+..+++|.+..|-..-+.+  ++.|- .++-|.+++....  ...-.+.|-++..+...+
T Consensus        75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r~~r~~~--~~l~~e~~~~~~~~~s~e  152 (168)
T COG4639          75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPRMLRETI--DLLEKEPFRYVWTLSSPE  152 (168)
T ss_pred             EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHHHHHHHH--hhccCCCeEEEEecCCHH
Confidence            9643   3333332   2 13445666666553232333  33333 3455554444422  223345666666666554

>PRK14526 adenylate kinase; Provisional

Probab=96.25  E-value=0.039  Score=47.23  Aligned_cols=45  Identities=13%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHHHHHHH----hhCCC-CcEEEE-CCCHHHHHHHHHHHHHh
Q psy10228        167 TEEQAKKMYDRSMKMEQ----EFGEF-FTAVVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       167 seeei~~rl~~a~k~E~----~~~~~-fd~vI~-Nddleea~~~lk~iI~~  211 (225)
                      +++.+++||....+.-.    .|... .-..|. +.++++.+++|..+|..
T Consensus       159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            36788999988753111    22221 123333 33799999999998864

>KOG3079|consensus

Probab=96.20  E-value=0.033  Score=47.13  Aligned_cols=144  Identities=15%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCe----
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH----  126 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~----  126 (225)
                      .+|.+.|.+||||.   |-+.|--|.-|  |-.+ |.-+..+...+..        |.-||-.   |++++++|++    
T Consensus         9 ~IifVlGGPGsgKg---TqC~kiv~ky~--ftHl-SaGdLLR~E~~~~--------gse~g~~---I~~~i~~G~iVP~e   71 (195)
T KOG3079|consen    9 PIIFVLGGPGSGKG---TQCEKIVEKYG--FTHL-SAGDLLRAEIASA--------GSERGAL---IKEIIKNGDLVPVE   71 (195)
T ss_pred             CEEEEEcCCCCCcc---hHHHHHHHHcC--ceee-cHHHHHHHHHccc--------cChHHHH---HHHHHHcCCcCcHH
Confidence            47789999999998   22222223333  3344 4444433332221        2233322   3333333433    


Q ss_pred             ------------------EEEEccHHHHHHHHh--hcc--CC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHH
Q psy10228        127 ------------------CILDVSGNAIKRLQV--ASL--YP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMY  175 (225)
Q Consensus       127 ------------------~ildv~~~gvk~L~~--~~~--~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl  175 (225)
                                        -|+|--|.-.+++..  +.+  -| .++|+.++--.-|+++..|+        +.+.+++|+
T Consensus        72 i~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~  151 (195)
T KOG3079|consen   72 ITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRL  151 (195)
T ss_pred             HHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence                              455554444444332  112  23 78999998755566666554        257889999


Q ss_pred             HHHHHHH---HhhCCCCcE--EEE-CCCHHHHHHHHHHHHHh
Q psy10228        176 DRSMKME---QEFGEFFTA--VVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       176 ~~a~k~E---~~~~~~fd~--vI~-Nddleea~~~lk~iI~~  211 (225)
                      +...+.-   ++|-+.-+.  .|. +.+.++.+.++..+|..
T Consensus       152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            8875321   122221112  232 34799999999988864

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=96.19  E-value=0.037  Score=46.80  Aligned_cols=69  Identities=13%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccC
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~  214 (225)
                      ...+|||.+|.-..++++..|  .+++++..|+.+-...+ ......|++|.|+ ++++.+.++..++.....
T Consensus       126 ~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~-~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        126 MDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDD-VRLKAADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCHH-HHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            457899999876667676554  37889988888653222 1235778999998 799999999998876644

>PRK13974 thymidylate kinase; Provisional

Probab=96.16  E-value=0.16  Score=43.09  Aligned_cols=95  Identities=24%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             HHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCCH---HHHHHH
Q psy10228        117 VRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMTE---EQAKKM  174 (225)
Q Consensus       117 V~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~se---eei~~r  174 (225)
                      |+..+++|+++|.|=-               .+-+..+..   ..+.| .+||+..|.-..++++..|..+   +....-
T Consensus        88 i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y  167 (212)
T PRK13974         88 IRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEF  167 (212)
T ss_pred             HHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchhhhhHHH
Confidence            5666778988886521               111333332   13356 7788888754444557666532   111111


Q ss_pred             HHHHHHHHHhhCCCCcE-EEECC-CHHHHHHHHHHHHHh
Q psy10228        175 YDRSMKMEQEFGEFFTA-VVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       175 l~~a~k~E~~~~~~fd~-vI~Nd-dleea~~~lk~iI~~  211 (225)
                      +.+....-..+....-. +|..+ ++++..+++..+|..
T Consensus       168 ~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~  206 (212)
T PRK13974        168 LERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN  206 (212)
T ss_pred             HHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            11221111223222223 34433 799999999999974

>PRK13976 thymidylate kinase; Provisional

Probab=96.16  E-value=0.039  Score=47.16  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             HHHHHHcCCeEEEEcc---------------HHHHHHHHh--hccCC-eEEEEecCCHHHHHHHhccCCH---HHHHHHH
Q psy10228        117 VRDVAEKGKHCILDVS---------------GNAIKRLQV--ASLYP-VAIFIKPKSVESIMEMNKRMTE---EQAKKMY  175 (225)
Q Consensus       117 V~~v~~~gk~~ildv~---------------~~gvk~L~~--~~~~P-i~IFI~pps~~~L~~L~~R~se---eei~~rl  175 (225)
                      |...+++|+++|.|=-               .+-+..|..  ....| ++||+..|--..+++++++.-+   .+..+++
T Consensus        79 I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v  158 (209)
T PRK13976         79 ILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKV  158 (209)
T ss_pred             HHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHH
Confidence            5556678999998731               111233332  12346 7889987643444445544322   2333444


Q ss_pred             HHHHH-HHHhhCCCCcEEEEC----CC---HHHHHHHHHHHHHhc
Q psy10228        176 DRSMK-MEQEFGEFFTAVVQG----DM---PEDIYQKVKEVIQEQ  212 (225)
Q Consensus       176 ~~a~k-~E~~~~~~fd~vI~N----dd---leea~~~lk~iI~~~  212 (225)
                      ..+.. +-..+.+.+ .+|.+    .+   +++..+++.++|...
T Consensus       159 ~~~Y~~l~~~~~~~~-~~id~~~~~~~~~~~e~v~~~i~~~i~~~  202 (209)
T PRK13976        159 RKGFREIVIKNPHRC-HVITCIDAKDNIEDINSVHLEIVKLLHAV  202 (209)
T ss_pred             HHHHHHHHHhCCCCe-EEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence            44421 111122222 23343    24   899999999988754

>KOG3354|consensus

Probab=96.14  E-value=0.031  Score=46.47  Aligned_cols=147  Identities=18%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             CccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHc
Q psy10228         50 QEPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEK  123 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~  123 (225)
                      +-.|+++|+|||||+      ++.-+-   .=.||-|||=-.+++.|.+-|.-++==-|    +++--+... .+..+..
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~---~F~dgDd~Hp~~NveKM~~GipLnD~DR~----pWL~~i~~~-~~~~l~~   83 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGL---KFIDGDDLHPPANVEKMTQGIPLNDDDRW----PWLKKIAVE-LRKALAS   83 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCC---cccccccCCCHHHHHHHhcCCCCCccccc----HHHHHHHHH-HHHHhhc
Confidence            458999999999999      333332   23688888865466666665543332111    122222222 2333447


Q ss_pred             CCeEEEEccHHHHHH----H-Hhh------ccCC----eEEEEecCCHHHHHH-HhccCC----HHHHHHHHHHHHHHHH
Q psy10228        124 GKHCILDVSGNAIKR----L-QVA------SLYP----VAIFIKPKSVESIME-MNKRMT----EEQAKKMYDRSMKMEQ  183 (225)
Q Consensus       124 gk~~ildv~~~gvk~----L-~~~------~~~P----i~IFI~pps~~~L~~-L~~R~s----eeei~~rl~~a~k~E~  183 (225)
                      |+-+||-++.  +++    + +.+      .-+|    .+||+.. |.++|.. +.+|-.    .+-++..++.   +|.
T Consensus        84 ~q~vVlACSa--LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf~~---LE~  157 (191)
T KOG3354|consen   84 GQGVVLACSA--LKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQFAT---LEA  157 (191)
T ss_pred             CCeEEEEhHH--HHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHHHh---ccC
Confidence            8888888764  221    1 110      1344    4677777 7787765 777753    2222222222   222


Q ss_pred             hhCC---CCcEEEECCCHHHHHHHHHHHHH
Q psy10228        184 EFGE---FFTAVVQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       184 ~~~~---~fd~vI~Nddleea~~~lk~iI~  210 (225)
                      .-.+   .+..-+.|-+.|+.++.|...+.
T Consensus       158 p~~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  158 PDADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             CCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence            1112   23333445688888888776653

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.10  E-value=0.0083  Score=54.45  Aligned_cols=67  Identities=18%  Similarity=0.262  Sum_probs=47.7

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      ..|+|+||+|||||                          ..-|-+|-..|..|+.||.+ +            +++.++
T Consensus         4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhli-D------------i~~p~e   70 (308)
T COG0324           4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLI-D------------IRDPTE   70 (308)
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEe-c------------ccCccc
Confidence            47999999999999                          33444455569999999987 2            333222


Q ss_pred             -eC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228        105 -YN-DNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       105 -~~-gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                       |+ +.++--....|.++..+||..|+.
T Consensus        71 ~ysa~~f~~~a~~~i~~i~~rgk~pIlV   98 (308)
T COG0324          71 SYSAAEFQRDALAAIDDILARGKLPILV   98 (308)
T ss_pred             cccHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence             22 244455778899999999988775

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.15  Score=42.70  Aligned_cols=148  Identities=11%  Similarity=0.217  Sum_probs=77.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce--eecHHHHHHHHHcCCeEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y--GTs~~sV~~v~~~gk~~i  128 (225)
                      ..|+|+|+-|+|||+.--+-.     .--+|.|+++.+.+++... -.--+.-...|.-|  -.=...|+++...+ .+|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LA-----k~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~V   75 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALA-----KALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEED-NAV   75 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHH-----HHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeE
Confidence            469999999999992211100     0126778866666665421 00000000111111  11223355556655 455


Q ss_pred             EEccH------HHHHHHHhhccCCeEEEEecCCHHHHHH-Hhc---cC-----CH-HHHHHHHHHHHHHHHhhCCCCcEE
Q psy10228        129 LDVSG------NAIKRLQVASLYPVAIFIKPKSVESIME-MNK---RM-----TE-EQAKKMYDRSMKMEQEFGEFFTAV  192 (225)
Q Consensus       129 ldv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~---R~-----se-eei~~rl~~a~k~E~~~~~~fd~v  192 (225)
                      +-..+      +....|+.   ..++||+..| ++.|.+ +..   |.     +. +.+++.++.=   ...|....|++
T Consensus        76 iaTGGG~v~~~enr~~l~~---~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R---~~~Y~e~a~~~  148 (172)
T COG0703          76 IATGGGAVLSEENRNLLKK---RGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLEER---QPLYREVADFI  148 (172)
T ss_pred             EECCCccccCHHHHHHHHh---CCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHHHH---HHHHHHhCcEE
Confidence            54333      33334432   3489999985 677765 652   21     12 2344433332   24566778888


Q ss_pred             EECCC-HHHHHHHHHHHHHhc
Q psy10228        193 VQGDM-PEDIYQKVKEVIQEQ  212 (225)
Q Consensus       193 I~Ndd-leea~~~lk~iI~~~  212 (225)
                      +..++ .++.++++...+...
T Consensus       149 ~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         149 IDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             ecCCCCcHHHHHHHHHHHHHh
Confidence            88664 378888888877653

>PRK12338 hypothetical protein; Provisional

Probab=96.05  E-value=0.033  Score=50.79  Aligned_cols=90  Identities=16%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             HHcCCeEEEE---ccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC------C-----HHHHHHHHHHHHHHHHhh
Q psy10228        121 AEKGKHCILD---VSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM------T-----EEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       121 ~~~gk~~ild---v~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~------s-----eeei~~rl~~a~k~E~~~  185 (225)
                      +..|..+|++   +.|.-+...+...-.++..|+.-++.+..+ ++..|.      .     -++|+.+.+..  .++  
T Consensus       102 ~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l--~~~--  177 (319)
T PRK12338        102 VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHL--VEQ--  177 (319)
T ss_pred             hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHH--HHh--
Confidence            4467788876   344333322221212333333335655554 355432      1     23444332222  122  


Q ss_pred             CCCCcEE-EECCCHHHHHHHHHHHHHhccC
Q psy10228        186 GEFFTAV-VQGDMPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       186 ~~~fd~v-I~Nddleea~~~lk~iI~~~~~  214 (225)
                      +..++.. |.|+|++++++++.++|...+.
T Consensus       178 A~e~~VpvI~N~did~Tv~~ile~I~e~s~  207 (319)
T PRK12338        178 AREHNVPVIKNDDIDCTVKKMLSYIREVCV  207 (319)
T ss_pred             HhhCCCceeCCCcHHHHHHHHHHHHHhheE
Confidence            3445554 6788999999999999987654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.04  E-value=0.0077  Score=50.46  Aligned_cols=26  Identities=4%  Similarity=0.164  Sum_probs=19.7

Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ...|.+|.++  ++++++.+|.+.|...
T Consensus       166 ~~ad~~Idt~~~~~~~vv~~Il~~l~~~  193 (198)
T PRK03846        166 ESPEIHLDTGEQLVTNLVEQLLDYLRQR  193 (198)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4467888754  6899999999888753

>PRK07933 thymidylate kinase; Validated

Probab=96.00  E-value=0.35  Score=41.26  Aligned_cols=13  Identities=0%  Similarity=-0.181  Sum_probs=12.4

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|+|-|+-|||||
T Consensus         2 ~IviEG~dGsGKS   14 (213)
T PRK07933          2 LIAIEGVDGAGKR   14 (213)
T ss_pred             EEEEEcCCCCCHH
Confidence            6999999999999

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.98  E-value=0.052  Score=42.16  Aligned_cols=33  Identities=12%  Similarity=0.023  Sum_probs=21.0

Q ss_pred             eEEEEecCCHHHHHHHhc-----c--CCHHHHHHHHHHHH
Q psy10228        147 VAIFIKPKSVESIMEMNK-----R--MTEEQAKKMYDRSM  179 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~-----R--~seeei~~rl~~a~  179 (225)
                      .+|||..|-...++++.+     +  .+++++.+++..-.
T Consensus        85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d  124 (147)
T cd02020          85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERD  124 (147)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            779998765444455433     2  37888877776654

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.94  E-value=0.0026  Score=52.45  Aligned_cols=144  Identities=9%  Similarity=0.108  Sum_probs=66.8

Q ss_pred             CccEEEEccCCCCCCC----cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-c---ceeecHHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTE----DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-N---LYGTSVASVRDVA  121 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s----~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n---~YGTs~~sV~~v~  121 (225)
                      ..+|+|+|+|||||++    ...+.+    ..|....++ +.+.+.+.+..+.     .|.. .   .|-.-....+..+
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~~l~----~~~~~~~~l-~~d~~r~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~   87 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEKKLE----SKGYRVYVL-DGDNVRHGLNKDL-----GFSEEDRKENIRRIGEVAKLFV   87 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEE-CChHHHhhhcccc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999981    111111    124444566 5555554332111     0100 0   0100012234466


Q ss_pred             HcCCeEEEEccH---HHHHHHHh-hccCC-eEEEEecCCHHHHHHHhcc-C----CHHHHHHHHHHHHHHHHhhC--CCC
Q psy10228        122 EKGKHCILDVSG---NAIKRLQV-ASLYP-VAIFIKPKSVESIMEMNKR-M----TEEQAKKMYDRSMKMEQEFG--EFF  189 (225)
Q Consensus       122 ~~gk~~ildv~~---~gvk~L~~-~~~~P-i~IFI~pps~~~L~~L~~R-~----seeei~~rl~~a~k~E~~~~--~~f  189 (225)
                      .+|.+||+|..-   .....++. ....| ++||+.+| .+.+.+-..+ +    +.+++....    .....|.  ...
T Consensus        88 ~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~l~----~~~~~y~~p~~a  162 (184)
T TIGR00455        88 RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQRDPKGLYKKARNGEIKGFT----GIDSPYEAPENP  162 (184)
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCchhHHHHHhcCCccCcc----cccCCCCCCCCC
Confidence            779999998642   11111211 11123 56888876 4444321111 0    000110000    0112232  457


Q ss_pred             cEEEECC--CHHHHHHHHHHH
Q psy10228        190 TAVVQGD--MPEDIYQKVKEV  208 (225)
Q Consensus       190 d~vI~Nd--dleea~~~lk~i  208 (225)
                      |++|.++  ++++++.++...
T Consensus       163 dl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       163 EVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             cEEEECCCCCHHHHHHHHHHh
Confidence            7888765  688888887653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=95.91  E-value=0.043  Score=45.98  Aligned_cols=154  Identities=14%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecH--------HHHHHHHH
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSV--------ASVRDVAE  122 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~--------~sV~~v~~  122 (225)
                      ..++++|-+|+|||+.+.=..+.  .  .+|+.| +--++.-.++....+  .+..+..-+.+.        .+.+.+.+
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~--l--~~~~iv-NyG~~Mle~A~k~gl--ve~rD~~Rklp~e~Q~~lq~~Aa~rI~~   77 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKE--L--VKHKIV-NYGDLMLEIAKKKGL--VEHRDEMRKLPLENQRELQAEAAKRIAE   77 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHH--H--hhceee-eHhHHHHHHHHHhCC--cccHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999655544332  2  567777 444444333322221  122333444443        34455556


Q ss_pred             cCCeEEEEc-----cHHH----HHHHHhhccCCeEEEEecCCHHHHHH--Hhc----cC--CHHHHHHHHHHHHHHHHhh
Q psy10228        123 KGKHCILDV-----SGNA----IKRLQVASLYPVAIFIKPKSVESIME--MNK----RM--TEEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       123 ~gk~~ildv-----~~~g----vk~L~~~~~~Pi~IFI~pps~~~L~~--L~~----R~--seeei~~rl~~a~k~E~~~  185 (225)
                      .+..+|+|.     +|.|    +..--...+.|-+|+|.--+.+++..  ++.    |.  +.++|++.++.+.-.-..|
T Consensus        78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~  157 (189)
T COG2019          78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAY  157 (189)
T ss_pred             hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence            666456664     2222    22101125677666666556666542  432    11  4577776555443222333


Q ss_pred             C---CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        186 G---EFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       186 ~---~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      +   +--=.||.|.  ++++|...+..+|..
T Consensus       158 A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         158 AILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             HHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            2   2333566776  799999999998864

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.91  E-value=0.015  Score=51.72  Aligned_cols=54  Identities=13%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             ccCCeEEEEecCCHHH----HHH-HhccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228        143 SLYPVAIFIKPKSVES----IME-MNKRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD  196 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~----L~~-L~~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd  196 (225)
                      .++...|||.++....    +++ +.+|+ +.+++.+++......+..|    ....|+||.++
T Consensus       114 ~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~  177 (273)
T cd02026         114 ELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVVIQVL  177 (273)
T ss_pred             hhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEEEEcc
Confidence            4567899999876444    223 44555 6788887776432222333    46788888654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=95.84  E-value=0.0037  Score=52.42  Aligned_cols=101  Identities=7%  Similarity=0.087  Sum_probs=47.4

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE--------EEEeCCc-ceeecHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE--------AGQYNDN-LYGTSVASVRDV  120 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE--------~~~~~gn-~YGTs~~sV~~v  120 (225)
                      ...++|.|++|||||+.-..-...  ..+.++..+ +.++|...+..  |-+        +..+... ..-.....++.+
T Consensus        15 P~~~i~aG~~GsGKSt~~~~~~~~--~~~~~~v~i-~~D~~r~~~p~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a   89 (199)
T PF06414_consen   15 PTLIIIAGQPGSGKSTLARQLLEE--FGGGGIVVI-DADEFRQFHPD--YDELLKADPDEASELTQKEASRLAEKLIEYA   89 (199)
T ss_dssp             -EEEEEES-TTSTTHHHHHHHHHH--T-TT-SEEE--GGGGGGGSTT--HHHHHHHHCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHhhhh--ccCCCeEEE-ehHHHHHhccc--hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999322222111  115677888 78887765411  000        0000000 001234456777


Q ss_pred             HHcCCeEEEEcc---HHHH----HHHHhhccCCeEEEEecCC
Q psy10228        121 AEKGKHCILDVS---GNAI----KRLQVASLYPVAIFIKPKS  155 (225)
Q Consensus       121 ~~~gk~~ildv~---~~gv----k~L~~~~~~Pi~IFI~pps  155 (225)
                      ++++.++|+|-.   +..+    +.++.+++...++||..|.
T Consensus        90 ~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~  131 (199)
T PF06414_consen   90 IENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP  131 (199)
T ss_dssp             HHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred             HHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence            889999999953   2333    3455556555666776553

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=95.80  E-value=0.028  Score=46.90  Aligned_cols=144  Identities=15%  Similarity=0.143  Sum_probs=75.5

Q ss_pred             ccEEEEccCCCCCCCc----ccCCCCCCCCCCcceEEecCHHHHHHhh-----hCCcEEEEE-------EeCCcceeecH
Q psy10228         51 EPFMLCYTQDDPTTED----TTRARREYEVDGRDYHFVSSREQMEKDI-----QNHLFIEAG-------QYNDNLYGTSV  114 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~----TTRp~R~~E~dG~dY~FV~s~eef~~~i-----~~~~FiE~~-------~~~gn~YGTs~  114 (225)
                      ++|+|-|||.|||||.    -.+-+       .-|+.+ +-+.|..++     ..+.-++|+       ......|-.-.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~-------~p~~~l-~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLP-------EPWLHL-SVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMH   73 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSS-------S-EEEE-EHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc-------CCeEEE-ecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHH
Confidence            6899999999999911    11122       234445 788888844     333445554       22234566677


Q ss_pred             HHHHHHHHcCCeEEEE-c--cHHH-HHHHHh-hccCC-eEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHH-h
Q psy10228        115 ASVRDVAEKGKHCILD-V--SGNA-IKRLQV-ASLYP-VAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQ-E  184 (225)
Q Consensus       115 ~sV~~v~~~gk~~ild-v--~~~g-vk~L~~-~~~~P-i~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~-~  184 (225)
                      .+|...++.|-.+|+| +  ++.. ...++. -.-+| ..|=|.+| .+++++ -+.|++  ..     +.+. +.+. .
T Consensus        74 ~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G-----~a~~-q~~~Vh  146 (174)
T PF07931_consen   74 AAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIG-----LAAW-QAEHVH  146 (174)
T ss_dssp             HHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTT-----HHHH-HTTGGG
T ss_pred             HHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchH-----HHHH-HHhhcc
Confidence            8888899999999998 2  3332 233322 12244 44555665 667665 444542  11     1111 1221 2


Q ss_pred             hCCCCcEEEECC--CHHHHHHHHHHHH
Q psy10228        185 FGEFFTAVVQGD--MPEDIYQKVKEVI  209 (225)
Q Consensus       185 ~~~~fd~vI~Nd--dleea~~~lk~iI  209 (225)
                      -...||..|...  +++++.++|.+.+
T Consensus       147 ~~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  147 EGGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             TT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence            234689988765  6888888887644

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK06217 hypothetical protein; Validated

Probab=95.78  E-value=0.06  Score=44.42  Aligned_cols=47  Identities=11%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             HHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc
Q psy10228        118 RDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR  165 (225)
Q Consensus       118 ~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R  165 (225)
                      .+.+..+...|+|-.+...... .....-.+|||.+|....+.++..|
T Consensus        58 ~~~~~~~~~~vi~G~~~~~~~~-~~~~~d~~i~Ld~~~~~~~~Rl~~R  104 (183)
T PRK06217         58 LEDLRPREGWVLSGSALGWGDP-LEPLFDLVVFLTIPPELRLERLRLR  104 (183)
T ss_pred             HHHHhcCCCEEEEccHHHHHHH-HHhhCCEEEEEECCHHHHHHHHHcC
Confidence            3344445667877554432111 1223447899998765555555544

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=95.77  E-value=0.022  Score=55.32  Aligned_cols=95  Identities=11%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             CCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeE
Q psy10228         48 SDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~  127 (225)
                      ...++||++|++|||||+..-+-...     ..|..| +.+.+..                 |-.-...+++.+++|+.+
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~-----~g~~~v-n~D~lg~-----------------~~~~~~~a~~~L~~G~sV  423 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQP-----AGYKHV-NADTLGS-----------------TQNCLTACERALDQGKRC  423 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH-----cCCeEE-CcHHHHH-----------------HHHHHHHHHHHHhCCCcE
Confidence            44679999999999999443332211     147778 7776531                 223456678899999999


Q ss_pred             EEEcc---H---HHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC
Q psy10228        128 ILDVS---G---NAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM  166 (225)
Q Consensus       128 ildv~---~---~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~  166 (225)
                      |+|-.   .   ..+..|-...-+| ..|++..| .+.+++ ++.|.
T Consensus       424 VIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~  469 (526)
T TIGR01663       424 AIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFRE  469 (526)
T ss_pred             EEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhc
Confidence            99842   2   2222222222245 45666665 566654 55553

Note that the EC number for the kinase function is: 2.7.1.78

>PLN02842 nucleotide kinase

Probab=95.71  E-value=0.16  Score=49.08  Aligned_cols=52  Identities=15%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             HhccC--CHHHHHHHHHHHHHHHHhhCCCCcE---EEEC-CCHHHHHHHHHHHHHhcc
Q psy10228        162 MNKRM--TEEQAKKMYDRSMKMEQEFGEFFTA---VVQG-DMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       162 L~~R~--seeei~~rl~~a~k~E~~~~~~fd~---vI~N-ddleea~~~lk~iI~~~~  213 (225)
                      |.+|.  +++.+++||....+.-.....+|..   .|.. .++++.+++|..+|.+..
T Consensus       147 L~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L  204 (505)
T PLN02842        147 LITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQ  204 (505)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            44444  3678999988775322222222222   2222 268999999988887543

>PRK14529 adenylate kinase; Provisional

Probab=95.61  E-value=0.17  Score=43.88  Aligned_cols=12  Identities=0%  Similarity=0.019  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|.||+||||+
T Consensus         3 I~l~G~PGsGK~   14 (223)
T PRK14529          3 ILIFGPNGSGKG   14 (223)
T ss_pred             EEEECCCCCCHH
Confidence            889999999999

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.51  E-value=0.046  Score=43.17  Aligned_cols=13  Identities=0%  Similarity=-0.056  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|+|+|++|||||
T Consensus         1 li~l~G~~GsGKS   13 (150)
T cd02021           1 IIVVMGVSGSGKS   13 (150)
T ss_pred             CEEEEcCCCCCHH
Confidence            4799999999998

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=95.47  E-value=0.031  Score=52.25  Aligned_cols=70  Identities=9%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             cCCeEEEEecCCHHHHHHHhc-cC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccC
Q psy10228        144 LYPVAIFIKPKSVESIMEMNK-RM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       144 ~~Pi~IFI~pps~~~L~~L~~-R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~  214 (225)
                      .+..+|||.+|.-..++++.. |+ +.+++..++..... ........|++|.|+ +++++..++..++.....
T Consensus       123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~Q~~-~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~  195 (395)
T PRK03333        123 LFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAAQAS-DEQRRAVADVWLDNSGTPDELVEAVRALWADRLL  195 (395)
T ss_pred             hCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCC-hHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            345889999987666666544 44 67777777765321 112235669999987 799999999988875543

>PTZ00301 uridine kinase; Provisional

Probab=95.47  E-value=0.081  Score=45.30  Aligned_cols=69  Identities=13%  Similarity=0.077  Sum_probs=38.2

Q ss_pred             ccCCeEEEEecCCHHHHHH-----HhccC-CHHHHHHHHHH-HHHHHHh----hCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        143 SLYPVAIFIKPKSVESIME-----MNKRM-TEEQAKKMYDR-SMKMEQE----FGEFFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~-----L~~R~-seeei~~rl~~-a~k~E~~----~~~~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      .++-+.|||.+|.-..+.+     +..|+ +.+++.++... .......    .....|.||.+. +.+.++..|...|.
T Consensus       125 ~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~  204 (210)
T PTZ00301        125 NEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN  204 (210)
T ss_pred             HhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence            4566889999876333333     22344 45555443333 2222222    246788988755 56667766655554


Q ss_pred             h
Q psy10228        211 E  211 (225)
Q Consensus       211 ~  211 (225)
                      .
T Consensus       205 ~  205 (210)
T PTZ00301        205 H  205 (210)
T ss_pred             H
Confidence            3

>PRK08118 topology modulation protein; Reviewed

Probab=95.46  E-value=0.067  Score=43.88  Aligned_cols=13  Identities=8%  Similarity=0.077  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|+|+||+|||||
T Consensus         3 rI~I~G~~GsGKS   15 (167)
T PRK08118          3 KIILIGSGGSGKS   15 (167)
T ss_pred             EEEEECCCCCCHH
Confidence            3899999999999

>KOG3220|consensus

Probab=95.46  E-value=0.13  Score=44.40  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHH
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPED  200 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dlee  200 (225)
                      .+.|++|+-.- ... ....+.-.+|-+.++.-.++++|-.|.  |+++++.|++.-+-+|... ...|+||.|+ ++++
T Consensus       107 ~r~ivlDiPLL-FE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~sQmp~~~k~-~~a~~Vi~Nng~~~~  183 (225)
T KOG3220|consen  107 YRVIVLDIPLL-FEA-KLLKICHKTVVVTCDEELQLERLVERDELSEEDAENRLQSQMPLEKKC-ELADVVIDNNGSLED  183 (225)
T ss_pred             CeEEEEechHH-HHH-hHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHHHHhcCCHHHHH-HhhheeecCCCChHH
Confidence            56788897541 111 111233355666667778888866665  7889988887654334333 4668899876 7999


Q ss_pred             HHHHHHHHHHhccCCcee
Q psy10228        201 IYQKVKEVIQEQSGPSIW  218 (225)
Q Consensus       201 a~~~lk~iI~~~~~~~~W  218 (225)
                      +++++..++...+..-.|
T Consensus       184 l~~qv~~v~~~~~~s~~~  201 (225)
T KOG3220|consen  184 LYEQVEKVLALLQKSIPK  201 (225)
T ss_pred             HHHHHHHHHHHhcchhHH
Confidence            999999998888776444

>PRK07667 uridine kinase; Provisional

Probab=95.42  E-value=0.046  Score=45.72  Aligned_cols=82  Identities=10%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             hhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHH
Q psy10228         93 DIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQ  170 (225)
Q Consensus        93 ~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seee  170 (225)
                      .+..+.-+.+-.|+-.. +....... .+..+.++|+|.-.  +-......++..+|||.+|.-..++++.+|.  +.++
T Consensus        91 ~L~~~~~i~~P~~d~~~-~~~~~~~~-~~~~~~vvIvEG~~--l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~~~~~~  166 (193)
T PRK07667         91 KLQNETKLTLPFYHDET-DTCEMKKV-QIPIVGVIVIEGVF--LQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSK  166 (193)
T ss_pred             hhcCCCeEEEeeecccc-ccccccce-ecCCCCEEEEEehh--hhhhhHHhhceEEEEEECCHHHHHHHHhcccHhHHHH
Confidence            34555666666654321 11111000 12335666766543  2112223456789999998766666666665  3456


Q ss_pred             HHHHHHHH
Q psy10228        171 AKKMYDRS  178 (225)
Q Consensus       171 i~~rl~~a  178 (225)
                      ...|...|
T Consensus       167 ~~~r~~~a  174 (193)
T PRK07667        167 FKNRYWKA  174 (193)
T ss_pred             HHHHhHHH
Confidence            66666544

>PRK07261 topology modulation protein; Provisional

Probab=95.30  E-value=0.068  Score=43.92  Aligned_cols=48  Identities=13%  Similarity=0.056  Sum_probs=25.0

Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      -...+.+++.++. .|+|-.......-......-.+||+.+|-...+.+
T Consensus        48 ~~~~~~~~~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R   95 (171)
T PRK07261         48 MIADISNFLLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYR   95 (171)
T ss_pred             HHHHHHHHHhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence            3445566676666 67665543321111112233678888876444444

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.26  E-value=0.27  Score=47.71  Aligned_cols=28  Identities=14%  Similarity=0.398  Sum_probs=22.8

Q ss_pred             EEEECC--CHHHHHHHHHHHHHhccCCcee
Q psy10228        191 AVVQGD--MPEDIYQKVKEVIQEQSGPSIW  218 (225)
Q Consensus       191 ~vI~Nd--dleea~~~lk~iI~~~~~~~~W  218 (225)
                      ++|.++  ++++.++.|.+.|...-.+.+|
T Consensus       481 i~IDTs~lsieeVv~~Il~~i~~~~~~~~~  510 (512)
T PRK13477        481 IELITDGLSIEEVVDKIIDLYRDRIPEEVW  510 (512)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHhCccccC
Confidence            445444  6999999999999987888888

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=95.16  E-value=0.31  Score=47.45  Aligned_cols=150  Identities=15%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC--Cc-EEEEEEeCCcceeecHHHHHHHHHcCCe
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN--HL-FIEAGQYNDNLYGTSVASVRDVAEKGKH  126 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~--~~-FiE~~~~~gn~YGTs~~sV~~v~~~gk~  126 (225)
                      ...|+|+|..|||||+.--+-.   +.  -.|-|+++.+.+++....  .+ |-++|+-  ++.-.=.+.+++++.. ..
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA---~~--L~~~fiD~D~~ie~~~g~si~eif~~~Ge~--~FR~~E~~~l~~~~~~-~~   77 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVA---QM--MRLPFADADVEIEREIGMSIPSYFEEYGEP--AFREVEADVVADMLED-FD   77 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHH---HH--hCCCEEEchHHHHHHHCcCHHHHHHHHHHH--HHHHHHHHHHHHHHhc-CC
Confidence            3579999999999992211110   00  123466444455543210  00 1111110  1111122334444433 34


Q ss_pred             EEEEcc------HHHHHHHHh-hccCCeEEEEecCCHHHHH-HHhc---cC-----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228        127 CILDVS------GNAIKRLQV-ASLYPVAIFIKPKSVESIM-EMNK---RM-----TEEQAKKMYDRSMKMEQEFGEFFT  190 (225)
Q Consensus       127 ~ildv~------~~gvk~L~~-~~~~Pi~IFI~pps~~~L~-~L~~---R~-----seeei~~rl~~a~k~E~~~~~~fd  190 (225)
                      ||+.+.      ++..+.|+. ......+|||..+ .+.+. ++..   |.     +.+.+.+.+++-   +..|....|
T Consensus        78 ~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R---~~~Y~~~Ad  153 (542)
T PRK14021         78 GIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFKQR---DPVFRQVAN  153 (542)
T ss_pred             eEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHH---HHHHHhhCC
Confidence            566543      333444421 1123478999986 45554 3532   21     123444444331   345667889


Q ss_pred             EEEECC--CHHHHHHHHHHHHHh
Q psy10228        191 AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       191 ~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ++|.++  ++++++.++.+.+..
T Consensus       154 ~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        154 VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHh
Confidence            998865  689999999998864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=95.12  E-value=0.012  Score=58.08  Aligned_cols=151  Identities=11%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc----ceeecHHHHHHHHHcCC
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN----LYGTSVASVRDVAEKGK  125 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn----~YGTs~~sV~~v~~~gk  125 (225)
                      ..+|+++|.+|||||+..-+-.+.-...|..+.|+ +.+.+.+.+..+.     .|...    .|-.........+++|.
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l-~~D~~r~~l~~~~-----~~~~~~r~~~~~~l~~~a~~~~~~G~  533 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLL-DGDNVRHGLNRDL-----GFSDADRVENIRRVAEVARLMADAGL  533 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEE-cChhhhhccCCCC-----CCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            56899999999999932221111111246788899 7888887554221     01100    11111112233456798


Q ss_pred             eEEEEcc---HHHHHHHHh-hccCC-eEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhC--CCCcEEE
Q psy10228        126 HCILDVS---GNAIKRLQV-ASLYP-VAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFG--EFFTAVV  193 (225)
Q Consensus       126 ~~ildv~---~~gvk~L~~-~~~~P-i~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~--~~fd~vI  193 (225)
                      .+++|..   ..-...++. ..-.+ .+||+.+| .+.+.+-..|.     ..+++.    ........|.  ...+++|
T Consensus       534 ~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~~r~L~~~~~~~~l~----~l~~~r~~y~~P~~a~~~I  608 (632)
T PRK05506        534 IVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARDPKGLYAKARAGEIK----NFTGIDSPYEAPENPELRL  608 (632)
T ss_pred             EEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhCCcchhhhccccccc----cccccccCCCCCCCCeEEE
Confidence            8888853   111111221 11124 67888876 45544311121     011111    1101112233  3456777


Q ss_pred             ECC--CHHHHHHHHHHHHHh
Q psy10228        194 QGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       194 ~Nd--dleea~~~lk~iI~~  211 (225)
                      .++  +++++++++.+.+..
T Consensus       609 d~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        609 DTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             eCCCCCHHHHHHHHHHHHHH
Confidence            764  689999999888865

>PRK09087 hypothetical protein; Validated

Probab=95.06  E-value=0.081  Score=45.64  Aligned_cols=104  Identities=9%  Similarity=0.065  Sum_probs=52.2

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhh----hCCcEEEEEEeCCc--ceeecHHHHHHHHHcC
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDI----QNHLFIEAGQYNDN--LYGTSVASVRDVAEKG  124 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~~~FiE~~~~~gn--~YGTs~~sV~~v~~~g  124 (225)
                      .+++|.||+||||| |-.+.--. + -+  ..|+ +.+.|...+    ..+.++ --..+..  -...-..-+..+.+.|
T Consensus        45 ~~l~l~G~~GsGKT-hLl~~~~~-~-~~--~~~i-~~~~~~~~~~~~~~~~~l~-iDDi~~~~~~~~~lf~l~n~~~~~g  117 (226)
T PRK09087         45 PVVVLAGPVGSGKT-HLASIWRE-K-SD--ALLI-HPNEIGSDAANAAAEGPVL-IEDIDAGGFDETGLFHLINSVRQAG  117 (226)
T ss_pred             CeEEEECCCCCCHH-HHHHHHHH-h-cC--CEEe-cHHHcchHHHHhhhcCeEE-EECCCCCCCCHHHHHHHHHHHHhCC
Confidence            46999999999999 11110000 0 01  1256 454433322    222222 1111110  0111233445556778


Q ss_pred             CeEEEEcc--HHH----HHHHHhhccCCeEEEEecCCHHHHHH
Q psy10228        125 KHCILDVS--GNA----IKRLQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       125 k~~ildv~--~~g----vk~L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      +..|+-.+  +..    ...|+.+--...++-|.||+.+.+.+
T Consensus       118 ~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~  160 (226)
T PRK09087        118 TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ  160 (226)
T ss_pred             CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence            88777553  221    23455443456789999999877766

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.03  E-value=0.01  Score=49.51  Aligned_cols=99  Identities=18%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             HhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHH---hhccCCeEEEEecCCHHHHHH-----Hh
Q psy10228         92 KDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQ---VASLYPVAIFIKPKSVESIME-----MN  163 (225)
Q Consensus        92 ~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~---~~~~~Pi~IFI~pps~~~L~~-----L~  163 (225)
                      ..+.+|.-++.-.|.-..+.....  ..+.....++|++  +  +-.|.   .+.+.-+.|||.++.--.+.+     ..
T Consensus        77 ~~L~~g~~i~~p~yd~~~~~~~~~--~~~~~~~~ivIvE--G--~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~  150 (194)
T PF00485_consen   77 KALKNGGSIEIPIYDFSTGDRDPW--IIIISPSDIVIVE--G--IYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVA  150 (194)
T ss_dssp             HHHHTTSCEEEEEEETTTTEEEEE--EEEEES-SEEEEE--E--TTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccccccccccccceee--eeecCCCCEEEEc--c--cceeeeeeecccceeEEEecccHHHHHHHHhhhhcc
Confidence            345667777776664222111100  0112234555555  2  11121   135667899999865333443     33


Q ss_pred             ccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228        164 KRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD  196 (225)
Q Consensus       164 ~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd  196 (225)
                      .|+ +.+++.+++......+..|    ....|.||.+-
T Consensus       151 ~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~  188 (194)
T PF00485_consen  151 ERGRSPEEVIAQYERVRPGYERYIEPQKERADIVIPSG  188 (194)
T ss_dssp             HS-S-HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESC
T ss_pred             ccCCcceeEEEEeecCChhhhhheeccccccEEEECCC
Confidence            455 5677776766554444444    35789988764

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=94.87  E-value=0.014  Score=46.90  Aligned_cols=104  Identities=9%  Similarity=0.051  Sum_probs=47.0

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      .++|+|++|||||+....--+.-+..|..+.++ +.+.+.+.+..+..  |..-. ...|-......+..+++|.++|+|
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i-~~d~~r~~l~~~~~--~~~~~~~~~~~~~~~~a~~l~~~G~~VIid   77 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVL-DGDNVRHGLNKDLG--FSREDREENIRRIAEVAKLLADAGLIVIAA   77 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE-cCHHHHHhhhhccC--CCcchHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            478999999999822111111111224455555 55556554332210  00000 001111111223345679999998


Q ss_pred             ccHH--H-HHHHHh-hccCC-eEEEEecCCHHHH
Q psy10228        131 VSGN--A-IKRLQV-ASLYP-VAIFIKPKSVESI  159 (225)
Q Consensus       131 v~~~--g-vk~L~~-~~~~P-i~IFI~pps~~~L  159 (225)
                      ..-.  . ...++. ..-.+ ..||+.+| .+++
T Consensus        78 ~~~~~~~~R~~~~~l~~~~~~~~i~l~~~-~e~~  110 (149)
T cd02027          78 FISPYREDREAARKIIGGGDFLEVFVDTP-LEVC  110 (149)
T ss_pred             cCCCCHHHHHHHHHhcCCCCEEEEEEeCC-HHHH
Confidence            5421  1 111111 11133 57889887 4544

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK06547 hypothetical protein; Provisional

Probab=94.85  E-value=0.33  Score=40.11  Aligned_cols=16  Identities=6%  Similarity=-0.068  Sum_probs=13.6

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      ....|+|+|+||||||
T Consensus        14 ~~~~i~i~G~~GsGKT   29 (172)
T PRK06547         14 GMITVLIDGRSGSGKT   29 (172)
T ss_pred             CCEEEEEECCCCCCHH
Confidence            3457888999999999

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=94.83  E-value=0.064  Score=45.75  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=16.1

Q ss_pred             CC-eEEEEecCCHHHHHHHhccCC
Q psy10228        145 YP-VAIFIKPKSVESIMEMNKRMT  167 (225)
Q Consensus       145 ~P-i~IFI~pps~~~L~~L~~R~s  167 (225)
                      .| .+|||.+|....++++.+|+.
T Consensus       142 ~Pd~~i~l~~~~~~~~~Ri~~R~~  165 (219)
T cd02030         142 PPHLVIYLDVPVPEVQKRIKKRGD  165 (219)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCC
Confidence            35 789999876455555877774

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK07429 phosphoribulokinase; Provisional

Probab=94.82  E-value=0.064  Score=49.03  Aligned_cols=54  Identities=22%  Similarity=0.251  Sum_probs=33.5

Q ss_pred             ccCCeEEEEecCCHHHHH----H-HhccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228        143 SLYPVAIFIKPKSVESIM----E-MNKRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD  196 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~----~-L~~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd  196 (225)
                      .++...|||.++.-..+.    + +..|+ +.+++.+++++....+..|    ....|+||.+-
T Consensus       123 ~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~  186 (327)
T PRK07429        123 ELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFL  186 (327)
T ss_pred             hhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcC
Confidence            466789999987543332    2 44454 6778877776543222332    46788988864

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.70  E-value=0.37  Score=39.32  Aligned_cols=12  Identities=8%  Similarity=0.008  Sum_probs=11.6

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+||+||||+
T Consensus         2 I~i~G~pGsGKs   13 (194)
T cd01428           2 ILLLGPPGSGKG   13 (194)
T ss_pred             EEEECCCCCCHH
Confidence            799999999999

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=94.70  E-value=0.77  Score=39.50  Aligned_cols=67  Identities=12%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             CCeEEEEecCCHHHHHH-Hh---ccC---CHHHHHHHHHHHHHHHHhh-----CCCCcEEEECC---CHHHHHHHHHHHH
Q psy10228        145 YPVAIFIKPKSVESIME-MN---KRM---TEEQAKKMYDRSMKMEQEF-----GEFFTAVVQGD---MPEDIYQKVKEVI  209 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~-L~---~R~---seeei~~rl~~a~k~E~~~-----~~~fd~vI~Nd---dleea~~~lk~iI  209 (225)
                      ..+.|||.+|.....++ ++   .++   +.+++.+.+..-.+.+..+     ...-|++++|.   +++++++.|.++|
T Consensus       140 a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i  219 (225)
T PRK00023        140 AELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALV  219 (225)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHH
Confidence            45789999876433232 22   222   4555555444433323321     12345555544   6899999999998


Q ss_pred             Hh
Q psy10228        210 QE  211 (225)
Q Consensus       210 ~~  211 (225)
                      ..
T Consensus       220 ~~  221 (225)
T PRK00023        220 EE  221 (225)
T ss_pred             HH
Confidence            64

>PRK00625 shikimate kinase; Provisional

Probab=94.63  E-value=0.5  Score=39.13  Aligned_cols=13  Identities=23%  Similarity=0.271  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+|++|||||
T Consensus         2 ~I~LiG~pGsGKT   14 (173)
T PRK00625          2 QIFLCGLPTVGKT   14 (173)
T ss_pred             EEEEECCCCCCHH
Confidence            4899999999999

>PLN02459 probable adenylate kinase

Probab=94.60  E-value=0.23  Score=44.11  Aligned_cols=46  Identities=9%  Similarity=0.002  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHH----hhCCC-CcEEEE-CCCHHHHHHHHHHHHHhcc
Q psy10228        168 EEQAKKMYDRSMKMEQ----EFGEF-FTAVVQ-GDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       168 eeei~~rl~~a~k~E~----~~~~~-fd~vI~-Nddleea~~~lk~iI~~~~  213 (225)
                      ++.+++||+...+.-.    .|... .-+.|. +.++++.+.+|..+|....
T Consensus       202 ~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~  253 (261)
T PLN02459        202 EEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD  253 (261)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence            6778899988753211    12211 122333 3479999999999987543

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=94.50  E-value=0.035  Score=54.32  Aligned_cols=155  Identities=11%  Similarity=0.104  Sum_probs=74.7

Q ss_pred             CccEEEEccCCCCCCCcccCCC-CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRAR-REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~-R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~  127 (225)
                      ...|+|+|++|||||+.-..-. +-++..|.+..|+ +-+.+.+.+..+.  .|..-. ...|..-...-..+++.|..+
T Consensus       392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l-D~D~vr~~l~ge~--~f~~~er~~~~~~l~~~a~~v~~~Gg~v  468 (568)
T PRK05537        392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL-DGDVVRKHLSSEL--GFSKEDRDLNILRIGFVASEITKNGGIA  468 (568)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe-CCcHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            3478999999999992211111 1222345666777 4555543322110  000000 001110001123467789999


Q ss_pred             EEEc-cH-----HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHHHHHHhhC--CCCcEEEE
Q psy10228        128 ILDV-SG-----NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSMKMEQEFG--EFFTAVVQ  194 (225)
Q Consensus       128 ildv-~~-----~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~k~E~~~~--~~fd~vI~  194 (225)
                      |++. .+     ...+.+-...-..++||+..| .+++.+ .++.+    ..++++..+..    ...|-  ...|.+|.
T Consensus       469 I~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~~~----R~~yy~p~~Adl~ID  543 (568)
T PRK05537        469 ICAPIAPYRATRREVREMIEAYGGFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFTGI----SDPYEPPANPELVID  543 (568)
T ss_pred             EEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCC-HHHHHHhccccccccchhchhhccccc----cccccCCCCCcEEEE
Confidence            9883 22     112222111111257899876 566543 32221    11222222111    11122  34678887


Q ss_pred             CC--CHHHHHHHHHHHHHhc
Q psy10228        195 GD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       195 Nd--dleea~~~lk~iI~~~  212 (225)
                      ++  ++++++++|...|...
T Consensus       544 t~~~s~~eiv~~Il~~L~~~  563 (568)
T PRK05537        544 TTNVTPDECAHKILLYLEEK  563 (568)
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            65  6899999999888753

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=94.49  E-value=0.71  Score=44.37  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             HHHHHHcCCeEEEE---ccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--C------H------HHHHHHHHHH
Q psy10228        117 VRDVAEKGKHCILD---VSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--T------E------EQAKKMYDRS  178 (225)
Q Consensus       117 V~~v~~~gk~~ild---v~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--s------e------eei~~rl~~a  178 (225)
                      |+..+..|..+|+|   +.|.-+......+-.-+.++|..++.+..++ +..|.  +      +      ++|+.+.+..
T Consensus       352 I~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyL  431 (475)
T PRK12337        352 QERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQDHL  431 (475)
T ss_pred             HHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHH
Confidence            34566779999987   3454443222122122445777778777664 44332  1      1      2232221111


Q ss_pred             HHHHHhhCCCCcE-EEECCCHHHHHHHHHHHHHh
Q psy10228        179 MKMEQEFGEFFTA-VVQGDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       179 ~k~E~~~~~~fd~-vI~Nddleea~~~lk~iI~~  211 (225)
                        ++.  +..++. +|.|.|++++++.+.+.|-+
T Consensus       432 --v~~--A~~~~ipvI~n~nid~tv~~~l~~i~~  461 (475)
T PRK12337        432 --LRL--ARQEGVPVLPGEDLDESIDKALEVVLR  461 (475)
T ss_pred             --HHH--HHHcCCCeecCccHHHHHHHHHHHHHH
Confidence              111  223333 56788999999998887754

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.39  E-value=0.0087  Score=54.08  Aligned_cols=71  Identities=14%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             CccEEEEccCCCCCC------------------------CcccCCCCCCCCC-C-----------cceEEecCHHHHHHh
Q psy10228         50 QEPFMLCYTQDDPTT------------------------EDTTRARREYEVD-G-----------RDYHFVSSREQMEKD   93 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------------s~TTRp~R~~E~d-G-----------~dY~FV~s~eef~~~   93 (225)
                      .+..||+|+||+|||                        .||||.-+....+ |           -+++.+ ++++....
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~-~~e~l~~~  242 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHL-EPEDLVQA  242 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccC-CHHHHHHH
Confidence            458899999999998                        8999998877764 2           244445 66654432


Q ss_pred             hhCCcEEEEEEeCC-------cceeecHHHHHHHHHcCCe
Q psy10228         94 IQNHLFIEAGQYND-------NLYGTSVASVRDVAEKGKH  126 (225)
Q Consensus        94 i~~~~FiE~~~~~g-------n~YGTs~~sV~~v~~~gk~  126 (225)
                           |.|+..+.+       ..=+=+-.+|+++++.|.+
T Consensus       243 -----F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i  277 (301)
T COG1162         243 -----FPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEI  277 (301)
T ss_pred             -----hHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCC
Confidence                 443333322       2234477889999999875

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=94.35  E-value=0.6  Score=38.59  Aligned_cols=15  Identities=13%  Similarity=0.235  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ++.++|+||||||||
T Consensus         3 ge~i~l~G~sGsGKS   17 (176)
T PRK09825          3 GESYILMGVSGSGKS   17 (176)
T ss_pred             CcEEEEECCCCCCHH
Confidence            357899999999999

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=94.31  E-value=0.15  Score=40.54  Aligned_cols=55  Identities=22%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             CCeEEEEccHHHH---HHHHh----hccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH
Q psy10228        124 GKHCILDVSGNAI---KRLQV----ASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM  179 (225)
Q Consensus       124 gk~~ildv~~~gv---k~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~  179 (225)
                      .+..|||--|...   +.|..    ....| .+|++..|....++++.. .+++.+++|++...
T Consensus        74 ~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-d~~~~i~~Rl~~y~  136 (151)
T PF00406_consen   74 NRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-DNEEVIKKRLEEYR  136 (151)
T ss_dssp             TTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-GSHHHHHHHHHHHH
T ss_pred             cceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-CCHHHHHHHHHHHH
Confidence            5678888655433   33333    23445 778888876443334444 56788888888774

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=94.19  E-value=0.15  Score=42.02  Aligned_cols=13  Identities=0%  Similarity=-0.151  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|+|.|+.|||||
T Consensus         1 ~I~ieG~~GsGKS   13 (193)
T cd01673           1 VIVVEGNIGAGKS   13 (193)
T ss_pred             CEEEECCCCCCHH
Confidence            4899999999999

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=93.99  E-value=0.11  Score=51.36  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=38.5

Q ss_pred             hccCCeEEEEecC-CHHHHHHHh----ccC-CHHHHHHHHHHH-HHHHHhh----CCCCcEEEEC--------CC-----
Q psy10228        142 ASLYPVAIFIKPK-SVESIMEMN----KRM-TEEQAKKMYDRS-MKMEQEF----GEFFTAVVQG--------DM-----  197 (225)
Q Consensus       142 ~~~~Pi~IFI~pp-s~~~L~~L~----~R~-seeei~~rl~~a-~k~E~~~----~~~fd~vI~N--------dd-----  197 (225)
                      +.++.+.|||..| +++.++++.    .|+ +.+++..++... .-+-..|    ..+.|.+|.|        ++     
T Consensus       174 r~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Il  253 (656)
T PLN02318        174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYIL  253 (656)
T ss_pred             HhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEe
Confidence            3566799999965 455444443    344 445544343332 2122233    2457888877        11     


Q ss_pred             ---HHHHHHHHHHHHHhc
Q psy10228        198 ---PEDIYQKVKEVIQEQ  212 (225)
Q Consensus       198 ---leea~~~lk~iI~~~  212 (225)
                         .+-.++.++..+.+.
T Consensus       254 k~~~~~~~~~i~~~L~~~  271 (656)
T PLN02318        254 KSSRSVTVEQIKAVLSED  271 (656)
T ss_pred             cCCccccHHHHHHHhhhc
Confidence               255667777777654

>KOG1969|consensus

Probab=93.92  E-value=0.05  Score=54.52  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CccEEEEccCCCCCC---------------------------------------Ccc---cCCC--CCCCCCCcceEEec
Q psy10228         50 QEPFMLCYTQDDPTT---------------------------------------EDT---TRAR--REYEVDGRDYHFVS   85 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~---------------------------------------s~T---TRp~--R~~E~dG~dY~FV~   85 (225)
                      +++.+|+||+|.|||                                       +.+   +||.  =-+|+||-.--|| 
T Consensus       326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V-  404 (877)
T KOG1969|consen  326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV-  404 (877)
T ss_pred             cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHH-
Confidence            678999999999998                                       444   5554  3378888663344 


Q ss_pred             CHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEE-EccHHHHHHHHhhccCCeEEEEecCCHHHHH
Q psy10228         86 SREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCIL-DVSGNAIKRLQVASLYPVAIFIKPKSVESIM  160 (225)
Q Consensus        86 s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~il-dv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~  160 (225)
                        +.+..++.+..=.++|.-+++- |-.+..=-..+-.--+||. |+-..+++.|+   -+.-+|++.||+...|-
T Consensus       405 --dvilslv~a~~k~~~Gkq~~~~-~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr---~~A~ii~f~~p~~s~Lv  474 (877)
T KOG1969|consen  405 --DVILSLVKATNKQATGKQAKKD-KKRKKKRSKLLTRPIICICNDLYAPALRPLR---PFAEIIAFVPPSQSRLV  474 (877)
T ss_pred             --HHHHHHHHhhcchhhcCcccch-hhhhhhccccccCCEEEEecCccchhhhhcc---cceEEEEecCCChhHHH
Confidence              5677777655554554444332 2111110011111225664 34445555553   34556777788766654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=93.92  E-value=0.021  Score=47.14  Aligned_cols=14  Identities=7%  Similarity=-0.092  Sum_probs=13.3

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      +.++|+|+||+|||
T Consensus        36 k~~vl~G~SGvGKS   49 (161)
T PF03193_consen   36 KTSVLLGQSGVGKS   49 (161)
T ss_dssp             SEEEEECSTTSSHH
T ss_pred             CEEEEECCCCCCHH
Confidence            68999999999999

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=93.90  E-value=1.3  Score=39.81  Aligned_cols=72  Identities=13%  Similarity=0.201  Sum_probs=37.9

Q ss_pred             HHHHHhhccCCeEEEEecCCHHHHHH--HhccC---C-----HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHH
Q psy10228        136 IKRLQVASLYPVAIFIKPKSVESIME--MNKRM---T-----EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQ  203 (225)
Q Consensus       136 vk~L~~~~~~Pi~IFI~pps~~~L~~--L~~R~---s-----eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~  203 (225)
                      +..|+..+....+||+.+.+-.-+++  .-+|.   .     .+.|+  .++  ++-.......|.||...  +..+.-.
T Consensus        73 ~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~--~Er--~~L~~lr~~Ad~vIDTs~l~~~~Lr~  148 (284)
T PF03668_consen   73 LDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIE--KER--ELLEPLRERADLVIDTSNLSVHQLRE  148 (284)
T ss_pred             HHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHH--HHH--HHHHHHHHhCCEEEECCCCCHHHHHH
Confidence            34445456667899999976333333  22232   1     12221  111  11112346789999865  4666666


Q ss_pred             HHHHHHHh
Q psy10228        204 KVKEVIQE  211 (225)
Q Consensus       204 ~lk~iI~~  211 (225)
                      .|.+.+..
T Consensus       149 ~i~~~~~~  156 (284)
T PF03668_consen  149 RIRERFGG  156 (284)
T ss_pred             HHHHHhcc
Confidence            66666553

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=93.89  E-value=0.047  Score=46.17  Aligned_cols=44  Identities=9%  Similarity=0.071  Sum_probs=30.3

Q ss_pred             CccEEEEccCCCCCC-----CcccCCCCCCCC--CCcceEEecCHHHHHHhh
Q psy10228         50 QEPFMLCYTQDDPTT-----EDTTRARREYEV--DGRDYHFVSSREQMEKDI   94 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----s~TTRp~R~~E~--dG~dY~FV~s~eef~~~i   94 (225)
                      ++.|.|+|||||||+     -+.-=+|-.|++  .|++|.=. +.+.|.+.+
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~-~pea~Rq~V   79 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL-KPEAYRQQV   79 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc-ChHHHHHHH
Confidence            568999999999999     222223334443  57777777 788887765

>PRK06620 hypothetical protein; Validated

Probab=93.76  E-value=0.5  Score=40.39  Aligned_cols=14  Identities=7%  Similarity=-0.014  Sum_probs=13.0

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .+++|.||+|+|||
T Consensus        45 ~~l~l~Gp~G~GKT   58 (214)
T PRK06620         45 FTLLIKGPSSSGKT   58 (214)
T ss_pred             ceEEEECCCCCCHH
Confidence            56999999999999

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.71  E-value=0.049  Score=47.39  Aligned_cols=40  Identities=13%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             CCCccEEEEccCCCCCC------CcccCCCCCCC--CCCcceEEecCHHH
Q psy10228         48 SDQEPFMLCYTQDDPTT------EDTTRARREYE--VDGRDYHFVSSREQ   89 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~------s~TTRp~R~~E--~dG~dY~FV~s~ee   89 (225)
                      ..++++.|+||||||||      ..--+| -.|+  ++|.|..-. +..+
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l-~~~~   76 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKL-SEKE   76 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcC-CHHH
Confidence            44679999999999999      333333 3343  788776665 4443

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.70  E-value=0.98  Score=44.84  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      .++++||.|+||+          -|......    .|.+-.-+ ..-.-=..|..|.+..+-+.++- ..+.++.|++++
T Consensus        40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~----~~~~~~pC-g~C~~C~~i~~g~h~D~~eldaa-s~~~Vd~iReli  113 (618)
T PRK14951         40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ----GGITATPC-GVCQACRDIDSGRFVDYTELDAA-SNRGVDEVQQLL  113 (618)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcccc----cCCCCCCC-CccHHHHHHHcCCCCceeecCcc-cccCHHHHHHHH
Confidence            5799999999999          22222111    11100000 00112224456777776666542 235678888888


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHHHhcc--------CCHHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIMEMNKR--------MTEEQAKKMYD  176 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~L~~R--------~seeei~~rl~  176 (225)
                      +.         .|++|+|    ++..+...|.+ .+-.|   +.||+.-.....+..++.|        ++++++.+.+.
T Consensus       114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~  193 (618)
T PRK14951        114 EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLT  193 (618)
T ss_pred             HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHH
Confidence            75         5678887    45566655544 23333   3444432111223234433        36777776666


Q ss_pred             HH
Q psy10228        177 RS  178 (225)
Q Consensus       177 ~a  178 (225)
                      +.
T Consensus       194 ~i  195 (618)
T PRK14951        194 QV  195 (618)
T ss_pred             HH
Confidence            53

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=93.66  E-value=0.73  Score=46.91  Aligned_cols=116  Identities=15%  Similarity=0.173  Sum_probs=58.6

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      .++|+||.|+||+          -|.+..  .++--|+   +     .--..|.+|.|.++-+++.- -.+.++.|++++
T Consensus        40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~--~~~PCG~---C-----~sCr~I~~G~h~DviEIDAa-s~rgVDdIReLI  108 (830)
T PRK07003         40 AYLFTGTRGVGKTTLSRIFAKALNCETGV--TSQPCGV---C-----RACREIDEGRFVDYVEMDAA-SNRGVDEMAALL  108 (830)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCccCC--CCCCCcc---c-----HHHHHHhcCCCceEEEeccc-ccccHHHHHHHH
Confidence            5789999999999          222111  0111111   1     01123455666666555432 235677777777


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHH-HHhc--------cCCHHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIM-EMNK--------RMTEEQAKKMYD  176 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~-~L~~--------R~seeei~~rl~  176 (225)
                      +.         .|++|||    ++..+...|.+ .+-.| .++||.. .+...|- .++.        +++.+++.++|.
T Consensus       109 e~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~  188 (830)
T PRK07003        109 ERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLE  188 (830)
T ss_pred             HHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHH
Confidence            63         4677776    34444444433 33333 3333332 2333333 2443        336777777776


Q ss_pred             HH
Q psy10228        177 RS  178 (225)
Q Consensus       177 ~a  178 (225)
                      +.
T Consensus       189 ~I  190 (830)
T PRK07003        189 RI  190 (830)
T ss_pred             HH
Confidence            64

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.50  E-value=0.93  Score=43.90  Aligned_cols=147  Identities=15%  Similarity=0.153  Sum_probs=74.4

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      .++++||.|+||+          -|.+.+  ..+-=|.-        ..-..|..|.+..+-+.++-. .+.+++|++++
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~--~~~pCg~C--------~~C~~i~~g~~~d~~eidaas-~~~v~~iR~l~  108 (509)
T PRK14958         40 AYLFTGTRGVGKTTISRILAKCLNCEKGV--SANPCNDC--------ENCREIDEGRFPDLFEVDAAS-RTKVEDTRELL  108 (509)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCCCC--CcccCCCC--------HHHHHHhcCCCceEEEEcccc-cCCHHHHHHHH
Confidence            5789999999999          232211  11111111        122345667766666665421 36777788877


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-e--EEEEecCCHHHHH-HHhcc--------CCHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-V--AIFIKPKSVESIM-EMNKR--------MTEEQAKKMY  175 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i--~IFI~pps~~~L~-~L~~R--------~seeei~~rl  175 (225)
                      +.         .|++|+|    ++..+...|.+ -+-.| .  .||+.. +...+- .++.|        ++++++.+++
T Consensus       109 ~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt-d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l  187 (509)
T PRK14958        109 DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT-DHHKLPVTVLSRCLQFHLAQLPPLQIAAHC  187 (509)
T ss_pred             HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC-ChHhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence            52         4577776    34555554443 23343 3  344432 222222 24433        4677777766


Q ss_pred             HHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228        176 DRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       176 ~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~  210 (225)
                      ....+.|. .+.+ -.+++  ..+.++-.+.+.|...+.
T Consensus       188 ~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia  226 (509)
T PRK14958        188 QHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIA  226 (509)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            65432221 1100 01122  124577777777766554

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.20  E-value=0.97  Score=45.34  Aligned_cols=148  Identities=14%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             ccEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHH
Q psy10228         51 EPFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDV  120 (225)
Q Consensus        51 ~~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v  120 (225)
                      ..++++||.|+||+          -|.+ ++. ++.-|    .+    ..-+.+..|.++..-++++... +.++.|+++
T Consensus        38 HAyLF~GPpGvGKTTlAriLAK~LnC~~-~~~-~~pCg----~C----~sC~~I~~g~hpDviEIDAAs~-~~VddIRel  106 (702)
T PRK14960         38 HAYLFTGTRGVGKTTIARILAKCLNCET-GVT-STPCE----VC----ATCKAVNEGRFIDLIEIDAASR-TKVEDTREL  106 (702)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCc-CCC-CCCCc----cC----HHHHHHhcCCCCceEEeccccc-CCHHHHHHH
Confidence            36799999999999          1111 110 01001    11    1223445566665555554322 457777777


Q ss_pred             HH---------cCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhc--------cCCHHHHHHH
Q psy10228        121 AE---------KGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNK--------RMTEEQAKKM  174 (225)
Q Consensus       121 ~~---------~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~--------R~seeei~~r  174 (225)
                      ++         +.|++|+|    ++..+...|.+ .+..|   +.||+. .+...+. .++.        +++.+++.++
T Consensus       107 i~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT-td~~kIp~TIlSRCq~feFkpLs~eEI~k~  185 (702)
T PRK14960        107 LDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT-TDPQKLPITVISRCLQFTLRPLAVDEITKH  185 (702)
T ss_pred             HHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE-CChHhhhHHHHHhhheeeccCCCHHHHHHH
Confidence            64         24677776    35555555543 23333   344443 2322222 2333        3467788777


Q ss_pred             HHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228        175 YDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       175 l~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~  210 (225)
                      +.+..+.|. .+.. -..++  ..+.++-.+.+.+..++.
T Consensus       186 L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa  225 (702)
T PRK14960        186 LGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA  225 (702)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            766533221 0100 01111  124567777777665553

>KOG3347|consensus

Probab=93.20  E-value=0.78  Score=38.01  Aligned_cols=140  Identities=13%  Similarity=0.298  Sum_probs=74.1

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE-EEE-eCCcce--eecHHHHHHHHHcCCeE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE-AGQ-YNDNLY--GTSVASVRDVAEKGKHC  127 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE-~~~-~~gn~Y--GTs~~sV~~v~~~gk~~  127 (225)
                      -|+|+|.+|+|||+.-.|-.   |.-|-.|.-+ |+     .++.+.|.+ |.+ |.-+.-  -.-++.++..+.+|- +
T Consensus         9 NILvtGTPG~GKstl~~~la---e~~~~~~i~i-sd-----~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~   78 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLA---EKTGLEYIEI-SD-----LVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-N   78 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHH---HHhCCceEeh-hh-----HHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-c
Confidence            38999999999995544433   6677777777 53     233344432 221 222111  123455666666664 5


Q ss_pred             EEEccHHHHHHHHhhccCC-----eEEEEecCCHHHHHH-HhccC-CHHHHHHHHHH-----HH-HHHHhhCCCCcEEEE
Q psy10228        128 ILDVSGNAIKRLQVASLYP-----VAIFIKPKSVESIME-MNKRM-TEEQAKKMYDR-----SM-KMEQEFGEFFTAVVQ  194 (225)
Q Consensus       128 ildv~~~gvk~L~~~~~~P-----i~IFI~pps~~~L~~-L~~R~-seeei~~rl~~-----a~-k~E~~~~~~fd~vI~  194 (225)
                      |+|-.+.        +++|     +++-+..|. .+|-. |..|+ +++.|+.-++-     .. +..-.|.+..-+-+.
T Consensus        79 IVDyHgC--------d~FperwfdlVvVLr~~~-s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~  149 (176)
T KOG3347|consen   79 IVDYHGC--------DFFPERWFDLVVVLRTPN-SVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQ  149 (176)
T ss_pred             EEeeccc--------CccchhheeEEEEEecCc-hHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecC
Confidence            6665443        4555     444455554 67765 88888 55544432221     11 011233333111222


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy10228        195 GDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       195 Nddleea~~~lk~iI~  210 (225)
                      .+..+++.+.|..++.
T Consensus       150 s~~~Eem~~ni~ri~~  165 (176)
T KOG3347|consen  150 SETKEEMESNISRILN  165 (176)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            4456888888777764

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=93.18  E-value=0.049  Score=44.47  Aligned_cols=66  Identities=12%  Similarity=0.059  Sum_probs=43.9

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCIL  129 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~il  129 (225)
                      ..=++|+||||+|||+++-.-.+.|      +.|+ +          ++.+.-...+|.++|++.+.++..++---.-|+
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~g------~~lv-a----------DD~v~v~~~~~~l~~~~p~~l~g~iEvRGlGiv   76 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKRG------HRLV-A----------DDRVVVKREGGRLVGRAPEALKGLIEIRGLGII   76 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC------CeEE-E----------CCEEEEEEECCEEEEeChHHhCCCcEecCceEE
Confidence            3468999999999996655433322      4566 3          235555556788999998877666655445566


Q ss_pred             Ecc
Q psy10228        130 DVS  132 (225)
Q Consensus       130 dv~  132 (225)
                      ++.
T Consensus        77 ~v~   79 (149)
T cd01918          77 DVP   79 (149)
T ss_pred             Ech
Confidence            654

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=93.17  E-value=0.47  Score=40.44  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=57.0

Q ss_pred             eEEEEccHHHHHHHHhhc---cCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHH
Q psy10228        126 HCILDVSGNAIKRLQVAS---LYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPE  199 (225)
Q Consensus       126 ~~ildv~~~gvk~L~~~~---~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dle  199 (225)
                      .|++|+..     |...+   .+..+|.|.+|..-.++++.+|.  +++++..++..-.-.+.. ...-|+|+.|+ +++
T Consensus       107 ~~~~eipl-----L~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~ek-~~~ad~vi~n~~~i~  180 (201)
T COG0237         107 YVVLEIPL-----LFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEEK-LALADVVIDNDGSIE  180 (201)
T ss_pred             ceEEEchH-----HHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCCHHHH-HhhcCChhhcCCCHH
Confidence            67777664     33332   24578888887767777877775  667777766554322222 46789999988 799


Q ss_pred             HHHHHHHHHHHhccC
Q psy10228        200 DIYQKVKEVIQEQSG  214 (225)
Q Consensus       200 ea~~~lk~iI~~~~~  214 (225)
                      .++.++..++.....
T Consensus       181 ~l~~~i~~~~~~~~~  195 (201)
T COG0237         181 NLLEQIEKLLKELLG  195 (201)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876544

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=93.17  E-value=0.054  Score=46.33  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=25.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHHhccCCceeeeC
Q psy10228        188 FFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPS  221 (225)
Q Consensus       188 ~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~  221 (225)
                      .-+.+++.++++++......++.-..+...|.-.
T Consensus       180 ~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~  213 (231)
T COG3840         180 KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS  213 (231)
T ss_pred             CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence            4577778888888888777777777777777543

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.03  E-value=0.037  Score=49.79  Aligned_cols=51  Identities=18%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             cccchhhhhhccccchhhhhccccceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228          4 HDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~   64 (225)
                      .|+|-|||+|=+|--.....+....   ++  |....     ......+|-|+||+|||||
T Consensus        26 ~~iy~pl~~~~~~~~~~~~~~~~~~---~~--f~~~~-----~~~~p~IIGIaG~~GSGKS   76 (290)
T TIGR00554        26 ATIYLPLSRLLNFYISSNLRRQAVL---EQ--FLGTN-----GAKIPYIISIAGSVAVGKS   76 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHH---HH--HHhcc-----cCCCCEEEEEECCCCCCHH
Confidence            4788899998888543332222111   01  11111     1122236679999999999

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.96  E-value=0.05  Score=47.39  Aligned_cols=17  Identities=6%  Similarity=0.038  Sum_probs=15.0

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.++|+||||||||
T Consensus        26 ~~Gevv~iiGpSGSGKS   42 (240)
T COG1126          26 EKGEVVVIIGPSGSGKS   42 (240)
T ss_pred             cCCCEEEEECCCCCCHH
Confidence            34679999999999999

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=92.92  E-value=1.5  Score=39.29  Aligned_cols=77  Identities=10%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             HHHHHhh-ccCCeEEEEecCCHHHHHH--HhccCCHHHHHHHHHHHHHHHHhh----CCCCcEEEECC--CHHHHHHHHH
Q psy10228        136 IKRLQVA-SLYPVAIFIKPKSVESIME--MNKRMTEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD--MPEDIYQKVK  206 (225)
Q Consensus       136 vk~L~~~-~~~Pi~IFI~pps~~~L~~--L~~R~seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd--dleea~~~lk  206 (225)
                      +..|+.. .+.|.++|+.+.+-.-+++  .-+|..+=....++..+.+.|.++    .+..|.||...  +.-+.-+.|+
T Consensus        73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~  152 (286)
T COG1660          73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIR  152 (286)
T ss_pred             HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHH
Confidence            3445544 3458899999976443333  333432211222355555556554    35677888765  4566677777


Q ss_pred             HHHHhc
Q psy10228        207 EVIQEQ  212 (225)
Q Consensus       207 ~iI~~~  212 (225)
                      ..+...
T Consensus       153 ~~f~~~  158 (286)
T COG1660         153 TRFLGK  158 (286)
T ss_pred             HHHccC
Confidence            766643

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=92.86  E-value=0.35  Score=39.93  Aligned_cols=87  Identities=20%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             CCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHH
Q psy10228        106 NDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQ  183 (225)
Q Consensus       106 ~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~  183 (225)
                      ...++-...+.|.+.+++| .||+.--. |---|+.. -..+.|||..|....++++.++  ++++++.+.+....+...
T Consensus        78 ~~~~~~~~~~~i~~la~~~-~~Vi~GR~-a~~il~~~-~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~  154 (179)
T PF13189_consen   78 DDKIFRAQSEIIRELAAKG-NCVIVGRC-ANYILRDI-PNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRR  154 (179)
T ss_dssp             --HHHHHHHHHHHHHHH----EEEESTT-HHHHTTT--TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccC-CEEEEecC-HhhhhCCC-CCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3445555566778887777 45544322 21124321 1348899999876667774433  477888777776543322


Q ss_pred             hh-----------CCCCcEEEEC
Q psy10228        184 EF-----------GEFFTAVVQG  195 (225)
Q Consensus       184 ~~-----------~~~fd~vI~N  195 (225)
                      .|           ...||.+|..
T Consensus       155 ~~~~~~~~~~~~d~~~YDLvint  177 (179)
T PF13189_consen  155 AYYKYYTGIDWGDPSNYDLVINT  177 (179)
T ss_dssp             HHHHHH-SS-TTBGGG-SEEEEE
T ss_pred             HHHHHHhCCCCCCchhceEEEeC
Confidence            22           2467777653

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.84  E-value=0.78  Score=40.03  Aligned_cols=53  Identities=21%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCeEEEEccHHHHHHHHhh------ccC-C-eEEEEecCCHHHHHHH-hccC---CHHHHHHHHHHH
Q psy10228        124 GKHCILDVSGNAIKRLQVA------SLY-P-VAIFIKPKSVESIMEM-NKRM---TEEQAKKMYDRS  178 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~------~~~-P-i~IFI~pps~~~L~~L-~~R~---seeei~~rl~~a  178 (225)
                      +..+|+| +.+-++.++..      ..+ + .+|++..| .+.+.+. +.|+   .+|-+++++++.
T Consensus        74 n~~VIvD-dtNYyksmRrqL~ceak~~~tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~Rf  138 (261)
T COG4088          74 NYLVIVD-DTNYYKSMRRQLACEAKERKTTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDRF  138 (261)
T ss_pred             ceEEEEe-cccHHHHHHHHHHHHHHhcCCceEEEEEccC-HHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence            6788877 44444444321      222 3 67898876 5666653 3444   356777777776

>PHA00729 NTP-binding motif containing protein

Probab=92.80  E-value=0.095  Score=45.61  Aligned_cols=43  Identities=14%  Similarity=0.034  Sum_probs=25.6

Q ss_pred             cEEEEccCCCCCCCcccCCCC-------------CCCCCCcceEEecCHHHHHHhhh
Q psy10228         52 PFMLCYTQDDPTTEDTTRARR-------------EYEVDGRDYHFVSSREQMEKDIQ   95 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R-------------~~E~dG~dY~FV~s~eef~~~i~   95 (225)
                      -|+|+|++|+|||+...+-.+             .+--+|...+|+ +.+++...+.
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~   74 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQ   74 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHH
Confidence            589999999999921111100             001234556777 7777776664

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.74  E-value=0.73  Score=41.71  Aligned_cols=120  Identities=16%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee--cHHHHHHHHHcCCeEEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT--SVASVRDVAEKGKHCIL  129 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT--s~~sV~~v~~~gk~~il  129 (225)
                      ++|++|++||||+                    +   .|..||      +|  -+-|.||.  +++.=-+.+-+++-||+
T Consensus       129 LviiVGaTGSGKS--------------------T---tmAaMi------~y--RN~~s~gHIiTIEDPIEfih~h~~CIv  177 (375)
T COG5008         129 LVIIVGATGSGKS--------------------T---TMAAMI------GY--RNKNSTGHIITIEDPIEFIHKHKRCIV  177 (375)
T ss_pred             eEEEECCCCCCch--------------------h---hHHHHh------cc--cccCCCCceEEecChHHHHhcccceeE
Confidence            7899999999998                    2   344443      12  24466662  33322233345677887


Q ss_pred             E-----ccHHHHH-HHHhh-ccCCeEEEEec-CCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHH
Q psy10228        130 D-----VSGNAIK-RLQVA-SLYPVAIFIKP-KSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDI  201 (225)
Q Consensus       130 d-----v~~~gvk-~L~~~-~~~Pi~IFI~p-ps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea  201 (225)
                      -     +|...+. +|+.. ...|-+|.|-- .|                ++.++.|..+ -+-+|+|=+++.-++.++|
T Consensus       178 TQREvGvDTesw~~AlkNtlRQapDvI~IGEvRs----------------retMeyAi~f-AeTGHLcmaTLHAN~anQa  240 (375)
T COG5008         178 TQREVGVDTESWEVALKNTLRQAPDVILIGEVRS----------------RETMEYAIQF-AETGHLCMATLHANNANQA  240 (375)
T ss_pred             EeeeeccchHHHHHHHHHHHhcCCCeEEEeeccc----------------HhHHHHHHHH-HhcCceEEEEeccCCchHH
Confidence            3     3333322 34442 34677888742 22                2235555432 2447888899988888999


Q ss_pred             HHHHHHHHHhccCCceee
Q psy10228        202 YQKVKEVIQEQSGPSIWV  219 (225)
Q Consensus       202 ~~~lk~iI~~~~~~~~WV  219 (225)
                      ++++..+.-+++....|.
T Consensus       241 leRIinffP~Err~Qll~  258 (375)
T COG5008         241 LERIINFFPEERREQLLI  258 (375)
T ss_pred             HHHHHhhCcHHHhhhhHH
Confidence            999988887777777765

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.71  E-value=1.1  Score=41.16  Aligned_cols=13  Identities=23%  Similarity=0.232  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|.||+|+||+
T Consensus        40 ~~L~~Gp~G~GKT   52 (363)
T PRK14961         40 AWLLSGTRGVGKT   52 (363)
T ss_pred             EEEEecCCCCCHH
Confidence            5789999999999

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=92.64  E-value=0.055  Score=49.79  Aligned_cols=19  Identities=21%  Similarity=0.025  Sum_probs=16.7

Q ss_pred             CCCCCccEEEEccCCCCCC
Q psy10228         46 DGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        46 ~~~~~~~ivl~GpsgsGK~   64 (225)
                      +-.++++++|+||||||||
T Consensus        25 ~i~~Gef~vllGPSGcGKS   43 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKS   43 (338)
T ss_pred             EEcCCCEEEEECCCCCCHH
Confidence            4556789999999999999

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=92.62  E-value=0.043  Score=41.52  Aligned_cols=13  Identities=0%  Similarity=0.031  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+||||||||
T Consensus         1 vI~I~G~~gsGKS   13 (121)
T PF13207_consen    1 VIIISGPPGSGKS   13 (121)
T ss_dssp             EEEEEESTTSSHH
T ss_pred             CEEEECCCCCCHH
Confidence            4899999999999

...

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.56  E-value=0.98  Score=44.20  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      .+++.||.|+||+          -+.+  +..++--|.   +     .--..+.++.|....++++.. -+.++.+++++
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~--~~~~~pCg~---C-----~sC~~i~~~~~~dlieidaas-~~gvd~ir~ii  108 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNCKT--GVTAEPCNK---C-----ENCVAINNNSFIDLIEIDAAS-RTGVEETKEIL  108 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCC--CCCCCCCcc---c-----HHHHHHhcCCCCceEEeeccc-ccCHHHHHHHH
Confidence            4789999999999          2211  111111121   1     111234456565555554311 14456666654


Q ss_pred             H---------cCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhccC--------CHHHHHHHH
Q psy10228        122 E---------KGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNKRM--------TEEQAKKMY  175 (225)
Q Consensus       122 ~---------~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~R~--------seeei~~rl  175 (225)
                      +         ..+++|+|    ++..+...|.. .+-.|   +.||+.. +...+- .++.|.        +++++.+.+
T Consensus       109 ~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt-d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L  187 (546)
T PRK14957        109 DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT-DYHKIPVTILSRCIQLHLKHISQADIKDQL  187 (546)
T ss_pred             HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC-ChhhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence            3         23455565    24444444443 23333   3455553 333333 355443        577777777


Q ss_pred             HHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHH
Q psy10228        176 DRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVI  209 (225)
Q Consensus       176 ~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI  209 (225)
                      .+..+.|. .+.. -.+++  ..+.|+..+++.|..++
T Consensus       188 ~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i  225 (546)
T PRK14957        188 KIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI  225 (546)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            66432221 0000 01111  12456777766666554

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.55  E-value=1.9  Score=36.16  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             ccEEEEccCCCCCCC--cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce--e-ecHHHHHHHHHcCC
Q psy10228         51 EPFMLCYTQDDPTTE--DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--G-TSVASVRDVAEKGK  125 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s--~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y--G-Ts~~sV~~v~~~gk  125 (225)
                      ++.|+.||.|||||+  .-+=++    ..+ ...|| +.+++...|-.-.==      -.-+  | .-..-++-.+..|+
T Consensus         3 ~l~IvaG~NGsGKstv~~~~~~~----~~~-~~~~V-N~D~iA~~i~p~~p~------~~~i~A~r~ai~~i~~~I~~~~   70 (187)
T COG4185           3 RLDIVAGPNGSGKSTVYASTLAP----LLP-GIVFV-NADEIAAQISPDNPT------SAAIQAARVAIDRIARLIDLGR   70 (187)
T ss_pred             eEEEEecCCCCCceeeeeccchh----hcC-CeEEE-CHHHHhhhcCCCCch------HHHHHHHHHHHHHHHHHHHcCC
Confidence            467889999999992  222222    333 45789 889988776322100      0001  0 11222334456677


Q ss_pred             eEEEEc--cHHHH-HHHHh---hccCCeEEEEecCCHHH-HHHHhcc----C---CHHHHHHHHHHHHHHHHhhCCCCcE
Q psy10228        126 HCILDV--SGNAI-KRLQV---ASLYPVAIFIKPKSVES-IMEMNKR----M---TEEQAKKMYDRSMKMEQEFGEFFTA  191 (225)
Q Consensus       126 ~~ildv--~~~gv-k~L~~---~~~~Pi~IFI~pps~~~-L~~L~~R----~---seeei~~rl~~a~k~E~~~~~~fd~  191 (225)
                      ...++.  ++..+ +.++.   .+++-...|+..++.+- +++.+.|    +   .|+.|++|+.+..++=..+.+.+|-
T Consensus        71 ~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr  150 (187)
T COG4185          71 PFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADR  150 (187)
T ss_pred             CcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcce
Confidence            766653  44443 22333   35555556777777642 3344433    2   3788999999975433456688885


Q ss_pred             EEE
Q psy10228        192 VVQ  194 (225)
Q Consensus       192 vI~  194 (225)
                      ..+
T Consensus       151 ~~I  153 (187)
T COG4185         151 ATI  153 (187)
T ss_pred             eEE
Confidence            433

>TIGR00959 ffh signal recognition particle protein

Probab=92.43  E-value=1.5  Score=41.68  Aligned_cols=37  Identities=14%  Similarity=0.003  Sum_probs=24.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228        188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP  224 (225)
Q Consensus       188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~  224 (225)
                      ..+.+|.|- |-+.-...+..+.....-|..|+...++
T Consensus       240 ~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~  277 (428)
T TIGR00959       240 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEK  277 (428)
T ss_pred             CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCC
Confidence            356777664 4445556677777777777777777654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.37  E-value=1.3  Score=37.16  Aligned_cols=13  Identities=8%  Similarity=-0.046  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|.|+|++|+|||
T Consensus         7 ki~ITG~PGvGKt   19 (179)
T COG1618           7 KIFITGRPGVGKT   19 (179)
T ss_pred             EEEEeCCCCccHH
Confidence            4899999999999

>PLN02199 shikimate kinase

Probab=92.33  E-value=1.1  Score=40.75  Aligned_cols=103  Identities=10%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-cee-ecHHHHHHHHHcCCeE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYG-TSVASVRDVAEKGKHC  127 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YG-Ts~~sV~~v~~~gk~~  127 (225)
                      ...|+|+|..|||||+.--.-.     .--.|.|+++...+++....-..-+.....|. .|- .=.+.+++.... ..|
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA-----~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~-~~~  175 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMS-----KVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSR-YQV  175 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-----HHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-CCE
Confidence            4579999999999992211110     00246688444445553221111111111221 111 222334444333 356


Q ss_pred             EEEccH------HHHHHHHhhccCCeEEEEecCCHHHHHH-Hh
Q psy10228        128 ILDVSG------NAIKRLQVASLYPVAIFIKPKSVESIME-MN  163 (225)
Q Consensus       128 ildv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~  163 (225)
                      |+...+      .....|+    ..++|||..| .+.|.+ +.
T Consensus       176 VIStGGG~V~~~~n~~~L~----~G~vV~Ldas-~E~l~~RL~  213 (303)
T PLN02199        176 VVSTGGGAVIRPINWKYMH----KGISIWLDVP-LEALAHRIA  213 (303)
T ss_pred             EEECCCcccCCHHHHHHHh----CCeEEEEECC-HHHHHHHHh
Confidence            665443      2222232    3578999986 455554 65

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=92.31  E-value=0.27  Score=44.77  Aligned_cols=15  Identities=0%  Similarity=-0.051  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...|+|+|+||+|||
T Consensus       162 ~~~~~~~G~~~~gks  176 (325)
T TIGR01526       162 VKTVAILGGESTGKS  176 (325)
T ss_pred             CcEEEEECCCCCCHH
Confidence            457999999999999

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.23  E-value=1.1  Score=44.84  Aligned_cols=121  Identities=14%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      -++|+||.|.||+          -|....   + ..|..-.-+ -.-..-..|..|.|..+-++++-. .+.++.|++++
T Consensus        40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~---~-~~g~~~~PC-G~C~sC~~I~aG~hpDviEIdAas-~~gVDdIReLi  113 (700)
T PRK12323         40 AYLFTGTRGVGKTTLSRILAKSLNCTGAD---G-EGGITAQPC-GQCRACTEIDAGRFVDYIEMDAAS-NRGVDEMAQLL  113 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcc---c-cccCCCCCC-cccHHHHHHHcCCCCcceEecccc-cCCHHHHHHHH
Confidence            5799999999999          232111   1 111110000 001223355667766666655421 35677888776


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEecC-CHHHHHH-Hhc--------cCCHHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKPK-SVESIME-MNK--------RMTEEQAKKMYD  176 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~pp-s~~~L~~-L~~--------R~seeei~~rl~  176 (225)
                      +.         .|++|+|    ++..+...|-+ .+-.| .++||... +...|.. ++.        +++.+++.+++.
T Consensus       114 e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~  193 (700)
T PRK12323        114 DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLD  193 (700)
T ss_pred             HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHH
Confidence            53         3567776    34555555443 33333 33443332 2333322 332        335677776666


Q ss_pred             HH
Q psy10228        177 RS  178 (225)
Q Consensus       177 ~a  178 (225)
                      +.
T Consensus       194 ~I  195 (700)
T PRK12323        194 AI  195 (700)
T ss_pred             HH
Confidence            54

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=92.20  E-value=1.2  Score=41.91  Aligned_cols=156  Identities=8%  Similarity=0.039  Sum_probs=73.2

Q ss_pred             CCccEEEEccCCCCCCCcccCCCCCCCCCCcce-EEecCHHHHHHhhh-CCcEEEEEEeCCcceeecHHHHHHHHHcCCe
Q psy10228         49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDY-HFVSSREQMEKDIQ-NHLFIEAGQYNDNLYGTSVASVRDVAEKGKH  126 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY-~FV~s~eef~~~i~-~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~  126 (225)
                      ..+.|+|+|++|||||+.+..-.+.   -|..+ .-. .++-...... .+.-+.|..|..-.+|.....-..+....+.
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~---~g~~~v~E~-~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a~~~  293 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANI---FNTTSAWEY-GREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKV  293 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH---hCCCeeeec-cHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhcCCe
Confidence            3468999999999999322111110   01000 011 3343332221 1122223334444566666544455556788


Q ss_pred             EEEEccHHHHHH---HH------------hhccCCeEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhh-CCCC
Q psy10228        127 CILDVSGNAIKR---LQ------------VASLYPVAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEF-GEFF  189 (225)
Q Consensus       127 ~ildv~~~gvk~---L~------------~~~~~Pi~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~-~~~f  189 (225)
                      +++|.+.-....   ..            ....|. .+|+.+|+..-+.. ++ -+.+++.+..+....+  ..+ ...+
T Consensus       294 ~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryD-lvlll~pd~Pwv~DGlR-~~~D~e~R~~f~~~l~--~~l~~~g~  369 (399)
T PRK08099        294 AFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFD-LTILLENNTPWVADGLR-SLGSSVDRKRFQNLLK--EMLKENNI  369 (399)
T ss_pred             EEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCC-EEEEcCCCCCcccCCcc-cCCCHHHHHHHHHHHH--HHHHHcCC
Confidence            888875422211   11            011122 34554433222211 22 1234445555554432  222 2356


Q ss_pred             cEEEEC-CCHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~N-ddleea~~~lk~iI~~~  212 (225)
                      .+++++ .+.++=+.+...+|.+.
T Consensus       370 ~~v~l~~g~~~eR~~~a~~~i~~~  393 (399)
T PRK08099        370 EYVHVESPDYDKRYLRCVELVDQM  393 (399)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHH
Confidence            688885 67777777666666653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=92.10  E-value=1.3  Score=44.59  Aligned_cols=148  Identities=16%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      -++|+||+|+||+          -|....  .++--|.        -..-..+..|.|+.+-++++. -++.++.|++++
T Consensus        40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~--~~~pCg~--------C~sCr~i~~g~~~DvlEidaA-s~~gVd~IRell  108 (709)
T PRK08691         40 AYLLTGTRGVGKTTIARILAKSLNCENAQ--HGEPCGV--------CQSCTQIDAGRYVDLLEIDAA-SNTGIDNIREVL  108 (709)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCC--CCCCCcc--------cHHHHHHhccCccceEEEecc-ccCCHHHHHHHH
Confidence            5899999999999          222211  0111111        112234555666655555432 246677888877


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHHHh--------ccCCHHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIMEMN--------KRMTEEQAKKMYD  176 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~L~--------~R~seeei~~rl~  176 (225)
                      +.         .+++|+|    ++..+...|.+ .+-.|   ++||+.......+..++        ++++.+++.++|.
T Consensus       109 e~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~  188 (709)
T PRK08691        109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLA  188 (709)
T ss_pred             HHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHH
Confidence            52         3566666    23334333332 23232   34554421111111122        2446777777776


Q ss_pred             HHHHHHH-hhCC-CCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228        177 RSMKMEQ-EFGE-FFTAVV--QGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       177 ~a~k~E~-~~~~-~fd~vI--~Nddleea~~~lk~iI~  210 (225)
                      +..+.|. .+.+ -...++  .+.++-.+.+.|..++.
T Consensus       189 ~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia  226 (709)
T PRK08691        189 HVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA  226 (709)
T ss_pred             HHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            5432220 0000 011221  23466666666655544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=92.01  E-value=0.72  Score=37.26  Aligned_cols=13  Identities=23%  Similarity=0.043  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++++||+|+|||
T Consensus         2 ~~~~~G~~G~GKT   14 (173)
T cd03115           2 VILLVGLQGVGKT   14 (173)
T ss_pred             EEEEECCCCCCHH
Confidence            5789999999999

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.92  E-value=2  Score=41.52  Aligned_cols=147  Identities=16%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      -++++||+|+||+          -|..-+  ..+--|.-        .-=..|.++.....-+.++- -.++++.|++++
T Consensus        37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~--~~~pCg~C--------~~C~~i~~~~~~Dv~eidaa-s~~~vddIR~Ii  105 (491)
T PRK14964         37 SILLVGASGVGKTTCARIISLCLNCSNGP--TSDPCGTC--------HNCISIKNSNHPDVIEIDAA-SNTSVDDIKVIL  105 (491)
T ss_pred             eEEEECCCCccHHHHHHHHHHHHcCcCCC--CCCCcccc--------HHHHHHhccCCCCEEEEecc-cCCCHHHHHHHH
Confidence            5899999999999          111100  00111111        11113344444444444432 125677788776


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHH-HhccC--------CHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIME-MNKRM--------TEEQAKKMY  175 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~-L~~R~--------seeei~~rl  175 (225)
                      +.         .|++|+|    ++..+...|.+ -+-.|   +.||+. ...+.|-. ++.|.        +++++.+++
T Consensus       106 e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat-te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L  184 (491)
T PRK14964        106 ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT-TEVKKIPVTIISRCQRFDLQKIPTDKLVEHL  184 (491)
T ss_pred             HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe-CChHHHHHHHHHhheeeecccccHHHHHHHH
Confidence            43         4567776    24445544543 23233   344444 34444443 55443        567777666


Q ss_pred             HHHHHHHH-hhCC-CCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228        176 DRSMKMEQ-EFGE-FFTAVV--QGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       176 ~~a~k~E~-~~~~-~fd~vI--~Nddleea~~~lk~iI~  210 (225)
                      .+..+.|. .+.+ -..+++  .+.++-.+.+.|..++.
T Consensus       185 ~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~  223 (491)
T PRK14964        185 VDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAI  223 (491)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            66432221 0100 011221  24567777777766654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.76  E-value=0.11  Score=48.15  Aligned_cols=29  Identities=17%  Similarity=-0.019  Sum_probs=20.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228         33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~   64 (225)
                      .|++++..+.   +-..++++.|.||||||||
T Consensus        17 ~~~av~~isl---~i~~Gef~~lLGPSGcGKT   45 (352)
T COG3842          17 DFTAVDDISL---DIKKGEFVTLLGPSGCGKT   45 (352)
T ss_pred             CeeEEeccee---eecCCcEEEEECCCCCCHH
Confidence            5566655543   2333578999999999999

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.62  E-value=1.4  Score=42.80  Aligned_cols=115  Identities=17%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      -++++||+|+||+          -+.+..  .++--|.   +     .--..+.+|.|..+-+.++.. .+.++.|++++
T Consensus        40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~--~~~pcg~---C-----~~C~~i~~~~~~d~~ei~~~~-~~~vd~ir~l~  108 (527)
T PRK14969         40 AYLFTGTRGVGKTTLARILAKSLNCETGV--TATPCGV---C-----SACLEIDSGRFVDLIEVDAAS-NTQVDAMRELL  108 (527)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCCCC---C-----HHHHHHhcCCCCceeEeeccc-cCCHHHHHHHH
Confidence            4789999999999          222211  0011111   0     111235566666665555422 36778888776


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHh--------ccCCHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMN--------KRMTEEQAKKMY  175 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~--------~R~seeei~~rl  175 (225)
                      +.         .+++|+|    ++..+...|-+ -+-.|   +.||+.. +...+. .++        ++++.+++.+++
T Consensus       109 ~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~-d~~kil~tI~SRc~~~~f~~l~~~~i~~~L  187 (527)
T PRK14969        109 DNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPPLIVSHL  187 (527)
T ss_pred             HHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC-ChhhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence            52         2466665    24444444332 33333   3444442 222222 223        334677777666


Q ss_pred             HHH
Q psy10228        176 DRS  178 (225)
Q Consensus       176 ~~a  178 (225)
                      .+.
T Consensus       188 ~~i  190 (527)
T PRK14969        188 QHI  190 (527)
T ss_pred             HHH
Confidence            554

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.60  E-value=0.085  Score=46.49  Aligned_cols=19  Identities=5%  Similarity=-0.162  Sum_probs=16.6

Q ss_pred             CCCCCccEEEEccCCCCCC
Q psy10228         46 DGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        46 ~~~~~~~ivl~GpsgsGK~   64 (225)
                      +-..++++.|+||||||||
T Consensus        25 ~v~~GEfvsilGpSGcGKS   43 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKS   43 (248)
T ss_pred             EECCCCEEEEECCCCCCHH
Confidence            4556789999999999999

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=91.23  E-value=2.3  Score=41.25  Aligned_cols=99  Identities=24%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             ecHHHHHHHHHc---------CCeEEEE----ccHHHHHHHHhh-ccC-CeEEEEec-CCHHHHHH-HhccC--------
Q psy10228        112 TSVASVRDVAEK---------GKHCILD----VSGNAIKRLQVA-SLY-PVAIFIKP-KSVESIME-MNKRM--------  166 (225)
Q Consensus       112 Ts~~sV~~v~~~---------gk~~ild----v~~~gvk~L~~~-~~~-Pi~IFI~p-ps~~~L~~-L~~R~--------  166 (225)
                      ++++.|+++++.         .+++|+|    ++..+...|... +-. +.++||-. ...+.+-. ++.|.        
T Consensus       108 ~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~l  187 (507)
T PRK06645        108 TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRL  187 (507)
T ss_pred             CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCC
Confidence            567788877643         4566666    234444444432 222 33444322 33444433 55443        


Q ss_pred             CHHHHHHHHHHHHHHHH-hhC-CCCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228        167 TEEQAKKMYDRSMKMEQ-EFG-EFFTAVV--QGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       167 seeei~~rl~~a~k~E~-~~~-~~fd~vI--~Nddleea~~~lk~iI~  210 (225)
                      +++++.+++....+.|. .+. .-.++++  .+.++-.+.+.|..++.
T Consensus       188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~  235 (507)
T PRK06645        188 SFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS  235 (507)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            57777777765533221 000 0011221  34578888777777654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=91.03  E-value=0.17  Score=44.23  Aligned_cols=15  Identities=7%  Similarity=-0.101  Sum_probs=13.2

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...++|.||+|+|||
T Consensus        42 ~~~vll~GppGtGKT   56 (261)
T TIGR02881        42 VLHMIFKGNPGTGKT   56 (261)
T ss_pred             cceEEEEcCCCCCHH
Confidence            346899999999999

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=90.76  E-value=6.9  Score=32.29  Aligned_cols=143  Identities=17%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             EccCCCCCC----CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228         56 CYTQDDPTT----EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV  131 (225)
Q Consensus        56 ~GpsgsGK~----s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv  131 (225)
                      +|.||||||    ..-++-- ..=++|-|.|   +++..++|- .|.=+--..--+++ ..-.+......+.|++.|+-|
T Consensus         1 MGVsG~GKStvg~~lA~~lg-~~fidGDdlH---p~aNi~KM~-~GiPL~DdDR~pWL-~~l~~~~~~~~~~~~~~vi~C   74 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG-AKFIDGDDLH---PPANIEKMS-AGIPLNDDDRWPWL-EALGDAAASLAQKNKHVVIAC   74 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC-CceecccccC---CHHHHHHHh-CCCCCCcchhhHHH-HHHHHHHHHhhcCCCceEEec
Confidence            599999999    1111111 1124555533   566666652 23222111111111 111222333445688888777


Q ss_pred             cHHHHHHHHh---hccCC--eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCcEEEE-CC-CHH
Q psy10228        132 SGNAIKRLQV---ASLYP--VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFTAVVQ-GD-MPE  199 (225)
Q Consensus       132 ~~~gvk~L~~---~~~~P--i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd~vI~-Nd-dle  199 (225)
                      +-  +|+-..   ++-.|  .+||+..+ .+.+. +|..|-    ..+-++..++.   +|.--... |.+.+ .+ .++
T Consensus        75 SA--LKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~~~ll~SQfa~---LE~P~~de-~vi~idi~~~~e  147 (161)
T COG3265          75 SA--LKRSYRDLLREANPGLRFVYLDGD-FDLILERMKARKGHFMPASLLDSQFAT---LEEPGADE-DVLTIDIDQPPE  147 (161)
T ss_pred             HH--HHHHHHHHHhccCCCeEEEEecCC-HHHHHHHHHhcccCCCCHHHHHHHHHH---hcCCCCCC-CEEEeeCCCCHH
Confidence            63  332211   12344  56888774 45554 477764    23333333332   23222333 55443 34 589


Q ss_pred             HHHHHHHHHHHh
Q psy10228        200 DIYQKVKEVIQE  211 (225)
Q Consensus       200 ea~~~lk~iI~~  211 (225)
                      +.++++.+.+..
T Consensus       148 ~vv~~~~~~l~~  159 (161)
T COG3265         148 EVVAQALAWLKE  159 (161)
T ss_pred             HHHHHHHHHHhc
Confidence            999888887764

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=90.69  E-value=0.58  Score=39.08  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             CeEEEEccHHHHHHHHh---hccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228        125 KHCILDVSGNAIKRLQV---ASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP  198 (225)
Q Consensus       125 k~~ildv~~~gvk~L~~---~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl  198 (225)
                      +.+++|+..     |-.   ...+..+|+|.+|....++++.+|  ++.+++..|+..-...+ +.....|+||.|+ ++
T Consensus       105 ~~~v~e~pL-----L~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~~Q~~~~-~k~~~ad~vI~N~g~~  178 (180)
T PF01121_consen  105 KVVVVEIPL-----LFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIASQMPDE-EKRKRADFVIDNNGSL  178 (180)
T ss_dssp             SEEEEE-TT-----TTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHHTS--HH-HHHHH-SEEEE-SSHH
T ss_pred             CEEEEEcch-----hhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHHhCCCHH-HHHHhCCEEEECCCCC
Confidence            678888654     222   234567899998866667775444  58899988877643222 2235789999998 45


Q ss_pred             H
Q psy10228        199 E  199 (225)
Q Consensus       199 e  199 (225)
                      +
T Consensus       179 ~  179 (180)
T PF01121_consen  179 E  179 (180)
T ss_dssp             H
T ss_pred             C
Confidence            4

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=90.69  E-value=0.33  Score=43.52  Aligned_cols=13  Identities=15%  Similarity=0.020  Sum_probs=11.8

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|.|+|+||||||
T Consensus         1 IIgItG~SGSGKT   13 (277)
T cd02029           1 VIAVTGSSGAGTT   13 (277)
T ss_pred             CEEEECCCCCCHH
Confidence            4789999999999

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=90.68  E-value=0.16  Score=45.71  Aligned_cols=14  Identities=14%  Similarity=-0.012  Sum_probs=12.6

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      -.|.|+|.||||||
T Consensus         6 piI~ItG~SGsGKT   19 (290)
T PRK15453          6 PIIAVTGSSGAGTT   19 (290)
T ss_pred             cEEEEECCCCCCHH
Confidence            46889999999999

>PLN03025 replication factor C subunit; Provisional

Probab=90.68  E-value=2.2  Score=38.33  Aligned_cols=13  Identities=15%  Similarity=0.123  Sum_probs=11.8

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|.||+|+||+
T Consensus        36 ~lll~Gp~G~GKT   48 (319)
T PLN03025         36 NLILSGPPGTGKT   48 (319)
T ss_pred             eEEEECCCCCCHH
Confidence            3789999999999

>cd01895 EngA2 EngA2 subfamily

Probab=90.62  E-value=0.83  Score=35.51  Aligned_cols=13  Identities=0%  Similarity=-0.100  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|+|+|++|+|||
T Consensus         4 ~i~i~G~~~~GKs   16 (174)
T cd01895           4 RIAIIGRPNVGKS   16 (174)
T ss_pred             EEEEEcCCCCCHH
Confidence            4899999999999

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.51  E-value=0.12  Score=46.14  Aligned_cols=18  Identities=17%  Similarity=0.032  Sum_probs=15.6

Q ss_pred             CCCCccEEEEccCCCCCC
Q psy10228         47 GSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~   64 (225)
                      -..+++++|+||||||||
T Consensus        24 I~~gef~vliGpSGsGKT   41 (309)
T COG1125          24 IEEGEFLVLIGPSGSGKT   41 (309)
T ss_pred             ecCCeEEEEECCCCCcHH
Confidence            445679999999999999

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=90.32  E-value=4.2  Score=41.81  Aligned_cols=96  Identities=18%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             cHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHH-HhccC--------
Q psy10228        113 SVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIME-MNKRM--------  166 (225)
Q Consensus       113 s~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~-L~~R~--------  166 (225)
                      .++.|+++.         ...|++|||    ++..+...|.+ .+-.|   ++||+. .+.+.|.. |+.|.        
T Consensus       101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIrSRc~~v~F~~l  179 (824)
T PRK07764        101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIRSRTHHYPFRLV  179 (824)
T ss_pred             CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHHhheeEEEeeCC
Confidence            467777654         235677877    45666666554 33333   455555 44555544 77663        


Q ss_pred             CHHHHHHHHHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHH
Q psy10228        167 TEEQAKKMYDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVI  209 (225)
Q Consensus       167 seeei~~rl~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI  209 (225)
                      +.+++.+.|.+..+.|- .+.. ...++  ..+.|+-.+++.|.+++
T Consensus       180 ~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi  226 (824)
T PRK07764        180 PPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL  226 (824)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            57777766665322110 0000 01111  22456777777666655

>KOG3062|consensus

Probab=90.31  E-value=0.48  Score=41.73  Aligned_cols=52  Identities=31%  Similarity=0.311  Sum_probs=32.8

Q ss_pred             ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccC---------CeEEEEecCCHHHHHHHh
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLY---------PVAIFIKPKSVESIMEMN  163 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~---------Pi~IFI~pps~~~L~~L~  163 (225)
                      .-|-.+++|+.-+.+|.++|+| +.+-|+-.++ ++|         -.+||..+|- +..++.+
T Consensus        59 lRg~L~S~v~R~Lsk~~iVI~D-slNyIKGfRY-eLyC~ak~~~tt~Cvv~t~vp~-e~~r~~N  119 (281)
T KOG3062|consen   59 LRGKLRSAVDRSLSKGDIVIVD-SLNYIKGFRY-ELYCEAKAARTTYCVVHTAVPQ-ELCREWN  119 (281)
T ss_pred             HHHHHHHHHHhhcccCcEEEEe-ccccccccee-eeeeehhccceeEEEEEecCCH-HHHHHhc
Confidence            3444567888888999999999 5555544442 222         1568887763 4444454

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=90.06  E-value=0.16  Score=39.22  Aligned_cols=15  Identities=7%  Similarity=-0.071  Sum_probs=13.9

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .+.++|+||||||||
T Consensus        15 ge~v~I~GpSGsGKS   29 (107)
T cd00820          15 KVGVLITGDSGIGKT   29 (107)
T ss_pred             CEEEEEEcCCCCCHH
Confidence            568999999999999

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>CHL00181 cbbX CbbX; Provisional

Probab=89.83  E-value=3.5  Score=36.87  Aligned_cols=15  Identities=7%  Similarity=-0.104  Sum_probs=13.1

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...++|.||+|+|||
T Consensus        59 ~~~ill~G~pGtGKT   73 (287)
T CHL00181         59 GLHMSFTGSPGTGKT   73 (287)
T ss_pred             CceEEEECCCCCCHH
Confidence            346899999999999

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=89.80  E-value=0.17  Score=44.08  Aligned_cols=15  Identities=0%  Similarity=-0.148  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +..++++|+||+|||
T Consensus       120 ~~~~~~~G~sgvGKS  134 (245)
T TIGR00157       120 NRISVFAGQSGVGKS  134 (245)
T ss_pred             CCEEEEECCCCCCHH
Confidence            358899999999999

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=89.79  E-value=1.8  Score=40.94  Aligned_cols=65  Identities=29%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             cHHHHHHHHHc-------CCeEEEEccHHHHHHHHhhc---cCC-----eEEEEec----CCHHHHHHHhc--------c
Q psy10228        113 SVASVRDVAEK-------GKHCILDVSGNAIKRLQVAS---LYP-----VAIFIKP----KSVESIMEMNK--------R  165 (225)
Q Consensus       113 s~~sV~~v~~~-------gk~~ildv~~~gvk~L~~~~---~~P-----i~IFI~p----ps~~~L~~L~~--------R  165 (225)
                      .+..|++++++       |+-.||-||-  |.++.+.+   +-|     .+|||-.    ||.+.--.|+.        .
T Consensus        85 gvkdlr~i~e~a~~~~~~gr~tiLflDE--IHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~  162 (436)
T COG2256          85 GVKDLREIIEEARKNRLLGRRTILFLDE--IHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKP  162 (436)
T ss_pred             cHHHHHHHHHHHHHHHhcCCceEEEEeh--hhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence            35556666544       3444555543  44555442   334     5688865    44432222333        3


Q ss_pred             CCHHHHHHHHHHHH
Q psy10228        166 MTEEQAKKMYDRSM  179 (225)
Q Consensus       166 ~seeei~~rl~~a~  179 (225)
                      ++.++|.+.+.+|.
T Consensus       163 L~~~di~~~l~ra~  176 (436)
T COG2256         163 LSSEDIKKLLKRAL  176 (436)
T ss_pred             CCHHHHHHHHHHHH
Confidence            47889998898874

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=89.73  E-value=0.61  Score=38.54  Aligned_cols=13  Identities=8%  Similarity=-0.100  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|.|+|+||||||
T Consensus         1 ii~i~G~sgsGKt   13 (179)
T cd02028           1 VVGIAGPSGSGKT   13 (179)
T ss_pred             CEEEECCCCCCHH
Confidence            4789999999999

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=89.61  E-value=0.65  Score=38.31  Aligned_cols=13  Identities=0%  Similarity=-0.056  Sum_probs=12.2

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+|++|||||
T Consensus         3 ~ili~G~~~sGKS   15 (170)
T PRK05800          3 LILVTGGARSGKS   15 (170)
T ss_pred             EEEEECCCCccHH
Confidence            5899999999999

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=89.56  E-value=0.12  Score=38.93  Aligned_cols=12  Identities=0%  Similarity=-0.108  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|++|+|||
T Consensus         2 V~iiG~~~~GKS   13 (116)
T PF01926_consen    2 VAIIGRPNVGKS   13 (116)
T ss_dssp             EEEEESTTSSHH
T ss_pred             EEEECCCCCCHH
Confidence            789999999999

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=89.47  E-value=5.6  Score=33.82  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             HcCCeEEEE-ccHHHHHHHHhhccCC----eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHh-h---------C
Q psy10228        122 EKGKHCILD-VSGNAIKRLQVASLYP----VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE-F---------G  186 (225)
Q Consensus       122 ~~gk~~ild-v~~~gvk~L~~~~~~P----i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~-~---------~  186 (225)
                      +.|-++|.- |+|-...+-+.+.+.+    +-|||..| +++.+   +|.    -+-.+.+|..-|+. |         .
T Consensus        93 daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce---~RD----pKGLYkKAr~GeI~~fTGid~pYE~P  164 (197)
T COG0529          93 DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCE---RRD----PKGLYKKARAGEIKNFTGIDSPYEAP  164 (197)
T ss_pred             HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHH---hcC----chHHHHHHHcCCCCCCcCCCCCCCCC
Confidence            457666653 6764432222233333    56899887 45543   221    12234455333331 1         1


Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ...|.+|..+  ++++.+.+|...+...
T Consensus       165 ~~Pel~l~t~~~~vee~v~~i~~~l~~~  192 (197)
T COG0529         165 ENPELHLDTDRNSVEECVEQILDLLKER  192 (197)
T ss_pred             CCCeeEeccccCCHHHHHHHHHHHHHhc
Confidence            2345555533  6899999998888654

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=89.45  E-value=2.9  Score=38.50  Aligned_cols=13  Identities=15%  Similarity=0.204  Sum_probs=11.8

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +.+|+|++|||||
T Consensus         1 ~~~l~Gl~GaGKS   13 (340)
T TIGR03575         1 LCVLCGLPAAGKS   13 (340)
T ss_pred             CeEEECCCCCCHH
Confidence            3689999999999

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=89.23  E-value=5.6  Score=36.34  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             CCCCccEEEEccCCCCCC---------------------CcccCCCCCCCCCCcceEEecCHHHHHHhh-hCCcEEEEEE
Q psy10228         47 GSDQEPFMLCYTQDDPTT---------------------EDTTRARREYEVDGRDYHFVSSREQMEKDI-QNHLFIEAGQ  104 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~---------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i-~~~~FiE~~~  104 (225)
                      +.....|=|+|++|+|||                     ---|.|.--|-+=|       ++--|+..- +.|-|+----
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG-------DRiRM~~~~~~~~vFiRs~~  120 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG-------DRIRMQRLAVDPGVFIRSSP  120 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc-------cHhhHHhhccCCCeEEeecC
Confidence            344456789999999999                     11223322233333       567787776 7889998888


Q ss_pred             eCCcceeecHHHHHHHH---HcCCeEEE-EccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHH
Q psy10228        105 YNDNLYGTSVASVRDVA---EKGKHCIL-DVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMK  180 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~---~~gk~~il-dv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k  180 (225)
                      -.|.+=|.|..+-.-+.   +.|.++|+ +.-+-|--.......--+++++..|..-           ++++     +  
T Consensus       121 srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~G-----------D~~Q-----~--  182 (323)
T COG1703         121 SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAG-----------DDLQ-----G--  182 (323)
T ss_pred             CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCC-----------cHHH-----H--
Confidence            88989999877544322   44776554 3333231122222333477888877531           1221     1  


Q ss_pred             HHHhhCCCCcEEEECC-C---HHHHHHHHHHHHHhc---cCCceeeeC
Q psy10228        181 MEQEFGEFFTAVVQGD-M---PEDIYQKVKEVIQEQ---SGPSIWVPS  221 (225)
Q Consensus       181 ~E~~~~~~fd~vI~Nd-d---leea~~~lk~iI~~~---~~~~~WVp~  221 (225)
                      +.....+.-|.+++|- |   .+.++..|...+...   ..++-|-|.
T Consensus       183 iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp  230 (323)
T COG1703         183 IKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP  230 (323)
T ss_pred             HHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence            1122234557777774 3   556677776666655   567777663

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=88.94  E-value=0.22  Score=43.34  Aligned_cols=33  Identities=9%  Similarity=0.139  Sum_probs=24.5

Q ss_pred             cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEe
Q psy10228         52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFV   84 (225)
Q Consensus        52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV   84 (225)
                      +++|+||+|+|||                          +.+|-.|-+.|..|..-.|.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL   61 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYL   61 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeee
Confidence            6899999999999                          66777778889999988887

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=88.90  E-value=0.67  Score=40.15  Aligned_cols=14  Identities=7%  Similarity=-0.183  Sum_probs=12.4

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .+|-|+|+||||||
T Consensus         9 iiIgIaG~SgSGKT   22 (218)
T COG0572           9 IIIGIAGGSGSGKT   22 (218)
T ss_pred             EEEEEeCCCCCCHH
Confidence            46779999999998

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=88.83  E-value=1.9  Score=40.94  Aligned_cols=106  Identities=8%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             ccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhh----hC-------------CcEEEEEEeCC
Q psy10228         51 EPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDI----QN-------------HLFIEAGQYND  107 (225)
Q Consensus        51 ~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~-------------~~FiE~~~~~g  107 (225)
                      .+++|.||+|+|||      .+.-+.    ...|....|+ +-++|...+    ..             -..|-.-+.+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi-~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~  205 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYI-TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF  205 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEE-EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence            47999999999999      111110    0123455677 555544332    11             22332222221


Q ss_pred             --cceee---cHHHHHHHHHcCCeEEEE--ccHHHHHHH----HhhccCCeEEEEecCCHHHHHH
Q psy10228        108 --NLYGT---SVASVRDVAEKGKHCILD--VSGNAIKRL----QVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       108 --n~YGT---s~~sV~~v~~~gk~~ild--v~~~gvk~L----~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                        ...++   -...+....+.|+.+|+-  ..|..+..+    ..+-....++-|.||+.+.+..
T Consensus       206 l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~  270 (440)
T PRK14088        206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK  270 (440)
T ss_pred             hcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence              01111   112234455667777764  345444333    2221224678899999877665

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=88.67  E-value=0.17  Score=42.63  Aligned_cols=14  Identities=14%  Similarity=0.107  Sum_probs=11.3

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-|+|+||+|||||
T Consensus         4 ~~vlL~Gps~SGKT   17 (181)
T PF09439_consen    4 PTVLLVGPSGSGKT   17 (181)
T ss_dssp             -EEEEE-STTSSHH
T ss_pred             ceEEEEcCCCCCHH
Confidence            46899999999999

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=88.64  E-value=5.2  Score=39.75  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=12.5

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-++++||.|+||+
T Consensus        39 hA~Lf~GP~GvGKT   52 (605)
T PRK05896         39 HAYIFSGPRGIGKT   52 (605)
T ss_pred             ceEEEECCCCCCHH
Confidence            35899999999999

>PRK12289 GTPase RsgA; Reviewed

Probab=88.54  E-value=0.21  Score=46.08  Aligned_cols=14  Identities=0%  Similarity=-0.145  Sum_probs=12.7

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..++|+|+||+|||
T Consensus       173 ki~v~iG~SgVGKS  186 (352)
T PRK12289        173 KITVVAGPSGVGKS  186 (352)
T ss_pred             ceEEEEeCCCCCHH
Confidence            46899999999998

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=88.35  E-value=3.8  Score=40.25  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      .++++||.|+||+          -|...  ..++--|.  +      ..-..|..|....+-+++|.. .+.++.|+++.
T Consensus        40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~--~~~~~c~~--c------~~c~~i~~g~~~d~~eid~~s-~~~v~~ir~l~  108 (576)
T PRK14965         40 AFLFTGARGVGKTSTARILAKALNCEQG--LTAEPCNV--C------PPCVEITEGRSVDVFEIDGAS-NTGVDDIRELR  108 (576)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhcCCCC--CCCCCCCc--c------HHHHHHhcCCCCCeeeeeccC-ccCHHHHHHHH
Confidence            5789999999998          22111  11111121  1      111234445555555555421 24566777665


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-e--EEEEecCCHHHHHH-Hhcc--------CCHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-V--AIFIKPKSVESIME-MNKR--------MTEEQAKKMY  175 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i--~IFI~pps~~~L~~-L~~R--------~seeei~~rl  175 (225)
                      +.         .|++|+|    ++..+...|.+ .+-.| .  .||+. .+.+.|-. ++.|        ++.+++..++
T Consensus       109 ~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t-~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L  187 (576)
T PRK14965        109 ENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT-TEPHKVPITILSRCQRFDFRRIPLQKIVDRL  187 (576)
T ss_pred             HHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe-CChhhhhHHHHHhhhhhhcCCCCHHHHHHHH
Confidence            42         4677776    24445544543 23333 3  44444 33444443 5543        3567777666


Q ss_pred             HHH
Q psy10228        176 DRS  178 (225)
Q Consensus       176 ~~a  178 (225)
                      ...
T Consensus       188 ~~i  190 (576)
T PRK14965        188 RYI  190 (576)
T ss_pred             HHH
Confidence            553

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=88.28  E-value=4.6  Score=41.93  Aligned_cols=13  Identities=15%  Similarity=0.204  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|+||.|+||+
T Consensus        40 AyLFtGPpGtGKT   52 (944)
T PRK14949         40 AYLFTGTRGVGKT   52 (944)
T ss_pred             EEEEECCCCCCHH
Confidence            4689999999999

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=88.21  E-value=3.6  Score=41.14  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      -++++||.|+||+          -|.+..  .++--|.      .  ..-..|.+|.|..+-++++.. .+.++.|++++
T Consensus        40 AyLf~Gp~GvGKTTlAr~lAk~L~c~~~~--~~~pCg~------C--~~C~~i~~g~~~D~ieidaas-~~~VddiR~li  108 (647)
T PRK07994         40 AYLFSGTRGVGKTTIARLLAKGLNCETGI--TATPCGE------C--DNCREIEQGRFVDLIEIDAAS-RTKVEDTRELL  108 (647)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhccCC--CCCCCCC------C--HHHHHHHcCCCCCceeecccc-cCCHHHHHHHH
Confidence            3789999999998          221110  0001111      0  222345566666655555432 24567777765


Q ss_pred             Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHHH-Hhcc--------CCHHHHHHHHH
Q psy10228        122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIME-MNKR--------MTEEQAKKMYD  176 (225)
Q Consensus       122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~~-L~~R--------~seeei~~rl~  176 (225)
                      +.         .|++|+|    ++..+...|-+ .+-.| .++||.. .+...|.. ++.|        ++.+++..+|.
T Consensus       109 ~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~  188 (647)
T PRK07994        109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLE  188 (647)
T ss_pred             HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHH
Confidence            33         3577776    45555555533 33333 3333322 22223322 3322        35667766665


Q ss_pred             HH
Q psy10228        177 RS  178 (225)
Q Consensus       177 ~a  178 (225)
                      +.
T Consensus       189 ~i  190 (647)
T PRK07994        189 HI  190 (647)
T ss_pred             HH
Confidence            53

>PRK10867 signal recognition particle protein; Provisional

Probab=88.18  E-value=7.7  Score=36.93  Aligned_cols=37  Identities=8%  Similarity=0.016  Sum_probs=21.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228        188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP  224 (225)
Q Consensus       188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~  224 (225)
                      ..+.+|.+- |-+.-...+..+.....-|..++...++
T Consensus       241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~  278 (433)
T PRK10867        241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEK  278 (433)
T ss_pred             CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCc
Confidence            356666654 4334445566666666666666666654

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=87.93  E-value=5.5  Score=39.45  Aligned_cols=13  Identities=31%  Similarity=0.278  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -++|+||+|+||+
T Consensus        48 a~L~~Gp~GvGKT   60 (598)
T PRK09111         48 AFMLTGVRGVGKT   60 (598)
T ss_pred             eEEEECCCCCCHH
Confidence            5899999999999

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=87.83  E-value=2  Score=42.69  Aligned_cols=105  Identities=13%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             ccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhh----hCCc------------EEEEEEeCCc
Q psy10228         51 EPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDI----QNHL------------FIEAGQYNDN  108 (225)
Q Consensus        51 ~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~~~------------FiE~~~~~gn  108 (225)
                      .+++|.|++|+|||      .+.....    ..|..-.|+ +-++|...+    .++.            .|-.-.++ .
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yi-taeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq-~  388 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYV-SSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQ-F  388 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEe-eHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhc-c
Confidence            47999999999999      3332211    124455677 565554222    2221            12111111 0


Q ss_pred             ceee------cHHHHHHHHHcCCeEEEEc--cHHHH----HHHHhhccCCeEEEEecCCHHHHHH
Q psy10228        109 LYGT------SVASVRDVAEKGKHCILDV--SGNAI----KRLQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       109 ~YGT------s~~sV~~v~~~gk~~ildv--~~~gv----k~L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      .-|.      -..-+....+.|+.+|+-.  .+..+    .+|..+-....++-|.+|+.+....
T Consensus       389 l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a  453 (617)
T PRK14086        389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA  453 (617)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence            1121      1233455566677777643  33333    3344433345889999999877665

>KOG1970|consensus

Probab=87.79  E-value=0.32  Score=47.57  Aligned_cols=58  Identities=10%  Similarity=0.022  Sum_probs=33.7

Q ss_pred             CccEEEEccCCCCCC-------------------CcccCCC--CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228         50 QEPFMLCYTQDDPTT-------------------EDTTRAR--REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN  108 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-------------------s~TTRp~--R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn  108 (225)
                      .++.+|+|||||||+                   |.-++-|  -..|.-|....|++--+.|+.      |+|...-.|.
T Consensus       110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fes------Fler~~kyg~  183 (634)
T KOG1970|consen  110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFES------FLLRATKYGS  183 (634)
T ss_pred             ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHH------HHHHHHhhch
Confidence            358999999999999                   4445544  223444444333323445553      6666544555


Q ss_pred             ceeec
Q psy10228        109 LYGTS  113 (225)
Q Consensus       109 ~YGTs  113 (225)
                      +|+..
T Consensus       184 l~~~g  188 (634)
T KOG1970|consen  184 LQMSG  188 (634)
T ss_pred             hhhcc
Confidence            66544

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=87.76  E-value=4.6  Score=40.17  Aligned_cols=13  Identities=8%  Similarity=0.217  Sum_probs=11.8

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -+++.||.|+||+
T Consensus        40 a~Lf~Gp~G~GKt   52 (620)
T PRK14948         40 AYLFTGPRGTGKT   52 (620)
T ss_pred             eEEEECCCCCChH
Confidence            4689999999999

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=87.68  E-value=0.18  Score=42.78  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=22.3

Q ss_pred             EEEEccCCCCCC-------------------CcccCCC-CCCCCCCcceEEecC
Q psy10228         53 FMLCYTQDDPTT-------------------EDTTRAR-REYEVDGRDYHFVSS   86 (225)
Q Consensus        53 ivl~GpsgsGK~-------------------s~TTRp~-R~~E~dG~dY~FV~s   86 (225)
                      |+|+|++|||||                   ++|+.+- ..++++|+...+|+|
T Consensus         3 IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDT   56 (212)
T PF04548_consen    3 ILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDT   56 (212)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE-
T ss_pred             EEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeC
Confidence            899999999999                   3444443 234677877777744

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=87.61  E-value=0.21  Score=37.56  Aligned_cols=12  Identities=8%  Similarity=-0.075  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|++|||||
T Consensus         1 I~i~G~~GsGKt   12 (129)
T PF13238_consen    1 IGISGIPGSGKT   12 (129)
T ss_dssp             EEEEESTTSSHH
T ss_pred             CEEECCCCCCHH
Confidence            789999999999

...

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=87.52  E-value=0.26  Score=36.36  Aligned_cols=14  Identities=14%  Similarity=0.143  Sum_probs=12.8

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..++|+||+|+|||
T Consensus         3 ~~~~l~G~~G~GKT   16 (148)
T smart00382        3 EVILIVGPPGSGKT   16 (148)
T ss_pred             CEEEEECCCCCcHH
Confidence            46899999999999

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=87.37  E-value=5.9  Score=36.75  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             ccEEEEccCCCCCCCcccCCC----CCCCCCCcceEEecCHHHHHHhh----------------hCCcEEEEEEeCCcce
Q psy10228         51 EPFMLCYTQDDPTTEDTTRAR----REYEVDGRDYHFVSSREQMEKDI----------------QNHLFIEAGQYNDNLY  110 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~----R~~E~dG~dY~FV~s~eef~~~i----------------~~~~FiE~~~~~gn~Y  110 (225)
                      .+++|.||+|+|||. -.+.-    .. ...|....|+ +-++|...+                ..-+.|-.-.++- .-
T Consensus       137 n~l~l~G~~G~GKTh-L~~ai~~~l~~-~~~~~~v~yi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~-l~  212 (405)
T TIGR00362       137 NPLFIYGGVGLGKTH-LLHAIGNEILE-NNPNAKVVYV-SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQF-LA  212 (405)
T ss_pred             CeEEEECCCCCcHHH-HHHHHHHHHHH-hCCCCcEEEE-EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhh-hc
Confidence            478999999999990 00000    00 0124556677 555544322                2222332222221 11


Q ss_pred             ee------cHHHHHHHHHcCCeEEEEc--cHHHHHH----HHhhccCCeEEEEecCCHHHHHH
Q psy10228        111 GT------SVASVRDVAEKGKHCILDV--SGNAIKR----LQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       111 GT------s~~sV~~v~~~gk~~ildv--~~~gvk~----L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      |.      -...+....+.|+.+|+-.  .+..+..    |..+-.....|.|.||+.+.+..
T Consensus       213 ~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~  275 (405)
T TIGR00362       213 GKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA  275 (405)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence            11      1122344556777666643  3444432    22211123679999999877665

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=87.33  E-value=4.7  Score=38.94  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             CeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHHH-Hhcc--------CCHHHHHHHHHHHHHHHH-hhC-
Q psy10228        125 KHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIME-MNKR--------MTEEQAKKMYDRSMKMEQ-EFG-  186 (225)
Q Consensus       125 k~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~~-L~~R--------~seeei~~rl~~a~k~E~-~~~-  186 (225)
                      +++|+|    ++..+...|-. .+-.| .+|||-. .....|.. ++.|        ++.+++.+++.+..+.|- .+. 
T Consensus       123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~  202 (484)
T PRK14956        123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQ  202 (484)
T ss_pred             EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence            466666    34455544433 33333 4556543 23344432 4433        467788777776543221 110 


Q ss_pred             CCCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228        187 EFFTAVV--QGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       187 ~~fd~vI--~Nddleea~~~lk~iI~  210 (225)
                      .-.+.|+  .+.++-+|++-|.+++.
T Consensus       203 eAL~~Ia~~S~Gd~RdAL~lLeq~i~  228 (484)
T PRK14956        203 EGLFWIAKKGDGSVRDMLSFMEQAIV  228 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            0112222  23467777777766554

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=87.08  E-value=2.9  Score=37.93  Aligned_cols=66  Identities=21%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             ecHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC--eEEEEecCCHHHHHH-HhccC--------
Q psy10228        112 TSVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP--VAIFIKPKSVESIME-MNKRM--------  166 (225)
Q Consensus       112 Ts~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P--i~IFI~pps~~~L~~-L~~R~--------  166 (225)
                      ++++.|+++.         ...|++|++    ++..+..+|-+ -+-.|  +.|++.. +.+.|-. ++.|.        
T Consensus       104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~-~~~~Ll~TI~SRcq~i~f~~l  182 (314)
T PRK07399        104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP-SPESLLPTIVSRCQIIPFYRL  182 (314)
T ss_pred             CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC-ChHhCcHHHHhhceEEecCCC
Confidence            5677777774         235677776    34555544433 33344  4455544 4455544 66554        


Q ss_pred             CHHHHHHHHHHH
Q psy10228        167 TEEQAKKMYDRS  178 (225)
Q Consensus       167 seeei~~rl~~a  178 (225)
                      +++++.+.+.+.
T Consensus       183 ~~~~~~~~L~~~  194 (314)
T PRK07399        183 SDEQLEQVLKRL  194 (314)
T ss_pred             CHHHHHHHHHHh
Confidence            577777666654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=86.93  E-value=0.28  Score=34.12  Aligned_cols=13  Identities=0%  Similarity=-0.107  Sum_probs=11.7

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+|++||||+
T Consensus         1 ~i~i~G~~gsGKs   13 (69)
T cd02019           1 IIAITGGSGSGKS   13 (69)
T ss_pred             CEEEECCCCCCHH
Confidence            3789999999998

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=86.91  E-value=0.3  Score=47.09  Aligned_cols=18  Identities=17%  Similarity=0.301  Sum_probs=15.5

Q ss_pred             CCCCccEEEEccCCCCCC
Q psy10228         47 GSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~   64 (225)
                      ...++.++|+||||||||
T Consensus        29 i~~GEiv~L~G~SGsGKS   46 (504)
T TIGR03238        29 LPSSSLLFLCGSSGDGKS   46 (504)
T ss_pred             ecCCCEEEEECCCCCCHH
Confidence            344679999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK05428 HPr kinase/phosphorylase; Provisional

Probab=86.64  E-value=0.48  Score=43.08  Aligned_cols=65  Identities=12%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-ceeecHHHHHHHHHcCCeEEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYGTSVASVRDVAEKGKHCIL  129 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YGTs~~sV~~v~~~gk~~il  129 (225)
                      .=++|.|+||+|||..+..-...|      |-|| +          ++-++....+++ ++|++.+.++..++---.-|+
T Consensus       147 ~GvLi~G~SG~GKSelALeLi~rG------h~LV-a----------DD~v~i~~~~~~~L~g~~p~~l~~~lEvRG~GIi  209 (308)
T PRK05428        147 IGVLITGESGIGKSETALELIKRG------HRLV-A----------DDAVDIKRIGPDTLEGRCPELLQHLLEIRGLGII  209 (308)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC------CceE-e----------cCeEEEEEecCCEEEeeCchhhcchhhhcCCcEE
Confidence            457899999999994333222111      3477 3          356777777777 899998888888877556666


Q ss_pred             Ecc
Q psy10228        130 DVS  132 (225)
Q Consensus       130 dv~  132 (225)
                      |+.
T Consensus       210 ~v~  212 (308)
T PRK05428        210 DVR  212 (308)
T ss_pred             ehh
Confidence            664

>PRK05439 pantothenate kinase; Provisional

Probab=86.37  E-value=0.64  Score=42.32  Aligned_cols=15  Identities=0%  Similarity=-0.288  Sum_probs=12.9

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .-+|.|+|++|||||
T Consensus        86 ~~iIgIaG~~gsGKS  100 (311)
T PRK05439         86 PFIIGIAGSVAVGKS  100 (311)
T ss_pred             CEEEEEECCCCCCHH
Confidence            346779999999999

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=86.33  E-value=0.39  Score=35.91  Aligned_cols=15  Identities=13%  Similarity=0.122  Sum_probs=13.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...++|.||+|+|||
T Consensus        19 ~~~v~i~G~~G~GKT   33 (151)
T cd00009          19 PKNLLLYGPPGTGKT   33 (151)
T ss_pred             CCeEEEECCCCCCHH
Confidence            468999999999999

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=86.31  E-value=0.36  Score=42.57  Aligned_cols=18  Identities=6%  Similarity=-0.095  Sum_probs=16.1

Q ss_pred             CCCCccEEEEccCCCCCC
Q psy10228         47 GSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~   64 (225)
                      -+.+++++|+||||||||
T Consensus        27 I~~GE~VaiIG~SGaGKS   44 (258)
T COG3638          27 INQGEMVAIIGPSGAGKS   44 (258)
T ss_pred             eCCCcEEEEECCCCCcHH
Confidence            456789999999999999

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=86.16  E-value=0.41  Score=51.88  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             ccCCCCCCCC--CCcceEEecCHHHHHHhh---hCCcEEEEEEeC-Cccee---ecHHHHHHHHHc
Q psy10228         67 TTRARREYEV--DGRDYHFVSSREQMEKDI---QNHLFIEAGQYN-DNLYG---TSVASVRDVAEK  123 (225)
Q Consensus        67 TTRp~R~~E~--dG~dY~FV~s~eef~~~i---~~~~FiE~~~~~-gn~YG---Ts~~sV~~v~~~  123 (225)
                      +|+.|-.|++  ||+|..=+ +.+.+.+.|   .+.-++-.+... +-.||   .+.++|.++++.
T Consensus      1270 ~~~~~~~G~I~idG~di~~~-~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~ 1334 (1466)
T PTZ00265       1270 STVFKNSGKILLDGVDICDY-NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKF 1334 (1466)
T ss_pred             cccCCCCCeEEECCEEHHhC-CHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence            4566677776  88886666 666666554   333444333332 23466   466777777654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=86.15  E-value=0.31  Score=40.91  Aligned_cols=13  Identities=0%  Similarity=-0.033  Sum_probs=12.3

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+||+|||||
T Consensus         3 lilI~GptGSGKT   15 (198)
T cd01131           3 LVLVTGPTGSGKS   15 (198)
T ss_pred             EEEEECCCCCCHH
Confidence            6899999999999

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=86.10  E-value=0.27  Score=37.34  Aligned_cols=15  Identities=13%  Similarity=0.102  Sum_probs=10.8

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +..++|+||+|+|||
T Consensus         4 ~~~~~i~G~~G~GKT   18 (131)
T PF13401_consen    4 QRILVISGPPGSGKT   18 (131)
T ss_dssp             ---EEEEE-TTSSHH
T ss_pred             CcccEEEcCCCCCHH
Confidence            457999999999999

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=85.89  E-value=0.45  Score=43.55  Aligned_cols=19  Identities=16%  Similarity=-0.013  Sum_probs=16.5

Q ss_pred             CCCCCccEEEEccCCCCCC
Q psy10228         46 DGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        46 ~~~~~~~ivl~GpsgsGK~   64 (225)
                      +-.+++++.|.||||||||
T Consensus        24 ~i~~Ge~vaLlGpSGaGKs   42 (345)
T COG1118          24 DIKSGELVALLGPSGAGKS   42 (345)
T ss_pred             eecCCcEEEEECCCCCcHH
Confidence            3446789999999999999

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=85.72  E-value=3.7  Score=38.80  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             HHHHHcCCeEEEEc--cHHHHH----HHHhhccCCeEEEEecCCHHHHHH
Q psy10228        118 RDVAEKGKHCILDV--SGNAIK----RLQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus       118 ~~v~~~gk~~ildv--~~~gvk----~L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      ....+.|+.+|+-.  .+..+.    +|..+-....++.|.||+.+.+..
T Consensus       238 n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~  287 (450)
T PRK00149        238 NALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA  287 (450)
T ss_pred             HHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence            34556777766643  333332    233221123678899999877765

>PRK12288 GTPase RsgA; Reviewed

Probab=85.59  E-value=0.35  Score=44.54  Aligned_cols=14  Identities=0%  Similarity=-0.166  Sum_probs=12.8

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..++|+|+||+|||
T Consensus       206 ki~~~vG~sgVGKS  219 (347)
T PRK12288        206 RISIFVGQSGVGKS  219 (347)
T ss_pred             CCEEEECCCCCCHH
Confidence            46899999999999

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=85.56  E-value=6.4  Score=37.81  Aligned_cols=13  Identities=8%  Similarity=0.235  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++++||+|+|||
T Consensus        38 ~~Lf~GPpGtGKT   50 (472)
T PRK14962         38 AYIFAGPRGTGKT   50 (472)
T ss_pred             EEEEECCCCCCHH
Confidence            3799999999999

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=85.46  E-value=0.32  Score=36.65  Aligned_cols=12  Identities=17%  Similarity=0.099  Sum_probs=11.4

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|.||+|+|||
T Consensus         1 ill~G~~G~GKT   12 (132)
T PF00004_consen    1 ILLHGPPGTGKT   12 (132)
T ss_dssp             EEEESSTTSSHH
T ss_pred             CEEECcCCCCee
Confidence            689999999999

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=85.34  E-value=9.4  Score=37.37  Aligned_cols=13  Identities=8%  Similarity=0.209  Sum_probs=11.8

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++++||.|+||+
T Consensus        38 ayLf~Gp~G~GKT   50 (535)
T PRK08451         38 AYLFSGLRGSGKT   50 (535)
T ss_pred             eEEEECCCCCcHH
Confidence            4689999999998

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=85.30  E-value=0.37  Score=38.43  Aligned_cols=27  Identities=11%  Similarity=0.028  Sum_probs=20.9

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEV   76 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~   76 (225)
                      ...++++|.+++||+                 ++|||.+.....
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~  143 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL  143 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe
Confidence            456899999999999                 678887755433

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=85.28  E-value=0.38  Score=33.51  Aligned_cols=13  Identities=0%  Similarity=-0.036  Sum_probs=12.3

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      ..+|+||+|||||
T Consensus        25 ~tli~G~nGsGKS   37 (62)
T PF13555_consen   25 VTLITGPNGSGKS   37 (62)
T ss_pred             EEEEECCCCCCHH
Confidence            6899999999999

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=85.24  E-value=8.5  Score=37.84  Aligned_cols=13  Identities=8%  Similarity=0.151  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .+++.||.|.||+
T Consensus        40 ayLf~Gp~G~GKT   52 (563)
T PRK06647         40 AYIFSGPRGVGKT   52 (563)
T ss_pred             EEEEECCCCCCHH
Confidence            5799999999998

>KOG3877|consensus

Probab=85.17  E-value=2.1  Score=38.92  Aligned_cols=58  Identities=12%  Similarity=0.385  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCCeEEEEccHHH----HHHHH-----------------h---hcc-CC-eEEEEecCCHHHHHHHhccCC
Q psy10228        114 VASVRDVAEKGKHCILDVSGNA----IKRLQ-----------------V---ASL-YP-VAIFIKPKSVESIMEMNKRMT  167 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~~~g----vk~L~-----------------~---~~~-~P-i~IFI~pps~~~L~~L~~R~s  167 (225)
                      .++++-++..|+-++|+-++-.    +.++.                 .   .++ .| .+|||..|--++++++.+|+.
T Consensus       161 ~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~  240 (393)
T KOG3877|consen  161 LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGN  240 (393)
T ss_pred             HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCC
Confidence            5678888999999999876521    11111                 1   122 34 899999998888888999986


Q ss_pred             HHHH
Q psy10228        168 EEQA  171 (225)
Q Consensus       168 eeei  171 (225)
                      ..++
T Consensus       241 ~~Ei  244 (393)
T KOG3877|consen  241 TDEI  244 (393)
T ss_pred             Ccce
Confidence            4444

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=84.71  E-value=11  Score=37.00  Aligned_cols=13  Identities=8%  Similarity=0.143  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|+||+|+||+
T Consensus        40 a~Lf~Gp~G~GKT   52 (585)
T PRK14950         40 AYLFTGPRGVGKT   52 (585)
T ss_pred             EEEEECCCCCCHH
Confidence            4799999999999

>cd04155 Arl3 Arl3 subfamily

Probab=84.57  E-value=0.81  Score=36.27  Aligned_cols=14  Identities=7%  Similarity=0.055  Sum_probs=12.6

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-++|+||+|+|||
T Consensus        15 ~~v~i~G~~g~GKS   28 (173)
T cd04155          15 PRILILGLDNAGKT   28 (173)
T ss_pred             cEEEEEccCCCCHH
Confidence            34899999999999

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=84.55  E-value=13  Score=30.19  Aligned_cols=53  Identities=25%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             HHHHHHHHcCCeEEEEcc---------------HHHHHHHHhhcc--CC-eEEEEecCCHHHHHHHhccCC
Q psy10228        115 ASVRDVAEKGKHCILDVS---------------GNAIKRLQVASL--YP-VAIFIKPKSVESIMEMNKRMT  167 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~~~--~P-i~IFI~pps~~~L~~L~~R~s  167 (225)
                      ..|...+++|.++|+|--               ...+..+...-.  .| ++||+..+-...++++..|..
T Consensus        71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~  141 (186)
T PF02223_consen   71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE  141 (186)
T ss_dssp             HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred             HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence            456677888999999841               223333332222  66 778888764444555665553

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=84.17  E-value=0.52  Score=39.38  Aligned_cols=15  Identities=13%  Similarity=-0.091  Sum_probs=13.4

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ++++-|+|||||||+
T Consensus        28 GeivtlMGPSGcGKS   42 (213)
T COG4136          28 GEIVTLMGPSGCGKS   42 (213)
T ss_pred             CcEEEEECCCCccHH
Confidence            467889999999999

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=84.16  E-value=0.4  Score=37.20  Aligned_cols=13  Identities=23%  Similarity=0.296  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +++|.||+|+|||
T Consensus         1 ~vlL~G~~G~GKt   13 (139)
T PF07728_consen    1 PVLLVGPPGTGKT   13 (139)
T ss_dssp             EEEEEESSSSSHH
T ss_pred             CEEEECCCCCCHH
Confidence            4899999999999

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=84.12  E-value=8.9  Score=36.54  Aligned_cols=13  Identities=8%  Similarity=0.215  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -+++.||+|+||+
T Consensus        41 a~Lf~Gp~G~GKt   53 (451)
T PRK06305         41 AYLFSGIRGTGKT   53 (451)
T ss_pred             EEEEEcCCCCCHH
Confidence            5789999999998

>PF05729 NACHT: NACHT domain

Probab=84.08  E-value=0.55  Score=36.70  Aligned_cols=14  Identities=0%  Similarity=-0.026  Sum_probs=13.0

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ++++|+|++|+|||
T Consensus         1 r~l~I~G~~G~GKS   14 (166)
T PF05729_consen    1 RVLWISGEPGSGKS   14 (166)
T ss_pred             CEEEEECCCCCChH
Confidence            57899999999999

>cd01855 YqeH YqeH

Probab=84.07  E-value=0.47  Score=39.05  Aligned_cols=14  Identities=0%  Similarity=-0.090  Sum_probs=12.9

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..++++|.+|+|||
T Consensus       128 ~~~~~~G~~nvGKS  141 (190)
T cd01855         128 GDVYVVGATNVGKS  141 (190)
T ss_pred             CcEEEEcCCCCCHH
Confidence            46899999999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=84.07  E-value=7.3  Score=37.58  Aligned_cols=13  Identities=8%  Similarity=0.020  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+|++|||||
T Consensus         2 ~I~l~G~~GsGKS   14 (488)
T PRK13951          2 RIFLVGMMGSGKS   14 (488)
T ss_pred             eEEEECCCCCCHH
Confidence            3899999999999

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=83.97  E-value=8  Score=37.89  Aligned_cols=14  Identities=7%  Similarity=0.225  Sum_probs=12.5

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..++++||.|.||+
T Consensus        39 hayLf~Gp~GtGKT   52 (559)
T PRK05563         39 HAYLFSGPRGTGKT   52 (559)
T ss_pred             eEEEEECCCCCCHH
Confidence            46789999999998

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=83.93  E-value=8.5  Score=31.47  Aligned_cols=13  Identities=0%  Similarity=0.107  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|.||+|.||+
T Consensus        16 ~~L~~G~~G~gkt   28 (188)
T TIGR00678        16 AYLFAGPEGVGKE   28 (188)
T ss_pred             EEEEECCCCCCHH
Confidence            5899999999998

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=83.90  E-value=0.49  Score=40.69  Aligned_cols=15  Identities=13%  Similarity=0.005  Sum_probs=13.9

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ++++.|+||||+|||
T Consensus        28 Gef~fl~GpSGAGKS   42 (223)
T COG2884          28 GEFVFLTGPSGAGKS   42 (223)
T ss_pred             ceEEEEECCCCCCHH
Confidence            568999999999999

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=83.81  E-value=0.5  Score=39.23  Aligned_cols=15  Identities=0%  Similarity=-0.079  Sum_probs=13.9

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .+.++|+||||||||
T Consensus        21 G~~~~l~G~nG~GKS   35 (176)
T cd03238          21 NVLVVVTGVSGSGKS   35 (176)
T ss_pred             CCEEEEECCCCCCHH
Confidence            568999999999999

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=83.76  E-value=0.52  Score=41.22  Aligned_cols=15  Identities=7%  Similarity=-0.146  Sum_probs=13.4

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ..+..|+||||||||
T Consensus        33 ~~VTAlIGPSGcGKS   47 (253)
T COG1117          33 NKVTALIGPSGCGKS   47 (253)
T ss_pred             CceEEEECCCCcCHH
Confidence            357899999999999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=83.67  E-value=0.4  Score=40.48  Aligned_cols=35  Identities=6%  Similarity=0.052  Sum_probs=21.6

Q ss_pred             CcEEE-ECCCHHHHHHHHHHHHHhccCCceeeeCCC
Q psy10228        189 FTAVV-QGDMPEDIYQKVKEVIQEQSGPSIWVPSKD  223 (225)
Q Consensus       189 fd~vI-~Nddleea~~~lk~iI~~~~~~~~WVp~~~  223 (225)
                      ++.+| .-=|-...+..+..++....-|..|+-..+
T Consensus       142 ~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it~Gq  177 (196)
T PF00448_consen  142 IDGLILTKLDETARLGALLSLAYESGLPISYITTGQ  177 (196)
T ss_dssp             TCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEESSS
T ss_pred             CceEEEEeecCCCCcccceeHHHHhCCCeEEEECCC
Confidence            45544 443545566777777777777777766554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=83.43  E-value=0.78  Score=37.95  Aligned_cols=12  Identities=8%  Similarity=0.099  Sum_probs=11.6

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|.+|+|||
T Consensus         3 i~lvG~~g~GKS   14 (196)
T cd01852           3 LVLVGKTGAGKS   14 (196)
T ss_pred             EEEECCCCCCHH
Confidence            899999999999

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=83.41  E-value=0.47  Score=42.16  Aligned_cols=16  Identities=19%  Similarity=0.283  Sum_probs=14.5

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      ..++++|+||+|+||+
T Consensus        32 ~~~pvLl~G~~GtGKT   47 (272)
T PF12775_consen   32 NGRPVLLVGPSGTGKT   47 (272)
T ss_dssp             CTEEEEEESSTTSSHH
T ss_pred             cCCcEEEECCCCCchh
Confidence            3679999999999999

>KOG0991|consensus

Probab=83.16  E-value=4  Score=36.43  Aligned_cols=48  Identities=10%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             ccCCHHHHHHHHHHHHHHHH-hhC-CCCcEEEEC--CCHHHHHHHHHHHHHh
Q psy10228        164 KRMTEEQAKKMYDRSMKMEQ-EFG-EFFTAVVQG--DMPEDIYQKVKEVIQE  211 (225)
Q Consensus       164 ~R~seeei~~rl~~a~k~E~-~~~-~~fd~vI~N--ddleea~~~lk~iI~~  211 (225)
                      .|+++.++-+|+....+.|. .|- +..+++|--  .|+-++++.|+..+..
T Consensus       170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g  221 (333)
T KOG0991|consen  170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG  221 (333)
T ss_pred             cccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc
Confidence            35678898888776655443 232 234455542  3788999999887754

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=83.11  E-value=2.1  Score=37.63  Aligned_cols=94  Identities=16%  Similarity=0.062  Sum_probs=55.0

Q ss_pred             hhccccceeecccccccccCCCCCCCC-------------------CCccEEEEccCCCCCC----CcccCCCCCCCCCC
Q psy10228         22 ERKKKNFSFSRKFPFMKSKDDKSEDGS-------------------DQEPFMLCYTQDDPTT----EDTTRARREYEVDG   78 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ivl~GpsgsGK~----s~TTRp~R~~E~dG   78 (225)
                      .++......+..||..++-+..+=+..                   ...-++|.||+|+|||    ...-+-.    ..|
T Consensus        58 ~r~~~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~----~~g  133 (254)
T COG1484          58 ARKIERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL----KAG  133 (254)
T ss_pred             HHHHHHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH----HcC
Confidence            344466667778888765443211111                   1236899999999999    1100110    126


Q ss_pred             cceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228         79 RDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus        79 ~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                      ..=.|+ +-.+|-..+++.          ..+|+....+...+.+=...|||
T Consensus       134 ~sv~f~-~~~el~~~Lk~~----------~~~~~~~~~l~~~l~~~dlLIiD  174 (254)
T COG1484         134 ISVLFI-TAPDLLSKLKAA----------FDEGRLEEKLLRELKKVDLLIID  174 (254)
T ss_pred             CeEEEE-EHHHHHHHHHHH----------HhcCchHHHHHHHhhcCCEEEEe
Confidence            666788 455555555432          23488888888866666666665

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=83.09  E-value=16  Score=36.14  Aligned_cols=97  Identities=18%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             cHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhccC--------
Q psy10228        113 SVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNKRM--------  166 (225)
Q Consensus       113 s~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~R~--------  166 (225)
                      .++.|+++.         ...|++|+|    ++..+...|.+ .+-.|   +.||+. ...+.|- .++.|.        
T Consensus        99 gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t-te~~kll~TI~SRc~~~~F~~l  177 (584)
T PRK14952         99 GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT-TEPEKVLPTIRSRTHHYPFRLL  177 (584)
T ss_pred             CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe-CChHhhHHHHHHhceEEEeeCC
Confidence            466666554         235677776    34555555543 34444   445544 3334443 366553        


Q ss_pred             CHHHHHHHHHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228        167 TEEQAKKMYDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       167 seeei~~rl~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~  210 (225)
                      +.+++.+++.+..+.|- .+.. ...++  ..+.++-.+.+.|..++.
T Consensus       178 ~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~  225 (584)
T PRK14952        178 PPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA  225 (584)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            57777777766432221 0000 01111  124466666666666554

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=83.05  E-value=0.86  Score=43.60  Aligned_cols=46  Identities=9%  Similarity=-0.059  Sum_probs=29.9

Q ss_pred             CCCCccEEEEccCCCCCC-----CcccCCCCCCCC--CCcceEEecCHHHHHHh
Q psy10228         47 GSDQEPFMLCYTQDDPTT-----EDTTRARREYEV--DGRDYHFVSSREQMEKD   93 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~-----s~TTRp~R~~E~--dG~dY~FV~s~eef~~~   93 (225)
                      -..++.+.|+||||||||     =.---+|-.|++  ||.+..=+ +.+++.+.
T Consensus       345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~-~~~~lr~~  397 (529)
T TIGR02857       345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA-DADSWRDQ  397 (529)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC-CHHHHHhh
Confidence            344678999999999999     111224555665  77776555 55555544

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=83.01  E-value=0.44  Score=38.18  Aligned_cols=17  Identities=12%  Similarity=0.124  Sum_probs=9.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      .....++|.|++|+|||
T Consensus        22 ~~~~~~ll~G~~G~GKT   38 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKT   38 (185)
T ss_dssp             -----EEE-B-TTSSHH
T ss_pred             CCCcEEEEECCCCCCHH
Confidence            33578999999999999

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=82.96  E-value=0.52  Score=36.26  Aligned_cols=15  Identities=7%  Similarity=-0.006  Sum_probs=13.8

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ++.++|+||+|||||
T Consensus        11 g~~~~i~G~nGsGKS   25 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKS   25 (137)
T ss_dssp             TSEEEEEESTTSSHH
T ss_pred             CCEEEEEccCCCccc
Confidence            568999999999999

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=82.65  E-value=0.7  Score=36.40  Aligned_cols=13  Identities=0%  Similarity=0.008  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|+|+|++|+|||
T Consensus         2 ~i~~~G~~~~GKs   14 (168)
T cd01897           2 TLVIAGYPNVGKS   14 (168)
T ss_pred             eEEEEcCCCCCHH
Confidence            4899999999999

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=82.64  E-value=0.65  Score=40.32  Aligned_cols=15  Identities=13%  Similarity=-0.075  Sum_probs=13.8

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .+.+|+.|||||||+
T Consensus        31 ge~vv~lGpSGcGKT   45 (259)
T COG4525          31 GELVVVLGPSGCGKT   45 (259)
T ss_pred             CCEEEEEcCCCccHH
Confidence            568999999999999

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=82.59  E-value=0.72  Score=38.87  Aligned_cols=15  Identities=0%  Similarity=0.060  Sum_probs=14.0

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +++++|+||+|+|||
T Consensus        25 g~~~~ltGpNg~GKS   39 (199)
T cd03283          25 KNGILITGSNMSGKS   39 (199)
T ss_pred             CcEEEEECCCCCChH
Confidence            479999999999999

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=82.39  E-value=0.59  Score=45.21  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CCccEEEEccCCCCCCCcccC-----CCCCCC--CCCcceEEecCHHHHHHhhh---CCcEEEEEEe-CCccee---ecH
Q psy10228         49 DQEPFMLCYTQDDPTTEDTTR-----ARREYE--VDGRDYHFVSSREQMEKDIQ---NHLFIEAGQY-NDNLYG---TSV  114 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~s~TTR-----p~R~~E--~dG~dY~FV~s~eef~~~i~---~~~FiE~~~~-~gn~YG---Ts~  114 (225)
                      .++.+.|+||||||||+...=     +|..|+  +||.|-.=+ +.+...+.|.   +.-++-.+.. .+-.||   .+.
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i-~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~  432 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI-SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD  432 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH
Confidence            356788999999999811111     123333  368876666 7777777664   2233323333 344677   455


Q ss_pred             HHHHHHHHc
Q psy10228        115 ASVRDVAEK  123 (225)
Q Consensus       115 ~sV~~v~~~  123 (225)
                      ++|.++++.
T Consensus       433 eei~~a~k~  441 (567)
T COG1132         433 EEIEEALKL  441 (567)
T ss_pred             HHHHHHHHH
Confidence            777777754

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=82.34  E-value=11  Score=37.94  Aligned_cols=14  Identities=14%  Similarity=-0.071  Sum_probs=12.5

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-++|+||+|+|||
T Consensus       204 ~n~lL~G~pG~GKT  217 (731)
T TIGR02639       204 NNPLLVGEPGVGKT  217 (731)
T ss_pred             CceEEECCCCCCHH
Confidence            35899999999999

>PRK13342 recombination factor protein RarA; Reviewed

Probab=82.23  E-value=16  Score=34.13  Aligned_cols=13  Identities=15%  Similarity=0.117  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|.||+|+|||
T Consensus        38 ~ilL~GppGtGKT   50 (413)
T PRK13342         38 SMILWGPPGTGKT   50 (413)
T ss_pred             eEEEECCCCCCHH
Confidence            5889999999999

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=82.20  E-value=12  Score=34.03  Aligned_cols=13  Identities=8%  Similarity=0.038  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -+++.||+|+||+
T Consensus        24 a~Lf~G~~G~GK~   36 (328)
T PRK05707         24 AYLLHGPAGIGKR   36 (328)
T ss_pred             eeeeECCCCCCHH
Confidence            5789999999998

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=82.07  E-value=0.77  Score=37.09  Aligned_cols=31  Identities=10%  Similarity=0.093  Sum_probs=20.0

Q ss_pred             cccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228         32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~   64 (225)
                      +.||.|-.....  ...+....+|+||.|||||
T Consensus         5 ~~~~~~~~~~~i--~~~~~~~~~i~G~NgsGKS   35 (162)
T cd03227           5 GRFPSYFVPNDV--TFGEGSLTIITGPNGSGKS   35 (162)
T ss_pred             CCCCEEEeccEE--ecCCCCEEEEECCCCCCHH
Confidence            567776322111  1222368999999999999

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase

Probab=82.06  E-value=0.6  Score=42.42  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=40.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe-CCcceeecHHHHHHHHHcCCeEEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY-NDNLYGTSVASVRDVAEKGKHCIL  129 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~-~gn~YGTs~~sV~~v~~~gk~~il  129 (225)
                      .=++|+|+||+|||..+..-...|      |.|| +          ++-+.-... +|.++|.+.+.++..++---.-|+
T Consensus       147 ~gvli~G~sg~GKS~lal~Li~rg------~~lv-a----------DD~~~~~~~~~~~L~g~~p~~l~~~iEvRG~GIi  209 (304)
T TIGR00679       147 VGVLITGKSGVGKSETALELINRG------HRLV-A----------DDAVEIYRLNGNRLFGRAQELIKHFMEIRGLGII  209 (304)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC------Ccee-e----------cCeEEEEEecCCEEEEeCChhhCCcEEEeCcEEE
Confidence            468999999999994443222111      3466 3          234555556 567888888877766665445556


Q ss_pred             Ecc
Q psy10228        130 DVS  132 (225)
Q Consensus       130 dv~  132 (225)
                      |+.
T Consensus       210 ~v~  212 (304)
T TIGR00679       210 NVE  212 (304)
T ss_pred             Ech
Confidence            654

The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=82.04  E-value=5.9  Score=38.60  Aligned_cols=116  Identities=19%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             EEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH
Q psy10228         53 FMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE  122 (225)
Q Consensus        53 ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~  122 (225)
                      .+++||-|+|||          -|++.+         ++-++ ..=..=+.|..|.++.--++.+ -+-+.++.|+++.+
T Consensus        41 YlfsG~RGvGKTt~Ari~AkalNC~~~~---------~~ePC-~~C~~Ck~I~~g~~~DviEiDa-ASn~gVddiR~i~e  109 (515)
T COG2812          41 YLFSGPRGVGKTTIARILAKALNCENGP---------TAEPC-GKCISCKEINEGSLIDVIEIDA-ASNTGVDDIREIIE  109 (515)
T ss_pred             hhhcCCCCcCchhHHHHHHHHhcCCCCC---------CCCcc-hhhhhhHhhhcCCcccchhhhh-hhccChHHHHHHHH
Confidence            589999999999          344441         11122 2333446788888877776654 34458999999987


Q ss_pred             c---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEecCC-HH-----HHHH----HhccCCHHHHHHHHHH
Q psy10228        123 K---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKPKS-VE-----SIME----MNKRMTEEQAKKMYDR  177 (225)
Q Consensus       123 ~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~pps-~~-----~L~~----L~~R~seeei~~rl~~  177 (225)
                      +         -|+.|+|    ++.++...|-+ -+--| .++||-... ..     .|=+    --+|++.++|..+|+.
T Consensus       110 ~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~  189 (515)
T COG2812         110 KVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA  189 (515)
T ss_pred             HhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence            5         4566776    35566555544 23334 667765432 11     1111    1256677888877777


Q ss_pred             HH
Q psy10228        178 SM  179 (225)
Q Consensus       178 a~  179 (225)
                      ..
T Consensus       190 i~  191 (515)
T COG2812         190 IL  191 (515)
T ss_pred             HH
Confidence            54

>KOG1533|consensus

Probab=81.68  E-value=0.74  Score=40.78  Aligned_cols=17  Identities=6%  Similarity=-0.015  Sum_probs=14.6

Q ss_pred             EEEEccCCCCCC----------CcccC
Q psy10228         53 FMLCYTQDDPTT----------EDTTR   69 (225)
Q Consensus        53 ivl~GpsgsGK~----------s~TTR   69 (225)
                      .+++||+|||||          +++-|
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr   31 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGR   31 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCC
Confidence            378999999999          77777

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=81.46  E-value=9.8  Score=35.42  Aligned_cols=13  Identities=8%  Similarity=0.066  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -+++.||+|+||+
T Consensus        40 a~lf~Gp~G~GKt   52 (397)
T PRK14955         40 GYIFSGLRGVGKT   52 (397)
T ss_pred             eEEEECCCCCCHH
Confidence            4789999999999

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=81.43  E-value=0.77  Score=40.64  Aligned_cols=15  Identities=0%  Similarity=-0.223  Sum_probs=13.8

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ..+++|+|+||||||
T Consensus        21 g~~~~vtGvSGsGKS   35 (261)
T cd03271          21 GVLTCVTGVSGSGKS   35 (261)
T ss_pred             CcEEEEECCCCCchH
Confidence            468999999999999

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=81.27  E-value=3.7  Score=34.38  Aligned_cols=12  Identities=25%  Similarity=0.221  Sum_probs=11.6

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+||+|||||
T Consensus         3 vll~G~~~sGKT   14 (203)
T cd04105           3 VLLLGPSDSGKT   14 (203)
T ss_pred             EEEEcCCCCCHH
Confidence            799999999999

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=81.11  E-value=0.84  Score=39.32  Aligned_cols=12  Identities=8%  Similarity=-0.147  Sum_probs=11.4

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      ++|+|++|+|||
T Consensus         3 v~lvG~~~~GKS   14 (233)
T cd01896           3 VALVGFPSVGKS   14 (233)
T ss_pred             EEEECCCCCCHH
Confidence            789999999999

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=81.08  E-value=0.79  Score=38.41  Aligned_cols=17  Identities=12%  Similarity=0.073  Sum_probs=14.9

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||+|||||
T Consensus        27 ~~Ge~~~i~G~nGsGKS   43 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKS   43 (216)
T ss_pred             cCCCEEEEECCCCCCHH
Confidence            34678999999999999

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=80.96  E-value=0.83  Score=38.63  Aligned_cols=16  Identities=13%  Similarity=-0.008  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        12 ~Ge~~~l~G~NGsGKS   27 (213)
T PRK15177         12 YHEHIGILAAPGSGKT   27 (213)
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3578999999999999

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=80.82  E-value=0.29  Score=52.14  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228         26 KNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~   64 (225)
                      ..+.|....|-++.++..-+.-.....+||+|++|||||
T Consensus        65 p~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKT  103 (1294)
T PRK11131         65 PEITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKT  103 (1294)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHH
Confidence            467888889988887754444444568999999999999

>PF13245 AAA_19: Part of AAA domain

Probab=80.76  E-value=0.85  Score=32.66  Aligned_cols=15  Identities=13%  Similarity=0.056  Sum_probs=12.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ....+|.||+|+|||
T Consensus        10 ~~~~vv~g~pGtGKT   24 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKT   24 (76)
T ss_pred             CCeEEEECCCCCCHH
Confidence            346778999999999

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=80.63  E-value=0.84  Score=37.52  Aligned_cols=16  Identities=13%  Similarity=0.032  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        17 ~Ge~~~i~G~nGsGKS   32 (190)
T TIGR01166        17 RGEVLALLGANGAGKS   32 (190)
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=80.56  E-value=0.75  Score=39.31  Aligned_cols=18  Identities=0%  Similarity=0.015  Sum_probs=15.3

Q ss_pred             CCCccEEEEccCCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTTE   65 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~s   65 (225)
                      ...+.+.|+||||||||+
T Consensus        19 ~~Ge~~~l~G~sGsGKST   36 (226)
T cd03270          19 PRNKLVVITGVSGSGKSS   36 (226)
T ss_pred             CCCcEEEEEcCCCCCHHH
Confidence            346799999999999993

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=80.55  E-value=0.78  Score=35.20  Aligned_cols=13  Identities=0%  Similarity=-0.021  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -|+++|++|+|||
T Consensus         3 ~i~l~G~~~~GKs   15 (157)
T cd04164           3 KVVIVGKPNVGKS   15 (157)
T ss_pred             EEEEECCCCCCHH
Confidence            4899999999999

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PTZ00202 tuzin; Provisional

Probab=80.41  E-value=3.1  Score=40.27  Aligned_cols=15  Identities=0%  Similarity=-0.153  Sum_probs=13.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .++++|+||+|+|||
T Consensus       286 privvLtG~~G~GKT  300 (550)
T PTZ00202        286 PRIVVFTGFRGCGKS  300 (550)
T ss_pred             ceEEEEECCCCCCHH
Confidence            468899999999999

>cd04163 Era Era subfamily

Probab=80.40  E-value=0.77  Score=35.21  Aligned_cols=14  Identities=0%  Similarity=-0.175  Sum_probs=12.7

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..|+++|++|||||
T Consensus         4 ~~i~~~G~~g~GKt   17 (168)
T cd04163           4 GFVAIVGRPNVGKS   17 (168)
T ss_pred             eEEEEECCCCCCHH
Confidence            45899999999998

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=80.36  E-value=0.85  Score=38.27  Aligned_cols=17  Identities=24%  Similarity=0.038  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||+|||||
T Consensus        26 ~~Ge~~~i~G~nGsGKS   42 (220)
T cd03263          26 YKGEIFGLLGHNGAGKT   42 (220)
T ss_pred             cCCcEEEEECCCCCCHH
Confidence            34678999999999999

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=80.23  E-value=0.87  Score=37.98  Aligned_cols=16  Identities=13%  Similarity=0.009  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        26 ~G~~~~i~G~nGsGKS   41 (214)
T cd03292          26 AGEFVFLVGPSGAGKS   41 (214)
T ss_pred             CCCEEEEECCCCCCHH
Confidence            4568999999999999

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=80.09  E-value=7.5  Score=34.06  Aligned_cols=13  Identities=8%  Similarity=0.020  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .+++.||+|+||+
T Consensus        26 alL~~Gp~G~Gkt   38 (325)
T COG0470          26 ALLFYGPPGVGKT   38 (325)
T ss_pred             eeeeeCCCCCCHH
Confidence            4899999999998

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=80.06  E-value=14  Score=36.65  Aligned_cols=14  Identities=14%  Similarity=0.427  Sum_probs=12.4

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..+++.||.|+||+
T Consensus        40 hayLf~Gp~G~GKt   53 (614)
T PRK14971         40 HAYLFCGPRGVGKT   53 (614)
T ss_pred             eeEEEECCCCCCHH
Confidence            35799999999998

>cd00879 Sar1 Sar1 subfamily

Probab=80.06  E-value=1.1  Score=36.20  Aligned_cols=14  Identities=7%  Similarity=0.055  Sum_probs=12.6

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-|+|+|++|||||
T Consensus        20 ~ki~ilG~~~~GKS   33 (190)
T cd00879          20 AKILFLGLDNAGKT   33 (190)
T ss_pred             CEEEEECCCCCCHH
Confidence            45799999999999

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3tvt_A	292	Structural Basis For Discs Large Interaction With P		1e-77
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		2e-70
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		4e-65
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		4e-65
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-64
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		5e-17
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		4e-16
1gky_A	187	Refined Structure Of The Complex Between Guanylate		4e-16
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		4e-16
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		5e-14
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		6e-14
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		7e-14
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		1e-13
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		7e-13
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		8e-12
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		8e-10
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		9e-10
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		1e-09
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		6e-07
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		1e-05
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		3e-05
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		2e-04
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		6e-04
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		6e-04

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/159 (83%), Positives = 148/159 (93%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYEVDGRDYHFVSSREQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKH
Sbjct: 132 TTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 191
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQVA LYPVA+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFG
Sbjct: 192 CILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFG 251
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E+FT VVQGD  E+IY KVK +I  QSGP+IWVPSK+ L
Sbjct: 252 EYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 290

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 145/159 (91%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR VAEKGKH
Sbjct: 138 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKH 197
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+T+EQA+K ++R++++EQEF 
Sbjct: 198 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFERAVRLEQEFT 257
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E FTA+VQGD  EDIY +VK++I+EQSGP IWVP+K+ L
Sbjct: 258 EHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL 296

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 140/159 (88%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 143 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 202
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF 
Sbjct: 203 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 262
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 263 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 301

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score =  243 bits (621), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 140/159 (88%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 137 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 196
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF 
Sbjct: 197 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 256
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 257 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 295

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 140/159 (88%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYE+DGRDYHFVSSRE+MEKDI+ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 563 TTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 622
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF 
Sbjct: 623 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 682
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 683 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 721

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  E DG+DY+FV+ RE M++DI    FIE  +++ NLYGTS  +VR V    + 
Sbjct: 39  TTRNPRPGEEDGKDYYFVT-REMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRI 97
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM----TEEQ-AKKMYDRSMKM 181
           C+LDV    ++ ++   L P+ IF++P S++ ++E   R+    TEE  AK++      M
Sbjct: 98  CVLDVDLQGVRSIKKTDLCPIYIFVQPPSLD-VLEQRLRLRNTETEESLAKRLAAARTDM 156
Query: 182 E--QEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
           E  +E G F   ++  D+ +  Y  +K+ + E+
Sbjct: 157 ESSKEPGLFDLVIINDDL-DKAYATLKQALSEE 188

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 22/156 (14%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV+G+DY+FVS  E  +  I+N+ FIE  Q++ N YG++VASV+ V++ GK 
Sbjct: 52  TTRTPRAGEVNGKDYNFVSVDE-FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKT 110
Query: 127 CILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEEQAKK 173
           CILD+    +K ++ +  L    +FI P SVE + +            +NKR++  QA+ 
Sbjct: 111 CILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 170
Query: 174 MYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
            Y        E G     +V  D+ +  Y+++K+ I
Sbjct: 171 AY-------AETGAHDKVIVNDDL-DKAYKELKDFI 198

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 22/160 (13%)
Query: 63  TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
           +   TTR  R  EV+G+DY+FVS  ++ +  I+N+ FIE  Q++ N YG++VASV+ V++
Sbjct: 33  SVSSTTRTPRAGEVNGKDYNFVSV-DEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 91
Query: 123 KGKHCILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEE 169
            GK CILD+    +K ++ +  L    +FI P SVE + +            +NKR++  
Sbjct: 92  SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 151
Query: 170 QAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
           QA+  Y        E G     +V  D+ +  Y+++K+ I
Sbjct: 152 QAELAY-------AETGAHDKVIVNDDL-DKAYKELKDFI 183

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 22/160 (13%)
Query: 63  TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
           +   TTR  R  EV+G+DY+FVS  ++ +  I+N+ FIE  Q++ N YG++VASV+ V++
Sbjct: 32  SVSSTTRTPRAGEVNGKDYNFVSV-DEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 90
Query: 123 KGKHCILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEE 169
            GK CILD+    +K ++ +  L    +FI P SVE + +            +NKR++  
Sbjct: 91  SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150
Query: 170 QAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
           QA+  Y        E G     +V  D+ +  Y+++K+ I
Sbjct: 151 QAELAY-------AETGAHDKVIVNDDL-DKAYKELKDFI 182

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
           +++ + ++ KH +LDV+ NA+ RL  A  YP+ +F+ P S + +  M  R+  E    A+
Sbjct: 141 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 200
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
           K+Y+RS K+ +     FT  +    M +  Y  +KE IQ+Q    +WV
Sbjct: 201 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 248

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
           +++ + ++ KH +LDV+ NA+ RL  A  YP+ +F+ P S + +  M  R+  E    A+
Sbjct: 273 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 332
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
           K+Y+RS K+ +     FT  +    M +  Y  +KE IQ+Q    +WV
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 380

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
           +++ + ++ KH +LDV+ NA+ RL  A  YP+ +F+ P S + +  M  R+  E    A+
Sbjct: 281 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 340
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
           K+Y+RS K+ +     FT  +    M +  Y  +KE IQ+Q    +WV
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 388

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R+ E DG++YHF+S+ E+M ++I  + F+E G Y  N++GT   +V  + ++ K 
Sbjct: 54  TTRPPRKSEEDGKEYHFIST-EEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKI 112
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
            ILD+    +K ++ A L P  +FI P         ++    E  +++   S  +  ++ 
Sbjct: 113 AILDIEPQTLKIVRTAELSPFIVFIAP--------TDQGTQTEALQQLQKDSEAIRSQYA 164
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV 219
            +F   +  +  ++  +K++E   +      WV
Sbjct: 165 HYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  ++ E +G++Y+FVS  +QM +DI N+ ++E G + D +YGT + ++R + E+G  
Sbjct: 40  TTRPPKKDEENGKNYYFVS-HDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLI 98
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
            ILDV   A+K L+ A   P  +FI   ++   +       +E  +++   S  +++ + 
Sbjct: 99  AILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN-----EDESLQRLQKESDILQRTYA 153
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQ 210
            +F   +  +  ++  + ++E ++
Sbjct: 154 HYFDLTIINNEIDETIRHLEEAVE 177

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAK 172
           +VR +AEK KH +LDV+ +AI+RL     YP+ +F  P+S  ++  + + +   +    +
Sbjct: 190 TVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTR 249
Query: 173 KMYDRSMKMEQEFGEFFTAVVQGDMPEDI-YQKVKEVIQEQSGPSIWV 219
           ++Y ++ K+ +     FTA +  +   D  YQ++K +I+EQ    IW 
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWT 297

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +RE E +G DY+FV  ++  E+ ++   F+E  +Y +N YGT  +       +GK 
Sbjct: 47  TTRNKREKETNGVDYYFVD-KDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKI 105
Query: 127 CILDVSGNAIKRLQVASLY--PVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE 184
           C+ + + N +K+L+ +      + IF+KP S++ ++   K    E+ +++  R  ++ +E
Sbjct: 106 CLFEXNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTRE 165

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +RE E +G DY+F+  +   E  ++N  F+E   Y +N YGT  +      E+ K 
Sbjct: 58  TTRKKREKEKEGVDYYFID-KTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI 116
Query: 127 CILDVSGNAIKRLQVASLYPVA--IFIKPKSVESIME-MNKRMTEEQ---AKKMYDRSMK 180
           C+ +++ N +K+L+ ++    A  IFIKP S + ++  +  R TE Q    K+M   +++
Sbjct: 117 CLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE 176
Query: 181 M-EQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
           + E     F  +++  D+    YQ++K  +
Sbjct: 177 LHEANLLNFNLSIINDDLTL-TYQQLKNYL 205

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  RE EVDG DY F  +R+  E  I++  FIE  +Y  N YGT V  V+D  ++G  
Sbjct: 41  TTRQMREGEVDGVDYFF-KTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHD 99
Query: 127 CILDVSGNAIKRLQVASLYPVA--IFIKPKSVESIME-MNKRMTEEQAK 172
             L++     K  QV   +P A  IF+ P S+E + E +  R TE   K
Sbjct: 100 VFLEIEVEGAK--QVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEK 146

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTRA R+ E +G+DY+FV  RE+  +   N   IE  +   N YG    ++ D  +KG  
Sbjct: 62  TTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS 120
Query: 127 CILDVSG-NAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQA 171
            +L +    A K +++   + V+IFI P S+E   E+ +R+   +A
Sbjct: 121 TLLVIDWQGAFKFMEMMREHVVSIFIMPPSME---ELRRRLCGRRA 163

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 58  TQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASV 117
           T  D +   TTR  RE E DG DY+F  SRE  E+ I++   +E  +Y  N YGT +  V
Sbjct: 34  TSFDYSISXTTRLPREGEQDGVDYYF-RSREVFEQAIKDGKXLEYAEYVGNYYGTPLEYV 92
Query: 118 RDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKP 153
            +    G    L++      +++ A    + IF+ P
Sbjct: 93  EEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTP 128

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV G  Y FV+  ++ ++ I    F+E  +   N YGTS  ++  V   G  
Sbjct: 52  TTRQPRPGEVHGEHYFFVN-HDEFKEXISRDAFLEHAEVFGNYYGTSREAIEQVLATGVD 110
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMK 180
             LD+     ++++    +  +IFI P S    +E+++R+      +EE   K   +++ 
Sbjct: 111 VFLDIDWQGAQQIRQKXPHARSIFILPPSK---IELDRRLRGRGQDSEEVIAKRXAQAVA 167
Query: 181 MEQEFGEFFTAVVQGDM 197
               + E+   +V  D 
Sbjct: 168 EXSHYAEYDYLIVNDDF 184

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 63  TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
           +   TTR  R  EV G  Y FV+  ++ ++ I    F+E  +   N YGTS  ++  V  
Sbjct: 36  SVSHTTRQPRPGEVHGEHYFFVN-HDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLA 94
Query: 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM 166
            G    LD+     ++++    +  +IFI P S    +E+++R+
Sbjct: 95  TGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSK---IELDRRL 135

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
           TTRA R  EVDG DYHF+    + ++ I     +E  + +  L+  GT    VR  A  G
Sbjct: 54  TTRAPRPGEVDGVDYHFIDP-TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 112
Query: 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155
              +++V     + ++      V +F+ P S
Sbjct: 113 VPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 143

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
           TTRA R  EVDG DYHF+    + ++ I     +E  + +  L+  GT    VR  A  G
Sbjct: 57  TTRAPRPGEVDGVDYHFIDP-TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 115
Query: 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155
              +++V     + ++      V +F+ P S
Sbjct: 116 VPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	1e-73
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-72
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-71
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	4e-58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	1e-56
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-43
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	5e-42
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-39
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	1e-38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	3e-28
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	2e-27
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	4e-27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	1e-26
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	5e-25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	5e-25
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	7e-24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	7e-21
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	1e-20
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	5e-20

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  224 bits (573), Expect = 1e-73
 Identities = 133/160 (83%), Positives = 148/160 (92%)

Query: 66  DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGK 125
            TTR +REYEVDGRDYHFVSSREQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGK
Sbjct: 131 HTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGK 190

Query: 126 HCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEF 185
           HCILDVSGNAIKRLQVA LYPVA+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEF
Sbjct: 191 HCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEF 250

Query: 186 GEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           GE+FT VVQGD  E+IY KVK +I  QSGP+IWVPSK+ L
Sbjct: 251 GEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 290

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  221 bits (566), Expect = 1e-72
 Identities = 109/160 (68%), Positives = 140/160 (87%)

Query: 66  DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGK 125
            TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GK
Sbjct: 136 HTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGK 195

Query: 126 HCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEF 185
           HCILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF
Sbjct: 196 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEF 255

Query: 186 GEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
            E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 256 TECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 295

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  229 bits (583), Expect = 4e-71
 Identities = 108/160 (67%), Positives = 140/160 (87%)

Query: 66  DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGK 125
            TTR +REYE+DGRDYHFVSSRE+MEKDI+ H FIEAGQYN +LYGTSV SVR+VAE+GK
Sbjct: 562 HTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGK 621

Query: 126 HCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEF 185
           HCILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF
Sbjct: 622 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEF 681

Query: 186 GEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
            E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 682 TECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 721

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  181 bits (462), Expect = 4e-58
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R+ E DG++YHF+S  E+M ++I  + F+E G Y  N++GT   +V  + ++ K 
Sbjct: 54  TTRPPRKSEEDGKEYHFIS-TEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKI 112

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
            ILD+    +K ++ A L P  +FI P    +  E  +++ ++           +  ++ 
Sbjct: 113 AILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSE--------AIRSQYA 164

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV 219
            +F   +  +  ++  +K++E   +      WV
Sbjct: 165 HYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  177 bits (451), Expect = 1e-56
 Identities = 38/144 (26%), Positives = 80/144 (55%), Gaps = 6/144 (4%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  ++ E +G++Y+FVS  +QM +DI N+ ++E G + D +YGT + ++R + E+G  
Sbjct: 40  TTRPPKKDEENGKNYYFVS-HDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLI 98

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
            ILDV   A+K L+ A   P  +FI   ++   +       +E  +++   S  +++ + 
Sbjct: 99  AILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN-----EDESLQRLQKESDILQRTYA 153

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQ 210
            +F   +  +  ++  + ++E ++
Sbjct: 154 HYFDLTIINNEIDETIRHLEEAVE 177

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score =  148 bits (375), Expect = 3e-43
 Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 1   MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQD 60
            ++    +               + +    S++      +D  ++    + P        
Sbjct: 168 AEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLR 227

Query: 61  DP----------TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110
           +              D  R +             +  E     I      +AG    +  
Sbjct: 228 EAGFLRPVTIFGPIADVAREKL------------AREEPDIYQIAKSEPRDAGTDQRSSG 275

Query: 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---T 167
              + +++ + ++ KH +LDV+ NA+ RL  A  YP+ +F+ P S + +  M  R+   +
Sbjct: 276 IIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPES 335

Query: 168 EEQAKKMYDRSMKMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQSGPSIWVP 220
            + A+K+Y+RS K+ +     FT  +    M +  Y  +KE IQ+Q    +WV 
Sbjct: 336 RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVS 389

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score =  144 bits (363), Expect = 5e-42
 Identities = 24/168 (14%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL--YGTSVASVRDVAEKG 124
            TR   +  +         ++  +  +   H  IE      +L    + +  + ++A   
Sbjct: 179 ITRVTADISL---------AKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTL 229

Query: 125 KHCILDVSG-NAIKRLQVASLYPVAIFIKPKS---VESIMEMNKRMTEEQAKKMYDRSMK 180
           +  +LD    N   +L   SL P+ +++K  S   ++ +++   +   +        + K
Sbjct: 230 QLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADK 289

Query: 181 MEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE---QSGPSIWVPSKDPL 225
           + Q   E F  ++  +  ED  + + + ++     + P         L
Sbjct: 290 LAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPLL 337

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score =  140 bits (352), Expect = 3e-39
 Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 26/238 (10%)

Query: 1   MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQD 60
            ++    +               + +    S++      +D  ++    + P        
Sbjct: 160 AEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLR 219

Query: 61  DPT----------TEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110
           +              D  R +   E            E     I      +AG    +  
Sbjct: 220 EAGFLRPVTIFGPIADVAREKLARE------------EPDIYQIAKSEPRDAGTDQRSSG 267

Query: 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---T 167
              + +++ + ++ KH +LDV+ NA+ RL  A  YP+ +F+ P S + +  M  R+   +
Sbjct: 268 IIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPES 327

Query: 168 EEQAKKMYDRSMKMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQSGPSIWVPSKDP 224
            + A+K+Y+RS K+ +     FT  +    M +  Y  +KE IQ+Q    +WV     
Sbjct: 328 RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKA 385

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score =  134 bits (339), Expect = 1e-38
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 7/229 (3%)

Query: 1   MDRHDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQD 60
            ++        R   +   +         F R     +     ++   +    +    + 
Sbjct: 72  AEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRY 131

Query: 61  DP---TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASV 117
            P           +R   + G        +   E   Q  +     + +       + +V
Sbjct: 132 PPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETVSRTDSPSKIIKLDTV 191

Query: 118 RDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR---MTEEQAKKM 174
           R +AEK KH +LDV+ +AI+RL     YP+ +F  P+S  ++  + +     +    +++
Sbjct: 192 RVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRL 251

Query: 175 YDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWVPSK 222
           Y ++ K+ +     FTA +      +  YQ++K +I+EQ    IW    
Sbjct: 252 YAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAED 300

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score =  102 bits (257), Expect = 2e-27
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 22/159 (13%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  E DG+DY+FV+ RE M++DI    FIE  +++ NLYGTS  +VR V    + 
Sbjct: 39  TTRNPRPGEEDGKDYYFVT-REMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRI 97

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRM------TEEQAKKMYD 176
           C+L  D+ G       +       + IF++P S++    + +R+      TEE   K   
Sbjct: 98  CVLDVDLQG----VRSIKKTDLCPIYIFVQPPSLD---VLEQRLRLRNTETEESLAKRLA 150

Query: 177 RS---MKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
            +   M+  +E G F   ++  D+ +  Y  +K+ + E+
Sbjct: 151 AARTDMESSKEPGLFDLVIINDDL-DKAYATLKQALSEE 188

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score =  101 bits (255), Expect = 4e-27
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +RE E +G DY+FV  ++  E+ ++   F+E  +Y +N YGT  +       +GK 
Sbjct: 47  TTRNKREKETNGVDYYFVD-KDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKI 105

Query: 127 CIL--DVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKK-MYDR 177
           C+   +++G    +        + IF+KP S++    +  R+        E+  K M + 
Sbjct: 106 CLFEMNINGVKQLKESKHIQDGIYIFVKPPSID---ILLGRLKNRNTEKPEEINKRMQEL 162

Query: 178 SMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
           + +M++     F   +  D     Y +++E +   
Sbjct: 163 TREMDEADKVGFNYFIVNDDLARTYAELREYLLGS 197

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score =  101 bits (253), Expect = 1e-26
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +RE E +G DY+F+  +   E  ++N  F+E   Y +N YGT  +      E+ K 
Sbjct: 58  TTRKKREKEKEGVDYYFID-KTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI 116

Query: 127 CIL--DVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKK-MYDR 177
           C+   +++G    +        + IFIKP S +    +  R+       +EQ +K M   
Sbjct: 117 CLFEMNINGVKQLKKSTHIKNALYIFIKPPSTD---VLLSRLLTRNTENQEQIQKRMEQL 173

Query: 178 SMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
           ++++ +     F   +  D     YQ++K  +   
Sbjct: 174 NIELHEANLLNFNLSIINDDLTLTYQQLKNYLLNS 208

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score = 96.4 bits (241), Expect = 5e-25
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 12/105 (11%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  RE EVDG DY F + R+  E  I++  FIE  +Y  N YGT V  V+D  ++G  
Sbjct: 41  TTRQMREGEVDGVDYFFKT-RDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHD 99

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
             L  +V G      QV   +P  + IF+ P S+E    + +R+ 
Sbjct: 100 VFLEIEVEG----AKQVRKKFPDALFIFLAPPSLE---HLRERLV 137

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score = 96.4 bits (241), Expect = 5e-25
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  RE E DG DY+F S RE  E+ I++   +E  +Y  N YGT +  V +    G  
Sbjct: 43  TTRLPREGEQDGVDYYFRS-REVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVD 101

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
             L  +V G     +QV    P  + IF+ P  +    E+  R+ 
Sbjct: 102 IFLEIEVQG----AMQVRKAMPEGIFIFLTPPDLS---ELKNRII 139

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score = 93.4 bits (233), Expect = 7e-24
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
           TTRA R  EVDG DYHF+    + ++ I     +E  + +  L+  GT    VR  A  G
Sbjct: 54  TTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 112

Query: 125 KHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT-------EEQAKK 173
              ++  D++G       +    P  V +F+ P S +   ++  R+        +   ++
Sbjct: 113 VPVLIEVDLAGA----RAIKKTMPEAVTVFLAPPSWQ---DLQARLIGRGTETADVIQRR 165

Query: 174 MYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQ 210
           +   + ++E      F  VV     E    ++  ++ 
Sbjct: 166 L--DTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score = 85.6 bits (213), Expect = 7e-21
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +R  + +G DY F+    + +  ++   F+E     +  YGT    V    + G+ 
Sbjct: 41  TTRPKRPGDQEGVDYFFI-DETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRD 99

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
            +L  D  G      Q+  L+P  ++IFI P S+E    + +R+ 
Sbjct: 100 VLLEIDWQGA----RQIRELFPPALSIFILPPSIE---ALRERLI 137

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score = 85.3 bits (212), Expect = 1e-20
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV G  Y FV + ++ ++ I    F+E  +   N YGTS  ++  V   G  
Sbjct: 52  TTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVD 110

Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
             L  D  G      Q+    P   +IFI P S     E+++R+ 
Sbjct: 111 VFLDIDWQGA----QQIRQKMPHARSIFILPPSKI---ELDRRLR 148

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTRA R+ E +G+DY+FV  RE+  +   N   IE  +   N YG    ++ D  +KG  
Sbjct: 62  TTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS 120

Query: 127 CIL--DVSGNAIKRLQVASLYP---VAIFIKPKSVESIMEMNKRMT 167
            +L  D  G      +   +     V+IFI P S+E   E+ +R+ 
Sbjct: 121 TLLVIDWQGA----FKFMEMMREHVVSIFIMPPSME---ELRRRLC 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	100.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	100.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	100.0
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	100.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	100.0
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	100.0
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	100.0
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	100.0
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.97
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.97
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.94
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.94
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.92
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.9
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.73
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.13
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.96
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.91
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.87
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.81
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.65
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.62
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.49
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.49
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.47
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.47
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.42
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.41
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.36
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.34
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.33
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.26
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.24
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.22
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.21
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.13
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.11
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.1
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.09
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.03
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.01
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.95
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.91
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.88
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.87
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.83
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.79
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.73
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.71
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.69
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.66
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.63
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.53
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.52
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.5
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.46
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.42
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.39
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.38
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.31
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.26
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.22
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.21
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.16
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.06
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	97.05
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.05
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.04
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.01
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.99
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.98
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.91
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.88
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.77
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.68
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.66
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.63
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.47
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.47
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.47
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.3
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.1
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.08
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.04
1via_A	175	Shikimate kinase; structural genomics, transferase	95.95
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.88
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.52
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.26
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.7
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	92.84
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	92.73
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.98
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	90.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	90.54
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	90.18
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	89.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	89.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	89.03
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	86.55
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	85.46
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	85.33
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	85.09
4a74_A	231	DNA repair and recombination protein RADA; hydrola	84.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	84.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	84.28
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	83.71
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	83.35
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	83.32
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	83.09
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	83.03
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	83.02
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	82.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	82.61
1b0u_A	262	Histidine permease; ABC transporter, transport pro	82.51
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	82.28
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	82.24
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	82.07
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	81.87
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	81.85
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	81.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	81.69
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	81.51
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	81.42
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	81.15
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	81.11
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	81.03
1sgw_A	214	Putative ABC transporter; structural genomics, P p	80.84
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	80.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	80.8
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	80.72
1g6h_A	257	High-affinity branched-chain amino acid transport	80.72
2ghi_A	260	Transport protein; multidrug resistance protein, M	80.69
1ji0_A	240	ABC transporter; ATP binding protein, structural g	80.59
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	80.55
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	80.32

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=2.1e-53  Score=378.13  Aligned_cols=190  Identities=71%  Similarity=1.063  Sum_probs=170.9

Q ss_pred             ecccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHH
Q psy10228         31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEK   92 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~   92 (225)
                      ...++.|+.+...  .++..+||||+||+   |+                  |||||+||+||+||+|||||+++++|++
T Consensus        83 ~~~~~~YE~V~~~--~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~  157 (292)
T 3tvt_A           83 EENVLSYEAVQRL--SINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMER  157 (292)
T ss_dssp             ---CCCEEEEEEE--ECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHH
T ss_pred             cccccchheEEec--cCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHH
Confidence            3456778877653  56788999999995   76                  9999999999999999999988999999


Q ss_pred             hhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHH
Q psy10228         93 DIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAK  172 (225)
Q Consensus        93 ~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~  172 (225)
                      +|++|.||||++|+||+|||++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|++++++.++++++
T Consensus       158 ~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~  237 (292)
T 3tvt_A          158 DIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAK  237 (292)
T ss_dssp             HHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHH
T ss_pred             HHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999966666667778


Q ss_pred             HHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228        173 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL  225 (225)
Q Consensus       173 ~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~  225 (225)
                      +++.++.++|++++++||+||+|||+++|+++|+++|.+++++++|||++++|
T Consensus       238 ~~~~r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~~~l  290 (292)
T 3tvt_A          238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL  290 (292)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC----
T ss_pred             HHHHHHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCcccc
Confidence            88888888899999999999999999999999999999999999999999886

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=6.9e-52  Score=368.51  Aligned_cols=189  Identities=58%  Similarity=0.948  Sum_probs=176.3

Q ss_pred             cccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHh
Q psy10228         32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKD   93 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~   93 (225)
                      ..+|.|+-+...  ..+..++|||+||   ||+                  ||||||||+||+||+|||||.|+++|+++
T Consensus        89 ~~~~~Ye~V~~~--~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~  163 (295)
T 1kjw_A           89 DSVLSYETVTQM--EVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKD  163 (295)
T ss_dssp             CCCCCEEEEEEE--ECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHH
T ss_pred             CCCCCcceeeee--cCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHH
Confidence            346677766542  3466799999999   687                  89999999999999999999679999999


Q ss_pred             hhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHH
Q psy10228         94 IQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKK  173 (225)
Q Consensus        94 i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~  173 (225)
                      |++|.||||++|+||+|||++++|++++++|++||||++++|+++++...++|++|||.|||.++|++|++|++++++++
T Consensus       164 i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t~~~i~~  243 (295)
T 1kjw_A          164 IQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK  243 (295)
T ss_dssp             HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHH
T ss_pred             HHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228        174 MYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL  225 (225)
Q Consensus       174 rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~  225 (225)
                      |+++|.++|+.+.+.||++|+||++++|+++|+.+|..++++|+|||++++|
T Consensus       244 rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~~~~  295 (295)
T 1kjw_A          244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL  295 (295)
T ss_dssp             HHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECSCCC
T ss_pred             HHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCCCCC
Confidence            9999977889999999999999999999999999999999999999999986

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=100.00  E-value=3e-50  Score=336.65  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=149.2

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      .|||||+|||||||+                  ||||||||+||+||+||||| |+++|++++++|.|+||++|+||+||
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fv-s~~eF~~~i~~g~flE~~~~~g~~YG   79 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEee-cHHHHHHHHHcCCEEEEEEEcCceee
Confidence            379999999999998                  99999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhh-ccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhh--
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVA-SLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEF--  185 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~-~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~--  185 (225)
                      |++++|++++++|++||+|++++|++.++.. .+.|++|||.|||.++|++ |+.|+  ++++|++||.+|. .|+.+  
T Consensus        80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~-~e~~~~~  158 (186)
T 1ex7_A           80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ-AELAYAE  158 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHH-HHHHHHT
T ss_pred             eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhcc
Confidence            9999999999999999999999999999863 5678999999999999997 99888  5789999999995 46554  


Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        186 GEFFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       186 ~~~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                      .+.||+||+|||+++|+++|++||..+
T Consensus       159 ~~~fD~vIvNddle~a~~~l~~iI~ae  185 (186)
T 1ex7_A          159 TGAHDKVIVNDDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             TTCSSEEEECSSHHHHHHHHHHHHTTC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHHhc
Confidence            457999999999999999999999764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-47  Score=374.68  Aligned_cols=188  Identities=58%  Similarity=0.951  Sum_probs=176.6

Q ss_pred             ccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhh
Q psy10228         33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDI   94 (225)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i   94 (225)
                      .+|.|+-+...  .....++|||+|||   |+                  |||||+||+||+||+|||||+|+++|+++|
T Consensus       516 ~~~~Ye~V~~~--~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i  590 (721)
T 2xkx_A          516 SVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI  590 (721)
T ss_pred             cCCCceeeecc--cCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHH
Confidence            45667766542  45677999999995   76                  999999999999999999996799999999


Q ss_pred             hCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHH
Q psy10228         95 QNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKM  174 (225)
Q Consensus        95 ~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~r  174 (225)
                      ++|+||||++|+||+|||++++|++++++|++||||++++|+++|+...++|++|||.|||.++|++|++|++++++++|
T Consensus       591 ~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~~~~~~r  670 (721)
T 2xkx_A          591 RAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKA  670 (721)
T ss_pred             hcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228        175 YDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL  225 (225)
Q Consensus       175 l~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~  225 (225)
                      |++|.++|+.+.++||++|+||++++|+++|+++|..++++++|||++++|
T Consensus       671 l~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~~~~  721 (721)
T 2xkx_A          671 FDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL  721 (721)
T ss_pred             HHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeeccccC
Confidence            999987899999999999999999999999999999999999999999987

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.4e-44  Score=299.92  Aligned_cols=160  Identities=27%  Similarity=0.530  Sum_probs=144.5

Q ss_pred             CCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         49 DQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      ..++|+|+|||||||+                  |||||+||+||++|++|||+ +.++|.+++.++.|+||+++.||+|
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fv-s~~~f~~~i~~~~fle~~~~~~n~Y   96 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFI-STEEMTRNISANEFLEFGSYQGNMF   96 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceec-cHHHhhhhhhhhhhhhhhhhhceec
Confidence            4579999999999998                  89999999999999999999 9999999999999999999999999


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCH--HHHHHHHHHHHHHHHhhCCC
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTE--EQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~se--eei~~rl~~a~k~E~~~~~~  188 (225)
                      ||++++|++++++|++||||++++|++.++.....|++|||.|||++       |+++  +.+.+|++   +++..+.+.
T Consensus        97 Gt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~-------~~~e~~~~i~~r~~---~~~~~~~~~  166 (197)
T 3ney_A           97 GTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG-------TQTEALQQLQKDSE---AIRSQYAHY  166 (197)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS-------SCCHHHHHHHHHHH---HHHHHHGGG
T ss_pred             ccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc-------ccchHHHHHHHHHH---HHHHhhccC
Confidence            99999999999999999999999999999877778899999999963       5554  45555654   345667889


Q ss_pred             CcEEEECCCHHHHHHHHHHHHHhccCCceee
Q psy10228        189 FTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV  219 (225)
Q Consensus       189 fd~vI~Nddleea~~~lk~iI~~~~~~~~WV  219 (225)
                      ||++|+|||+++|+++|+.+|..++++|+||
T Consensus       167 fd~vivNd~l~~a~~~l~~ii~~~~~~pqWv  197 (197)
T 3ney_A          167 FDLSLVNNGVDETLKKLQEAFDQACSSPQWV  197 (197)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHccCCCCCC
Confidence            9999999999999999999999999999998

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=100.00  E-value=6.8e-39  Score=300.54  Aligned_cols=160  Identities=26%  Similarity=0.473  Sum_probs=135.9

Q ss_pred             cccccccccCCCCCCCCCCccEEEEccCCCCCC------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228         32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF   99 (225)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F   99 (225)
                      ..+|.|+.+..  ..++..++|||+||||+|=.            ++||| ||+||+||+||||                
T Consensus       208 ~~~~~YEeV~~--~~~~~~r~iVlsGPsG~Gl~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~F----------------  268 (468)
T 3shw_A          208 TKFPAYERVVL--REAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE-PRDAGTDQRSSGI----------------  268 (468)
T ss_dssp             CCCCSEEEEEE--ECCSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCB-C----------CB----------------
T ss_pred             ccCCCcceeEc--ccCCCCCEEEEECCCHHHHHHHHHHhCCCceeeecCC-CCCcccccccCCc----------------
Confidence            37899998876  35778899999999999821            78999 9999999999999                


Q ss_pred             EEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHHHH
Q psy10228        100 IEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKMYD  176 (225)
Q Consensus       100 iE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~rl~  176 (225)
                                  |++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|+++++|+   +++.+++|++
T Consensus       269 ------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~  336 (468)
T 3shw_A          269 ------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYE  336 (468)
T ss_dssp             ------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             ------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHH
Confidence                        8999999999999999999999999999999999999999999999999877765   4568899999


Q ss_pred             HHHHHHHhhCCCCcEEEECCCH-HHHHHHHHHHHHhccCCceeeeCC
Q psy10228        177 RSMKMEQEFGEFFTAVVQGDMP-EDIYQKVKEVIQEQSGPSIWVPSK  222 (225)
Q Consensus       177 ~a~k~E~~~~~~fd~vI~Nddl-eea~~~lk~iI~~~~~~~~WVp~~  222 (225)
                      .|.++|+.|+++||+||+||++ ++||++|+.+|..++++|+|||+.
T Consensus       337 ~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~  383 (468)
T 3shw_A          337 RSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG  383 (468)
T ss_dssp             HHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC-
T ss_pred             HHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCc
Confidence            9988899999999999999999 599999999999999999999986

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=100.00  E-value=2.7e-38  Score=290.81  Aligned_cols=160  Identities=25%  Similarity=0.470  Sum_probs=141.3

Q ss_pred             ecccccccccCCCCCCCCCCccEEEEccCCCCCC-------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCC
Q psy10228         31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT-------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNH   97 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~-------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~   97 (225)
                      ...+|.|+.+..  ..++..++|||+||||  -+             ..|||+||+||+||+|||||             
T Consensus       215 ~~~~~~YE~V~~--~~~~~~r~iVlsGPsg--~tl~~~L~~~~p~~~~~~tr~pR~gE~dG~~Y~Fv-------------  277 (391)
T 3tsz_A          215 QTKFPAYERVVL--REAGFLRPVTIFGPIA--DVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII-------------  277 (391)
T ss_dssp             --CCCSEEEEEE--EECSSCCCEEEESTTH--HHHHHHHHHHCTTTEEECCCCCCCSSSCCC--CCC-------------
T ss_pred             cccCCCcceEEC--cCCCCCCEEEEECCCH--HHHHHHHHhhCccccccccCCCCCcccCCccCCcC-------------
Confidence            457899998875  3467889999999999  23             44899999999999999998             


Q ss_pred             cEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHH
Q psy10228         98 LFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKM  174 (225)
Q Consensus        98 ~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~r  174 (225)
                                     ++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|+++++|+   +++.+++|
T Consensus       278 ---------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~  342 (391)
T 3tsz_A          278 ---------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKL  342 (391)
T ss_dssp             ---------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHH
T ss_pred             ---------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHH
Confidence                           689999999999999999999999999999999999999999999999877775   35678888


Q ss_pred             HHHHHHHHHhhCCCCcEEEECCCHH-HHHHHHHHHHHhccCCceeeeCC
Q psy10228        175 YDRSMKMEQEFGEFFTAVVQGDMPE-DIYQKVKEVIQEQSGPSIWVPSK  222 (225)
Q Consensus       175 l~~a~k~E~~~~~~fd~vI~Nddle-ea~~~lk~iI~~~~~~~~WVp~~  222 (225)
                      ++.|.++|+.|+++||++|+|||++ +||++|+.+|..++++|+|||+.
T Consensus       343 ~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~~  391 (391)
T 3tsz_A          343 YERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG  391 (391)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC-
T ss_pred             HHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccCC
Confidence            9999888999999999999999998 79999999999999999999973

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-35  Score=247.28  Aligned_cols=165  Identities=24%  Similarity=0.304  Sum_probs=146.8

Q ss_pred             CCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcc
Q psy10228         48 SDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL  109 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~  109 (225)
                      ...++|+|+||||||||                  ++|||+||++|.+|++|||+ +.++|..++..+.|+||+++.||+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~-~~~~f~~~~~~~~~le~~~~~~~~   84 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFR-SREVFEQAIKDGKMLEYAEYVGNY   84 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEe-cHHHHHHHHhcCcEEEEEEEcccc
Confidence            34678999999999998                  89999999999999999999 999999999999999999999999


Q ss_pred             eeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC
Q psy10228        110 YGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG  186 (225)
Q Consensus       110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~  186 (225)
                      |||+...|++++++|++||+|++++|+..++.....|.+||+.|||.++|++ |.+|+  +++++++|++++. .|..+.
T Consensus        85 yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~-~e~~~~  163 (208)
T 3tau_A           85 YGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAK-KEIEMM  163 (208)
T ss_dssp             EEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHH-HHHHHG
T ss_pred             CCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhh
Confidence            9999999999999999999999999998887665667899999999888876 87777  4688999999985 467778


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHHhccC
Q psy10228        187 EFFTAVVQGDMPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       187 ~~fd~vI~Nddleea~~~lk~iI~~~~~  214 (225)
                      +.||++|+||++++++.+|..+|.....
T Consensus       164 ~~~d~vivN~~~~~~~~~l~~~i~~~~~  191 (208)
T 3tau_A          164 ASYDYAVVNDVVANAVQKIKGIVETEHL  191 (208)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999987643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=100.00  E-value=9.7e-34  Score=232.24  Aligned_cols=156  Identities=24%  Similarity=0.466  Sum_probs=135.8

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      +++++|+||||||||                  +||||+||.+|.+|++|+|+ +.++|..++.++.|++++.+.+|+||
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~l~~~~~~~n~yg   83 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMYG   83 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEe-CHHHHHHHHHcCCceEEEEEcCcccc
Confidence            468999999999999                  89999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH-HHHHhhCCCCc
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM-KMEQEFGEFFT  190 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~-k~E~~~~~~fd  190 (225)
                      ++.++|++++++|++||+|++.+|++.++.....+++|||.||+.+.|   .+|  ++++ +|+.++. +++..+.+.||
T Consensus        84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l---~~R--~~~i-~r~~~~~~~~~~~~~~~~d  157 (180)
T 1kgd_A           84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPG---LNE--DESL-QRLQKESDILQRTYAHYFD  157 (180)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTT---SCC--SHHH-HHHHHHHHHHHHHHGGGCS
T ss_pred             ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHH---Hhh--HHHH-HHHHHHHHHHHHhhhCCCc
Confidence            999999999999999999999999998876545678999999997764   556  5667 5677663 34446788999


Q ss_pred             EEEECCCHHHHHHHHHHHHHhc
Q psy10228        191 AVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       191 ~vI~Nddleea~~~lk~iI~~~  212 (225)
                      ++|+||++++++++|..+|...
T Consensus       158 ~~i~n~~~~~~~~~l~~~i~~~  179 (180)
T 1kgd_A          158 LTIINNEIDETIRHLEEAVELV  179 (180)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=100.00  E-value=7.7e-32  Score=229.60  Aligned_cols=162  Identities=22%  Similarity=0.328  Sum_probs=147.9

Q ss_pred             CccEEEEccCCCCCC-------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         50 QEPFMLCYTQDDPTT-------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      +++++|+||||||||                   ++|||+||++|.+|++|+|+ +.+.|..++..|.|+||..+.|++|
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHHHhccC
Confidence            569999999999998                   68999999999999999999 9999999999999999999999999


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~  187 (225)
                      ||+.+.|++++++|++||||+|+++.+.+...-..+.+|||.|++.+.+++ |..|+  +++++.+|+.+|. .|+.+.+
T Consensus        95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~-~e~~~~~  173 (219)
T 1s96_A           95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAV-AEMSHYA  173 (219)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHH-HHHTTGG
T ss_pred             CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhhcc
Confidence            999999999999999999999999998887543346899999999999987 88877  5789999999984 5787788


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        188 FFTAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       188 ~fd~vI~Nddleea~~~lk~iI~~~~  213 (225)
                      .||++|+||++++|+.+|+.+|..+.
T Consensus       174 ~~d~~i~Nd~l~~a~~~l~~ii~~~~  199 (219)
T 1s96_A          174 EYDYLIVNDDFDTALTDLKTIIRAER  199 (219)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=100.00  E-value=1.3e-31  Score=223.06  Aligned_cols=162  Identities=25%  Similarity=0.431  Sum_probs=144.2

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      ..+|+|+||||||||                  +||||+||.+|++|.+|+|+ +.++|..++.+|.|++++++.|++||
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFV-DKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeC-CHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            468999999999998                  69999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhcc--CCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh--
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASL--YPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQE--  184 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~--~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~--  184 (225)
                      ++.++|++++++|+.||+|++++|++.++....  .+++|||.|++.+.|.+ +..|.  +++++.+|+.++. .+..  
T Consensus        91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~  169 (204)
T 2qor_A           91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELT-REMDEA  169 (204)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHHh
Confidence            999999999999999999999999988864322  35899999889998886 88887  4788999999874 3444  


Q ss_pred             hCCCCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        185 FGEFFTAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       185 ~~~~fd~vI~Nddleea~~~lk~iI~~~~  213 (225)
                      +...||++|+|+++++++++|.++|....
T Consensus       170 ~~~~~d~vi~n~~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          170 DKVGFNYFIVNDDLARTYAELREYLLGSY  198 (204)
T ss_dssp             HHHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             hhccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence            66789999999999999999999998654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.97  E-value=6.4e-30  Score=213.09  Aligned_cols=161  Identities=32%  Similarity=0.543  Sum_probs=145.1

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      .+.++|+||||||||                  +||||+|+.||++|.+|+|+ +.++|..++..+.|++++.+.+|+||
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~-~~~~~~~~i~~~~~l~~~~~~~n~~g   82 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYG   82 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEc-cHHHHHHHHHcCCCEeeeeecCccCC
Confidence            468999999999999                  78999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC--
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG--  186 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~--  186 (225)
                      ++.++|+++++.|+.|+++++++|++.+....+.|..|||.||++..|.+ +..|.  ++++|+++|..+.+ ++...  
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~-~~~~a~~  161 (198)
T 1lvg_A           83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-DMESSKE  161 (198)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-HTTGGGS
T ss_pred             CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHhhc
Confidence            99999999999999999999999998877666678889999999999887 77766  68899999988753 55555  


Q ss_pred             -CCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        187 -EFFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 -~~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                       ..||+||+|+++++++++|.++|...
T Consensus       162 ~~~~D~iivnd~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          162 PGLFDLVIINDDLDKAYATLKQALSEE  188 (198)
T ss_dssp             TTTCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHHHH
Confidence             78999999999999999999999764

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.2e-31  Score=237.87  Aligned_cols=170  Identities=22%  Similarity=0.436  Sum_probs=130.3

Q ss_pred             ecccccccccCCCCCCCCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      ...||.|+.+...  .++..+||||+||   +|+....|-..  | ..-.|-|..+   |.++|++|.||          
T Consensus       128 ~~~~~~YE~V~~~--~~~~~RPvVl~GP---~k~~l~~~L~~--~-~P~~F~~~v~---~~r~i~~~~fi----------  186 (308)
T 3kfv_A          128 QGRYPPYERVVLR--EASFKRPVVILGP---VADIAMQKLTA--E-MPDQFEIAET---VSRTDSPSKII----------  186 (308)
T ss_dssp             HHTCCSEEEEEEE--ECSSCCCEEEEST---THHHHHHHHHH--H-CTTTEEECCC---C--------CC----------
T ss_pred             cCCCcCchheecc--ccCCCCeEEEeCc---cHHHHHHHHHH--h-Cccccccccc---ccccccCCCee----------
Confidence            3578999998864  4888999999999   45510000000  0 0112223102   44458888887          


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHHHHHHHHHHHhhCC
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~rl~~a~k~E~~~~~  187 (225)
                        ++++|++++++|++|||||+++|+++|+.+.++|++|||.|||+++|+++++|+   +++.++++++.|.++|+.+++
T Consensus       187 --s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~  264 (308)
T 3kfv_A          187 --KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSH  264 (308)
T ss_dssp             --CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGG
T ss_pred             --cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence              999999999999999999999999999999999999999999999999987775   355778788888788999999


Q ss_pred             CCcEEE-ECCCHHHHHHHHHHHHHhccCCceeeeCCC
Q psy10228        188 FFTAVV-QGDMPEDIYQKVKEVIQEQSGPSIWVPSKD  223 (225)
Q Consensus       188 ~fd~vI-~Nddleea~~~lk~iI~~~~~~~~WVp~~~  223 (225)
                      +||+|| +|||+++||++|+.+|..++++|+|||++.
T Consensus       265 ~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~  301 (308)
T 3kfv_A          265 LFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQ  301 (308)
T ss_dssp             GCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred             cCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhh
Confidence            999999 899999999999999999999999999863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.94  E-value=1.1e-25  Score=185.11  Aligned_cols=161  Identities=20%  Similarity=0.319  Sum_probs=145.2

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      +.+++|+||||||||                 .++||+++.++.+|+.|+|. +...|..++..+.|++++.++++.||+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFI-DETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEec-cHHHHHHHHhcCcEEeeeeeecccccc
Confidence            468999999999999                 78999999999999999999 999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFF  189 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~f  189 (225)
                      +.+.+.++++.|++|++|++++|+..+......+..||+.||+.+.+.+ |..|.  +++++++|+.++. .+..+...+
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~~~~  164 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAR-EEMAHYKEF  164 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHH-HHHTTGGGC
T ss_pred             hHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHhcccCC
Confidence            9999999999999999999999998887655566899999999988876 88876  5678899999984 456667889


Q ss_pred             cEEEECCCHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~Nddleea~~~lk~iI~~~  212 (225)
                      |+||+|+++++++++|..+|...
T Consensus       165 d~vi~n~~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          165 DYLVVNDNFDQAVQNLIHIISAE  187 (205)
T ss_dssp             SEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.94  E-value=1e-25  Score=190.52  Aligned_cols=164  Identities=23%  Similarity=0.290  Sum_probs=131.3

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      +++++|+||||||||                  ++|||+|+.||++|.+|+|+ +.+.|..++..+.|++++.+.++.||
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFYG  105 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEe-cHHHhhhhhhcCceehhhhhccccCC
Confidence            468999999999999                  58999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhc-cCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVAS-LYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~-~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~  187 (225)
                      ++...++++++.|+.|++|++++|...++..- ..+..||+.||+.+.+.+ |..|.  +++++++|+.++.. +.++..
T Consensus       106 ~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-~~~~~~  184 (231)
T 3lnc_A          106 VPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAF-EISHCE  184 (231)
T ss_dssp             EECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHH-HHTTGG
T ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHhhhc
Confidence            99999999999999999999999988776432 234789999999998877 77775  57788889988753 555667


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHHhccCC
Q psy10228        188 FFTAVVQGDMPEDIYQKVKEVIQEQSGP  215 (225)
Q Consensus       188 ~fd~vI~Nddleea~~~lk~iI~~~~~~  215 (225)
                      .||+||+|+++++++++|..+|......
T Consensus       185 ~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          185 AYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999876544

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.92  E-value=4.9e-26  Score=204.91  Aligned_cols=154  Identities=14%  Similarity=0.182  Sum_probs=117.5

Q ss_pred             CCccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcce--EEecCHHHHHHhhhCCcEEEEEEeC
Q psy10228         49 DQEPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDY--HFVSSREQMEKDIQNHLFIEAGQYN  106 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY--~FV~s~eef~~~i~~~~FiE~~~~~  106 (225)
                      ..+||||+||+++|-.                    -++||++++.+..++.|  +|+ +++.|+..+..+.|+|     
T Consensus       141 ~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~-~~~~~e~~~~~~~~~e-----  214 (337)
T 4dey_A          141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPS-KHAIIERSNTRSSLAE-----  214 (337)
T ss_dssp             SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CCCHHH-----
T ss_pred             CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhccc-chhhhcccccccchHH-----
Confidence            4589999999999875                    23679999999999986  577 8999999999888876     


Q ss_pred             CcceeecHHHHHHHHHcCCeEEEEccHH-HHHHHHhhccCCeEEEEecCCHHHHHH-HhccCCH--HHHHHHHHHHHHHH
Q psy10228        107 DNLYGTSVASVRDVAEKGKHCILDVSGN-AIKRLQVASLYPVAIFIKPKSVESIME-MNKRMTE--EQAKKMYDRSMKME  182 (225)
Q Consensus       107 gn~YGTs~~sV~~v~~~gk~~ildv~~~-gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~se--eei~~rl~~a~k~E  182 (225)
                         |++.++.|.+++++|++|||||+++ |+++++.....|++|||.|||+++|++ |+.|+++  +.+++++++|.+ |
T Consensus       215 ---v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~-E  290 (337)
T 4dey_A          215 ---VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADK-L  290 (337)
T ss_dssp             ---HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHH-H
T ss_pred             ---HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHH-H
Confidence               6788888888999999999999998 999999887889999999999999998 9999973  345666666643 4


Q ss_pred             H-hhCCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        183 Q-EFGEFFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       183 ~-~~~~~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                      . .+.+.||+||+|||+++||.+|+.+|...
T Consensus       291 ~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~  321 (337)
T 4dey_A          291 AQCPPELFDVILDENQLEDACEHLADYLEAY  321 (337)
T ss_dssp             HHSCGGGCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred             HhhCcccCCEEEECCCHHHHHHHHHHHHHHH
Confidence            4 45899999999999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.90  E-value=1.9e-22  Score=170.34  Aligned_cols=165  Identities=26%  Similarity=0.409  Sum_probs=143.7

Q ss_pred             CCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         49 DQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      .+++++|+||||||||                  ++|||+|+.++.+|++|.|. +.+.|..++..+.|++++.+.++.|
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~  100 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI-DKTIFEDKLKNEDFLEYDNYANNFY  100 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEEC-CHHHHHHhhhccchhhhhhcccccC
Confidence            3568999999999999                  57899999999999999999 9999999998999999999999999


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhc--cCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhh
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVAS--LYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~--~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~  185 (225)
                      |++..+++++++.++.+++++++.|.++++.+-  ..|..||+.+|++..|.+ +..+.  +++.+.+++.++.+ +..+
T Consensus       101 g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~~  179 (218)
T 1z6g_A          101 GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-ELHE  179 (218)
T ss_dssp             EEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-HHHH
T ss_pred             CCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHh
Confidence            999999999999999999999999988776543  345889999999999887 77776  57889999988743 4444


Q ss_pred             C--CCCcEEEECCCHHHHHHHHHHHHHhccCC
Q psy10228        186 G--EFFTAVVQGDMPEDIYQKVKEVIQEQSGP  215 (225)
Q Consensus       186 ~--~~fd~vI~Nddleea~~~lk~iI~~~~~~  215 (225)
                      .  ..||.||+|+++++++..+..+|......
T Consensus       180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~~~~~  211 (218)
T 1z6g_A          180 ANLLNFNLSIINDDLTLTYQQLKNYLLNSYIH  211 (218)
T ss_dssp             HTTSCCSEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             hcccCCCEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            4  68999999999999999999999876543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.87  E-value=1.4e-21  Score=160.52  Aligned_cols=162  Identities=28%  Similarity=0.402  Sum_probs=119.5

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      ...|+|+||||||||                  +++||+|+.++.+|.+|+|. +.+.|..++..+.++++..+.+++||
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFK-TRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEc-CHHHHHHHHHcCCeEEEEeECCeecC
Confidence            468999999999998                  67889999899999999999 89999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~  188 (225)
                      ++.+.++++++.|+.||+|+...+...++..-..+++||+.||+.+.+.+ +..|.  +++++.+|+..... +..+...
T Consensus        85 ~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~-~~~~~~~  163 (207)
T 2j41_A           85 TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARK-EVEMMNL  163 (207)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------C-GGGGGGG
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcccc
Confidence            99999999999999999999888776666432245889999888777665 77775  45677778776532 3344567


Q ss_pred             CcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        189 FTAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       189 fd~vI~Nddleea~~~lk~iI~~~~  213 (225)
                      +|++|.|+++++++++|.++|....
T Consensus       164 ~d~vI~n~~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          164 YDYVVVNDEVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             CSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHhh
Confidence            8999999999999999999997653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.73  E-value=3.7e-16  Score=129.93  Aligned_cols=161  Identities=22%  Similarity=0.270  Sum_probs=132.8

Q ss_pred             CCCccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC--c
Q psy10228         48 SDQEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND--N  108 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g--n  108 (225)
                      ..+++++|+||||||||                 ++|+|+|+.++.+|+.|.|. +...|..+...+.|+++..+.+  +
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~~~~~~~~~l~~~~~~~~n~~   96 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLH   96 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEec-CHHHHHHHHhcCCceeehhhcCchh
Confidence            34678999999999999                 67899999889999999999 8999999999999999998888  8


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF  185 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~  185 (225)
                      +||++...+++.++++..|+++++..|+..+........++++..|+...|.+ +..+.+  +..+++++....+ ++..
T Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~-~l~~  175 (207)
T 1znw_A           97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI-ELAA  175 (207)
T ss_dssp             EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH-HHHG
T ss_pred             hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhh
Confidence            99999999999999999999999998887665443445789999999888877 777653  5566767766632 4433


Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHH
Q psy10228        186 GEFFTAVVQGDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       186 ~~~fd~vI~Nddleea~~~lk~iI~  210 (225)
                      ...++.+++++|++++......++-
T Consensus       176 ~~g~tvi~vtHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          176 QGDFDKVVVNRRLESACAELVSLLV  200 (207)
T ss_dssp             GGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred             hccCcEEEECCCHHHHHHHHHHHHH
Confidence            4568999999999999988887765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.13  E-value=6e-12  Score=110.40  Aligned_cols=160  Identities=12%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC-----CcEEEEE-EeCCcceee-cHHHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN-----HLFIEAG-QYNDNLYGT-SVASVRDVAE  122 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~-----~~FiE~~-~~~gn~YGT-s~~sV~~v~~  122 (225)
                      ...|+|+||||||||+...+-..  +. +..+.+| |.+.+......     ..|.+|. .+.+++||+ ....|++.++
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~--~~-~~~~~~I-s~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE--ET-QGNVIVI-DNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH--HT-TTCCEEE-CTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--Hh-CCCeEEE-echHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            46899999999999932222110  01 1245677 65555422111     0144433 445789998 5677888999


Q ss_pred             cCCeEEEEccHHHHH---HHHh-h-c-cCC--eEEEEecCCHHHH---HHH---------hccCCH----HHHHHHHHHH
Q psy10228        123 KGKHCILDVSGNAIK---RLQV-A-S-LYP--VAIFIKPKSVESI---MEM---------NKRMTE----EQAKKMYDRS  178 (225)
Q Consensus       123 ~gk~~ildv~~~gvk---~L~~-~-~-~~P--i~IFI~pps~~~L---~~L---------~~R~se----eei~~rl~~a  178 (225)
                      .|+.+|+|.+..+..   .+.. . . -++  +++|+.||+...+   +++         ..|.++    +.+.+++..+
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a  188 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTN  188 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence            999999998876643   2211 1 1 134  4566677776643   344         245542    3456677777


Q ss_pred             HHHHHhhCCCCcEEEECCCH--------HHHHHHHHHHHHhccC
Q psy10228        179 MKMEQEFGEFFTAVVQGDMP--------EDIYQKVKEVIQEQSG  214 (225)
Q Consensus       179 ~k~E~~~~~~fd~vI~Nddl--------eea~~~lk~iI~~~~~  214 (225)
                      . .|+.....||++++||+.        +.+...+..+|..+..
T Consensus       189 ~-~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~  231 (287)
T 1gvn_B          189 L-ETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN  231 (287)
T ss_dssp             H-HHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHS
T ss_pred             H-HHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHc
Confidence            4 366667899999999864        6777788888877654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.96  E-value=7.1e-11  Score=106.55  Aligned_cols=69  Identities=13%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHH-HHhhhCCcEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQM-EKDIQNHLFIEAG  103 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef-~~~i~~~~FiE~~  103 (225)
                      .+|+|+||+|||||                          ++||++|+..|.+|+.|||+ +..++ ......+.|    
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhli-di~~~~~e~~s~~~F----  115 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLL-GEVDPARGELTPADF----  115 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESS-SCBCGGGCCCCHHHH----
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeec-cccCcccCccCHHHH----
Confidence            47999999999999                          78999999999999999999 66555 333333333    


Q ss_pred             EeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228        104 QYNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       104 ~~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                            .-.-.+.|+++...|+.+|+.
T Consensus       116 ------~~~a~~~i~~i~~~g~~pIlv  136 (339)
T 3a8t_A          116 ------RSLAGKAVSEITGRRKLPVLV  136 (339)
T ss_dssp             ------HHHHHHHHHHHHHTTCEEEEE
T ss_pred             ------HHHHHHHHHHHHhcCCeEEEE
Confidence                  334467788888899988875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.91  E-value=4.4e-11  Score=110.29  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      .+|+|+||||||||                          ++||++|+++|.+|++|||+ +..+|...+..+.|++++ 
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhli-d~~~~~~~~s~~~F~~~a-   80 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM-NHVDWSEEYYSHRFETEC-   80 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESC-SCBCTTSCCCHHHHHHHH-
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcC-CccChHhHhhHHHHHHHH-
Confidence            47899999999998                          78999999999999999999 788888888888887776 


Q ss_pred             eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228        105 YNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                               ...|+++.++|+++||.
T Consensus        81 ---------~~~i~~i~~~g~~pilV   97 (409)
T 3eph_A           81 ---------MNAIEDIHRRGKIPIVV   97 (409)
T ss_dssp             ---------HHHHHHHHTTTCEEEEE
T ss_pred             ---------HHHHHHHHhcCCCEEEE
Confidence                     78899999999998874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.87  E-value=9.5e-11  Score=104.95  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      .+|+|+||||||||                          ++||++|+++|.+|++|||+ +..+|.+.+..        
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhli-d~~~~~e~~s~--------   74 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLI-DIKDPSESFSV--------   74 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESS-SCBCTTSCCCH--------
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEe-ccCChhhhccH--------
Confidence            47899999999999                          88999999999999999999 77777765444        


Q ss_pred             eCCcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228        105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNA  135 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~g  135 (225)
                        |.+++...+.|+++.++|+++||. .+.|
T Consensus        75 --~~F~~~a~~~i~~i~~~gk~pIlV-GGTg  102 (322)
T 3exa_A           75 --ADFQDLATPLITEIHERGRLPFLV-GGTG  102 (322)
T ss_dssp             --HHHHHHHHHHHHHHHHTTCEEEEE-SCCH
T ss_pred             --HHHHHHHHHHHHHHHhCCCcEEEE-cCcH
Confidence              456778899999999999998875 4444

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.81  E-value=1.4e-10  Score=103.65  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=59.8

Q ss_pred             CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228         50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG  103 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~  103 (225)
                      ..+|+|+||||||||                          ++||++|+++|.+|++|||+ +..+|.+....       
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhli-d~~~~~e~~s~-------   81 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL-DIRDPSQAYSA-------   81 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTSCCCH-------
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEe-ccCCccccccH-------
Confidence            357899999999999                          78999999999999999999 77777654333       


Q ss_pred             EeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228        104 QYNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       104 ~~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                         |+++......|+++.++|+.+||.
T Consensus        82 ---~~f~~~a~~~i~~i~~~g~~pilV  105 (316)
T 3foz_A           82 ---ADFRRDALAEMADITAAGRIPLLV  105 (316)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ---HHHHHHHHHHHHHHHhCCCcEEEE
Confidence               466788889999999999998865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.65  E-value=8.7e-08  Score=74.83  Aligned_cols=154  Identities=10%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC--C----ccee--ecHHHHHHHH-
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN--D----NLYG--TSVASVRDVA-  121 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~--g----n~YG--Ts~~sV~~v~-  121 (225)
                      .+|+|+||+|||||+...+-    +.-|  |.++...+.+......+. ..+..+.  .    ..||  .....+.+.+ 
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L----~~~g--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL----KERG--AKVIVMSDVVRKRYSIEA-KPGERLMDFAKRLREIYGDGVVARLCVEELG   74 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH----HHTT--CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHH----HHCC--CcEEEHhHHHHHHHHhcC-CChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            36899999999999443332    2234  334412344444332221 1111100  0    0022  1233345555 


Q ss_pred             -HcCCeEEEEc--cHHHHHHHHhhccCC-eEEEEecCCHHHHH-HHhccC------CHHHHHHHHHHHHHH-HHhhCCCC
Q psy10228        122 -EKGKHCILDV--SGNAIKRLQVASLYP-VAIFIKPKSVESIM-EMNKRM------TEEQAKKMYDRSMKM-EQEFGEFF  189 (225)
Q Consensus       122 -~~gk~~ildv--~~~gvk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~------seeei~~rl~~a~k~-E~~~~~~f  189 (225)
                       ..++.+|+|-  .+..+..|....-.| .+|||.+|. +.+. ++..|.      +.+++.+++.+.... ...+....
T Consensus        75 ~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~a  153 (179)
T 3lw7_A           75 TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPP-KIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMA  153 (179)
T ss_dssp             SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCH-HHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred             hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCH-HHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhC
Confidence             6678888883  334444454332234 678888865 5554 477665      356777776543221 12344678


Q ss_pred             cEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      |++|.|+ ++++++++|..++...
T Consensus       154 d~vId~~~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          154 DYIITNDSNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHH
Confidence            9999988 8999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.62  E-value=5e-08  Score=80.44  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             HHHHHHHHc---CCeEEEE---ccHHHHHHHHh----hccCC-eEEEEecCCHHHHHHHhcc------------------
Q psy10228        115 ASVRDVAEK---GKHCILD---VSGNAIKRLQV----ASLYP-VAIFIKPKSVESIMEMNKR------------------  165 (225)
Q Consensus       115 ~sV~~v~~~---gk~~ild---v~~~gvk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R------------------  165 (225)
                      ..+.+.+..   ++.+|+|   .+...+..+..    .+..| .+||+.+|.-..++++..|                  
T Consensus        66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~  145 (216)
T 3dl0_A           66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPK  145 (216)
T ss_dssp             HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred             HHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCc
Confidence            444555543   7889999   44444444432    23345 7888888764444557766                  


Q ss_pred             ---------------C--CHHHHHHHHHHHHHHHHhhCCC-----CcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        166 ---------------M--TEEQAKKMYDRSMKMEQEFGEF-----FTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       166 ---------------~--seeei~~rl~~a~k~E~~~~~~-----fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                                     .  +++.+++|+....+.-.....+     ..++|.|+ ++++++++|..+|...
T Consensus       146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~  215 (216)
T 3dl0_A          146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL  215 (216)
T ss_dssp             STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred             ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence                           2  4788999998764322211111     23566655 7999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.59  E-value=4.3e-08  Score=80.66  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=60.2

Q ss_pred             HHHHHHHHc---CCeEEEE---ccHHHHHHHHh----hccCC-eEEEEecCCHHHHHHHhcc------------------
Q psy10228        115 ASVRDVAEK---GKHCILD---VSGNAIKRLQV----ASLYP-VAIFIKPKSVESIMEMNKR------------------  165 (225)
Q Consensus       115 ~sV~~v~~~---gk~~ild---v~~~gvk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R------------------  165 (225)
                      ..+.+.+..   ++.+|+|   .+......+..    .+..| .+|||.+|.-..++++.+|                  
T Consensus        66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~  145 (216)
T 3fb4_A           66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPA  145 (216)
T ss_dssp             HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred             HHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCC
Confidence            444555543   7788998   44444444432    22335 7888888754444457777                  


Q ss_pred             -----------------CCHHHHHHHHHHHHHHHHh----hC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        166 -----------------MTEEQAKKMYDRSMKMEQE----FG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       166 -----------------~seeei~~rl~~a~k~E~~----~~-~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                                       .+++.+++|+....+.-..    |. .....+|.|+ ++++++++|..+|...
T Consensus       146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~  215 (216)
T 3fb4_A          146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL  215 (216)
T ss_dssp             STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred             cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence                             1467889999876432211    21 1234566655 7999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.49  E-value=1.3e-08  Score=87.29  Aligned_cols=103  Identities=8%  Similarity=0.099  Sum_probs=66.3

Q ss_pred             cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe
Q psy10228         52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY  105 (225)
Q Consensus        52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~  105 (225)
                      +|+|+||+|||||                          +++|++|++.|..|..|+|+ +..++..    +.      +
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~-~~~~~~~----~~------~   71 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYL-DSRPLTE----GI------L   71 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECS-CCCCGGG----CS------C
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEE-eeecccc----cc------c
Confidence            6899999999998                          46789999999999999999 5433221    00      1


Q ss_pred             C-CcceeecHHHHHHHHHcCCeEEEEccH-HHHHHHHhh-----ccCCeEEEEecCCHHHHHH-HhccC
Q psy10228        106 N-DNLYGTSVASVRDVAEKGKHCILDVSG-NAIKRLQVA-----SLYPVAIFIKPKSVESIME-MNKRM  166 (225)
Q Consensus       106 ~-gn~YGTs~~sV~~v~~~gk~~ildv~~-~gvk~L~~~-----~~~Pi~IFI~pps~~~L~~-L~~R~  166 (225)
                      . +.+.-.....+ +++++|+.+|++... .-++.+...     ++...+||+.+|..+.+.+ +.+|.
T Consensus        72 ~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           72 DAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             CHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            1 11222345666 666789988887543 222322211     1223789999998666654 66654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.47  E-value=1.8e-07  Score=79.08  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=83.5

Q ss_pred             CccEEEEccCCCCCC----------C-----cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEE---eCCcce
Q psy10228         50 QEPFMLCYTQDDPTT----------E-----DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQ---YNDNLY  110 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~----------s-----~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~---~~gn~Y  110 (225)
                      +.+|+|.||+||||+          .     .+||.|+..+          ..+.+.+.+.++..+ .+..   |..+.+
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~----------~g~~i~~~~~~~~~~~~~~~~ll~~a~r~   95 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVP----------TGEEIRKIVLEGNDMDIRTEAMLFAASRR   95 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCH----------HHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCc----------hHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            468999999999998          2     3566664321          134566666666531 1110   112233


Q ss_pred             eecHHHHHHHHHcCCeEEEE---------------ccHHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC-----
Q psy10228        111 GTSVASVRDVAEKGKHCILD---------------VSGNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM-----  166 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ild---------------v~~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~-----  166 (225)
                      ....+.|...+++|+.+|+|               ++...+..|..   ....| .+||+..|--..++++.+|.     
T Consensus        96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr  175 (229)
T 4eaq_A           96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR  175 (229)
T ss_dssp             HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred             HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence            33333456778899999999               23333333432   22455 67888876433334476663     


Q ss_pred             -C--HHHHHHHHHHHHHHHHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        167 -T--EEQAKKMYDRSMKMEQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       167 -s--eeei~~rl~~a~k~E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                       .  ..++.+++..+.. +..-. +....+|.++ +++++.++|.++|...
T Consensus       176 ~e~~~~~~~~rv~~~y~-~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          176 LDQEDLKFHEKVIEGYQ-EIIHNESQRFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             CCHHHHHHHHHHHHHHH-HHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence             1  2344555555431 22111 1122445544 7999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.47  E-value=3.3e-09  Score=88.21  Aligned_cols=155  Identities=18%  Similarity=0.228  Sum_probs=84.6

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCC-CCCCCCCCcce-------EEecCHHHHHHhhh---------
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRA-RREYEVDGRDY-------HFVSSREQMEKDIQ---------   95 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp-~R~~E~dG~dY-------~FV~s~eef~~~i~---------   95 (225)
                      ...|+|+||+|||||                 ..++|. ++.++..|..+       .++ +.+.|...++         
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV-PDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHSHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcC-CHHHHHHHHHHHHhhcccc
Confidence            357999999999999                 123443 23333333321       145 5555555442         


Q ss_pred             CCcEEEEEEeCCcceeecHHHHHHHHHcC----CeEEEEccHHH-HHHHHhhccC-----CeEEEEecCCHHHHHH-Hhc
Q psy10228         96 NHLFIEAGQYNDNLYGTSVASVRDVAEKG----KHCILDVSGNA-IKRLQVASLY-----PVAIFIKPKSVESIME-MNK  164 (225)
Q Consensus        96 ~~~FiE~~~~~gn~YGTs~~sV~~v~~~g----k~~ildv~~~g-vk~L~~~~~~-----Pi~IFI~pps~~~L~~-L~~  164 (225)
                      .+.+|-.    |  |..+.+.++...+.|    .++.||+++.- ++++..+...     .+.+|+.||+.+.+.+ |..
T Consensus        84 ~~~~vid----g--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~  157 (222)
T 1zak_A           84 ENGWLLD----G--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQ  157 (222)
T ss_dssp             HTCEEEE----S--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBC
T ss_pred             CCcEEEE----C--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCccccccccccc
Confidence            2333222    2  223334455444333    35567777754 3444433332     3567788888665543 555


Q ss_pred             cC--CHHHHHHHHHHHHHHHHhhCCC---CcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        165 RM--TEEQAKKMYDRSMKMEQEFGEF---FTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       165 R~--seeei~~rl~~a~k~E~~~~~~---fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      |.  .++.+++|+..+.+.-......   ...+|.++ ++++++++|..+|..
T Consensus       158 r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~  210 (222)
T 1zak_A          158 RFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGS  210 (222)
T ss_dssp             CTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHh
Confidence            54  3567888887764211111112   23455544 799999999998865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.42  E-value=3.5e-07  Score=73.01  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=77.0

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHh-h-hCCcEEEEEEeCC------cceeecH-HHHHHHH
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKD-I-QNHLFIEAGQYND------NLYGTSV-ASVRDVA  121 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~-i-~~~~FiE~~~~~g------n~YGTs~-~sV~~v~  121 (225)
                      ..|+|+||+|||||+..-.-...-...|.+|.|+ +-.++... + ..|.+..+.++..      ..++... +.+... 
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-   81 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV-SFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEM-   81 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE-ehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhh-
Confidence            4799999999999922111110001246778898 65554322 2 2232222221111      0111111 113332 


Q ss_pred             HcCCeEEEEccHH-----HH------HHHHhhccCCeEEEEecCCHHHHH-HHhc--cC----CHHHHHHHHHHHHHHH-
Q psy10228        122 EKGKHCILDVSGN-----AI------KRLQVASLYPVAIFIKPKSVESIM-EMNK--RM----TEEQAKKMYDRSMKME-  182 (225)
Q Consensus       122 ~~gk~~ildv~~~-----gv------k~L~~~~~~Pi~IFI~pps~~~L~-~L~~--R~----seeei~~rl~~a~k~E-  182 (225)
                      ..+..+|+|..+.     +.      ..++.. ....+|||.+|....++ ++..  |.    +.+++..+........ 
T Consensus        82 ~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~  160 (192)
T 1kht_A           82 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAM  160 (192)
T ss_dssp             HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence            3466788875321     11      222221 12378999987644454 5765  54    2344433322221111 


Q ss_pred             --HhhCCCCcEEEECCC--HHHHHHHHHHHH
Q psy10228        183 --QEFGEFFTAVVQGDM--PEDIYQKVKEVI  209 (225)
Q Consensus       183 --~~~~~~fd~vI~Ndd--leea~~~lk~iI  209 (225)
                        ..+.....++|.|.+  +++++++|.++|
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          161 SYGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence              123244456667877  999999998876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.41  E-value=1.6e-07  Score=79.73  Aligned_cols=142  Identities=12%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCC-CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRAR-REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~-R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      ..|+|+||+||||+                 ..++|.. +.++.         .-.++.+.+.+|.++.+.        +
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---------~g~~i~~~~~~g~~~~~~--------~   92 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---------LGLKIKNIINEGKLVDDQ--------M   92 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---------HHHHHHHHHHTTCCCCHH--------H
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---------HHHHHHHHHhcCCCCcHH--------H
Confidence            46999999999999                 2344432 11111         123556666777765432        2


Q ss_pred             cHHHHHHHHHc---CCeEEEEccHHHHHHHHh-------hccCC-eEEEEecCCHHHHHHHhccC---------------
Q psy10228        113 SVASVRDVAEK---GKHCILDVSGNAIKRLQV-------ASLYP-VAIFIKPKSVESIMEMNKRM---------------  166 (225)
Q Consensus       113 s~~sV~~v~~~---gk~~ildv~~~gvk~L~~-------~~~~P-i~IFI~pps~~~L~~L~~R~---------------  166 (225)
                      -..-+...+..   ++.+|+|..+..+.....       .+..| .+|++.+|.-..++++.+|.               
T Consensus        93 ~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~p  172 (243)
T 3tlx_A           93 VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNP  172 (243)
T ss_dssp             HHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBC
T ss_pred             HHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCC
Confidence            23334444443   778999976655433321       22445 67777776533344576552               


Q ss_pred             --------------------CHHHHHHHHHHHHHHHH-----hhCC-CCcEEEEC-CCHHHHHHHHHHHHH
Q psy10228        167 --------------------TEEQAKKMYDRSMKMEQ-----EFGE-FFTAVVQG-DMPEDIYQKVKEVIQ  210 (225)
Q Consensus       167 --------------------seeei~~rl~~a~k~E~-----~~~~-~fd~vI~N-ddleea~~~lk~iI~  210 (225)
                                          +++.+++|+..+.+ +.     .|.. ..-.+|.+ .++++++++|..+|.
T Consensus       173 p~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~-~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          173 PKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKS-ETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH-HTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CcccCccccccccccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                                46889999998753 21     1111 11233443 379999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.36  E-value=7e-06  Score=64.25  Aligned_cols=141  Identities=7%  Similarity=0.010  Sum_probs=73.5

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV  131 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv  131 (225)
                      .|+|+||+|||||+...+-..   .  -.|.|+ +.+.|.....   ++           ...-+....+..|..+|.|.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~---~--l~~~~i-~~d~~~~~~~---~~-----------~~~~~~~~~l~~~~~vi~dr   62 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK---E--LKYPII-KGSSFELAKS---GN-----------EKLFEHFNKLADEDNVIIDR   62 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH---H--HCCCEE-ECCCHHHHTT---CH-----------HHHHHHHHHHTTCCSEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHH---H--hCCeee-cCcccccchh---HH-----------HHHHHHHHHHHhCCCeEEee
Confidence            689999999999932221110   0  025666 4455544332   00           00001233456677777774


Q ss_pred             cHHH------------------HHHHHhhccCC-eEEEEecCCHHHHHH-HhccCC---HHHHHHHHHHHH-HHHHhhCC
Q psy10228        132 SGNA------------------IKRLQVASLYP-VAIFIKPKSVESIME-MNKRMT---EEQAKKMYDRSM-KMEQEFGE  187 (225)
Q Consensus       132 ~~~g------------------vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~s---eeei~~rl~~a~-k~E~~~~~  187 (225)
                      ...+                  ...+......| .+||+.+| .+++.+ +..|..   +.+..+++..+. +....+ .
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~-~  140 (173)
T 3kb2_A           63 FVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNA-G  140 (173)
T ss_dssp             CHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTC-S
T ss_pred             eecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhc-C
Confidence            3221                  11222111234 67888875 565554 665431   223333443332 112222 3


Q ss_pred             CCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228        188 FFTAVVQGD--MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       188 ~fd~vI~Nd--dleea~~~lk~iI~~~~~  214 (225)
                      ..+.+|.++  +++++.++|...+....+
T Consensus       141 ~~~~~id~~~~~~~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          141 LHTYSWDTGQWSSDEIAKDIIFLVELEHH  169 (173)
T ss_dssp             SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence            456677765  799999999999987543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.34  E-value=3.6e-07  Score=73.45  Aligned_cols=102  Identities=13%  Similarity=0.196  Sum_probs=58.4

Q ss_pred             eeecHHHHHHHHHcCCeEEEEccHHHHHH---HHhhccCC-eEEEEecCCHHHHH-HHhccC--------CHHHHHHHHH
Q psy10228        110 YGTSVASVRDVAEKGKHCILDVSGNAIKR---LQVASLYP-VAIFIKPKSVESIM-EMNKRM--------TEEQAKKMYD  176 (225)
Q Consensus       110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~---L~~~~~~P-i~IFI~pps~~~L~-~L~~R~--------seeei~~rl~  176 (225)
                      +..-.+.|...+..|..+|+|..+.++..   +...-..| .+|||.+|. +.+. ++..|.        +++.+.+|+.
T Consensus        74 ~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~r~~  152 (196)
T 2c95_A           74 LDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGP-ETMTQRLLKRGETSGRVDDNEETIKKRLE  152 (196)
T ss_dssp             HHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCH-HHHHHHHHHHHTSSSCGGGSHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH-HHHHHHHHccCCcCCCCCCCHHHHHHHHH
Confidence            33444555556667899999964433322   22111234 788888864 5444 465542        3567777776


Q ss_pred             HHHHHHH----hhCC-CCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        177 RSMKMEQ----EFGE-FFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       177 ~a~k~E~----~~~~-~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      ...+...    .|.. .+..+|.|+ ++++++++|..+|...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          153 TYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            6532111    1221 122345554 7999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.33  E-value=8.6e-07  Score=75.82  Aligned_cols=151  Identities=9%  Similarity=0.093  Sum_probs=85.1

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhC----CcE---EEEEEe
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQN----HLF---IEAGQY  105 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~----~~F---iE~~~~  105 (225)
                      ..+|+|.|++||||+                 ..+||.|+..+.          -+.+...+..    ..+   .|+--|
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~----------g~~ir~~l~~~~~~~~~~~~~e~lLf   96 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL----------AEKLRALVKEEHPGEELQDITELLLV   96 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH----------HHHHHHHHHSCCTTSCCCHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHH----------HHHHHHHHhhCCCcccCCHHHHHHHH
Confidence            468999999999998                 357888843211          2455555531    112   111123


Q ss_pred             CCcceeecHHHHHHHHHcCCeEEEEc---------------cHHHHHHHHh---hccCC-eEEEEecCCHHHHHH-Hhcc
Q psy10228        106 NDNLYGTSVASVRDVAEKGKHCILDV---------------SGNAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKR  165 (225)
Q Consensus       106 ~gn~YGTs~~sV~~v~~~gk~~ildv---------------~~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R  165 (225)
                      ..+.|..-.+.|+..+++|+++|.|=               +.+-+..|..   ....| .+||+..|- +.+.+ +.+|
T Consensus        97 ~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~-e~~~~Ri~~R  175 (236)
T 3lv8_A           97 YAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDP-KLGLERARGR  175 (236)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhc
Confidence            34455555566777889999999992               1122233332   12456 788998864 55544 7666


Q ss_pred             CC----H---HHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228        166 MT----E---EQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       166 ~s----e---eei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~  213 (225)
                      ..    +   .+..+++..+. ++...+ +. ..+|.++ ++++..++|.++|...-
T Consensus       176 ~~~dr~E~~~~~~~~rv~~~y~~la~~~-~~-~~vIDa~~sieeV~~~I~~~l~~~l  230 (236)
T 3lv8_A          176 GELDRIEKMDISFFERARERYLELANSD-DS-VVMIDAAQSIEQVTADIRRALQDWL  230 (236)
T ss_dssp             -CCCTTTTSCHHHHHHHHHHHHHHHHHC-TT-EEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHHHC-CC-EEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            41    1   34555555543 221122 22 4555544 79999999999987643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.31  E-value=6e-07  Score=76.40  Aligned_cols=151  Identities=11%  Similarity=0.063  Sum_probs=86.8

Q ss_pred             CccEEEEccCCCCCC------------C--------cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE---EEEEEeC
Q psy10228         50 QEPFMLCYTQDDPTT------------E--------DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF---IEAGQYN  106 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------s--------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F---iE~~~~~  106 (225)
                      +.+|+|.||+||||+            .        .+||.|+..+. |         +.+.+.+.++.+   .|+-.|.
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~-g---------~~ir~~l~~~~~~~~~~~llf~   94 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRL-G---------ETLREILLNQPMDLETEALLMF   94 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHH-H---------HHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChH-H---------HHHHHHHHcCCCCHHHHHHHHH
Confidence            568999999999998            2        47888854321 2         345555555532   1222255


Q ss_pred             CcceeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC
Q psy10228        107 DNLYGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT  167 (225)
Q Consensus       107 gn~YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s  167 (225)
                      .+.|..-.+.|+..+++|+++|+|=-               .+-+..|...   ...| .+||+..|--..++++.+|..
T Consensus        95 a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~  174 (227)
T 3v9p_A           95 AGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM  174 (227)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence            66777766778888999999999831               2223333321   2456 789998764333444666641


Q ss_pred             -------HHHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        168 -------EEQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       168 -------eeei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                             ..+..+++..+. ++-..+ +.-..+|..+ ++++..++|.++|..
T Consensus       175 ~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          175 PDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence                   123444444432 111122 2234555544 799999999998875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.26  E-value=1.1e-06  Score=69.73  Aligned_cols=96  Identities=10%  Similarity=-0.004  Sum_probs=55.0

Q ss_pred             cceeecHHHHHHHHHcCCeEEEEccH-HH---HHHHHh-hccCC-eEEEEecCCHHHHHH-HhccCCH-HHHHHHHHHHH
Q psy10228        108 NLYGTSVASVRDVAEKGKHCILDVSG-NA---IKRLQV-ASLYP-VAIFIKPKSVESIME-MNKRMTE-EQAKKMYDRSM  179 (225)
Q Consensus       108 n~YGTs~~sV~~v~~~gk~~ildv~~-~g---vk~L~~-~~~~P-i~IFI~pps~~~L~~-L~~R~se-eei~~rl~~a~  179 (225)
                      ..|+.....+...++.|..+|++... ++   ...+.. ..-.+ +.||+.+ +.+++.+ +..|... ...    ..+ 
T Consensus        70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~r~~~~~~~----~~~-  143 (178)
T 1qhx_A           70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC-DGAVAEGRETARGDRVAGM----AAK-  143 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHHHHTSSSCTTH----HHH-
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEEC-CHHHHHHHHHhhCCcccch----hhh-
Confidence            34555556677888889999998743 11   111211 12235 5677876 4777765 7777631 111    111 


Q ss_pred             HHHHhhC-CCCcEEEECC--CHHHHHHHHHHHH
Q psy10228        180 KMEQEFG-EFFTAVVQGD--MPEDIYQKVKEVI  209 (225)
Q Consensus       180 k~E~~~~-~~fd~vI~Nd--dleea~~~lk~iI  209 (225)
                      ..+..+. ..+|++|.++  ++++++++|.+.+
T Consensus       144 ~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          144 QAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             HTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             hchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence            1122221 3489999865  6889888887654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.24  E-value=1.5e-08  Score=90.74  Aligned_cols=69  Identities=9%  Similarity=0.054  Sum_probs=51.4

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      ..|+|+||+|||||                          ++||++|+++|.+|+.|||+ +..++......+.      
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~li-d~~~~~~~~~~~~------   78 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLI-DIRDPAESYSAAE------   78 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTSCCCHHH------
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEe-eccCcccccCHHH------
Confidence            47999999999999                          67999999999999999999 5544433222222      


Q ss_pred             eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228        105 YNDNLYGTSVASVRDVAEKGKHCILD  130 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~~~gk~~ild  130 (225)
                          +.-.....|++++++|+.+|+.
T Consensus        79 ----F~~~a~~~i~~i~~~g~~~Ilv  100 (323)
T 3crm_A           79 ----FRADALAAMAKATARGRIPLLV  100 (323)
T ss_dssp             ----HHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ----HHHHHHHHHHHHHHcCCeEEEE
Confidence                2233467788888888877764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.22  E-value=5.9e-07  Score=73.25  Aligned_cols=96  Identities=9%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             HHHHHHHHcCCeEEEEcc---------------HHHHHHHHhhccCC-eEEEEecCCHHHHHH-Hhcc---CCHHHHHHH
Q psy10228        115 ASVRDVAEKGKHCILDVS---------------GNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKR---MTEEQAKKM  174 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R---~seeei~~r  174 (225)
                      +.+...+.+|..+|+|-.               ...+..+......| .+||+.+| .+++.+ +.+|   ....++.++
T Consensus        84 ~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~~~~~~~~  162 (215)
T 1nn5_A           84 PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQER  162 (215)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCSHHHHHH
T ss_pred             HHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccchHHHHHH
Confidence            457777788999999832               22222222111234 78888876 455544 5433   222345555


Q ss_pred             HHHHHHHHHhhCCCCc-EEEECC-CHHHHHHHHHHHHHhc
Q psy10228        175 YDRSMKMEQEFGEFFT-AVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       175 l~~a~k~E~~~~~~fd-~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      +..... +.......+ .+|.|+ ++++++++|..+|...
T Consensus       163 ~~~~~~-~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~  201 (215)
T 1nn5_A          163 ALRCFH-QLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA  201 (215)
T ss_dssp             HHHHHH-HHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            554421 111111234 556554 7999999998888653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.21  E-value=3.2e-07  Score=74.35  Aligned_cols=93  Identities=13%  Similarity=0.110  Sum_probs=53.3

Q ss_pred             HHHHHHHHcCCeEEEEcc--------------HHHHHHHHhhccCC-eEEEEecCCHHHHHHHhccCC--H--HHHHHHH
Q psy10228        115 ASVRDVAEKGKHCILDVS--------------GNAIKRLQVASLYP-VAIFIKPKSVESIMEMNKRMT--E--EQAKKMY  175 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~--------------~~gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~s--e--eei~~rl  175 (225)
                      +.|...+.+|..+|+|-.              ...+..+......| .+||+.+| .+.+.+  +|..  .  .++.+++
T Consensus        77 ~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~--~R~~d~~e~~~~~~rl  153 (204)
T 2v54_A           77 SFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR--NVGEEIYEDVTFQQKV  153 (204)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT--CCSSSTTCCSHHHHHH
T ss_pred             HHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh--hcCcccccHHHHHHHH
Confidence            456777788999998832              22233333222244 67888876 455544  4532  1  2666677


Q ss_pred             HHHHHHHHhhCCCCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228        176 DRSMKMEQEFGEFFT-AVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       176 ~~a~k~E~~~~~~fd-~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      ..+.. +.......+ .+|.|+ ++++++++|.++|..
T Consensus       154 ~~~y~-~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~  190 (204)
T 2v54_A          154 LQEYK-KMIEEGDIHWQIISSEFEEDVKKELIKNIVIE  190 (204)
T ss_dssp             HHHHH-HHHTTCSSCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHhCCCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            65432 221112234 445444 799999999888865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.13  E-value=1.3e-06  Score=69.92  Aligned_cols=151  Identities=8%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHH-HHHHHHcCCeEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVAS-VRDVAEKGKHCI  128 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~s-V~~v~~~gk~~i  128 (225)
                      ..|+|+||+|||||+..-+-.+   .  -.|.|+ +.+++..........++....| .+|...... +..+.. ...++
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~---~--l~~~~i-~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v   78 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK---L--TKRILY-DSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCK-LDNII   78 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH---H--HCCCEE-EHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHH---H--hCCCEE-EChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHh-cCCcE
Confidence            4799999999999922111100   0  035677 6676655443322221111111 334333323 333333 34455


Q ss_pred             EEcc------HHHHHHHHhhccCCeEEEEecCCHHHHHH-H--hc---cC--CHHHHHHHHHHHH-HHHHhhCCCCcEEE
Q psy10228        129 LDVS------GNAIKRLQVASLYPVAIFIKPKSVESIME-M--NK---RM--TEEQAKKMYDRSM-KMEQEFGEFFTAVV  193 (225)
Q Consensus       129 ldv~------~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L--~~---R~--seeei~~rl~~a~-k~E~~~~~~fd~vI  193 (225)
                      +.+.      ......|+..   ..+||+.+| .+++.+ +  +.   |.  ++++..+++.... +-+..|...+|++|
T Consensus        79 i~~gg~~~~~~~~~~~l~~~---~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~I  154 (185)
T 3trf_A           79 LATGGGVVLDEKNRQQISET---GVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVY  154 (185)
T ss_dssp             EECCTTGGGSHHHHHHHHHH---EEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             EecCCceecCHHHHHHHHhC---CcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEE
Confidence            5542      2223333322   378999986 566654 7  33   32  2233333333321 11223444589999


Q ss_pred             ECC--CHHHHHHHHHHHHHhc
Q psy10228        194 QGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       194 ~Nd--dleea~~~lk~iI~~~  212 (225)
                      .|+  ++++++++|..+|...
T Consensus       155 dt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          155 PTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             ECTTCCHHHHHHHHHHHSCC-
T ss_pred             ECCCCCHHHHHHHHHHHHHHH
Confidence            987  4899999999887643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.11  E-value=4.3e-07  Score=81.84  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228         51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ  104 (225)
Q Consensus        51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~  104 (225)
                      .+|+|+||||||||                          +++|++|+..|.+|..|||+ +..++...+..        
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~-di~~~~~~~~~--------   78 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMI-DILPPDASFSA--------   78 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESS-SCBCTTSCCCH--------
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHH-HHhCCccccCH--------
Confidence            47999999999999                          57999999999999999998 53333221111        


Q ss_pred             eCCcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228        105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNA  135 (225)
Q Consensus       105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~g  135 (225)
                        +++.-.....+.++...|+.+|+ +.+.+
T Consensus        79 --~dF~~~a~~~i~~i~~~g~~~Il-vGGt~  106 (340)
T 3d3q_A           79 --YEFKKRAEKYIKDITRRGKVPII-AGGTG  106 (340)
T ss_dssp             --HHHHHHHHHHHHHHHHTTCEEEE-ECCCH
T ss_pred             --HHHHHHHHHHHHHHHhCCCcEEE-ECChh
Confidence              23344567778888888988776 45555

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.10  E-value=4.7e-06  Score=69.89  Aligned_cols=151  Identities=9%  Similarity=0.017  Sum_probs=83.7

Q ss_pred             CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE---EEEE---EeCC
Q psy10228         50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF---IEAG---QYND  107 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F---iE~~---~~~g  107 (225)
                      +.+|+|.|++||||+                ..+||.|+..+.          -+.+.+.+.++..   -.+.   -|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~----------g~~i~~~l~~~~~~~~~~~~~~llf~a   75 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPL----------AERIRELLLAPSDEPMAADTELLLMFA   75 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHH----------HHHHHHHHHSCCSSCCCHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHH----------HHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            568999999999998                457888743211          2345555554421   0011   1222


Q ss_pred             cceeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC-
Q psy10228        108 NLYGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT-  167 (225)
Q Consensus       108 n~YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s-  167 (225)
                      +.|..-.+.|+..+++|+++|.|=-               .+-+..|...   ...| .+||+..|--..++++.+|.. 
T Consensus        76 ~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~  155 (213)
T 4edh_A           76 ARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL  155 (213)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            3333333446667789999999831               1222333321   2456 789998864333445777641 


Q ss_pred             ---H---HHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        168 ---E---EQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       168 ---e---eei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                         +   .+..+++..+. ++...+ +.-..+|.++ ++++..++|.++|..
T Consensus       156 dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~  206 (213)
T 4edh_A          156 DRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLLPN  206 (213)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHHH
Confidence               2   24444544432 111122 2234556544 799999998888864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.09  E-value=2.7e-06  Score=69.25  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCeEEEEcc---HHHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC---CH-HHHHHHHHHHHHHHHh
Q psy10228        114 VASVRDVAEKGKHCILDVS---GNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM---TE-EQAKKMYDRSMKMEQE  184 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~---~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~---se-eei~~rl~~a~k~E~~  184 (225)
                      ...+.+.+..|..+|+|..   ......+....-.| .+||+.+| .+.+.+ +..|.   .+ +.++..+...   +.-
T Consensus        76 ~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~---~~~  151 (202)
T 3t61_A           76 LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLETL---EDP  151 (202)
T ss_dssp             HHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHHC---CCC
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHhc---CCC
Confidence            4556677778999999854   44444454322223 67888876 555554 66653   22 2222222211   111


Q ss_pred             hCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        185 FGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       185 ~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      +....+.+|.|+ ++++++++|..+|..
T Consensus       152 ~~~~~~~~Id~~~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          152 RGEVRTVAVDVAQPLAEIVREALAGLAR  179 (202)
T ss_dssp             TTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            223456777765 799999999998874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=5.9e-06  Score=67.41  Aligned_cols=152  Identities=7%  Similarity=0.043  Sum_probs=77.8

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~i  128 (225)
                      ...|+|+||+|||||+..-.-.+   .-  .|.|+ +-+++.........-+...-.| ..|......+-..+..+..+|
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~---~l--~~~~i-~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~v   98 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR---KL--NVPFI-DLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVV   98 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH---HH--TCCEE-EHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH---Hc--CCCEE-cchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcE
Confidence            45899999999999922111000   00  34566 5555443322111111000001 112222222222233456677


Q ss_pred             EEccH------HHHHHHHhhccCCeEEEEecCCHHHHH-HHh-cc---C-----CHHHHHHHHHHHHH-HHHhhCCCCcE
Q psy10228        129 LDVSG------NAIKRLQVASLYPVAIFIKPKSVESIM-EMN-KR---M-----TEEQAKKMYDRSMK-MEQEFGEFFTA  191 (225)
Q Consensus       129 ldv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~-~R---~-----seeei~~rl~~a~k-~E~~~~~~fd~  191 (225)
                      ++..+      ...+.+..   ...+||+.+|- +.+. ++. .|   .     +.+++.+++....+ .+..|.. +|+
T Consensus        99 i~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~-e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~-ad~  173 (199)
T 3vaa_A           99 ISTGGGAPCFYDNMEFMNR---TGKTVFLNVHP-DVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQ-AQY  173 (199)
T ss_dssp             EECCTTGGGSTTHHHHHHH---HSEEEEEECCH-HHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTT-SSE
T ss_pred             EECCCcEEccHHHHHHHHc---CCEEEEEECCH-HHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhh-CCE
Confidence            77543      22223321   34789999864 5555 465 22   1     34455555554432 1234545 899


Q ss_pred             EEECC--CHHHHHHHHHHHHHhc
Q psy10228        192 VVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       192 vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      +|.++  ++++++++|.+.|...
T Consensus       174 ~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          174 IFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             EEECCCCSSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHH
Confidence            99887  5899999999988764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.05  E-value=6e-07  Score=73.16  Aligned_cols=95  Identities=12%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             HHHHHHHcCCeEEEEccHHH---H---------HHHHh--hc-cCC-eEEEEecCCHHHHHHHhcc---CCHHHHHHHHH
Q psy10228        116 SVRDVAEKGKHCILDVSGNA---I---------KRLQV--AS-LYP-VAIFIKPKSVESIMEMNKR---MTEEQAKKMYD  176 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~~g---v---------k~L~~--~~-~~P-i~IFI~pps~~~L~~L~~R---~seeei~~rl~  176 (225)
                      .+...+.+|..+|+|-.+.+   .         ..+..  .. ..| .+|||.+|.-..++++.+|   ...+++.+++.
T Consensus        86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~  165 (212)
T 2wwf_A           86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY  165 (212)
T ss_dssp             HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHH
Confidence            46677788999999854421   1         11110  11 234 6889887653333345433   33355666664


Q ss_pred             HHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        177 RSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       177 ~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      .+.. +. .....+.+|.|+ ++++++++|.+++...
T Consensus       166 ~~~~-~~-~~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          166 ETYK-HF-AHEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHGG-GG-TTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHH-HH-hccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            4321 11 113456777776 7999999999999765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.03  E-value=1.4e-05  Score=64.21  Aligned_cols=95  Identities=7%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             HHHHHHcCCeEEEEcc---HHHHHHHHhh-ccCCeEEEEecCCHHHHHHHhccCC--------HHHHHHHHHHHHHHHH-
Q psy10228        117 VRDVAEKGKHCILDVS---GNAIKRLQVA-SLYPVAIFIKPKSVESIMEMNKRMT--------EEQAKKMYDRSMKMEQ-  183 (225)
Q Consensus       117 V~~v~~~gk~~ildv~---~~gvk~L~~~-~~~Pi~IFI~pps~~~L~~L~~R~s--------eeei~~rl~~a~k~E~-  183 (225)
                      |...+..|..+|+|--   ......+... .....+|||.+|.-..++++..|..        .+++.+|+........ 
T Consensus        84 i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~  163 (199)
T 2bwj_A           84 MVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIP  163 (199)
T ss_dssp             HHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3334446888999832   2223333321 1123789999864333444666642        2566667655432111 


Q ss_pred             ---hhCCCCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228        184 ---EFGEFFT-AVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       184 ---~~~~~fd-~vI~Nd-dleea~~~lk~iI~~  211 (225)
                         .|...-+ ++|.|+ ++++++++|..+|..
T Consensus       164 ~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  196 (199)
T 2bwj_A          164 VIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS  196 (199)
T ss_dssp             HHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence               1221123 455554 799999999998875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.01  E-value=1.4e-05  Score=63.45  Aligned_cols=95  Identities=13%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             HHHHHHH--cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHH
Q psy10228        116 SVRDVAE--KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRS  178 (225)
Q Consensus       116 sV~~v~~--~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a  178 (225)
                      .+.+.+.  .|..+|+|-.+   .....+..   ....| .+|||.+|.-..++++..|.        +.+++.+|+...
T Consensus        73 ~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~  152 (194)
T 1qf9_A           73 LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTF  152 (194)
T ss_dssp             HHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHH
Confidence            3444443  47788888432   22222321   11234 67888876433344465442        257788887764


Q ss_pred             HHH----HHhhCCCCc--EEEECC-CHHHHHHHHHHHHHh
Q psy10228        179 MKM----EQEFGEFFT--AVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       179 ~k~----E~~~~~~fd--~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      .+.    ...+ ...|  .+|.|+ ++++++++|..++..
T Consensus       153 ~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          153 NVQTKLVIDHY-NKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHTHHHHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHH-HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            311    1112 1245  566665 799999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.99  E-value=2e-06  Score=67.91  Aligned_cols=148  Identities=8%  Similarity=0.039  Sum_probs=71.7

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE-EEeC----CcceeecHHHHHHHH---H
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA-GQYN----DNLYGTSVASVRDVA---E  122 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~-~~~~----gn~YGTs~~sV~~v~---~  122 (225)
                      ..|+|+|++|||||+...+-.+.    ...+.++ +.+.+...+..... .+ ..|.    ...+.+....+...+   .
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i-~~d~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   76 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNI-NRDDYRQSIMAHEE-RDEYKYTKKKEGIVTGMQFDTAKSILYGGD   76 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEE-CHHHHHHHHTTSCC-GGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh----cCCcEEe-cHHHHHHHhhCCCc-cchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence            36899999999999332221110    1236788 77777766543210 00 0011    123444556677788   7


Q ss_pred             cCCeEEEEccHHH---HHHHHh---hccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228        123 KGKHCILDVSGNA---IKRLQV---ASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFT  190 (225)
Q Consensus       123 ~gk~~ildv~~~g---vk~L~~---~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd  190 (225)
                      .|+.+|+|.....   ...+..   ..-+| .+|||.+| .+.+. ++..|.    +++.++++++...+ ..    .++
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~-~~----~~~  150 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSMRE-YL----GLP  150 (181)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHHHHHHHHHH-HH----TCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccccCCCCHHHHHHHHHHhhc-cC----CCC
Confidence            8999999864321   222221   11134 68899875 45554 477665    46778888877643 21    123


Q ss_pred             -EEEECCCH-HHHHHHHHHHHHh
Q psy10228        191 -AVVQGDMP-EDIYQKVKEVIQE  211 (225)
Q Consensus       191 -~vI~Nddl-eea~~~lk~iI~~  211 (225)
                       ++ +|.+. ++.+..|...+..
T Consensus       151 ~~~-id~~~~~~v~~~i~~~l~~  172 (181)
T 1ly1_A          151 VYN-GTPGKPKAVIFDVDGTLAK  172 (181)
T ss_dssp             CC---------------------
T ss_pred             ccc-cCCCCCceeeehhhhhhhc
Confidence             33 55555 6666666666554

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.95  E-value=4.9e-06  Score=66.21  Aligned_cols=154  Identities=8%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHH-HHHhh-hCCcEEEEEEeCC---cceee----cHHHHHHHH-
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQ-MEKDI-QNHLFIEAGQYND---NLYGT----SVASVRDVA-  121 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~ee-f~~~i-~~~~FiE~~~~~g---n~YGT----s~~sV~~v~-  121 (225)
                      .|+|+|++|||||+...+-...-...|..+.++ +..+ +.+.+ ..+.+..+..+..   ..+..    ....|...+ 
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            689999999999932222111111235667777 5433 33333 2222100000000   00000    011134444 


Q ss_pred             -HcCCeEEEEcc----HH-H------HHHHHhhccCC-eEEEEecCCHHHHHH-Hhc--cCC-----HHHHH--HHHHHH
Q psy10228        122 -EKGKHCILDVS----GN-A------IKRLQVASLYP-VAIFIKPKSVESIME-MNK--RMT-----EEQAK--KMYDRS  178 (225)
Q Consensus       122 -~~gk~~ildv~----~~-g------vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~--R~s-----eeei~--~rl~~a  178 (225)
                       ..|+.+|+|-.    .+ |      ...++.  +.| .+||+.+|....+++ +..  |..     .+.+.  +++..+
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~  159 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE--INPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARY  159 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHh--cCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHH
Confidence             67899999942    11 1      122332  234 678888775444545 666  642     33332  333333


Q ss_pred             HH-HHHhhCCCCcEEEE-CC--CHHHHHHHHHHHH
Q psy10228        179 MK-MEQEFGEFFTAVVQ-GD--MPEDIYQKVKEVI  209 (225)
Q Consensus       179 ~k-~E~~~~~~fd~vI~-Nd--dleea~~~lk~iI  209 (225)
                      .. ....+.+ .+++++ |+  ++++++++|.++|
T Consensus       160 ~~~~~~~~~~-~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          160 AATASAVLAG-STVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHT-CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence            21 1111212 344455 55  4999999998876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.91  E-value=2.4e-05  Score=63.14  Aligned_cols=93  Identities=13%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             HHHHHHcCCeEEEEccHHH--------------HHHHHhhccCC-eEEEEecCCHHHHHHHh-ccC--CH----------
Q psy10228        117 VRDVAEKGKHCILDVSGNA--------------IKRLQVASLYP-VAIFIKPKSVESIMEMN-KRM--TE----------  168 (225)
Q Consensus       117 V~~v~~~gk~~ildv~~~g--------------vk~L~~~~~~P-i~IFI~pps~~~L~~L~-~R~--se----------  168 (225)
                      |...+..|..+|+|-.+..              +..+......| .+||+.+|.-..++++. +|.  +.          
T Consensus        79 i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~  158 (213)
T 2plr_A           79 ILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPG  158 (213)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTT
T ss_pred             HHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccc
Confidence            4556678999999964322              22232211124 67888876433344576 665  11          


Q ss_pred             -------HHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        169 -------EQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       169 -------eei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                             +++.+++..... +. ...+-+.+|.++ ++++.+++|..+|..
T Consensus       159 ~d~~e~~~~~~~r~~~~~~-~~-~~~~~~~~Id~~~~~e~v~~~I~~~l~~  207 (213)
T 2plr_A          159 LSPEEGFLKYQGLITEVYD-KL-VKDENFIVIDGTKTPKEIQIQIRKFVGE  207 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHHH-HH-TTTTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHH-HH-HhhCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                   234444443321 11 112245666665 799999999998875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.89  E-value=1.7e-05  Score=72.55  Aligned_cols=121  Identities=12%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228         49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~i  128 (225)
                      ...+|+|+|+||||||+..-+-.+     -..|.|+ +.+.+                 ..|+.....+...+.+|+.+|
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~-----~~~~~~i-~~D~~-----------------~~~~~~~~~~~~~l~~g~~vI  313 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV-----SAGYVHV-NRDTL-----------------GSWQRCVSSCQAALRQGKRVV  313 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG-----GGTCEEC-CGGGS-----------------CSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-----hcCcEEE-ccchH-----------------HHHHHHHHHHHHHHhcCCcEE
Confidence            357899999999999933322111     1157888 76665                 247778888999999999999


Q ss_pred             EEccH------HHHHHH-HhhccCCeEEEEecCCHHHHHH-HhccC--------CHHHHHHHHHHHHHHHHhhCCCCcEE
Q psy10228        129 LDVSG------NAIKRL-QVASLYPVAIFIKPKSVESIME-MNKRM--------TEEQAKKMYDRSMKMEQEFGEFFTAV  192 (225)
Q Consensus       129 ldv~~------~gvk~L-~~~~~~Pi~IFI~pps~~~L~~-L~~R~--------seeei~~rl~~a~k~E~~~~~~fd~v  192 (225)
                      +|...      ..+..+ +..+....+||+.+ +.+++.+ +..|.        .++++..++.... .+....+.||+|
T Consensus       314 iD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~-e~P~~~E~fd~v  391 (416)
T 3zvl_A          314 IDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF-EPPTLAEGFLEI  391 (416)
T ss_dssp             EESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC-CCCCGGGTCSEE
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc-CCCCcccCCcEE
Confidence            99542      222222 21222235677755 5666664 65542        1233333333321 123345789987


Q ss_pred             EE
Q psy10228        193 VQ  194 (225)
Q Consensus       193 I~  194 (225)
                      +.
T Consensus       392 ~~  393 (416)
T 3zvl_A          392 LE  393 (416)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.88  E-value=1.8e-06  Score=70.89  Aligned_cols=140  Identities=9%  Similarity=0.034  Sum_probs=65.0

Q ss_pred             CccEEEEccCCCCCCC---------------------ccc-CC----CCCCCCCCcceEE--ecCHHHHHHh----hhCC
Q psy10228         50 QEPFMLCYTQDDPTTE---------------------DTT-RA----RREYEVDGRDYHF--VSSREQMEKD----IQNH   97 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s---------------------~TT-Rp----~R~~E~dG~dY~F--V~s~eef~~~----i~~~   97 (225)
                      ...|.|+||+|||||+                     ... ++    .+.+..+|..|++  + +.+.+.+.    +..+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~v~~~l~~~  100 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW-DVEWLTHQLFRQLKAS  100 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSS-CHHHHHHHTGGGTTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCcccc-CHHHHHHHHHHHHhcC
Confidence            4589999999999990                     000 11    1122223333333  3 45555443    3456


Q ss_pred             cEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHH
Q psy10228         98 LFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDR  177 (225)
Q Consensus        98 ~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~  177 (225)
                      ..+.+..|.-. +++.... ...+..+.++|+|.....-..+  ..+...+|||.+|.-..++++.+|.  +++.+++..
T Consensus       101 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~--~~~~d~~i~v~~~~~~~~~R~~~R~--~~~~~~~~~  174 (201)
T 1rz3_A          101 HQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEW--RPFFDFVVYLDCPREIRFARENDQV--KQNIQKFIN  174 (201)
T ss_dssp             SEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTT--GGGCSEEEEECCC----------------CHHHHHH
T ss_pred             CccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHH--HhhcCEEEEEeCCHHHHHHHHhcCC--HHHHHHHHh
Confidence            67777766543 3332110 0112357788888654211111  2345689999998755555666676  556666633


Q ss_pred             HH-HHHHhh------CCCCcEEEECC
Q psy10228        178 SM-KMEQEF------GEFFTAVVQGD  196 (225)
Q Consensus       178 a~-k~E~~~------~~~fd~vI~Nd  196 (225)
                      .. ..+..|      ...+|+||.|+
T Consensus       175 ~~~~~~~~y~~~~~~~~~AD~vI~N~  200 (201)
T 1rz3_A          175 RYWKAEDYYLETEEPIKRADVVFDMT  200 (201)
T ss_dssp             HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred             heeHHHHHHhCCCCcHhhCcEEecCC
Confidence            21 111111      35789999886

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.87  E-value=0.00013  Score=58.95  Aligned_cols=99  Identities=16%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             ecHHHHHHHHHcC-CeEEEEccHH---HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHH
Q psy10228        112 TSVASVRDVAEKG-KHCILDVSGN---AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRS  178 (225)
Q Consensus       112 Ts~~sV~~v~~~g-k~~ildv~~~---gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a  178 (225)
                      .-.+.++..++.| ..+++|-.+.   ....+...-..| .+|||.+|.-..++++.+|.        +.+.+++|+...
T Consensus        83 ~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~  162 (203)
T 1ukz_A           83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTF  162 (203)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHH
Confidence            3345566667777 4677774332   222233211123 78999987644444565442        356777776654


Q ss_pred             HHH----HHhhCCCCcE--EEECC-CHHHHHHHHHHHHHh
Q psy10228        179 MKM----EQEFGEFFTA--VVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       179 ~k~----E~~~~~~fd~--vI~Nd-dleea~~~lk~iI~~  211 (225)
                      .+.    ...+ ...+.  +|.|+ ++++++++|..+|..
T Consensus       163 ~~~~~~~~~~~-~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          163 KETSMPVIEYF-ETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHTTHHHHHHH-HTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHH-HhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            321    1112 22343  34554 799999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.87  E-value=1.8e-05  Score=65.89  Aligned_cols=53  Identities=15%  Similarity=0.033  Sum_probs=31.7

Q ss_pred             HHHHHHHHHc--CCeEEEEccHHH---HHHHHh----hccCC-eEEEEecCCHHHHHHHhccC
Q psy10228        114 VASVRDVAEK--GKHCILDVSGNA---IKRLQV----ASLYP-VAIFIKPKSVESIMEMNKRM  166 (225)
Q Consensus       114 ~~sV~~v~~~--gk~~ildv~~~g---vk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~  166 (225)
                      ...|...+.+  |+.+|+|.-+.+   +..|..    .+..| .+||+..|.-..++++..|.
T Consensus        65 ~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           65 IPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             HHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             HHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            3446677777  999999954433   333422    23456 67888876544444576653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.83  E-value=0.00082  Score=53.22  Aligned_cols=94  Identities=12%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             HHHHHHHcCCeEEEEccH---------------HHHHHHH---hhccCC-eEEEEecCCHHHHHHHhccC--CHHHHHHH
Q psy10228        116 SVRDVAEKGKHCILDVSG---------------NAIKRLQ---VASLYP-VAIFIKPKSVESIMEMNKRM--TEEQAKKM  174 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~---------------~gvk~L~---~~~~~P-i~IFI~pps~~~L~~L~~R~--seeei~~r  174 (225)
                      .+...+.+|..+++|-..               .-+..+.   ..+..| .+|||.+|.-..++++.+|.  +.+++.++
T Consensus        75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~  154 (195)
T 2pbr_A           75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEK  154 (195)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHH
Confidence            345567789988888311               1122221   112244 78999887544444565554  34456666


Q ss_pred             HHHHHH-HHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        175 YDRSMK-MEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       175 l~~a~k-~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      +....+ ....+  ..+++|.|+ ++++++++|.+++..
T Consensus       155 ~~~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          155 VRKGFLELAKEE--ENVVVIDASGEEEEVFKEILRALSG  191 (195)
T ss_dssp             HHHHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            544321 11111  123777776 799999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.79  E-value=9.7e-06  Score=70.32  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             CeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHH
Q psy10228        125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDI  201 (225)
Q Consensus       125 k~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea  201 (225)
                      ..||+|...-.  .-........+|||.+|.-..++++..|  .+.+++.+++...... ..+...+|++|.|+ +++++
T Consensus       182 ~~vIveg~~l~--~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~-~~~~~~AD~vIdn~~s~eel  258 (281)
T 2f6r_A          182 TLCVIDAAMLL--EAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQMSG-QQLVEQSNVVLSTLWESHVT  258 (281)
T ss_dssp             CEEEEECTTTT--TTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHTSCCH-HHHHHTCSEEEECSSCHHHH
T ss_pred             CEEEEEechhh--ccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHHHHHHcCCh-HhhHhhCCEEEECCCCHHHH
Confidence            57787754211  0001123458899999754444456555  3677777777654211 12223579999988 79999


Q ss_pred             HHHHHHHHHhc
Q psy10228        202 YQKVKEVIQEQ  212 (225)
Q Consensus       202 ~~~lk~iI~~~  212 (225)
                      +++|..++...
T Consensus       259 ~~~I~~~l~~l  269 (281)
T 2f6r_A          259 QSQVEKAWNLL  269 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.79  E-value=0.00025  Score=55.99  Aligned_cols=94  Identities=7%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             HHHHHHHHHc-CCeEEEEccH-------HHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHH
Q psy10228        114 VASVRDVAEK-GKHCILDVSG-------NAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMK  180 (225)
Q Consensus       114 ~~sV~~v~~~-gk~~ildv~~-------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k  180 (225)
                      .+.+...++. |..+|+|...       .....++..+.....|||.+| .+.+. ++..|.    +.+.++..++..  
T Consensus        66 ~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~~~~~~~--  142 (183)
T 2vli_A           66 LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVEDRLNEL--  142 (183)
T ss_dssp             HHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHHHHHHhh--
Confidence            3455666766 8888888532       222334333333455899886 45544 476664    233343322221  


Q ss_pred             HHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228        181 MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       181 ~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~~~  214 (225)
                       + .+ .+-+ +|.++  ++++++++|..+|.....
T Consensus       143 -~-~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          143 -R-GE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             -T-SG-GGCS-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred             -c-cc-ccce-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence             1 11 2224 77765  699999999999976543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.76  E-value=2.9e-05  Score=63.25  Aligned_cols=91  Identities=15%  Similarity=0.094  Sum_probs=51.7

Q ss_pred             HHHHHcCCeEEEEccH---HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC----HHHHHHHHHHHHHHHHhhCCCC
Q psy10228        118 RDVAEKGKHCILDVSG---NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT----EEQAKKMYDRSMKMEQEFGEFF  189 (225)
Q Consensus       118 ~~v~~~gk~~ildv~~---~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s----eeei~~rl~~a~k~E~~~~~~f  189 (225)
                      ...+..|..+|+|...   .....+........+|||.+| .+++.+ +..|..    .+.++..+..   .+.-+....
T Consensus        95 ~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~---~~~~~~~~~  170 (200)
T 4eun_A           95 DARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQSQLAT---LEALEPDES  170 (200)
T ss_dssp             HHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHHHHHHH---CCCCCTTSC
T ss_pred             HHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHHHHHHH---hCCCCCCCC
Confidence            3344678888888632   222222211111267889886 566654 777752    1222222211   111233447


Q ss_pred             cEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        190 TAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       190 d~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      +++|.|+ ++++++++|.++|...
T Consensus       171 ~~~Id~~~~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          171 GIVLDLRQPPEQLIERALTWLDIA  194 (200)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHHhc
Confidence            8888876 7999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.73  E-value=0.00017  Score=56.93  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             HHHHcCCeEEEEcc---HHHHHHHHhhccCC-eEEEEecCCHHHHH-HHhccCC----HHHHHHHHHHHHHHHHh-hCCC
Q psy10228        119 DVAEKGKHCILDVS---GNAIKRLQVASLYP-VAIFIKPKSVESIM-EMNKRMT----EEQAKKMYDRSMKMEQE-FGEF  188 (225)
Q Consensus       119 ~v~~~gk~~ildv~---~~gvk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~s----eeei~~rl~~a~k~E~~-~~~~  188 (225)
                      ..+..|..+|+|..   ......++... .+ .+|||.+|- +.+. ++..|..    .+-+...+.   ..+.- +...
T Consensus        75 ~~~~~~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~---~~~~~~~~~~  149 (175)
T 1knq_A           75 AMQRTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDF-DVIESRLKARKGHFFKTQMLVTQFE---TLQEPGADET  149 (175)
T ss_dssp             HHHHHCSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCH-HHHHHHHHTSTTCCCCHHHHHHHHH---HCCCCCTTCT
T ss_pred             HHHhcCCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCH-HHHHHHHHhccCCCCchHHHHHHHH---hhhCcccCCC
Confidence            34456888999864   23333343221 23 789999864 5554 4776652    222221111   11111 2334


Q ss_pred             CcEEEECC-CHHHHHHHHHHHHH
Q psy10228        189 FTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       189 fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      .|++|.|+ +++++..+|...+.
T Consensus       150 ~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          150 DVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             TEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCHHHHHHHHHHHHh
Confidence            68888877 79999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.71  E-value=7.9e-05  Score=62.81  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             cCCeEEEEccHH---HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHH----HHhhC
Q psy10228        123 KGKHCILDVSGN---AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKM----EQEFG  186 (225)
Q Consensus       123 ~gk~~ildv~~~---gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~----E~~~~  186 (225)
                      .++..|||--|.   -+..|......| .+|++.+|.-..++++..|.        +++.+++|++...+.    ..-|.
T Consensus       107 ~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~  186 (217)
T 3umf_A          107 KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYK  186 (217)
T ss_dssp             TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788886442   233444333334 78899987644444576664        246688888876431    11122


Q ss_pred             CCCcE-EEEC-CCHHHHHHHHHHHHHhc
Q psy10228        187 EFFTA-VVQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~-vI~N-ddleea~~~lk~iI~~~  212 (225)
                      ..--. .|.. .++++.+++|..+|++.
T Consensus       187 ~~~~l~~Idg~~~~eeV~~~I~~~l~k~  214 (217)
T 3umf_A          187 QQNKVITIDASGTVDAIFDKVNHELQKF  214 (217)
T ss_dssp             TTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            22223 3443 37999999999999753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.69  E-value=1e-05  Score=65.16  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-C
Q psy10228        124 GKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-M  197 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-d  197 (225)
                      +..+|+|...     +...   .....+|||.+|.-..++++..|  .+.+++.+++...... ..+...+|++|.|+ +
T Consensus       106 ~~~vi~d~~~-----l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~~~~~-~~~~~~ad~vId~~~~  179 (203)
T 1uf9_A          106 APLVFLEIPL-----LFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPE-EEKRKRATWVLENTGS  179 (203)
T ss_dssp             CSEEEEECTT-----TTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTSCCH-HHHHHHCSEEECCSSH
T ss_pred             CCEEEEEecc-----eeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHCCCh-hHHHHhCCEEEECCCC
Confidence            5677777431     1111   22348899998754444457677  4556666666542111 11223468888877 6


Q ss_pred             HHHHHHHHHHHHHhccC
Q psy10228        198 PEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       198 leea~~~lk~iI~~~~~  214 (225)
                      +++++++|..++.....
T Consensus       180 ~~~~~~~i~~~~~~~~~  196 (203)
T 1uf9_A          180 LEDLERALKAVLAELTG  196 (203)
T ss_dssp             HHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999986543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.66  E-value=0.00049  Score=55.65  Aligned_cols=88  Identities=10%  Similarity=0.057  Sum_probs=51.8

Q ss_pred             cCCeEEEEccHHHH---HH----HHhhccCC-eEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHHHH---HhhCC
Q psy10228        123 KGKHCILDVSGNAI---KR----LQVASLYP-VAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMKME---QEFGE  187 (225)
Q Consensus       123 ~gk~~ildv~~~gv---k~----L~~~~~~P-i~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k~E---~~~~~  187 (225)
                      .|..+|+|..+.++   ..    +...+..| .+||+.+|....++++..|.    +++.+++|+......-   ..+..
T Consensus        97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~~  176 (201)
T 2cdn_A           97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYR  176 (201)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHhc
Confidence            36678888533222   11    22223445 78899886544444566553    4667777776653210   01224


Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        188 FFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       188 ~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      ..+++|.|+ ++++++++|.++|.
T Consensus       177 ~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          177 DQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             CcEEEEeCCCCHHHHHHHHHHHHc
Confidence            466777775 79999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.65  E-value=3.7e-05  Score=62.32  Aligned_cols=71  Identities=21%  Similarity=0.257  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccCCc
Q psy10228        145 YPVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSGPS  216 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~~~  216 (225)
                      ...+|||.+|.-..++++..|+ +.+++.+++..... ...+....|++|.|+ ++++++++|.+++......|
T Consensus       124 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~-~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~~~  196 (204)
T 2if2_A          124 YDKLIVVYAPYEVCKERAIKRGMSEEDFERRWKKQMP-IEEKVKYADYVIDNSGSIEETYKQVKKVYEELTRDP  196 (204)
T ss_dssp             SSEEEEECCCHHHHHHHHHHTCCCHHHHHHHHTTSCC-HHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTCC--
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHhCCC-hhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHhcCh
Confidence            4488999987434444566664 56677766655321 123344568888887 79999999999998777665

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.63  E-value=9e-05  Score=59.61  Aligned_cols=149  Identities=10%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCC-CCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee------ecHHHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEV-DGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG------TSVASVRDVAE  122 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~-dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG------Ts~~sV~~v~~  122 (225)
                      ...|+|+|++|||||+..-.-.   +. -  .|.|+ +-+++-...  ..+-++++..+...-      ...+.+..++.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La---~~l~--g~~~i-d~d~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~   81 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIA---AELD--GFQHL-EVGKLVKEN--HFYTEYDTELDTHIIEEKDEDRLLDFMEPIMV   81 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHH---HHST--TEEEE-EHHHHHHHT--TCSCC------CCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHH---HhcC--CCEEe-eHHHHHHHh--hhhhhHHHHhhhcccCCCCHHHHHHHHHHHHh
Confidence            3579999999999993221111   00 1  36788 666554432  112122222121110      11344556662


Q ss_pred             cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC-CHHHHHHHHHHH-----H-HHHHhhCCCCcEEEE-
Q psy10228        123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDRS-----M-KMEQEFGEFFTAVVQ-  194 (225)
Q Consensus       123 ~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~a-----~-k~E~~~~~~fd~vI~-  194 (225)
                      .+...++|...  ...+.. .....+|||.+|.-..++++..|. +...+..++...     . +....|.  .|++|. 
T Consensus        82 ~~g~~vi~~~~--~~~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~--~~~vi~~  156 (184)
T 1y63_A           82 SRGNHVVDYHS--SELFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE--DDIVLVR  156 (184)
T ss_dssp             SSSEEEEECSC--CTTSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--GGGEEEE
T ss_pred             ccCCEEEeCch--Hhhhhh-ccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc--cCcEEEC
Confidence            33355666542  111221 223478888886433344577776 544444443211     1 1111232  266665 


Q ss_pred             CC-CHHHHHHHHHHHHHh
Q psy10228        195 GD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       195 Nd-dleea~~~lk~iI~~  211 (225)
                      |+ +++++..++..++..
T Consensus       157 n~~~~~~~~~~v~~i~~~  174 (184)
T 1y63_A          157 ENDTLEQMAATVEEIRER  174 (184)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            54 799996666666543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.53  E-value=2.5e-05  Score=66.72  Aligned_cols=154  Identities=11%  Similarity=0.085  Sum_probs=78.8

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeEEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHCIL  129 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~il  129 (225)
                      ..|+|+|++|||||+..-.-...-+..|..+.++ +.+.+...+..     |.... ..+++.....++..++. ..+|+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~-~~D~~~~~l~~-----~~~~~e~~~~~~~~~~i~~~l~~-~~vIi   77 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL-GSDLIRESFPV-----WKEKYEEFIKKSTYRLIDSALKN-YWVIV   77 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-CTHHHHTTSSS-----CCGGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE-CchHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhC-CEEEE
Confidence            4799999999999922111100000124444556 56666544332     11110 01223334556777766 78888


Q ss_pred             EccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHH-HhccC---CHHHHHHHHHHHHHHHHhh-CCCCcEEEECC-
Q psy10228        130 DVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKRM---TEEQAKKMYDRSMKMEQEF-GEFFTAVVQGD-  196 (225)
Q Consensus       130 dv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R~---seeei~~rl~~a~k~E~~~-~~~fd~vI~Nd-  196 (225)
                      |...   .....+..   ....| ++||+.+| .+.+.+ +.+|.   +++.++++..+..+....+ +...+.+|.++ 
T Consensus        78 D~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~  156 (260)
T 3a4m_A           78 DDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTK  156 (260)
T ss_dssp             CSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTS
T ss_pred             eCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEEEeCCC
Confidence            8421   22222321   12234 67889875 455554 76665   3444443322210000001 02356788765 


Q ss_pred             --CHHHHHHHHHHHHHhc
Q psy10228        197 --MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 --dleea~~~lk~iI~~~  212 (225)
                        +++++++.|.+.+...
T Consensus       157 ~~~~~ei~~~I~~~l~~~  174 (260)
T 3a4m_A          157 DIDFNEIAKKLIEKSKEI  174 (260)
T ss_dssp             CCCHHHHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHhcccCC
Confidence              5899999998887653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.52  E-value=0.00011  Score=59.60  Aligned_cols=86  Identities=14%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHH-
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPE-  199 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dle-  199 (225)
                      +..+|++...-. . .........+|||.+|.-..++++..|.  +.+++.+|+......+..+ ...|++|.|+ +++ 
T Consensus       105 ~~~vv~~~~~l~-e-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~-~~ad~vIdn~~~~~~  181 (206)
T 1jjv_A          105 APYTLFVVPLLI-E-NKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERL-KWADDVINNDAELAQ  181 (206)
T ss_dssp             SSEEEEECTTTT-T-TTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHHHHHSCCHHHHH-HHCSEEEECCSCHHH
T ss_pred             CCEEEEEechhh-h-cCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHH-HhCCEEEECCCCccc
Confidence            567777742100 0 0001234578999987544455576663  6778888877421111112 2568999887 699 


Q ss_pred             ---HHHHHHHHHHHhc
Q psy10228        200 ---DIYQKVKEVIQEQ  212 (225)
Q Consensus       200 ---ea~~~lk~iI~~~  212 (225)
                         ++.++|..++...
T Consensus       182 ~~~~~~~~i~~~~~~~  197 (206)
T 1jjv_A          182 NLPHLQQKVLELHQFY  197 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence               8999998888653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.50  E-value=7.1e-05  Score=59.53  Aligned_cols=64  Identities=13%  Similarity=0.252  Sum_probs=38.1

Q ss_pred             eEEEEecCCHHHHHHHhcc--------CCHHHHHHHHHHHHHH----HHhhCC-CCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        147 VAIFIKPKSVESIMEMNKR--------MTEEQAKKMYDRSMKM----EQEFGE-FFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R--------~seeei~~rl~~a~k~----E~~~~~-~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      .+||+.+|.-..++++..|        .+++.+++|+....+.    ...|.. ..+++|.|+ ++++++++|.+++.
T Consensus       108 ~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          108 GVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             EEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            6788988643333445544        2467777777654321    112221 125666665 79999999988763

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.46  E-value=0.00041  Score=58.02  Aligned_cols=95  Identities=9%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             HHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCC----H---HH
Q psy10228        117 VRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMT----E---EQ  170 (225)
Q Consensus       117 V~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~s----e---ee  170 (225)
                      |+..+++|+++|.|=-               .+-+..+..   ....| .+||+..|--..++++.+|+.    +   .+
T Consensus        86 i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~  165 (213)
T 4tmk_A           86 IKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFD  165 (213)
T ss_dssp             HHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHH
T ss_pred             HHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence            5667789999999831               122233332   12456 789998864334445666542    1   23


Q ss_pred             HHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        171 AKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       171 i~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      ..+++..+.. +..-...-..+|..+ ++++..++|.++|...
T Consensus       166 f~~rv~~~y~-~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4tmk_A          166 FFNRTRARYL-ELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW  207 (213)
T ss_dssp             HHHHHHHHHH-HHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence            4445544431 121111223445543 7999999999888753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.46  E-value=0.00098  Score=53.20  Aligned_cols=67  Identities=12%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             eEEEEecCCHHHHHHHhccCCHH------HHHHHHHHHHH-HHHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228        147 VAIFIKPKSVESIMEMNKRMTEE------QAKKMYDRSMK-MEQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R~see------ei~~rl~~a~k-~E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~~  213 (225)
                      .+|||.+|--..++++..|..+.      +..+++..... ....+. ...+++|.|+ ++++++++|..++....
T Consensus       127 ~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~  202 (205)
T 2jaq_A          127 IVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK  202 (205)
T ss_dssp             EEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred             EEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            78999987544444576665321      33345544322 122343 4568888876 79999999999997654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.42  E-value=0.00026  Score=55.40  Aligned_cols=64  Identities=9%  Similarity=0.187  Sum_probs=38.8

Q ss_pred             CeEEEEecCCHHHHHHHh--cc-C-----CHHHHHHHHHHHHHH-HHhhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIMEMN--KR-M-----TEEQAKKMYDRSMKM-EQEFGEFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~--~R-~-----seeei~~rl~~a~k~-E~~~~~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ..+|||.+|.-..++++.  .| .     ..++..+++...... +..+.. .|++|.|+  ++++++++|..++.
T Consensus        95 ~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A           95 GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD-VAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH-HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh-CcEEEECCCCCHHHHHHHHHHHhc
Confidence            378999987544444566  55 1     234444455443221 112333 67888876  69999999988775

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.39  E-value=0.0022  Score=52.19  Aligned_cols=88  Identities=9%  Similarity=0.067  Sum_probs=49.8

Q ss_pred             HHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHH----hccC---CHHHHHHHHHHHHHHHH-----hhCCC
Q psy10228        121 AEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEM----NKRM---TEEQAKKMYDRSMKMEQ-----EFGEF  188 (225)
Q Consensus       121 ~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L----~~R~---seeei~~rl~~a~k~E~-----~~~~~  188 (225)
                      +..|..||++.-.-+.   .......++|||.+|.-..++++    ..|+   +.+++.+++..-...+.     .+...
T Consensus       115 ~~~~~~~vi~g~~~~~---~~~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~  191 (219)
T 2h92_A          115 LAAEKGIVMDGRDIGT---VVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA  191 (219)
T ss_dssp             HHTTCCEEEEESSCCC---CCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC
T ss_pred             hccCCcEEEEcCCccc---eecCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC
Confidence            4456678877421010   00112347899998643334443    2444   56778777753211111     11223


Q ss_pred             Cc-EEEECC--CHHHHHHHHHHHHHh
Q psy10228        189 FT-AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       189 fd-~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      .| ++|.|+  ++++++++|..++..
T Consensus       192 ~d~~~Id~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          192 DDAVTLDTTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             TTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            45 788876  799999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.38  E-value=0.0023  Score=50.54  Aligned_cols=104  Identities=10%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-ceee--cHHHHHHHHHcCCe
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYGT--SVASVRDVAEKGKH  126 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YGT--s~~sV~~v~~~gk~  126 (225)
                      ...|+|+|++|||||+...+-.   +.  -.+.|+ +-+++....  ..|-++++.... .+..  -.+.+..++..|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~---~~--~~~~~~-~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA---SK--SGLKYI-NVGDLAREE--QLYDGYDEEYDCPILDEDRVVDELDNQMREGGV   82 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH---HH--HCCEEE-EHHHHHHHH--TCEEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH---HH--hCCeEE-EHHHHHhhc--chhhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence            3579999999999993222111   00  134566 455544332  445555543221 1222  34556677777865


Q ss_pred             EEEEccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC
Q psy10228        127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM  166 (225)
Q Consensus       127 ~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~  166 (225)
                      + ++....  ..+. ......+||+.++. +++. ++..|.
T Consensus        83 v-v~~~~~--~~~~-~~~~~~vi~L~~~~-e~l~~R~~~r~  118 (180)
T 3iij_A           83 I-VDYHGC--DFFP-ERWFHIVFVLRTDT-NVLYERLETRG  118 (180)
T ss_dssp             E-EECSCC--TTSC-GGGCSEEEEEECCH-HHHHHHHHHTT
T ss_pred             E-EEechh--hhcc-hhcCCEEEEEECCH-HHHHHHHHHcC
Confidence            4 443321  1111 12234789998864 5555 477776

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=0.00015  Score=57.46  Aligned_cols=89  Identities=9%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----
Q psy10228        123 KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ----  183 (225)
Q Consensus       123 ~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~----  183 (225)
                      .+..+|+|-.+   .....+..   ....| .+||+.+|.-..++++..|.        +.+.+++++........    
T Consensus        85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  164 (196)
T 1tev_A           85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIID  164 (196)
T ss_dssp             TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence            47888888332   22221211   11123 68999886544444554432        35666667665433221    


Q ss_pred             hhCCCCcE-EEECC-CHHHHHHHHHHHHHh
Q psy10228        184 EFGEFFTA-VVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       184 ~~~~~fd~-vI~Nd-dleea~~~lk~iI~~  211 (225)
                      .|...-++ +|.|+ ++++++++|..+|..
T Consensus       165 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          165 LYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            23333354 66665 799999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.31  E-value=1.1e-06  Score=77.10  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=33.8

Q ss_pred             hhCCcEEEEEEeC-----CcceeecHHHHH---HHHHcCCeEEEEccHHHHH--HHHhhccCCeEEEEecCCHHHHHH
Q psy10228         94 IQNHLFIEAGQYN-----DNLYGTSVASVR---DVAEKGKHCILDVSGNAIK--RLQVASLYPVAIFIKPKSVESIME  161 (225)
Q Consensus        94 i~~~~FiE~~~~~-----gn~YGTs~~sV~---~v~~~gk~~ildv~~~gvk--~L~~~~~~Pi~IFI~pps~~~L~~  161 (225)
                      +..+..+++..|.     +..|+.....+.   .+.+....+|++.-.-++.  ...........|||.||....+++
T Consensus        87 l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R  164 (290)
T 1a7j_A           87 YGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ  164 (290)
T ss_dssp             HHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred             HHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence            3445566766661     345665543321   1112345666662221100  001123455899999998777776

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.31  E-value=0.00069  Score=52.78  Aligned_cols=62  Identities=10%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             CeEEEEecCCHHHHHHHhccC-----C--HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM-----T--EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~-----s--eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ..+|||.+|.-..++++..|.     +  .+.+++++...   ...+.. .|++| |+  ++++++++|..++...
T Consensus        94 ~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~---~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~~  164 (168)
T 2pt5_A           94 GTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEER---RKIYSK-ADIKV-KGEKPPEEVVKEILLSLEGN  164 (168)
T ss_dssp             SEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHH---HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHH---HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHHhc
Confidence            488999987544444555432     1  23344444432   123445 89988 76  6999999999988753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.26  E-value=0.00025  Score=56.36  Aligned_cols=66  Identities=11%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             CeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHH-HHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMK-MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k-~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ..+|||.+|--..++++..|.     +.++..+++..... .+..|....|.+|.|+  ++++++++|..++..
T Consensus        95 ~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~~  168 (184)
T 2iyv_A           95 HTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQV  168 (184)
T ss_dssp             SCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSCC
T ss_pred             CeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHhh
Confidence            478999986433334465553     11112222332211 1122334568889887  699999999887753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.22  E-value=0.0022  Score=52.78  Aligned_cols=96  Identities=11%  Similarity=0.125  Sum_probs=54.1

Q ss_pred             HHHHHHHH-cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhc--cCCHHHHHHHHHHHHHHHHhh-----
Q psy10228        115 ASVRDVAE-KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNK--RMTEEQAKKMYDRSMKMEQEF-----  185 (225)
Q Consensus       115 ~sV~~v~~-~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~--R~seeei~~rl~~a~k~E~~~-----  185 (225)
                      +.+++++. +...||++--+.++ -|.. .-..+.|||.+| .+.+. ++.+  ..+.+++.+.+..-.+....+     
T Consensus        88 ~~i~~la~~~~~~~Vi~Gr~g~~-vl~~-~~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~  164 (201)
T 3fdi_A           88 NFIRKKANEEKESFVIVGRCAEE-ILSD-NPNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYC  164 (201)
T ss_dssp             HHHHHHHHTSCCCEEEESTTHHH-HTTT-CTTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCEEEEECCcch-hcCC-CCCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445541 44468877544333 2432 113488999986 45444 4433  235666655554332211211     


Q ss_pred             ------CCCCcEEEECC--CHHHHHHHHHHHHHhcc
Q psy10228        186 ------GEFFTAVVQGD--MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       186 ------~~~fd~vI~Nd--dleea~~~lk~iI~~~~  213 (225)
                            ...+|.+|.++  +++++++.|...+...+
T Consensus       165 ~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~~  200 (201)
T 3fdi_A          165 ESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSRD  200 (201)
T ss_dssp             SSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC-
T ss_pred             CCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHhc
Confidence                  12478888876  69999999999987654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.22  E-value=2.4e-07  Score=75.61  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=49.5

Q ss_pred             cceeecHHHHHHHHHcCCeEEEEccH------HHH-----------HHHHhh-----cc-CC-eEEEEecCCHHHHHHHh
Q psy10228        108 NLYGTSVASVRDVAEKGKHCILDVSG------NAI-----------KRLQVA-----SL-YP-VAIFIKPKSVESIMEMN  163 (225)
Q Consensus       108 n~YGTs~~sV~~v~~~gk~~ildv~~------~gv-----------k~L~~~-----~~-~P-i~IFI~pps~~~L~~L~  163 (225)
                      +.|++ .+.|...++.|..+|+|-..      ++.           ..+...     .+ .| .+||+..|.-..+.++.
T Consensus        73 ~r~~~-~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~  151 (214)
T 1gtv_A           73 DRAGA-VHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSR  151 (214)
T ss_dssp             HHHEE-HHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHH
T ss_pred             HHhhh-HHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHH
Confidence            34555 55666666778889988653      221           112211     21 34 57888776433334465


Q ss_pred             ccCC------------HHHHHHHHHHHHHHHHhhCC-CCc-EEEECC-CHHHHHHHHH
Q psy10228        164 KRMT------------EEQAKKMYDRSMKMEQEFGE-FFT-AVVQGD-MPEDIYQKVK  206 (225)
Q Consensus       164 ~R~s------------eeei~~rl~~a~k~E~~~~~-~fd-~vI~Nd-dleea~~~lk  206 (225)
                      +|..            ..++.+++..... +..... ..+ .+|.|+ ++++..++|.
T Consensus       152 ~R~~~~~~~~~d~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~vId~~~~~~~v~~~i~  208 (214)
T 1gtv_A          152 GRAQRDPGRARDNYERDAELQQRTGAVYA-ELAAQGWGGRWLVVGADVDPGRLAATLA  208 (214)
T ss_dssp             HHHHEBBEEEEEEEEEEHHHHHHHHHHHH-HHHHEEEEEEEEEEEEEEBHHHHHHHHC
T ss_pred             cccccccccccccccccHHHHHHHHHHHH-HHHHhCCCCCEEEEeCCCCHHHHHHHhc
Confidence            5421            1456666655431 221111 134 455554 6888777764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.21  E-value=0.00033  Score=54.95  Aligned_cols=60  Identities=13%  Similarity=0.259  Sum_probs=36.0

Q ss_pred             eEEEEecCCHHHHHHHhcc-----C--C-HHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHH
Q psy10228        147 VAIFIKPKSVESIMEMNKR-----M--T-EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R-----~--s-eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI  209 (225)
                      .+|||.+|--..++++..|     .  + .+++++++...   +..+....|++|.|+ ++++++++|.++|
T Consensus        99 ~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r---~~~~~~~a~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A           99 TTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR---QALYEKNASFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             EEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHH---HHHHHHTCSEEEEGGGCHHHHHHHHHHC-
T ss_pred             EEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH---HHHHHHHCCEEEECCCCHHHHHHHHHHHh
Confidence            7899998754445557655     1  2 23444444322   122334578999877 6999998887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.16  E-value=0.00032  Score=55.81  Aligned_cols=108  Identities=8%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE----EEE-EeCCcceeecHHHHHHHHHcC
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI----EAG-QYNDNLYGTSVASVRDVAEKG  124 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi----E~~-~~~gn~YGTs~~sV~~v~~~g  124 (225)
                      ...|+|+|++|||||+...+-..   .-|  +.|+ +.+.+...+..+ +-    +|. ......|+...+.+..+++.|
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~---~l~--~~~i-~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   77 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT---GLR--LPLL-SKDAFKEVMFDG-LGWSDREWSRRVGATAIMMLYHTAATILQSG   77 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH---HHT--CCEE-EHHHHHHHHHHH-HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH---HcC--CeEe-cHHHHHHHHHHh-cCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence            35799999999999932211110   001  3455 556554433221 10    000 000112344444566778889


Q ss_pred             CeEEEEccHH------HHHHHHhhccCC-eEEEEecCCHHHHHH-Hhcc
Q psy10228        125 KHCILDVSGN------AIKRLQVASLYP-VAIFIKPKSVESIME-MNKR  165 (225)
Q Consensus       125 k~~ildv~~~------gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R  165 (225)
                      ..+|+|....      .+..|......| .+||+.+| .+++.+ +..|
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R  125 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSR  125 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHh
Confidence            9999996542      122233333345 67888875 555554 6544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.14  E-value=0.0053  Score=50.98  Aligned_cols=88  Identities=11%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             HHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHH----hccC---CHHHHHHHHHHHHHHHHh-----hCCC
Q psy10228        121 AEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEM----NKRM---TEEQAKKMYDRSMKMEQE-----FGEF  188 (225)
Q Consensus       121 ~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L----~~R~---seeei~~rl~~a~k~E~~-----~~~~  188 (225)
                      +..|..||++.-.-+...+.   ....+|||.++.-..++++    ..|+   +.+++.+++..-...+..     +...
T Consensus       132 ~~~~~~~v~~g~~~~~~~l~---~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~  208 (236)
T 1q3t_A          132 IAQQGGIVMDGRDIGTVVLP---QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQA  208 (236)
T ss_dssp             HHTTSCEEEECSSCSSSSGG---GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCC
T ss_pred             hcccCCEEEECCcchhhhcc---CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccccc
Confidence            34566788773321110111   2347899998754444444    4454   567777666542111111     1122


Q ss_pred             Cc-EEEECC--CHHHHHHHHHHHHHh
Q psy10228        189 FT-AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       189 fd-~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      .| ++|.|+  ++++++++|..++..
T Consensus       209 ~d~~vId~~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          209 EDAVYLDTTGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             TTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            34 778776  699999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.12  E-value=0.00078  Score=55.12  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHH----HhhCC------CCcEEEECC-CHHHHHHHHHHHH
Q psy10228        168 EEQAKKMYDRSMKME----QEFGE------FFTAVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       168 eeei~~rl~~a~k~E----~~~~~------~fd~vI~Nd-dleea~~~lk~iI  209 (225)
                      ++.+++|+....+.-    ..|..      ....+|..+ ++++.+++|..+|
T Consensus       161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            567888887653210    11221      122334433 7999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.06  E-value=0.001  Score=54.90  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCc----EEEEC-CCHHHHHHHHHHHHHhc
Q psy10228        168 EEQAKKMYDRSMKMEQEFGEFFT----AVVQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       168 eeei~~rl~~a~k~E~~~~~~fd----~vI~N-ddleea~~~lk~iI~~~  212 (225)
                      .+.+++|+....+.-.....+|+    ++++| +++++++++|..+|...
T Consensus       166 ~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~~~~~v~~~i~~~l~~~  215 (227)
T 1zd8_A          166 PETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTK  215 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCCCHHHHHHHHHHHHHhh
Confidence            46777887665432111112222    34444 48999999999999753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=97.05  E-value=2e-05  Score=74.94  Aligned_cols=158  Identities=9%  Similarity=0.059  Sum_probs=78.7

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc-EEEEEEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL-FIEAGQYNDNLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~-FiE~~~~~gn~YGTs~~sV~~v~~~gk~~i  128 (225)
                      ...|+|+|++|||||+....-.+.-...|.+++|+ +.+.+...+..+. |-+ ..... .+..-...++.+++.|..+|
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~l-d~D~ir~~l~~~~~f~~-~er~~-~l~~i~~~~~~~l~~G~~VI  448 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL-DGDVVRTHLSRGLGFSK-EDRIT-NILRVGFVASEIVKHNGVVI  448 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-CHHHHHHHTCTTCCSSH-HHHHH-HHHHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEE-CchHhhhhhcccccccH-HHHHH-HHHHHHHHHHHHHhCCCEEE
Confidence            35789999999999922111111001257889999 8888776653221 100 00000 01111223455678899999


Q ss_pred             EEccH---HHHHHHHhh-ccCC-eEEEEecCCHHHHH-HHhccCCHHHHHHHHHHHHHHHHhhC--CCCcEEEECC--CH
Q psy10228        129 LDVSG---NAIKRLQVA-SLYP-VAIFIKPKSVESIM-EMNKRMTEEQAKKMYDRSMKMEQEFG--EFFTAVVQGD--MP  198 (225)
Q Consensus       129 ldv~~---~gvk~L~~~-~~~P-i~IFI~pps~~~L~-~L~~R~seeei~~rl~~a~k~E~~~~--~~fd~vI~Nd--dl  198 (225)
                      +|...   .....++.. .-.. ++|||.+|- +.+. ++.+++..++....+..-..+...+.  ...|.+|.|+  ++
T Consensus       449 ~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~-e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s~  527 (546)
T 2gks_A          449 CALVSPYRSARNQVRNMMEEGKFIEVFVDAPV-EVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTP  527 (546)
T ss_dssp             EECCCCCHHHHHHHHTTSCTTCEEEEEEECCG-GGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETTTSCH
T ss_pred             EEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCH-HHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECCCCCH
Confidence            99421   111122210 1113 789999854 5443 34322111100001110000000111  2468888886  79


Q ss_pred             HHHHHHHHHHHHh
Q psy10228        199 EDIYQKVKEVIQE  211 (225)
Q Consensus       199 eea~~~lk~iI~~  211 (225)
                      +++.++|...+..
T Consensus       528 eev~~~I~~~L~~  540 (546)
T 2gks_A          528 EESALKILEFLKK  540 (546)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.05  E-value=0.0084  Score=50.33  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             HHHHHHHcCCeEEEEccHHHHHHHH--hhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHh-hC----
Q psy10228        116 SVRDVAEKGKHCILDVSGNAIKRLQ--VASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQE-FG----  186 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~~gvk~L~--~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~-~~----  186 (225)
                      .|+++++++ .||++--+.|+ -|.  ...-..+.|||.+|--..++++.++  .+.+++.+.+..-.+.... |.    
T Consensus       108 ~i~~la~~~-~~Vi~Grggg~-vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg  185 (223)
T 3hdt_A          108 VMRELAESE-PCIFVGRAAGY-VLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTG  185 (223)
T ss_dssp             HHHHHHHHS-CEEEESTTHHH-HHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCC-CEEEEeCCcch-hcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            456666655 57776334343 231  1111248899999643333344332  3555555555443221121 11    


Q ss_pred             ------CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        187 ------EFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       187 ------~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                            ..+|.+|..+  +++++++.|...+..
T Consensus       186 ~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~  218 (223)
T 3hdt_A          186 SEWHSMKNYDLPINTTKLTLEETAELIKAYIRL  218 (223)
T ss_dssp             SCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence                  3688988876  699999999998875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.04  E-value=0.0085  Score=49.48  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             HHHHHHHcCCeEEEEccH---------------HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCC------HH-
Q psy10228        116 SVRDVAEKGKHCILDVSG---------------NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMT------EE-  169 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~---------------~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~s------ee-  169 (225)
                      .|...+++|+++|.|--.               +-+..+..   ..+.| .+||+..|--..++++.+|..      .+ 
T Consensus        77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~  156 (205)
T 4hlc_A           77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED  156 (205)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred             HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence            356677889999988321               22233332   23457 789998864444555766652      11 


Q ss_pred             -HHHHHHHHHHHHHHhhCCCC-cEEEE-CCCHHHHHHHHHHHHHh
Q psy10228        170 -QAKKMYDRSMKMEQEFGEFF-TAVVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       170 -ei~~rl~~a~k~E~~~~~~f-d~vI~-Nddleea~~~lk~iI~~  211 (225)
                       +..+++..+.. ++.-...- -.+|. |.++|+..+++.++|..
T Consensus       157 ~~f~~~v~~~Y~-~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~  200 (205)
T 4hlc_A          157 LKFHEKVIEGYQ-EIIHNESQRFKSVNADQPLENVVEDTYQTIIK  200 (205)
T ss_dssp             HHHHHHHHHHHH-HHHHSCCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence             23344443321 22111111 23444 33789988888887764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.01  E-value=0.00061  Score=54.43  Aligned_cols=108  Identities=6%  Similarity=0.030  Sum_probs=52.7

Q ss_pred             ccEEEEccCCCCCCC---cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC--CcceeecHHHHHHHHHcCC
Q psy10228         51 EPFMLCYTQDDPTTE---DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN--DNLYGTSVASVRDVAEKGK  125 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s---~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~--gn~YGTs~~sV~~v~~~gk  125 (225)
                      .+++|+||+|||||+   .-.. |    ..|  ..|+ +-+++..+...+.+.++....  ...|..-...+...+..+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~-~----~~g--~~~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   74 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA-Q----LDN--SAYI-EGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN   74 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH-H----SSS--EEEE-EHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCcHHHHHHHHhc-c----cCC--eEEE-cccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence            478999999999991   1111 1    112  2466 677777655444443322000  0111111222333445677


Q ss_pred             eEEEEc--cHHHHHHHHhh----ccC-Ce-EEEEecCCHHHHHH-HhccCC
Q psy10228        126 HCILDV--SGNAIKRLQVA----SLY-PV-AIFIKPKSVESIME-MNKRMT  167 (225)
Q Consensus       126 ~~ildv--~~~gvk~L~~~----~~~-Pi-~IFI~pps~~~L~~-L~~R~s  167 (225)
                      .+|+|.  .....+.++..    +.. .. +|++. ++.+.|.+ +..|..
T Consensus        75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~l~~R~~~r~~  124 (189)
T 2bdt_A           75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW-TNREELLRRDALRKK  124 (189)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHHHHHHTTTSCC
T ss_pred             cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHHHHHHHHhccc
Confidence            888885  33322222211    111 33 34554 56777765 666653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.99  E-value=0.0028  Score=52.58  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             HHHHHHHcCCeEEEEccHHH---HHHH----HhhccCC-eEEEEecCCHHHHHHHhccC---------------------
Q psy10228        116 SVRDVAEKGKHCILDVSGNA---IKRL----QVASLYP-VAIFIKPKSVESIMEMNKRM---------------------  166 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~~g---vk~L----~~~~~~P-i~IFI~pps~~~L~~L~~R~---------------------  166 (225)
                      -|.+.+.+....|||--|.-   +..|    ...+..| .+|++.+|.-..++++..|.                     
T Consensus        67 lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~  146 (206)
T 3sr0_A           67 LIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVK  146 (206)
T ss_dssp             HHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCC
T ss_pred             HHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCce
Confidence            34444555556788854422   2222    2233444 68899988655455565541                     


Q ss_pred             -------CHHHHHHHHHHHHHH----HHhhCCCCcE-EEEC-CCHHHHHHHHHHHHHh
Q psy10228        167 -------TEEQAKKMYDRSMKM----EQEFGEFFTA-VVQG-DMPEDIYQKVKEVIQE  211 (225)
Q Consensus       167 -------seeei~~rl~~a~k~----E~~~~~~fd~-vI~N-ddleea~~~lk~iI~~  211 (225)
                             +++.+++|++...+.    ...|....-+ .|.. .++++.+++|..+|.+
T Consensus       147 l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          147 VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             ecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                   367899999987431    1122222233 3443 3799999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.98  E-value=0.0002  Score=60.54  Aligned_cols=151  Identities=14%  Similarity=0.038  Sum_probs=68.8

Q ss_pred             CCccEEEEccCCCCCC-----------C-------cccCCCCCCCCCCcceEEecCHHHHHHhhhC-CcEEEEE---EeC
Q psy10228         49 DQEPFMLCYTQDDPTT-----------E-------DTTRARREYEVDGRDYHFVSSREQMEKDIQN-HLFIEAG---QYN  106 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~-----------s-------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~-~~FiE~~---~~~  106 (225)
                      ...+|+|.|++|||||           .       .|||.|..... |         +.+.+.+.+ +.+-.+.   -|.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~-g---------~~ir~~l~~~~~~~~~~e~llf~   89 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL-N---------ESVRNLLFKAQGLDSLSELLFFI   89 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH-H---------HHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH-H---------HHHHHHHhCCCCCCHHHHHHHHH
Confidence            3568999999999998           2       34888753221 1         222222221 1100000   011


Q ss_pred             CcceeecHHHHHHHHHcCCeEEEEccH---------------HHHHHHHhh--ccCC-eEEEEecCCHHHHHHH-hccCC
Q psy10228        107 DNLYGTSVASVRDVAEKGKHCILDVSG---------------NAIKRLQVA--SLYP-VAIFIKPKSVESIMEM-NKRMT  167 (225)
Q Consensus       107 gn~YGTs~~sV~~v~~~gk~~ildv~~---------------~gvk~L~~~--~~~P-i~IFI~pps~~~L~~L-~~R~s  167 (225)
                      .+.|..-.+.|+..+++|+++|.|=..               +-+..|...  +..| .+||+..|--..++++ +.|..
T Consensus        90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E  169 (223)
T 3ld9_A           90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYE  169 (223)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccc
Confidence            122222223355677889999988422               112233221  1346 7899987643444445 22222


Q ss_pred             H--HHHHHHHHHHHH-HHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        168 E--EQAKKMYDRSMK-MEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       168 e--eei~~rl~~a~k-~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      .  .+..+++..+.. +...+ +.-..+|.++ ++++. ++|.++|..
T Consensus       170 ~~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~  215 (223)
T 3ld9_A          170 FADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLE  215 (223)
T ss_dssp             --CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence            2  244445554431 11122 2235666654 56666 666666654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.91  E-value=0.00047  Score=55.05  Aligned_cols=150  Identities=13%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee--cH---H---HH-HHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT--SV---A---SV-RDV  120 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT--s~---~---sV-~~v  120 (225)
                      ...|+|+|++|||||+....-...-...|..+.|+ +-+.+...+..+          ..|-.  ..   .   .+ +..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~-~~d~~~~~~~~~----------~~~~~~~r~~~~~~~~~~~~~~   81 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL-DGDWARTTVSEG----------AGFTREERLRHLKRIAWIARLL   81 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHTTTTTT----------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe-eHHHHHHHHhhc----------cCCChhhHHHHHHHHHHHHHHH
Confidence            46899999999999921111100001124455676 556654433211          11110  00   0   01 222


Q ss_pred             HHcCCeEEEEccH--HH----HHHHHhhccCC-eEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhhC--CCCc
Q psy10228        121 AEKGKHCILDVSG--NA----IKRLQVASLYP-VAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEFG--EFFT  190 (225)
Q Consensus       121 ~~~gk~~ildv~~--~g----vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~~--~~fd  190 (225)
                      ++.|.++++|...  ++    ++.+....-.| .+||+.+| .+.+.+ +.++.-.......+.........|.  ...+
T Consensus        82 ~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  160 (186)
T 2yvu_A           82 ARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQ  160 (186)
T ss_dssp             HTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCS
T ss_pred             HhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCc
Confidence            4678888877532  11    22221111134 67899876 454432 2111000000000000000111132  2457


Q ss_pred             EEEECC--CHHHHHHHHHHHHHh
Q psy10228        191 AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       191 ~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      .+|.++  +++++.++|...|..
T Consensus       161 ~~Id~~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          161 LVLDTESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             EEEETTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHH
Confidence            888875  689999999988864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.88  E-value=0.00018  Score=57.14  Aligned_cols=25  Identities=36%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ...|++|.|+  +++++.++|..++..
T Consensus       149 ~~ad~vid~~~~~~~~~~~~i~~~l~~  175 (179)
T 2pez_A          149 EAPELVLKTDSCDVNDCVQQVVELLQE  175 (179)
T ss_dssp             SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            3568888886  699999999998875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.77  E-value=0.011  Score=48.40  Aligned_cols=14  Identities=7%  Similarity=0.033  Sum_probs=12.7

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..|+|+|++|||||
T Consensus         6 ~~I~l~G~~GsGKs   19 (217)
T 3be4_A            6 HNLILIGAPGSGKG   19 (217)
T ss_dssp             CEEEEEECTTSSHH
T ss_pred             eEEEEECCCCCCHH
Confidence            46899999999999

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.68  E-value=3.4e-05  Score=63.41  Aligned_cols=154  Identities=8%  Similarity=0.047  Sum_probs=73.0

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCC-CCCcceEEecCHHHHHHhhhCCcEEEEE-EeCCcceeecHHHHHHHHHcCCeE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYE-VDGRDYHFVSSREQMEKDIQNHLFIEAG-QYNDNLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E-~dG~dY~FV~s~eef~~~i~~~~FiE~~-~~~gn~YGTs~~sV~~v~~~gk~~  127 (225)
                      ..+|+|+|++|||||+....-.+.-. ..|..+.++ +.+.+...+..+. . +. ......|..-...+...++.|..+
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~-~~d~~r~~l~~~~-~-~~~~~r~~~~~~~~~~~~~~l~~g~~V  101 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL-DGDNIRFGLNKDL-G-FSEADRNENIRRIAEVAKLFADSNSIA  101 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE-CHHHHTTTTTTTC-C-SSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE-CChHHhhhhcccc-C-CCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence            45899999999999921111000000 135557788 6666554432210 0 00 000001111112234556789999


Q ss_pred             EEEcc------HHHHHHHHh---hc---cCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH-----HHHHhhC--C
Q psy10228        128 ILDVS------GNAIKRLQV---AS---LYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM-----KMEQEFG--E  187 (225)
Q Consensus       128 ildv~------~~gvk~L~~---~~---~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~-----k~E~~~~--~  187 (225)
                      |+|..      .+.++.+..   .+   -.| .+||+.+| .+++.   +|... .+.++.....     .+...|.  .
T Consensus       102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~---~R~~r-~~~~~~r~~~~~~~~~~~~~y~~~~  176 (211)
T 1m7g_A          102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAE---QRDPK-GLYKKAREGVIKEFTGISAPYEAPA  176 (211)
T ss_dssp             EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHH---TSCTT-CHHHHHHHTSSSSCBTTTBCCCCCS
T ss_pred             EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHH---HhhhH-HHHHHHHhcchhhhhhhhhhccCCC
Confidence            98842      111222221   11   134 67889875 45442   33210 0111110000     0000111  2


Q ss_pred             CCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        188 FFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       188 ~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ..+++|.++  ++++++++|...|..
T Consensus       177 ~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          177 NPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             SCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            347888765  699999999999975

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.66  E-value=0.00083  Score=56.39  Aligned_cols=152  Identities=9%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             CccEEEEccCCCCCC-------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE-----EEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT-------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF-----IEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F-----iE~~~~~gn~YG  111 (225)
                      +.+|++.|++||||+             ..+||-|..+.--|         +.....+.+..+     .|.--|..+.+-
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g---------~~ir~~l~~~~~~~~~~~~~llf~a~R~~   75 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIG---------GLINEYLTDDSFQLSDQAIHLLFSANRWE   75 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHH---------HHHHHHHHCTTSCCCHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHH---------HHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            568999999999998             25666663211111         122222222210     010012222233


Q ss_pred             ecHHHHHHHHHcCCeEEEEccH------HH--------HHHHHh---hccCC-eEEEE-ecCCHHHHHHHhcc---CCHH
Q psy10228        112 TSVASVRDVAEKGKHCILDVSG------NA--------IKRLQV---ASLYP-VAIFI-KPKSVESIMEMNKR---MTEE  169 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~------~g--------vk~L~~---~~~~P-i~IFI-~pps~~~L~~L~~R---~see  169 (225)
                       ..+.|...+++|+++|.|=..      +|        +..+..   ....| .+||+ ..|--..++++.++   ....
T Consensus        76 -~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~  154 (216)
T 3tmk_A           76 -IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETV  154 (216)
T ss_dssp             -THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCH
T ss_pred             -HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHH
Confidence             345678888999999998422      11        122221   12346 78998 75432222223222   2223


Q ss_pred             HHHHHHHHHHH-HHHh---hCCCCcEEEE--CCCHHHHHHHHHHHHHh
Q psy10228        170 QAKKMYDRSMK-MEQE---FGEFFTAVVQ--GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       170 ei~~rl~~a~k-~E~~---~~~~fd~vI~--Nddleea~~~lk~iI~~  211 (225)
                      +..+++..+.. +-..   +.+.-..+|.  +.++++..++|.++|..
T Consensus       155 ~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~  202 (216)
T 3tmk_A          155 KFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP  202 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45555555431 1111   1222334555  24899999998888775

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.64  E-value=0.00081  Score=54.58  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             CeEEEEecCCHHHHHHHhccC-CHHHHHHHHHH----H-HHHHHhhCCCCcEE--EECC-CHHHHHHHHHHHHHh
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDR----S-MKMEQEFGEFFTAV--VQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~----a-~k~E~~~~~~fd~v--I~Nd-dleea~~~lk~iI~~  211 (225)
                      ..+||+.+|....++++..|. +.+++..++..    . ......+....|.+  |.|+ ++++.++++.+++..
T Consensus       131 d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          131 NRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             SEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             CeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            478999887544444565564 22222222221    1 01111223334544  6676 799999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.63  E-value=0.0056  Score=51.45  Aligned_cols=68  Identities=13%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             CCeEEEEecCCHHHHHHHhcc------CCHHHHHHHHHHHHH--HHH---hhCCCCcEEE----ECC-CHHHHHHHHHHH
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR------MTEEQAKKMYDRSMK--MEQ---EFGEFFTAVV----QGD-MPEDIYQKVKEV  208 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R------~seeei~~rl~~a~k--~E~---~~~~~fd~vI----~Nd-dleea~~~lk~i  208 (225)
                      ...+|||.++.-..++++..|      .+.+++.+++..-..  .+.   .+....|++|    .|+ ++++++++|..+
T Consensus       151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~  230 (252)
T 1uj2_A          151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI  230 (252)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred             cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence            458899998754444454433      367777666654211  111   2235678888    554 688999999888


Q ss_pred             HHhc
Q psy10228        209 IQEQ  212 (225)
Q Consensus       209 I~~~  212 (225)
                      +...
T Consensus       231 l~~~  234 (252)
T 1uj2_A          231 LNGG  234 (252)
T ss_dssp             HHC-
T ss_pred             Hccc
Confidence            8643

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.47  E-value=0.0071  Score=49.55  Aligned_cols=98  Identities=16%  Similarity=0.283  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCeEEEEccH---------------HHHHHHHh---hccCC-eEEEEecCCHHHHHHHh--ccCCHHHHH
Q psy10228        114 VASVRDVAEKGKHCILDVSG---------------NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMN--KRMTEEQAK  172 (225)
Q Consensus       114 ~~sV~~v~~~gk~~ildv~~---------------~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~--~R~seeei~  172 (225)
                      ...|...+++|+++|.|--.               +-+..|..   ..+.| .+||+..|-...+++..  .|....+..
T Consensus        72 ~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~  151 (197)
T 3hjn_A           72 VTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFL  151 (197)
T ss_dssp             HHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHH
T ss_pred             HHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHH
Confidence            35577778899999988421               11222322   13456 78888876333333322  233334555


Q ss_pred             HHHHHHH-HHHHhhCCCCcEEEEC-CCHHHHHHHHHHHHHhc
Q psy10228        173 KMYDRSM-KMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       173 ~rl~~a~-k~E~~~~~~fd~vI~N-ddleea~~~lk~iI~~~  212 (225)
                      +++..+. ++-..+.. --.+|.. .++++..++|.++|.+.
T Consensus       152 ~rv~~~y~~la~~~~~-~~~~IDa~~~~eeV~~~I~~~i~~r  192 (197)
T 3hjn_A          152 ERVREGYLVLAREHPE-RIVVLDGKRSIEEIHRDVVREVKRR  192 (197)
T ss_dssp             HHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCCC-CEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            5555443 11112222 1234443 37999999999988753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.47  E-value=0.0023  Score=52.52  Aligned_cols=76  Identities=16%  Similarity=0.034  Sum_probs=43.1

Q ss_pred             CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHH
Q psy10228        124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIY  202 (225)
Q Consensus       124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~  202 (225)
                      +..+++|+..- .. -........+|||.+|.-..++++   .     ...+..   +-.......|++|.|+ +++++.
T Consensus       111 ~~~vv~d~pll-~e-~~~~~~~d~vi~v~a~~e~r~~Rl---i-----~~q~~~---~~~~~~~~AD~vI~n~~~~~~l~  177 (192)
T 2grj_A          111 SGLIVIEAALL-KR-MGLDQLCDHVITVVASRETILKRN---R-----EADRRL---KFQEDIVPQGIVVANNSTLEDLE  177 (192)
T ss_dssp             CEEEEEECTTT-TT-TTGGGGCSEEEEEECCHHHHHHHC---S-----SHHHHH---TTCTTCCCCSEEEECSSCHHHHH
T ss_pred             CCEEEEEEece-ee-cChHHhCCEEEEEECCHHHHHHHH---H-----HhcCCc---hhhhHHhcCCEEEECCCCHHHHH
Confidence            55777775320 00 001134557899998743333223   1     101111   0012246789999988 799999


Q ss_pred             HHHHHHHHhc
Q psy10228        203 QKVKEVIQEQ  212 (225)
Q Consensus       203 ~~lk~iI~~~  212 (225)
                      .++..++...
T Consensus       178 ~~v~~~~~~l  187 (192)
T 2grj_A          178 KKVEEVMKLV  187 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.47  E-value=0.00015  Score=58.98  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=38.4

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCCCCCCCC--Ccc-eEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVD--GRD-YHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~d--G~d-Y~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      ..++|+|+||||||                 ..+++.++..|+|  |.| |+|+ . .-+.+.... ...+|..+.+ .|
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g~Ds~~~~-~-~G~~~v~i~-~~~~~~~~~~-~~   82 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELR-K-AGAAQTIVA-SQQRWALMTE-TP   82 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------CHH-H-HTCSEEEEE-CSSEEEEEEE-CS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCCCceEEEE-e-CCcceeecc-cchhheeeee-cc
Confidence            47899999999998                 5567778777776  677 6665 2 222111101 1234555443 58


Q ss_pred             eecHHHHHHHHHc
Q psy10228        111 GTSVASVRDVAEK  123 (225)
Q Consensus       111 GTs~~sV~~v~~~  123 (225)
                      |++..++++++..
T Consensus        83 ~~~~~~L~~ll~r   95 (174)
T 1np6_A           83 DEEELDLQFLASR   95 (174)
T ss_dssp             SSCCCCHHHHHHH
T ss_pred             CCchhhHHHHHHh
Confidence            9988889888855

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.40  E-value=0.0019  Score=50.46  Aligned_cols=62  Identities=8%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             CeEEEEecCCHHHHHH-HhccC-----C-----HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        146 PVAIFIKPKSVESIME-MNKRM-----T-----EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~-L~~R~-----s-----eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ..+||+..| .+.+.+ +..|.     +     .+.+...+...   +..|....|++|.|+  ++++++++|..++..
T Consensus        98 ~~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r---~~~~~~~a~~~id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A           98 GVVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANER---NPLYEEIADVTIRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             SEEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHH---HHHHHHHCSEEC-----CHHHHHHHHHHHHC-
T ss_pred             CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHH---HHHHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            367888875 455543 43331     1     23333333221   112333458888876  689999999888753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.36  E-value=0.039  Score=45.51  Aligned_cols=45  Identities=4%  Similarity=0.160  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHH----HHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        168 EEQAKKMYDRSMKM----EQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       168 eeei~~rl~~a~k~----E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      ++.+++|+....+.    ...|. .....+|..+ ++++.+++|..+|...
T Consensus       181 ~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          181 KKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            45677777654321    01222 1234556554 7999999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.30  E-value=0.0026  Score=54.39  Aligned_cols=122  Identities=9%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE-EEeCC---cce-eecHHHHHHHH---H
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA-GQYND---NLY-GTSVASVRDVA---E  122 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~-~~~~g---n~Y-GTs~~sV~~v~---~  122 (225)
                      ..|+|+|++|||||+...+-..  +.  ..|.++ +.+.+...+....- .+ ..|..   ..+ ....+.+...+   .
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~--~~--~~~~~i-~~D~~r~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   76 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA--KN--PGFYNI-NRDDYRQSIMAHEE-RDEYKYTKKKEGIVTGMQFDTAKSILYGGD   76 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH--HS--TTEEEE-CHHHHHHHHTTSCC-CC---CCHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--hC--CCcEEe-cccHHHHHhccCCc-ccccccchhhhhHHHHHHHHHHHHHHhhcc
Confidence            4689999999999933222111  00  146788 77887766543110 00 01110   000 11223455666   7


Q ss_pred             cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHH
Q psy10228        123 KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSM  179 (225)
Q Consensus       123 ~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~  179 (225)
                      .|..+|+|...   .-...+..   ..-+| .+|||.+| .+.+.+ +..|.    +++.+++++++..
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~e~i~~~~~~~~  144 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSMR  144 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence            89999998643   11222321   11134 68899885 565554 76665    4778888887763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.10  E-value=0.031  Score=47.60  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=69.5

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEEeCC-cceee-cHHHHHHHHHcCCe
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQYND-NLYGT-SVASVRDVAEKGKH  126 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~~~g-n~YGT-s~~sV~~v~~~gk~  126 (225)
                      ...|+|+|++|||||+..-.-.+   .  -.|.|+ +-+.+-.....|.-+ +...-.| ..+-. -.+.+.++......
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~---~--lg~~~~-d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~  121 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR---S--LGYTFF-DCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQ  121 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH---H--HTCEEE-EHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH---h--cCCcEE-eCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCC
Confidence            45899999999999921111000   0  135666 444443332211110 0000011 11111 11234445544123


Q ss_pred             EEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhc-----cC--CH-------HHHHHHHHHHHHH-HHh
Q psy10228        127 CILDV------SGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNK-----RM--TE-------EQAKKMYDRSMKM-EQE  184 (225)
Q Consensus       127 ~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~-----R~--se-------eei~~rl~~a~k~-E~~  184 (225)
                      +|+..      .+.....|+    ...+|||..|. +++. ++.+     |.  ..       ++..+++....+. +.-
T Consensus       122 ~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~-e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l  196 (250)
T 3nwj_A          122 VVVSTGGGAVIRPINWKYMH----KGISIWLDVPL-EALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA  196 (250)
T ss_dssp             EEEECCGGGGGSHHHHHHHT----TSEEEEEECCH-HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cEEecCCCeecCHHHHHHHh----CCcEEEEECCH-HHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence            44432      233333332    25899999864 5554 4654     22  11       1112233332211 222


Q ss_pred             hCCCCcEEE------------E--CCCHHHHHHHHHHHHHhc
Q psy10228        185 FGEFFTAVV------------Q--GDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       185 ~~~~fd~vI------------~--Nddleea~~~lk~iI~~~  212 (225)
                      |. ..|++|            .  +-++++++++|.+.|...
T Consensus       197 Y~-~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          197 YT-KASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             HT-TSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             Hh-hCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            43 488888            2  236899999998888754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.08  E-value=0.01  Score=48.44  Aligned_cols=14  Identities=7%  Similarity=-0.102  Sum_probs=12.9

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..|+|+|++|||||
T Consensus         5 ~~I~l~G~~GsGKs   18 (220)
T 1aky_A            5 IRMVLIGPPGAGKG   18 (220)
T ss_dssp             CEEEEECCTTSSHH
T ss_pred             cEEEEECCCCCCHH
Confidence            47999999999999

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.04  E-value=0.00042  Score=55.16  Aligned_cols=15  Identities=7%  Similarity=0.053  Sum_probs=13.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +..|+|+||+|||||
T Consensus         9 g~~i~l~G~~GsGKS   23 (191)
T 1zp6_A            9 GNILLLSGHPGSGKS   23 (191)
T ss_dssp             TEEEEEEECTTSCHH
T ss_pred             CeEEEEECCCCCCHH
Confidence            468999999999999

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.95  E-value=0.0027  Score=50.08  Aligned_cols=62  Identities=21%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CeEEEEecCCHHHHHH-Hhcc-----CC---HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        146 PVAIFIKPKSVESIME-MNKR-----MT---EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~-L~~R-----~s---eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ..+|||.+| .+.+.+ +..|     ..   .+.+++.+...   +..|....+.+|.++  +++++++.|...+..
T Consensus        94 ~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r---~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A           94 GFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNER---LSKYEQKANFILNIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             CEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH---HHHHHHHCSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred             CEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHH---HHHHHhcCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            478999875 455543 4333     11   23344333322   122323468888876  699999999988764

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.88  E-value=0.019  Score=48.02  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             CCeEEEEccH----HHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-
Q psy10228        124 GKHCILDVSG----NAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-  196 (225)
Q Consensus       124 gk~~ildv~~----~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-  196 (225)
                      +..|++|+-.    .|..     .+.-.+|+|.+|.-..++++.+|  .+++++.+|+..-.-.+ +.....|+||.|+ 
T Consensus       112 ~~~vv~d~pLL~E~~~~~-----~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~~Q~~~e-ek~~~AD~VIdN~~  185 (210)
T 4i1u_A          112 GPYVIFVVPLLVESRNWK-----ARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATRE-ARLAAADDVIVNDA  185 (210)
T ss_dssp             SSSEEEECTTCTTCHHHH-----HHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHSCCHH-HHHHTCSEEEECSS
T ss_pred             CCEEEEEEecccccCCcc-----ccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCC
Confidence            4578888742    2321     23557899998866666676555  58899988876532112 2235789999998 


Q ss_pred             -CHHHHHHHHHHHHHhc
Q psy10228        197 -MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 -dleea~~~lk~iI~~~  212 (225)
                       +++++..++..++...
T Consensus       186 gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          186 ATPDALAVQVDALHQRY  202 (210)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence             7999999999988754

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.52  E-value=0.0011  Score=64.06  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~i  128 (225)
                      ...|+|+|+||||||+.--.-.+.-...|..++.+ +.+.+...+..+.-  +..-.+ ..+-.-.+-++..++.|.+++
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l-DgD~iR~~L~~~~~--fs~~dree~~r~i~eva~~~l~~G~iVI  128 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-DGDNIRQGLNKNLG--FSPEDREENVRRIAEVAKLFADAGLVCI  128 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-SHHHHTTTTTTTCC--SSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe-chHHhhhccCcccc--CChhhhHHHHHHHHHHHHHHHhCCCEEE
Confidence            45799999999999921111000000125666666 55554433222110  000000 000000111233457798888


Q ss_pred             EEc-cH-----HHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccCCHHHHHH-HHHHHHHHHHhhC--CCCcEEEECC-
Q psy10228        129 LDV-SG-----NAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRMTEEQAKK-MYDRSMKMEQEFG--EFFTAVVQGD-  196 (225)
Q Consensus       129 ldv-~~-----~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~seeei~~-rl~~a~k~E~~~~--~~fd~vI~Nd-  196 (225)
                      .+. .+     +.++.+....-.| ++|||.+| .+++.+ +.+++-. ..+. .+.........|.  ...|.+|.++ 
T Consensus       129 ~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~-~aR~~~~~~~~~~~~~Ye~p~~~dlvIDts~  206 (630)
T 1x6v_B          129 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYK-KARAGEIKGFTGIDSEYEKPEAPELVLKTDS  206 (630)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHH-HHTTC----CBTTTBCCCCCSSCSEEEETTS
T ss_pred             EeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccch-hhhhhhHHHHHHhhhhhcccCCCcEEEECCC
Confidence            872 22     2233332222234 68999886 455543 3322100 0000 0000000111122  3467888775 


Q ss_pred             -CHHHHHHHHHHHHHhc
Q psy10228        197 -MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 -dleea~~~lk~iI~~~  212 (225)
                       ++++++++|.+.|...
T Consensus       207 ~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          207 CDVNDCVQQVVELLQER  223 (630)
T ss_dssp             SCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence             7999999999999764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.26  E-value=0.0006  Score=57.68  Aligned_cols=104  Identities=10%  Similarity=0.049  Sum_probs=49.8

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC--------CcEEEEEEeCCcceeec-HHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN--------HLFIEAGQYNDNLYGTS-VASVRDV  120 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~--------~~FiE~~~~~gn~YGTs-~~sV~~v  120 (225)
                      ...|+|+||+|||||+..-.-.+   .-|..++|+ +.+.+...+..        |.-+  ..+..+.+|.. ...++..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~---~l~~~~~~~-~~D~~r~~~~~~~~i~~~~g~~~--~~~~~~~~~~~~~~~~~~~  105 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK---EFQGNIVII-DGDSFRSQHPHYLELQQEYGKDS--VEYTKDFAGKMVESLVTKL  105 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH---HTTTCCEEE-CGGGGGTTSTTHHHHHTTCSSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH---hcCCCcEEE-ecHHHHHhchhHHHHHHHcCchH--HHHhhHHHHHHHHHHHHHH
Confidence            35799999999999922111100   011246777 66666443211        1000  00000112222 2334455


Q ss_pred             HHcCCeEEEEccHHHH-------HHHHhhccCCeEEEEecCCHHHHH
Q psy10228        121 AEKGKHCILDVSGNAI-------KRLQVASLYPVAIFIKPKSVESIM  160 (225)
Q Consensus       121 ~~~gk~~ildv~~~gv-------k~L~~~~~~Pi~IFI~pps~~~L~  160 (225)
                      ++.|..+|+|..+.+.       +.++..+.....||+.+| .+.+.
T Consensus       106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~-~e~~~  151 (253)
T 2p5t_B          106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK-PELSY  151 (253)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC-HHHHH
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHH
Confidence            6778889999654322       223333333345677664 45443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.70  E-value=1.1  Score=37.58  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=36.3

Q ss_pred             CeEEEEecCCHHHHHH----Hhcc---CCHHHHHHHHHHHHHHHHh--hCC--CCc--EEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIME----MNKR---MTEEQAKKMYDRSMKMEQE--FGE--FFT--AVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~----L~~R---~seeei~~rl~~a~k~E~~--~~~--~fd--~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ++-|||.++--...++    |..+   .+.+++.+.+..-.+.+..  +++  .++  .+|.+.  +++++++.|..++.
T Consensus       147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~  226 (233)
T 3r20_A          147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVT  226 (233)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence            4889999964332333    2222   2566665544443333332  222  343  555555  68999999999887


Q ss_pred             hcc
Q psy10228        211 EQS  213 (225)
Q Consensus       211 ~~~  213 (225)
                      ...
T Consensus       227 ~~~  229 (233)
T 3r20_A          227 AQA  229 (233)
T ss_dssp             ---
T ss_pred             Hhh
Confidence            543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=92.84  E-value=0.046  Score=51.35  Aligned_cols=47  Identities=6%  Similarity=-0.009  Sum_probs=26.6

Q ss_pred             CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC
Q psy10228         49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN   96 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~   96 (225)
                      ....|+++|.+|||||+..-+-.+.-...|.+...+ +.+++......
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~-s~D~~r~~~~~   80 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVF-NVGEYRREAVK   80 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEe-cccHHHHHhcc
Confidence            346899999999999922111111111235555555 56666655543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=92.73  E-value=0.015  Score=55.36  Aligned_cols=143  Identities=10%  Similarity=0.089  Sum_probs=70.9

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCC-cceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecH----------HHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDG-RDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSV----------ASVR  118 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG-~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~----------~sV~  118 (225)
                      ...|+|+|+||||||+.--.--+.-...| ..++++ +-+.+...+..          +..| +..          .-++
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l-D~D~ir~~l~~----------~~~f-~~~er~~~i~ri~~v~~  463 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL-LGDTVRHELSS----------ELGF-TREDRHTNIQRIAFVAT  463 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE-EHHHHHHHTCT----------TCCC-SHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE-CcHHHHHHhcc----------ccCC-ChhHHHHHHHHHHHHHH
Confidence            35789999999999821111000000113 667777 66666654321          1111 111          1344


Q ss_pred             HHHHcCCeEEEEcc-H-H----HHHHHHhhccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHH------hh
Q psy10228        119 DVAEKGKHCILDVS-G-N----AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQ------EF  185 (225)
Q Consensus       119 ~v~~~gk~~ildv~-~-~----gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~------~~  185 (225)
                      ..++.|..+|.+.- + +    .++.+.. ..-+ +.|||.+| .+++.+-..+.--..     .++.+++.      .|
T Consensus       464 ~~~~~g~~VI~~~is~~~~~R~~~r~l~~-~~g~~~~V~Lda~-~ev~~~R~~r~l~~~-----~~~~~i~~~~~~r~~~  536 (573)
T 1m8p_A          464 ELTRAGAAVIAAPIAPYEESRKFARDAVS-QAGSFFLVHVATP-LEHCEQSDKRGIYAA-----ARRGEIKGFTGVDDPY  536 (573)
T ss_dssp             HHHHTTCEEEEECCCCCHHHHHHHHHHHH-TTSEEEEEEECCC-HHHHHHHCSSCHHHH-----HHTTSSSSCBTTTBCC
T ss_pred             HHHhCCCEEEEEcCCCcHHHHHHHHHHHH-hcCCeEEEEEeCC-HHHHHHHhcccchhh-----hhHHHHHHHHhccccc
Confidence            55677988888742 2 1    2222211 1112 78999875 455543111210000     01101110      11


Q ss_pred             C--CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        186 G--EFFTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       186 ~--~~fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      .  ...|.+|.++  ++++++++|...|..
T Consensus       537 ~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          537 ETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             CCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            1  2346777655  699999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.98  E-value=0.79  Score=36.07  Aligned_cols=65  Identities=8%  Similarity=0.026  Sum_probs=41.5

Q ss_pred             CeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhh-CCCCc-EEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEF-GEFFT-AVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~-~~~fd-~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ..+|||.+|.-..++++..|.  +.+++.+++..-......+ ....| ++|.|+  ++++++++|.+++.
T Consensus       137 d~~i~l~a~~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          137 AHKFYLTASPEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             SEEEEEECCHHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            378999987544455565554  5667766665421111111 34566 888887  69999999998875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=90.95  E-value=0.06  Score=43.37  Aligned_cols=34  Identities=12%  Similarity=-0.031  Sum_probs=16.4

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCCCCCCCC---CcceEEe
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVD---GRDYHFV   84 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~d---G~dY~FV   84 (225)
                      ..+.|+|+||||||                 ...+..|...++|   |+|++.+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~   58 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRH   58 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHH
Confidence            36889999999999                 4455666656654   7777655

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=90.54  E-value=0.063  Score=42.31  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=66.3

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHH----HHHHHHcCC
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVAS----VRDVAEKGK  125 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~s----V~~v~~~gk  125 (225)
                      ++.++|+||||||||+.--.     -..|..  .+ +.+.+...+....      +.....|+..+.    ....+..|.
T Consensus         9 gei~~l~G~nGsGKSTl~~~-----~~~~~~--~~-~~d~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~   74 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKK-----HFKPTE--VI-SSDFCRGLMSDDE------NDQTVTGAAFDVLHYIVSKRLQLGK   74 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHH-----HSCGGG--EE-EHHHHHHHHCSST------TCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHH-----HccCCe--EE-ccHHHHHHhcCcc------cchhhHHHHHHHHHHHHHHHHhCCC
Confidence            56899999999999921110     012322  24 4555544433221      111122332322    334456677


Q ss_pred             eEEEEc---cHHHHHH-HHhh---ccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHHHHHHhh-CCCCcEE
Q psy10228        126 HCILDV---SGNAIKR-LQVA---SLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSMKMEQEF-GEFFTAV  192 (225)
Q Consensus       126 ~~ildv---~~~gvk~-L~~~---~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~k~E~~~-~~~fd~v  192 (225)
                      ..++|-   ...|-++ +..+   ...|.+++++-|. ..|.. ...|.    .++.+........++=... .+.++.+
T Consensus        75 ~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt-~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi  153 (171)
T 4gp7_A           75 LTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPE-KVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYV  153 (171)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCH-HHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEE
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCH-HHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEE
Confidence            777763   2233222 2222   2357788888775 44443 44443    3444432222221110001 1357888


Q ss_pred             EECCCHHHHH
Q psy10228        193 VQGDMPEDIY  202 (225)
Q Consensus       193 I~Nddleea~  202 (225)
                      ++-+|++++.
T Consensus       154 ~vtH~~~~~~  163 (171)
T 4gp7_A          154 YILNSPEEVE  163 (171)
T ss_dssp             EEECSHHHHH
T ss_pred             EEeCCHHHhh
Confidence            8888888764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=90.18  E-value=0.19  Score=40.51  Aligned_cols=66  Identities=11%  Similarity=0.163  Sum_probs=42.1

Q ss_pred             CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      ...+|||.+|.-..++++..|  .+.+++.+++...... ..+...+|++|.|+ ++++++++|.+++..
T Consensus       126 ~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~-~~~~~~ad~vId~~~~~~~~~~~I~~~l~~  194 (218)
T 1vht_A          126 ANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATR-EARLAVADDVIDNNGAPDAIASDVARLHAH  194 (218)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHSCCH-HHHHHHCSEEEECSSCTTSHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCh-HHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence            348899998643333446555  4677777776652111 12223468899887 688888888888764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=89.25  E-value=0.11  Score=47.31  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEec
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFVS   85 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV~   85 (225)
                      .-++|+|++|+|||                 +.|||.+..+  +.+|.++.+++
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~D  234 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD  234 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESS
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEE
Confidence            46899999999999                 6789988776  45788888873

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=89.24  E-value=0.14  Score=41.34  Aligned_cols=52  Identities=8%  Similarity=-0.052  Sum_probs=31.9

Q ss_pred             ccCCeEEEEecCCHHHHHHHhcc----C-CHHHHHHHHHHHHHH----HHhhCCCCcEEEE
Q psy10228        143 SLYPVAIFIKPKSVESIMEMNKR----M-TEEQAKKMYDRSMKM----EQEFGEFFTAVVQ  194 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~L~~R----~-seeei~~rl~~a~k~----E~~~~~~fd~vI~  194 (225)
                      ...-..|||..|....++++.+|    + +.+++..++.....-    ........|+||.
T Consensus       146 ~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~  206 (208)
T 3c8u_A          146 AIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP  206 (208)
T ss_dssp             GTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC
T ss_pred             HhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEee
Confidence            34557899998865545554333    3 777887777643222    1233567888774

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=89.03  E-value=0.11  Score=41.63  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=18.6

Q ss_pred             CcEEEECC---CHHHHHHHHHHHHHhc
Q psy10228        189 FTAVVQGD---MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       189 fd~vI~Nd---dleea~~~lk~iI~~~  212 (225)
                      .+.+|..+   ++++++++|...|...
T Consensus       169 ~~~~idt~~~~~~~e~v~~i~~~l~~~  195 (200)
T 3uie_A          169 CEISLGREGGTSPIEMAEKVVGYLDNK  195 (200)
T ss_dssp             CSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence            46677643   7899999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.74  E-value=0.039  Score=45.24  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=35.5

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      ..=++|+|+||+|||+.+..-.+.    |  |.+| +          .+.+.-...++.++|++.+.++..+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r----G--~~lv-a----------DD~v~i~~~~~~l~g~~p~~l~~~i   70 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR----G--HQLV-C----------DDVIDLKQENNQLIGSCPSVANGYI   70 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT----T--CEEE-E----------SSEEEEEESSSCEEEECCTTTTTEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc----C--CeEe-c----------CCEEEEEEeCCEEEEeCchHhhhhe
Confidence            456899999999999544433321    2  4566 3          3566666677778888766544433

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=86.55  E-value=0.2  Score=41.87  Aligned_cols=17  Identities=6%  Similarity=-0.015  Sum_probs=14.9

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||||||||
T Consensus        29 ~~Ge~~~iiG~nGsGKS   45 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKS   45 (235)
T ss_dssp             CTTCEEEEECSTTSSHH
T ss_pred             cCCCEEEEECCCCCcHH
Confidence            34678999999999999

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=85.46  E-value=0.21  Score=39.91  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             ccCCeEEEEecCCHHHHHH-Hh----ccC-CHHHHHHHHH-HHHHHH----HhhCCCCcEEEECC-C----HHHHHHHHH
Q psy10228        143 SLYPVAIFIKPKSVESIME-MN----KRM-TEEQAKKMYD-RSMKME----QEFGEFFTAVVQGD-M----PEDIYQKVK  206 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~-L~----~R~-seeei~~rl~-~a~k~E----~~~~~~fd~vI~Nd-d----leea~~~lk  206 (225)
                      .+.-.+|||.++....+.+ +.    .++ +...+..++. +.....    ..+....|+||.|+ +    ++.+..+|.
T Consensus       123 ~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~  202 (211)
T 3asz_A          123 DLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKAL  202 (211)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHT
T ss_pred             HhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHH
Confidence            4556889999987666665 32    223 4444433322 221111    12335789999987 4    666666666


Q ss_pred             HHHH
Q psy10228        207 EVIQ  210 (225)
Q Consensus       207 ~iI~  210 (225)
                      .++.
T Consensus       203 ~~~~  206 (211)
T 3asz_A          203 ARLA  206 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=85.33  E-value=0.38  Score=37.20  Aligned_cols=16  Identities=0%  Similarity=-0.074  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      ..+.++|+||+|+|||
T Consensus        35 ~g~~~~l~G~~G~GKT   50 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKS   50 (149)
T ss_dssp             CCSEEEEESSSTTTTC
T ss_pred             CCCEEEEECCCCCCHH
Confidence            4568999999999999

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=85.09  E-value=0.077  Score=46.96  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA  121 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~  121 (225)
                      +.=++|+|+||+|||+++..-.+.    |  |.+| +          ++.+.-...+|..||++.+.++..+
T Consensus       147 g~gvli~G~sG~GKStlal~l~~~----G--~~lv-~----------DD~v~i~~~~~~l~g~~p~~l~~~i  201 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLINK----N--HLFV-G----------DDAIEIYRLGNRLFGRAQEVAKKFM  201 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT----T--CEEE-E----------EEEEEEEEETTEEEEEECTTTTTEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc----C--CEEE-e----------CCEEEEEEeCCeEEEeCchHhcCce
Confidence            456899999999999555443322    2  4566 3          3466666667778888766554433

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=84.92  E-value=0.28  Score=39.32  Aligned_cols=15  Identities=13%  Similarity=-0.179  Sum_probs=13.9

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .+.+.|+||||||||
T Consensus        25 G~~~~l~G~nGsGKS   39 (231)
T 4a74_A           25 QAITEVFGEFGSGKT   39 (231)
T ss_dssp             SEEEEEEESTTSSHH
T ss_pred             CcEEEEECCCCCCHH
Confidence            568999999999999

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=84.39  E-value=0.24  Score=42.09  Aligned_cols=16  Identities=0%  Similarity=-0.035  Sum_probs=14.2

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .+..++|+||||||||
T Consensus        24 ~g~~v~i~Gp~GsGKS   39 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKS   39 (261)
T ss_dssp             SSEEEEEECSTTCSHH
T ss_pred             CCCEEEEECCCCccHH
Confidence            3568999999999999

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=84.28  E-value=0.25  Score=39.84  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=36.1

Q ss_pred             CCeEEEEecCCHHHHHH----HhccC---CHHHHHHHHHH----HHHHHHh-hCCCC-cEEEECC--CHHHHHHHHHHHH
Q psy10228        145 YPVAIFIKPKSVESIME----MNKRM---TEEQAKKMYDR----SMKMEQE-FGEFF-TAVVQGD--MPEDIYQKVKEVI  209 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~----L~~R~---seeei~~rl~~----a~k~E~~-~~~~f-d~vI~Nd--dleea~~~lk~iI  209 (225)
                      ..++||+.+|.-..+++    +..|+   +.+++.+.+..    ....+.. ....+ +++|.|+  ++++++++|.+++
T Consensus       141 ~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l  220 (227)
T 1cke_A          141 APVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYA  220 (227)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            34889999976444444    22444   34444333332    1110111 11222 2777777  6999999999988


Q ss_pred             Hh
Q psy10228        210 QE  211 (225)
Q Consensus       210 ~~  211 (225)
                      ..
T Consensus       221 ~~  222 (227)
T 1cke_A          221 RQ  222 (227)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=83.35  E-value=0.31  Score=40.33  Aligned_cols=16  Identities=6%  Similarity=-0.058  Sum_probs=14.2

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        29 ~Ge~~~iiG~nGsGKS   44 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKS   44 (224)
T ss_dssp             TTCEEEEEECTTSCHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=83.32  E-value=0.3  Score=40.38  Aligned_cols=15  Identities=0%  Similarity=-0.237  Sum_probs=13.6

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...|+|+||+|||||
T Consensus        27 ~~~i~l~G~~GsGKS   41 (246)
T 2bbw_A           27 LLRAVILGPPGSGKG   41 (246)
T ss_dssp             CCEEEEECCTTSSHH
T ss_pred             CcEEEEECCCCCCHH
Confidence            358999999999999

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=83.09  E-value=0.5  Score=38.76  Aligned_cols=27  Identities=11%  Similarity=-0.086  Sum_probs=20.1

Q ss_pred             CccEEEEccCCCCCC------CcccCCCCCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT------EDTTRARREYEVDG   78 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------s~TTRp~R~~E~dG   78 (225)
                      ++.+.|+||+|||||      .--  +|-.|++.+
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~   54 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR   54 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee
Confidence            468899999999999      222  456677755

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=83.03  E-value=0.29  Score=38.26  Aligned_cols=15  Identities=7%  Similarity=-0.053  Sum_probs=13.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      .+.++|+||+|+|||
T Consensus        38 g~~~~l~G~~G~GKT   52 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKT   52 (180)
T ss_dssp             CCEEEECCSSSSSHH
T ss_pred             CCEEEEECCCCCCHH
Confidence            468999999999999

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=83.02  E-value=0.42  Score=39.84  Aligned_cols=16  Identities=6%  Similarity=-0.064  Sum_probs=13.9

Q ss_pred             CccEEEEccCCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTTE   65 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s   65 (225)
                      ...|+|+||||+|||+
T Consensus        34 g~~ilI~GpsGsGKSt   49 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSE   49 (205)
T ss_dssp             TEEEEEECCCTTTTHH
T ss_pred             CEEEEEECCCCCCHHH
Confidence            4679999999999983

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=82.63  E-value=1.8  Score=37.57  Aligned_cols=13  Identities=0%  Similarity=-0.066  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .+++.||+|+||+
T Consensus        26 a~L~~G~~G~GKt   38 (334)
T 1a5t_A           26 ALLIQALPGMGDD   38 (334)
T ss_dssp             EEEEECCTTSCHH
T ss_pred             eEEEECCCCchHH
Confidence            5899999999998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=82.61  E-value=0.38  Score=40.17  Aligned_cols=16  Identities=0%  Similarity=-0.164  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        30 ~Ge~~~i~G~nGsGKS   45 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKS   45 (237)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=82.51  E-value=0.38  Score=40.82  Aligned_cols=17  Identities=0%  Similarity=-0.017  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++++.|+||||||||
T Consensus        30 ~~Ge~~~liG~nGsGKS   46 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKS   46 (262)
T ss_dssp             CTTCEEEEECCTTSSHH
T ss_pred             cCCCEEEEECCCCCCHH
Confidence            34678999999999999

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=82.28  E-value=0.39  Score=40.17  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             CeEEEEecCCHHHHHH-H---hc-c--CCHHHHHHHHHHHHHHH--Hhh---CCCCc-EEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIME-M---NK-R--MTEEQAKKMYDRSMKME--QEF---GEFFT-AVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~-L---~~-R--~seeei~~rl~~a~k~E--~~~---~~~fd-~vI~Nd--dleea~~~lk~iI~  210 (225)
                      .+.|||.++....+++ +   .. +  .+.+++.+.+..-...+  ...   ....| ++|.|+  ++++++++|.++|.
T Consensus       164 ~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~  243 (252)
T 4e22_A          164 PVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQ  243 (252)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence            4789999864333333 2   12 2  25566554443221111  111   23455 666676  69999999999998


Q ss_pred             hcc
Q psy10228        211 EQS  213 (225)
Q Consensus       211 ~~~  213 (225)
                      ...
T Consensus       244 ~~~  246 (252)
T 4e22_A          244 RIL  246 (252)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=82.24  E-value=0.36  Score=41.50  Aligned_cols=16  Identities=6%  Similarity=-0.170  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++++.|+||||||||
T Consensus        33 ~Ge~~~iiGpnGsGKS   48 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKS   48 (275)
T ss_dssp             TTSEEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3578999999999999

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=82.07  E-value=0.37  Score=41.06  Aligned_cols=16  Identities=6%  Similarity=-0.031  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        36 ~Ge~~~liG~nGsGKS   51 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKS   51 (266)
T ss_dssp             TTCEEEEECCTTSCHH
T ss_pred             CCCEEEEECCCCCcHH
Confidence            3578999999999999

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=81.87  E-value=4.8  Score=33.68  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             HHHHHHHc---CCeEEEEccH---HHHHHHHhhccCC-eEEEEecCCHHHHHHHhccC----------------------
Q psy10228        116 SVRDVAEK---GKHCILDVSG---NAIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM----------------------  166 (225)
Q Consensus       116 sV~~v~~~---gk~~ildv~~---~gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~----------------------  166 (225)
                      -|++.+.+   ++-.|||--|   .-+..|......| .+|||..|.-..+++|..|.                      
T Consensus        75 ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~  154 (230)
T 3gmt_A           75 LVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKD  154 (230)
T ss_dssp             HHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBC
T ss_pred             HHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcC
Confidence            34444443   3456777533   2233444333344 68888887644455565441                      


Q ss_pred             -------------CHHHHHHHHHHHHHHHH----hhCCC-----------CcEEEECC--CHHHHHHHHHHHHHh
Q psy10228        167 -------------TEEQAKKMYDRSMKMEQ----EFGEF-----------FTAVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       167 -------------seeei~~rl~~a~k~E~----~~~~~-----------fd~vI~Nd--dleea~~~lk~iI~~  211 (225)
                                   +++.+++||+...+.-.    -|...           --++.+|.  ++++.+++|..+|.+
T Consensus       155 d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          155 DVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             TTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             CCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence                         36789999988753211    12110           11233443  789999999888754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=81.85  E-value=0.42  Score=36.34  Aligned_cols=15  Identities=13%  Similarity=-0.084  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...++|+||+|+|||
T Consensus        43 ~~~~ll~G~~G~GKT   57 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKT   57 (195)
T ss_dssp             SCEEEEECCTTSCHH
T ss_pred             CCceEEECCCCCCHH
Confidence            457999999999999

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=81.81  E-value=0.41  Score=42.99  Aligned_cols=17  Identities=12%  Similarity=-0.001  Sum_probs=14.9

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++++.|+||||||||
T Consensus        28 ~~Ge~~~llGpsGsGKS   44 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKT   44 (359)
T ss_dssp             CTTCEEEEEESTTSSHH
T ss_pred             cCCCEEEEECCCCchHH
Confidence            34679999999999999

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=81.69  E-value=0.48  Score=35.97  Aligned_cols=15  Identities=7%  Similarity=-0.104  Sum_probs=13.7

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ..+++|.||+|+||+
T Consensus        24 ~~~vll~G~~GtGKt   38 (145)
T 3n70_A           24 DIAVWLYGAPGTGRM   38 (145)
T ss_dssp             CSCEEEESSTTSSHH
T ss_pred             CCCEEEECCCCCCHH
Confidence            458999999999999

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=81.51  E-value=0.4  Score=40.05  Aligned_cols=16  Identities=0%  Similarity=-0.062  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        27 ~Ge~~~i~G~nGsGKS   42 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKS   42 (243)
T ss_dssp             TTEEEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            4568999999999999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=81.42  E-value=0.4  Score=40.32  Aligned_cols=16  Identities=6%  Similarity=-0.027  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        34 ~Ge~~~i~G~nGsGKS   49 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKS   49 (247)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=81.15  E-value=0.44  Score=38.33  Aligned_cols=14  Identities=7%  Similarity=-0.206  Sum_probs=12.9

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ..|+|+|++|||||
T Consensus         5 ~~I~i~G~~GSGKS   18 (218)
T 1vht_A            5 YIVALTGGIGSGKS   18 (218)
T ss_dssp             EEEEEECCTTSCHH
T ss_pred             eEEEEECCCCCCHH
Confidence            47899999999999

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=81.11  E-value=0.5  Score=41.26  Aligned_cols=18  Identities=0%  Similarity=-0.322  Sum_probs=15.2

Q ss_pred             CCCCccEEEEccCCCCCC
Q psy10228         47 GSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~   64 (225)
                      .....+|.|+||||||||
T Consensus        87 ~~~g~ivgI~G~sGsGKS  104 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKS  104 (312)
T ss_dssp             SCCCEEEEEECCTTSCHH
T ss_pred             CCCCEEEEEECCCCchHH
Confidence            344678999999999999

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=81.03  E-value=0.39  Score=38.31  Aligned_cols=13  Identities=8%  Similarity=-0.020  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .+.|+||+|||||
T Consensus         2 ~i~l~G~nGsGKT   14 (178)
T 1ye8_A            2 KIIITGEPGVGKT   14 (178)
T ss_dssp             EEEEECCTTSSHH
T ss_pred             EEEEECCCCCCHH
Confidence            4789999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=80.84  E-value=0.44  Score=39.38  Aligned_cols=16  Identities=6%  Similarity=-0.178  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        34 ~Ge~~~iiG~NGsGKS   49 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKT   49 (214)
T ss_dssp             TTCCEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=80.80  E-value=0.48  Score=40.45  Aligned_cols=17  Identities=6%  Similarity=-0.109  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||||||||
T Consensus        43 ~~Ge~~~i~G~nGsGKS   59 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKS   59 (271)
T ss_dssp             CTTCEEEEECSTTSSHH
T ss_pred             CCCCEEEEECCCCCCHH
Confidence            34578999999999999

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=80.80  E-value=0.48  Score=40.40  Aligned_cols=17  Identities=6%  Similarity=0.053  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||+|||||
T Consensus        48 ~~Gei~~liG~NGsGKS   64 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKS   64 (263)
T ss_dssp             CTTCEEEEECCTTSSHH
T ss_pred             cCCCEEEEEcCCCCcHH
Confidence            34678999999999999

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=80.72  E-value=0.44  Score=40.81  Aligned_cols=14  Identities=0%  Similarity=-0.180  Sum_probs=12.3

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-++|.||+|+|||
T Consensus        37 ~~lLl~GppGtGKT   50 (293)
T 3t15_A           37 LILGIWGGKGQGKS   50 (293)
T ss_dssp             SEEEEEECTTSCHH
T ss_pred             eEEEEECCCCCCHH
Confidence            45788899999999

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=80.72  E-value=0.44  Score=40.22  Aligned_cols=16  Identities=0%  Similarity=0.005  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        32 ~Ge~~~liG~nGsGKS   47 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKS   47 (257)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            4568999999999999

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=80.69  E-value=0.49  Score=40.11  Aligned_cols=16  Identities=6%  Similarity=-0.033  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        45 ~Ge~~~i~G~nGsGKS   60 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKS   60 (260)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            4568999999999999

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=80.59  E-value=0.45  Score=39.75  Aligned_cols=16  Identities=13%  Similarity=-0.033  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        31 ~Ge~~~l~G~nGsGKS   46 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKT   46 (240)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=80.55  E-value=0.51  Score=41.09  Aligned_cols=16  Identities=6%  Similarity=-0.045  Sum_probs=14.2

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      ..+.+.|+||||||||
T Consensus       101 ~g~vi~lvG~nGsGKT  116 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKT  116 (304)
T ss_dssp             SSSEEEEECSTTSSHH
T ss_pred             CCeEEEEECCCCCcHH
Confidence            3568999999999999

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=80.32  E-value=0.46  Score=39.37  Aligned_cols=16  Identities=6%  Similarity=0.003  Sum_probs=14.3

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||+|||||
T Consensus        33 ~Ge~~~i~G~nGsGKS   48 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKT   48 (229)
T ss_dssp             TTCEEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3568999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	7e-30
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	3e-12

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (269), Expect = 7e-30
 Identities = 109/159 (68%), Positives = 140/159 (88%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 41  TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 100

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF 
Sbjct: 101 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 160

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 161 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 199

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV G  Y FV+  E  E   ++     A +   N YGTS  ++  V   G  
Sbjct: 38  TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA-EVFGNYYGTSREAIEQVLATGVD 96

Query: 127 CILDVSGNAIKRL-QVASLYPVAIFIKPKSVESIMEMNKRMTE-EQAKKMYDRSMKMEQE 184
             LD+     +++ Q          + P  +E    +  R  + E+           E  
Sbjct: 97  VFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMS 156

Query: 185 FGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
               +  ++  D  +     +K +I+ +
Sbjct: 157 HYAEYDYLIVNDDFDTALTDLKTIIRAE 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	100.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	100.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	100.0
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	100.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.37
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	98.26
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.26
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.03
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.03
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.99
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.96
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.86
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.85
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.83
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.78
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.69
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.62
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.6
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.45
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.36
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.34
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.31
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.3
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.14
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.12
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.1
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.03
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.97
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.95
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.92
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.81
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.16
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.99
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.83
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.65
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.08
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.56
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.17
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.84
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.68
d2awna2	232	Maltose transport protein MalK, N-terminal domain	90.62
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	90.13
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	90.04
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	89.17
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	88.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	88.79
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	88.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	88.45
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.13
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	87.85
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	87.49
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	87.36
d1nrjb_	209	Signal recognition particle receptor beta-subunit	86.86
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	86.81
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	86.29
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	86.02
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	85.68
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	85.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	85.24
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	85.16
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	85.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	83.92
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	83.69
d1vmaa2	213	GTPase domain of the signal recognition particle r	83.66
d2qy9a2	211	GTPase domain of the signal recognition particle r	83.27
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	83.21
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	83.18
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	83.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.1
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	82.98
d1okkd2	207	GTPase domain of the signal recognition particle r	82.92
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	82.9
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	82.55
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	82.54
d1j8yf2	211	GTPase domain of the signal sequence recognition p	82.25
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	82.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	82.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	81.88
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	81.57
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	81.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	81.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	80.66
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	80.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	80.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	80.19

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.4e-53  Score=353.24  Aligned_cols=176  Identities=63%  Similarity=1.022  Sum_probs=168.7

Q ss_pred             CCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228         47 GSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN  108 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn  108 (225)
                      ..+.+||||+||+   |+                  ||||||||+||+||+|||||+++++|+++|++|.|+||++|+||
T Consensus         6 ~~~~Rpivi~Gp~---K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~   82 (199)
T d1kjwa2           6 VHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH   82 (199)
T ss_dssp             CCSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCCEEEECcC---HHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCC
Confidence            4567999999994   66                  99999999999999999999778999999999999999999999


Q ss_pred             ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCC
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEF  188 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~  188 (225)
                      +|||++++|+.++++|++||+|++++|+.+|+.....|++|||.|||.+.+++|++|++++++++|+++|.++|+++.++
T Consensus        83 ~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~e~~~~~~  162 (199)
T d1kjwa2          83 LYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTEC  162 (199)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHhhhccccHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999888899999999999999999999999999999999998889999999


Q ss_pred             CcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228        189 FTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL  225 (225)
Q Consensus       189 fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~  225 (225)
                      ||++|+|||+++|+++|+++|.+++++|+|||+.++|
T Consensus       163 fd~vI~Nddle~a~~~l~~iI~~~~~~~~WvP~~~~~  199 (199)
T d1kjwa2         163 FSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL  199 (199)
T ss_dssp             CSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHHHhcCCCeeecCcccC
Confidence            9999999999999999999999999999999999986

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-48  Score=326.93  Aligned_cols=161  Identities=22%  Similarity=0.331  Sum_probs=151.9

Q ss_pred             CccEEEEccCCCCCC-------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228         50 QEPFMLCYTQDDPTT-------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY  110 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y  110 (225)
                      +.+|||+|||||||+                   ||||||||+||++|+||||| |+++|++++++|.|+||++++||+|
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fv-s~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceee-cHHHHHHHhhhhhheeEEEECCcee
Confidence            468999999999998                   99999999999999999999 9999999999999999999999999


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~  187 (225)
                      ||++++|..++++|++||+|++++|++.++.....|++|||.|||.++|++ |.+|+  +++.+++|+.+|. .|+.+.+
T Consensus        81 Gt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~-~E~~~~~  159 (205)
T d1s96a_          81 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAV-AEMSHYA  159 (205)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHH-HHHTTGG
T ss_pred             ccccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHH-HHHHHHh
Confidence            999999999999999999999999999999888888999999999999986 99987  4678999999985 5888889


Q ss_pred             CCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        188 FFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       188 ~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                      .||+||+|||+++|+.+|++||..+
T Consensus       160 ~fD~vIvNddl~~a~~el~~iI~~e  184 (205)
T d1s96a_         160 EYDYLIVNDDFDTALTDLKTIIRAE  184 (205)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-46  Score=304.99  Aligned_cols=157  Identities=25%  Similarity=0.471  Sum_probs=137.7

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      .++|||+|||||||+                  +|||||||+||++|+||||| |+++|++++++|.|+||++++|++||
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fv-s~~~F~~~~~~g~fie~~~~~g~~YG   81 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMYG   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceee-ehhhhhhheecCceEEEeeeccccee
Confidence            368999999999998                  99999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcE
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTA  191 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~  191 (225)
                      |++++|++++++|++||+|++++|++.++.....|++|||.||+++.     .+.+++.++++.+++..+|..++++||+
T Consensus        82 t~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~~~-----~~~~~~~~~r~~~~~~~~e~~~~~~fD~  156 (178)
T d1kgda_          82 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITP-----GLNEDESLQRLQKESDILQRTYAHYFDL  156 (178)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCT-----TSCCSHHHHHHHHHHHHHHHHHGGGCSE
T ss_pred             eeeecccchhccCceEEeccchhhhhhhhccccccceeeEecccccc-----ccchHHHHHHHHHHHHHHHHHhhcCCCE
Confidence            99999999999999999999999999998888889999999998542     1223455555555665677888899999


Q ss_pred             EEECCCHHHHHHHHHHHHHhc
Q psy10228        192 VVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       192 vI~Nddleea~~~lk~iI~~~  212 (225)
                      +|+|||+|+|+++|+++|+..
T Consensus       157 vIvNddle~a~~el~~iI~~~  177 (178)
T d1kgda_         157 TIINNEIDETIRHLEEAVELV  177 (178)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHh
Confidence            999999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-44  Score=292.71  Aligned_cols=162  Identities=31%  Similarity=0.517  Sum_probs=148.8

Q ss_pred             CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228         50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG  111 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG  111 (225)
                      ++||||+|||||||+                  +|||||||+||++|+||||| |+++|+.++++|.|+||++++|++||
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fv-s~~~f~~~~~~g~f~e~~~~~g~~Yg   79 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceec-cHHHHHHHHhcccceeeeEEccceee
Confidence            479999999999998                  89999999999999999999 99999999999999999999999999


Q ss_pred             ecHHHHHHHHHcCCeEEEEccHHHHHHHHhh-ccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHH-HHHHhhC
Q psy10228        112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVA-SLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSM-KMEQEFG  186 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~-~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~-k~E~~~~  186 (225)
                      |++.+|..++.+|++||++++++|+..++.. ...|++||+.||+.+.|++ |++|+  ++++|.+|+.++. +++....
T Consensus        80 ~~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~~  159 (186)
T d1gkya_          80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAET  159 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999863 6678999999999999987 88887  5789999999874 2334456


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228        187 EFFTAVVQGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~vI~Nddleea~~~lk~iI~~~  212 (225)
                      +.||+||+|+|+++|+++|+++|..+
T Consensus       160 ~~fd~vI~N~dle~a~~~l~~iI~~e  185 (186)
T d1gkya_         160 GAHDKVIVNDDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             TCSSEEEECSSHHHHHHHHHHHHHTC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHHhc
Confidence            78999999999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-42  Score=283.62  Aligned_cols=158  Identities=23%  Similarity=0.312  Sum_probs=149.5

Q ss_pred             CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcc--e
Q psy10228         50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL--Y  110 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~--Y  110 (225)
                      +++|||+|||||||+                 |||||+||++|++|+||||| |.++|++++..|.|+||+.+++|+  |
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fv-s~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeec-cchhhhhhhcccccchhhhcccCcccc
Confidence            568999999999998                 99999999999999999999 999999999999999999999875  5


Q ss_pred             eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228        111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~  187 (225)
                      ||+..++..++..|++|+++++++|+..++.....|++|||.|||.++|++ |.+|+  +++++++|++++ +.|+.+.+
T Consensus        81 g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~-~~e~~~~~  159 (182)
T d1znwa1          81 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQG  159 (182)
T ss_dssp             EEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGG
T ss_pred             ccccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHH-HHHHhhHh
Confidence            999999999999999999999999999999888889999999999999997 99998  578999999988 46888999


Q ss_pred             CCcEEEECCCHHHHHHHHHHHH
Q psy10228        188 FFTAVVQGDMPEDIYQKVKEVI  209 (225)
Q Consensus       188 ~fd~vI~Nddleea~~~lk~iI  209 (225)
                      .||++|+|||+++|+++|++||
T Consensus       160 ~fD~vI~Nddle~a~~~l~~iI  181 (182)
T d1znwa1         160 DFDKVVVNRRLESACAELVSLL  181 (182)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHh
Confidence            9999999999999999999987

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-42  Score=286.99  Aligned_cols=161  Identities=32%  Similarity=0.534  Sum_probs=149.0

Q ss_pred             ccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228         51 EPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT  112 (225)
Q Consensus        51 ~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT  112 (225)
                      +||||+|||||||+                  ||||||||+||++|+||||| |+++|+++++.|.|+||++++|++|||
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fv-s~~~f~~~~~~g~~~e~~~~~~~~Yg~   79 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYGT   79 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEe-ehhHHHHHhhhhhheeeeEEcCcceec
Confidence            58999999999998                  99999999999999999999 999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh---hC
Q psy10228        113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQE---FG  186 (225)
Q Consensus       113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~---~~  186 (225)
                      ++++|++++..|++|+++++++|+..|+.....|+.||+.||+.++|++ |++|+  +++++.+|+.++.. ++.   +.
T Consensus        80 ~~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~-~~~~~~~~  158 (190)
T d1lvga_          80 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-DMESSKEP  158 (190)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-HTTGGGST
T ss_pred             ccchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHH-HHHhhhhc
Confidence            9999999999999999999999999999888889999999999999987 88876  68999999998753 433   34


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        187 EFFTAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       187 ~~fd~vI~Nddleea~~~lk~iI~~~~  213 (225)
                      +.||++|+|+|+|+|+++|+.+|.++.
T Consensus       159 ~~fd~iI~N~dle~a~~~l~~iI~~~~  185 (190)
T d1lvga_         159 GLFDLVIINDDLDKAYATLKQALSEEI  185 (190)
T ss_dssp             TTCSEEEECSSHHHHHHHHHHHTHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHHHHH
Confidence            679999999999999999999988653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=4.3e-08  Score=75.30  Aligned_cols=155  Identities=11%  Similarity=0.033  Sum_probs=89.1

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC----CcceeecHHHHHHHHHcCC
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN----DNLYGTSVASVRDVAEKGK  125 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~----gn~YGTs~~sV~~v~~~gk  125 (225)
                      +++|+|+||+|||||+.. |.-  -+.-|..|+++ +.+.+...+..+.+.++....    ...|......+...+..+.
T Consensus         4 g~iI~l~G~~GsGKSTia-~~L--a~~lg~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIA-EAL--ANLPGVPKVHF-HSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             TEEEEEEECTTSCHHHHH-HHH--HTCSSSCEEEE-CTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHH-HHH--HHHhCCCEEEe-cHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            468999999999999321 111  12347788888 788888887766554332111    1123333445556667788


Q ss_pred             eEEEEccHH--HHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC-----HHHHHHHHHHHHHHHHhhCCCCcEEEECC-
Q psy10228        126 HCILDVSGN--AIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT-----EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-  196 (225)
Q Consensus       126 ~~ildv~~~--gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s-----eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-  196 (225)
                      .++++.-..  -+..+.........||+.++ .+++.+ +.+|..     .+.+......    -..+....+++|.++ 
T Consensus        80 ~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~~~~~----~~~~~~~~~~~idt~~  154 (176)
T d1zp6a1          80 FVILDGVVRPDWLPAFTALARPLHYIVLRTT-AAEAIERCLDRGGDSLSDPLVVADLHSQ----FADLGAFEHHVLPVSG  154 (176)
T ss_dssp             EEEECSCCCTTTTHHHHTTCSCEEEEEEECC-HHHHHHHHHTTCTTSCCCHHHHHHHHHH----TTCCGGGGGGEEECTT
T ss_pred             CeEecccccHHHHHHHHhcccccccccCCCC-HHHHHHHHHhCCCccccchhhHHHHHHH----HhhcccccCEEEECCC
Confidence            888874322  22223322222356777764 555554 878763     2222211111    112334557777755 


Q ss_pred             -CHHHHHHHHHHHHHhcc
Q psy10228        197 -MPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       197 -dleea~~~lk~iI~~~~  213 (225)
                       ++++++++|.+.|....
T Consensus       155 ~~~ee~~~~I~~~l~~~~  172 (176)
T d1zp6a1         155 KDTDQALQSAINALQSGR  172 (176)
T ss_dssp             CCTTTTTTTTHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence             68999999999887654

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.26  E-value=2.4e-06  Score=68.90  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             HHcCCeEEEEccH-HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCCH--HHHHHHHHHHHHHHHhhC-CCCcEEEEC
Q psy10228        121 AEKGKHCILDVSG-NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMTE--EQAKKMYDRSMKMEQEFG-EFFTAVVQG  195 (225)
Q Consensus       121 ~~~gk~~ildv~~-~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~se--eei~~rl~~a~k~E~~~~-~~fd~vI~N  195 (225)
                      ....+-|+||.+. +-=.+|.+..+.||++||+..|.++|.+ ++.|+..  ..+...+-.|.++.|-.. +.||.|+.-
T Consensus       104 ar~lqLvvLD~dtInhP~ql~ktsLaPIivyikiss~kVLqrLIKsrGksq~k~~nvq~vaa~kl~Qc~p~e~fD~iLde  183 (219)
T d1t0hb_         104 ARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPQESFDVILDE  183 (219)
T ss_dssp             HTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHHC------CHHHHHHHHHHHHTSCHHHHCSEEECC
T ss_pred             hhcccEEEeccCccCCHHHhcccCCcceEEEEEeCcHHHHHHHHHhcChhhhhcccHHHHHHHHHhccCchhccceeecc
Confidence            3458899999763 1111466678999999999999999999 6777742  122223344444433322 589999998


Q ss_pred             CCHHHHHHHHHHHHHhc
Q psy10228        196 DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       196 ddleea~~~lk~iI~~~  212 (225)
                      +.+++|+..|-+.++..
T Consensus       184 n~Le~Acehla~yLE~Y  200 (219)
T d1t0hb_         184 NQLEDACEHLADYLEAY  200 (219)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            88999999999998854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.26  E-value=1.8e-06  Score=65.12  Aligned_cols=155  Identities=10%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE--eCCcceeecHHHHHHHHHcCCeEE
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ--YNDNLYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~--~~gn~YGTs~~sV~~v~~~gk~~i  128 (225)
                      +.|+|+||+|||||+...+-.+.   -+.. +++ +.+.+...+.++....+..  .....+......+...+..+..++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~---~~~~-~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   77 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ---LDNS-AYI-EGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVV   77 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH---SSSE-EEE-EHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH---cCCC-EEE-ehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            47999999999999322221110   1111 233 4555554443332111000  001123344556677778899999


Q ss_pred             EEccH--HHHHHHHh---hcc--CCe-EEEEecCCHHHHHH-HhccCCHHH-HHHHHHHHHHHHHhhCCCCcEEEECC--
Q psy10228        129 LDVSG--NAIKRLQV---ASL--YPV-AIFIKPKSVESIME-MNKRMTEEQ-AKKMYDRSMKMEQEFGEFFTAVVQGD--  196 (225)
Q Consensus       129 ldv~~--~gvk~L~~---~~~--~Pi-~IFI~pps~~~L~~-L~~R~seee-i~~rl~~a~k~E~~~~~~fd~vI~Nd--  196 (225)
                      +|...  ...+.+..   ...  .+. +||+.+ +.+++.+ +..|..+.. ..+.+....+++ .....-+++|.|+  
T Consensus        78 id~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~id~~~~  155 (176)
T d2bdta1          78 LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDALRKKDEQMGERCLELVEEFE-SKGIDERYFYNTSHL  155 (176)
T ss_dssp             EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTTSCC----CGGGGHHHHHHH-HTTCCTTSEEECSSS
T ss_pred             cccccccHHHHHHHHHHHHhcCCCceEEEeccc-cHHHHHHHHHhCCCchhhhHHHHHHHHHHH-hCCCCCeEEEECCCC
Confidence            88532  22222111   112  233 455554 5666665 777764322 222233322221 2233445677765  


Q ss_pred             CHHHHHHHHHHHHHhc
Q psy10228        197 MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       197 dleea~~~lk~iI~~~  212 (225)
                      +.++..+.|++++...
T Consensus       156 ~~~~~~~~I~~i~~~~  171 (176)
T d2bdta1         156 QPTNLNDIVKNLKTNP  171 (176)
T ss_dssp             CGGGHHHHHHHHHHCG
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            5788888888888754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.03  E-value=5.5e-06  Score=64.99  Aligned_cols=87  Identities=16%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CeEEEEccHHH---HHHHHhhccCC-eEEEEecCCHHHHH-HHhccCCHHHHHHHHHHHHHHHHhhCCCC---cEEEE-C
Q psy10228        125 KHCILDVSGNA---IKRLQVASLYP-VAIFIKPKSVESIM-EMNKRMTEEQAKKMYDRSMKMEQEFGEFF---TAVVQ-G  195 (225)
Q Consensus       125 k~~ildv~~~g---vk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~seeei~~rl~~a~k~E~~~~~~f---d~vI~-N  195 (225)
                      ..+++|--+..   +..+......| .+||+.++. +.|. +++.|.+++.+++|++...+.-.....+|   -++|. |
T Consensus        83 ~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~-e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~  161 (189)
T d1zaka1          83 NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPD-ELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGD  161 (189)
T ss_dssp             TCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCH-HHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECS
T ss_pred             CcEEeeccchhhHHHhhhhhcccccchheeechhh-hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            45677754433   33444444566 678888764 5554 58888888888888877643111122222   24444 4


Q ss_pred             CCHHHHHHHHHHHHHhc
Q psy10228        196 DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       196 ddleea~~~lk~iI~~~  212 (225)
                      .++++.++++.++|...
T Consensus       162 ~~idev~~~I~~~l~~i  178 (189)
T d1zaka1         162 ATVDAVFAKIDELLGSI  178 (189)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            58999999999988653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.03  E-value=4.4e-07  Score=71.59  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=39.5

Q ss_pred             eEEEEecCCHHHHH-HHhccC--------CHHHHHHHHHHHHHHHH----hhCCCCcE-EEE-CCCHHHHHHHHHHHHHh
Q psy10228        147 VAIFIKPKSVESIM-EMNKRM--------TEEQAKKMYDRSMKMEQ----EFGEFFTA-VVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       147 i~IFI~pps~~~L~-~L~~R~--------seeei~~rl~~a~k~E~----~~~~~fd~-vI~-Nddleea~~~lk~iI~~  211 (225)
                      ++||+.++. +.+. ++.+|.        +.+.+++|++...+...    .|...-++ +|. |.+.++.+++|.++|..
T Consensus       113 ~vi~l~~~~-~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         113 FVLFFDCPE-EVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             EEEEEECCH-HHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             EEEEeecch-HHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            678888865 4444 454432        35678888887643111    12222234 444 34899999999999975


Q ss_pred             c
Q psy10228        212 Q  212 (225)
Q Consensus       212 ~  212 (225)
                      .
T Consensus       192 ~  192 (194)
T d1qf9a_         192 M  192 (194)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.99  E-value=9.4e-08  Score=75.57  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCHHHHHHHhcc-C-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccC
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR-M-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSG  214 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R-~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~  214 (225)
                      +-.+|||.+|....++++.+| + +++++..+++.-...+ .....+|+||.|+ +++++..+|..++.+..|
T Consensus       120 ~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~~~~~~q~~~~-~~~~~aD~vI~N~~s~~~l~~~v~~il~~l~~  191 (191)
T d1uf9a_         120 LHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPEE-EKRKRATWVLENTGSLEDLERALKAVLAELTG  191 (191)
T ss_dssp             SSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTSCCHH-HHHHHCSEEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred             ceeEEEEecchhhHHHHHHhcccchHHHHHHHHHhCCCHH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHccC
Confidence            347899998765666666655 3 6777776655421111 1134679999887 699999999999987754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.97  E-value=2.5e-05  Score=59.14  Aligned_cols=151  Identities=13%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC--CcEEEEEEeC--CcceeecHHHHHHHHHcCCeE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN--HLFIEAGQYN--DNLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~--~~FiE~~~~~--gn~YGTs~~sV~~v~~~gk~~  127 (225)
                      -|+|+||+|||||+....-..  +.+|  |+|+ +-+.+......  ....+.+.+.  ........+.+..++..+..+
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~--~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   81 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAA--ELDG--FQHL-EVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH   81 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HSTT--EEEE-EHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHH--HhCC--CcEE-eHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcccc
Confidence            489999999999922211100  0122  4555 45554443211  1111111111  111222445556677778888


Q ss_pred             EEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC-HHHHHH-----HHHHHHHHHHhhCCCCcEEE--ECCCH
Q psy10228        128 ILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT-EEQAKK-----MYDRSMKMEQEFGEFFTAVV--QGDMP  198 (225)
Q Consensus       128 ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s-eeei~~-----rl~~a~k~E~~~~~~fd~vI--~Nddl  198 (225)
                      +++.....+  ++ ......+|||.++ .+.+.+ +.+|.. ...+..     .+....+ |..-....+++|  .|+++
T Consensus        82 ~~~~~~~~~--~~-~~~~~~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~i~~~~~t~  156 (174)
T d1y63a_          82 VVDYHSSEL--FP-ERWFHMVVVLHTS-TEVLFERLTKRQYSEAKRAENMEAEIQCICEE-EARDAYEDDIVLVRENDTL  156 (174)
T ss_dssp             EEECSCCTT--SC-GGGCSEEEEEECC-HHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHH-HHHHHSCGGGEEEEECSSH
T ss_pred             cccHHHHHH--HH-HhcCceEEEEECC-HHHHHHHHHhCCCcccccccchhhhhhhhhHH-HHHHhhcCCEEEECCCCCH
Confidence            887654332  22 1234477899885 566665 877763 211111     1111110 111011234444  36689


Q ss_pred             HHHHHHHHHHHHhc
Q psy10228        199 EDIYQKVKEVIQEQ  212 (225)
Q Consensus       199 eea~~~lk~iI~~~  212 (225)
                      +++.+.|.+|+...
T Consensus       157 ee~~~~V~~I~~~i  170 (174)
T d1y63a_         157 EQMAATVEEIRERV  170 (174)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988888877643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.4e-05  Score=60.59  Aligned_cols=92  Identities=14%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             HHHHHHHcCCeEEEEccH--HHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccCC----HHHHHHHHHHHHHHHHhhCC
Q psy10228        116 SVRDVAEKGKHCILDVSG--NAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRMT----EEQAKKMYDRSMKMEQEFGE  187 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~--~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~s----eeei~~rl~~a~k~E~~~~~  187 (225)
                      .+...+..+...+++...  ...+.+......| ..||+.+| .+.+.+ +..|..    .+-++.+++.   +|.....
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~---~e~~~~~  145 (171)
T d1knqa_          70 AAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQFET---LQEPGAD  145 (171)
T ss_dssp             HHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECC-HHHHHHHHHTSTTCCCCHHHHHHHHHH---CCCCCTT
T ss_pred             HHHHHHhccCceEeeccchHHHHHHHHHHhCCCceEEeecCC-HHHHHHHHHhCcCCCccHHHHHhhHHH---hhCCCcc
Confidence            344455667776666442  1222121122233 66788775 566654 877753    3334333322   1222234


Q ss_pred             CCcEEEE-CC-CHHHHHHHHHHHHHh
Q psy10228        188 FFTAVVQ-GD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       188 ~fd~vI~-Nd-dleea~~~lk~iI~~  211 (225)
                      ..+++++ ++ ++|++++++.++|++
T Consensus       146 e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         146 ETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             CTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence            4565554 33 699999999988863

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.86  E-value=5e-06  Score=63.36  Aligned_cols=65  Identities=11%  Similarity=0.094  Sum_probs=34.1

Q ss_pred             CeEEEEecCCHHHHHHHhccC-------CHHHHHHHHHHHHHHHH---hhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIMEMNKRM-------TEEQAKKMYDRSMKMEQ---EFGEFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~L~~R~-------seeei~~rl~~a~k~E~---~~~~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ..+||+.++.-..++++.+|.       +.+.++...........   .+.....++|+|.  ++|+++++|.++|.
T Consensus       114 ~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         114 DLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             SEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             cceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            367888865434444554332       23333322111111111   2234455667664  79999999998873

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=0.00011  Score=56.66  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             eEEEEccHHH---HHHHHhhccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHH----HHhhC-----CCCc-E
Q psy10228        126 HCILDVSGNA---IKRLQVASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKM----EQEFG-----EFFT-A  191 (225)
Q Consensus       126 ~~ildv~~~g---vk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~----E~~~~-----~~fd-~  191 (225)
                      ..++|--|..   +..+......| ++||+.+|....++++..|.+++.+++|++...+.    ...|.     .... +
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~  159 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYA  159 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEE
T ss_pred             ceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEE
Confidence            4566654422   33344444555 78899987644445588888888899998765321    11111     1222 3


Q ss_pred             EEE-CCCHHHHHHHHHHHH
Q psy10228        192 VVQ-GDMPEDIYQKVKEVI  209 (225)
Q Consensus       192 vI~-Nddleea~~~lk~iI  209 (225)
                      +|. +.++++.+++|..+|
T Consensus       160 ~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         160 KVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             EEETTSCHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHh
Confidence            444 347999999999887

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=1.4e-06  Score=69.72  Aligned_cols=100  Identities=10%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             ecHHHHHHHHHcCCeEEEEccH---------------HHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC----H
Q psy10228        112 TSVASVRDVAEKGKHCILDVSG---------------NAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT----E  168 (225)
Q Consensus       112 Ts~~sV~~v~~~gk~~ildv~~---------------~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s----e  168 (225)
                      .....|+..+.+|.+||+|=..               .-+..+...   ...| .+||+.+|--..++++.+|..    +
T Consensus        80 ~~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~  159 (210)
T d4tmka_          80 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE  159 (210)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhh
Confidence            3344467778899999988322               111222211   1245 789999875444555766652    1


Q ss_pred             ---HHHHHHHHHHHHHHHhhCCCCcEEEE-CCCHHHHHHHHHHHHHhc
Q psy10228        169 ---EQAKKMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       169 ---eei~~rl~~a~k~E~~~~~~fd~vI~-Nddleea~~~lk~iI~~~  212 (225)
                         .+..+++..+.. +....+.--.+|. |.++|+..++|..+|.+.
T Consensus       160 ~~~~~~~~~v~~~y~-~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~  206 (210)
T d4tmka_         160 QESFDFFNRTRARYL-ELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW  206 (210)
T ss_dssp             TSCHHHHHHHHHHHH-HHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHH-HHHhcCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence               122333333221 2211122224555 347999989988888753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.78  E-value=3.5e-06  Score=63.84  Aligned_cols=147  Identities=10%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHc---CCeEE
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEK---GKHCI  128 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~---gk~~i  128 (225)
                      -|+|+||+|||||+..-+-.   |.-  .|.|+ +-.+....   ..+.+........+......+...+..   ...+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La---~~l--~~~~i-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELA---SKS--GLKYI-NVGDLARE---EQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVI   76 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHH---HHH--CCEEE-EHHHHHHH---TTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHH---HHH--CCcEE-echHHHHH---hccccchhHHhhhhhHHHHHHHHHhhhhhhcCCcc
Confidence            38899999999993222211   111  35566 33333222   222221112223334443333333322   12233


Q ss_pred             EEccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhccCC-HHHHHH-----HHHHHH-HHHHhhCCCCcEEEECCCHHH
Q psy10228        129 LDVSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRMT-EEQAKK-----MYDRSM-KMEQEFGEFFTAVVQGDMPED  200 (225)
Q Consensus       129 ldv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~s-eeei~~-----rl~~a~-k~E~~~~~~fd~vI~Nddlee  200 (225)
                      ++.....  .+. ......+||+.++ .+.+. ++.+|.. ...+..     .+.... +....|...+++++.|+++++
T Consensus        77 ~~~~~~~--~~~-~~~~~~~i~l~~~-~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~i~~~~~~~~~  152 (173)
T d1rkba_          77 VDYHGCD--FFP-ERWFHIVFVLRTD-TNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEE  152 (173)
T ss_dssp             EECSCCT--TSC-GGGCSEEEEEECC-HHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHH
T ss_pred             cchhHHH--HHH-HhcCCCcceecCC-HHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhhccEEEECCCCHHH
Confidence            3322211  111 1233467888875 45554 4777763 221111     111111 111234456677888888888


Q ss_pred             HHHHHHHHHHh
Q psy10228        201 IYQKVKEVIQE  211 (225)
Q Consensus       201 a~~~lk~iI~~  211 (225)
                      +.+.+.+++..
T Consensus       153 ~~~~i~~Ii~~  163 (173)
T d1rkba_         153 LENNVDQILKW  163 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.69  E-value=3.5e-05  Score=58.03  Aligned_cols=93  Identities=15%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             ceeecHHHHHHHHHcCCeEEEEcc---HHHHHHHHh--hccCC-eEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHH
Q psy10228        109 LYGTSVASVRDVAEKGKHCILDVS---GNAIKRLQV--ASLYP-VAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSM  179 (225)
Q Consensus       109 ~YGTs~~sV~~v~~~gk~~ildv~---~~gvk~L~~--~~~~P-i~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~  179 (225)
                      .|......+....+.+..++++..   +........  ....+ ..|||.++ .+++++ +..|..  ++......+   
T Consensus        71 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~---  146 (178)
T d1qhxa_          71 LEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAAKQAY---  146 (178)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHHHHTT---
T ss_pred             HHHHHHHHHHHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCC-HHHHHHHHHhcCCcchhhhhhhhh---
Confidence            444445556666777888887643   222211111  11233 56888876 455554 666653  222211111   


Q ss_pred             HHHHhhCCCCcEEEECC--CHHHHHHHHHH
Q psy10228        180 KMEQEFGEFFTAVVQGD--MPEDIYQKVKE  207 (225)
Q Consensus       180 k~E~~~~~~fd~vI~Nd--dleea~~~lk~  207 (225)
                        ..+....+|.+|.+.  +++++..+|.+
T Consensus       147 --~~~~~~~~dl~IDts~~s~ee~a~~I~~  174 (178)
T d1qhxa_         147 --VVHEGVEYDVEVDTTHKESIECAWAIAA  174 (178)
T ss_dssp             --GGGTTCCCSEEEETTSSCHHHHHHHHHT
T ss_pred             --hhhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence              112235689999875  68999888864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=3.9e-05  Score=59.97  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             CCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeE
Q psy10228         48 SDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~  127 (225)
                      ....+||++|++|||||+...+--     ...+|.++ +.+++...                 .-....++..+++|.++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~-----~~~~~~~i-~~D~~~~~-----------------~~~~~~~~~~l~~g~~v   68 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL-----VSAGYVHV-NRDTLGSW-----------------QRCVSSCQAALRQGKRV   68 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT-----GGGTCEEE-EHHHHCSH-----------------HHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-----HhcCCEEE-chHHHHHH-----------------HHHHHHHHHHHHCCCCc
Confidence            345699999999999994433221     11347788 77776421                 12356778899999999


Q ss_pred             EEEccH---HHHHHH----HhhccCCeEEEEecCCHHHHHH-Hhcc
Q psy10228        128 ILDVSG---NAIKRL----QVASLYPVAIFIKPKSVESIME-MNKR  165 (225)
Q Consensus       128 ildv~~---~gvk~L----~~~~~~Pi~IFI~pps~~~L~~-L~~R  165 (225)
                      |+|-..   .....+    +..+....+|++.+ +.+.+.+ ...|
T Consensus        69 IiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~-~~e~~~~Rn~~R  113 (172)
T d1yj5a2          69 VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQARHNNRFR  113 (172)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHHHHHHHH
T ss_pred             eeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCC-CHHHHHHHHHHh
Confidence            999532   221111    11232335677776 4666654 4444

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=0.00018  Score=56.09  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             CCeEEEEccHHHHH---HHHhhccCC-eEEEEecCCHHHHHHHhc------cC--CHHHHHHHHHHHHHH----HHhhCC
Q psy10228        124 GKHCILDVSGNAIK---RLQVASLYP-VAIFIKPKSVESIMEMNK------RM--TEEQAKKMYDRSMKM----EQEFGE  187 (225)
Q Consensus       124 gk~~ildv~~~gvk---~L~~~~~~P-i~IFI~pps~~~L~~L~~------R~--seeei~~rl~~a~k~----E~~~~~  187 (225)
                      ....++|.-+..+.   .+......| .+|++.++.-..++++..      |.  +++.+++|++...+.    ..-|..
T Consensus        89 ~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~  168 (196)
T d1ukza_          89 KHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFET  168 (196)
T ss_dssp             CCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred             CCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34677776554332   333333344 677777764333333332      32  467888888765421    111222


Q ss_pred             CCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228        188 FFT-AVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       188 ~fd-~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      .-. +.|..+ +.++.+++|..+|.+
T Consensus       169 ~~~~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         169 KSKVVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            222 344433 799999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.60  E-value=1.9e-05  Score=58.82  Aligned_cols=123  Identities=9%  Similarity=0.053  Sum_probs=63.5

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC----cceeecHHHHHHHHHc--
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND----NLYGTSVASVRDVAEK--  123 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g----n~YGTs~~sV~~v~~~--  123 (225)
                      +++|+|+||||||||+...+-.+    +...+.++ +.+.+......+.......+..    ..-......+..+++.  
T Consensus         2 kklIii~G~pGsGKTTla~~L~~----~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIA----KNPGFYNI-NRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGD   76 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH----HSTTEEEE-CHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH----hCCCCEEe-chHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence            35789999999999944332111    12346677 6766665543332211111111    1112334445555554  


Q ss_pred             -CCeEEEEc---cHHHHHHHH----hhccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHH
Q psy10228        124 -GKHCILDV---SGNAIKRLQ----VASLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRS  178 (225)
Q Consensus       124 -gk~~ildv---~~~gvk~L~----~~~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a  178 (225)
                       +..+|+|-   .......+.    ..+....+||+.+| .+++.+ +.+|.    +++.+++++++.
T Consensus        77 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~  143 (152)
T d1ly1a_          77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSM  143 (152)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHHHHHHHH
T ss_pred             cCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCC-HHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence             34577763   222222222    12222366888765 666664 66665    456676666654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.7e-05  Score=64.03  Aligned_cols=94  Identities=11%  Similarity=0.152  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCeEEEEccH---HH------------HHHHHhhccCC-eEEEEecCCHHHHH-HHhccCC---HHHHHHH
Q psy10228        115 ASVRDVAEKGKHCILDVSG---NA------------IKRLQVASLYP-VAIFIKPKSVESIM-EMNKRMT---EEQAKKM  174 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~~---~g------------vk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~s---eeei~~r  174 (225)
                      ..|...+.+|+++|+|-..   -+            +..+...-..| ++||+.+| .+.+. ++..+..   ..+..++
T Consensus        78 ~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~~~~~E~~~~~~r  156 (209)
T d1nn5a_          78 PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQER  156 (209)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCSHHHHHH
T ss_pred             HhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeeccc-HHHHhhhhcccccccccHHHHHH
Confidence            5678888999999988422   11            11111111235 78999886 34443 3433321   1223333


Q ss_pred             HHHHHHHHHhhCCC--CcE-EEEC-CCHHHHHHHHHHHHHhc
Q psy10228        175 YDRSMKMEQEFGEF--FTA-VVQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       175 l~~a~k~E~~~~~~--fd~-vI~N-ddleea~~~lk~iI~~~  212 (225)
                      +..+.   .++...  ..+ +|.+ .+.++..++|..++...
T Consensus       157 ~~~~Y---~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~  195 (209)
T d1nn5a_         157 ALRCF---HQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA  195 (209)
T ss_dssp             HHHHH---HHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            33322   222222  234 4443 47999988888887754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.47  E-value=0.00047  Score=53.37  Aligned_cols=67  Identities=7%  Similarity=0.164  Sum_probs=42.1

Q ss_pred             eEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHh----hCCC-CcEEEE-CCCHHHHHHHHHHHHHhcc
Q psy10228        147 VAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQE----FGEF-FTAVVQ-GDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~----~~~~-fd~vI~-Nddleea~~~lk~iI~~~~  213 (225)
                      .+|++.+|....++++..|.     +++.+++|++...+....    |... ..++|. +.++++.+++|..+|.+..
T Consensus       112 ~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~~  189 (190)
T d1ak2a1         112 SVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKAT  189 (190)
T ss_dssp             EEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHHT
T ss_pred             ccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            67888887544445566554     467888888776432111    2211 224455 3489999999999997653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=1e-05  Score=64.73  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             cCCeEEEEecCCHHHHHHHhcc-C-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228        144 LYPVAIFIKPKSVESIMEMNKR-M-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       144 ~~Pi~IFI~pps~~~L~~L~~R-~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~  212 (225)
                      .+-.+|||.+|....++++..| + +.+++.+|++.-...+ +.....|+||.|+ +++++..+|.+.|...
T Consensus       123 ~~d~ii~v~~~~~~r~~R~~~R~~~s~e~~~~~~~~Q~~~~-~k~~~aD~vI~N~~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         123 LCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQ-ERLKWADDVINNDAELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             GCSEEEEEECCHHHHHHHHC-----CHHHHHHHHHHSCCHH-HHHHHCSEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hhhheeeecchHHHHHHHHHhcCCchHHHHHHHHHhCCCHH-HHHHhCCEEEECCCChHHHHHHHHHHHHHH
Confidence            3457899998876667776555 3 7888888876421111 1235689999998 7888888777666543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=4.5e-05  Score=58.50  Aligned_cols=90  Identities=16%  Similarity=0.299  Sum_probs=47.4

Q ss_pred             HHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--------CHHHHHHHHHHHHHHHHhhC
Q psy10228        116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--------TEEQAKKMYDRSMKMEQEFG  186 (225)
Q Consensus       116 sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--------seeei~~rl~~a~k~E~~~~  186 (225)
                      .|.+.+.....+++...+..+ ........-++|||.+| .+++.+ +..|.        ++..+++.++.-   +.-|.
T Consensus        61 ~v~~~l~~~~~~v~~~~g~~~-~~~~l~~~~~vI~L~~s-~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r---~~~Y~  135 (161)
T d1viaa_          61 KMADFFSSCEKACIATGGGFV-NVSNLEKAGFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNER---LSKYE  135 (161)
T ss_dssp             HHHHHHTTCCSEEEECCTTGG-GSTTGGGGCEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH---HHHHH
T ss_pred             hhchhhhhccccccccccchh-hHHHHHhCCeEEEeccc-hHHHHHHHccccccccccccCchHHHHHHHHH---HHHHH
Confidence            344444455556666544322 11111112378999986 456544 43321        233344333221   22233


Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      ...|++|..+  ++++++++|.++|+
T Consensus       136 ~~ad~~Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         136 QKANFILNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             HHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             hhCCEEEECCCCCHHHHHHHHHHHhC
Confidence            4568888744  79999999988873

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.5e-05  Score=61.18  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             ccCCeEEEEecCCHHHHHH-Hh----ccC-CHHHH-HHHHHHHHHHHHhh----CCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228        143 SLYPVAIFIKPKSVESIME-MN----KRM-TEEQA-KKMYDRSMKMEQEF----GEFFTAVVQGD-MPEDIYQKVKEVIQ  210 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~-L~----~R~-seeei-~~rl~~a~k~E~~~----~~~fd~vI~Nd-dleea~~~lk~iI~  210 (225)
                      .+.-..|||.++.-..+.+ +.    .|+ +.+++ ...+.+....+..+    ....|.||.|+ |...+++.|.+-|.
T Consensus       129 ~~~D~~i~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~~d~~~~i~~i~~~I~  208 (213)
T d1uj2a_         129 DLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQ  208 (213)
T ss_dssp             HHCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHH
T ss_pred             hhhheeeeecCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCCCccHHHHHHHHHHHH
Confidence            4456889999875444444 22    234 44544 33333332222333    35689999876 43445555554444

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.0007  Score=54.18  Aligned_cols=98  Identities=12%  Similarity=0.169  Sum_probs=44.6

Q ss_pred             HHHHHHHHcCCeEEEEccH------HH--------HHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC----HHHHH
Q psy10228        115 ASVRDVAEKGKHCILDVSG------NA--------IKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT----EEQAK  172 (225)
Q Consensus       115 ~sV~~v~~~gk~~ildv~~------~g--------vk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s----eeei~  172 (225)
                      ..|...+..|+++|+|=..      ++        +..+...   -..| ++||+..|....+.+.+.+..    ..+..
T Consensus        76 ~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~~e~~~~~  155 (214)
T d1tmka_          76 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQ  155 (214)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSSTTCCHHHH
T ss_pred             HHHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhhhhhHHHH
Confidence            4577788899999998321      11        1111111   2356 889998655454444444432    12222


Q ss_pred             HHHHHHH----HHHHhhCCCCcEEEEC--CCHHHHHHHHHHHHHhc
Q psy10228        173 KMYDRSM----KMEQEFGEFFTAVVQG--DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       173 ~rl~~a~----k~E~~~~~~fd~vI~N--ddleea~~~lk~iI~~~  212 (225)
                      +++..+.    +.+....+.--.+|.+  .+.++..+.|..+|++.
T Consensus       156 ~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~  201 (214)
T d1tmka_         156 EKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV  201 (214)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            3333221    1111111222234442  36888888888777643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=0.00027  Score=53.96  Aligned_cols=66  Identities=11%  Similarity=0.116  Sum_probs=42.6

Q ss_pred             eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHH----hhCCCCcE-EEE-CCCHHHHHHHHHHHHHhc
Q psy10228        147 VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQ----EFGEFFTA-VVQ-GDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       147 i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~----~~~~~fd~-vI~-Nddleea~~~lk~iI~~~  212 (225)
                      .++++.++....++++..+.+++.+++|++...+.-.    .|.....+ +|. +.+.++.+++|..+|...
T Consensus       109 ~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l  180 (182)
T d1zina1         109 YVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGL  180 (182)
T ss_dssp             EEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             eeeccccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            5667777654444458888888999999887643111    12222233 344 237999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.30  E-value=3.3e-05  Score=58.91  Aligned_cols=66  Identities=8%  Similarity=0.041  Sum_probs=35.0

Q ss_pred             CC-eEEEEecCCHHHHHHHhccC-------CHHHHHHHHHHHH---HHHH-hhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        145 YP-VAIFIKPKSVESIMEMNKRM-------TEEQAKKMYDRSM---KMEQ-EFGEFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       145 ~P-i~IFI~pps~~~L~~L~~R~-------seeei~~rl~~a~---k~E~-~~~~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      .| .+||+.++....+.++.+|.       +.+.+.+++....   .... .+.+....+|.|.  +++++.++|...|+
T Consensus       115 ~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         115 NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             ccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            44 67888875433334454332       2344443333221   1111 1124455666664  79999999988763

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.14  E-value=0.00038  Score=53.66  Aligned_cols=64  Identities=8%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             eEEEEecCCHHHHH-HHhccCCHHHHHHHHHHHHHH----HHhhCCCCcE-EEE-CCCHHHHHHHHHHHHHh
Q psy10228        147 VAIFIKPKSVESIM-EMNKRMTEEQAKKMYDRSMKM----EQEFGEFFTA-VVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       147 i~IFI~pps~~~L~-~L~~R~seeei~~rl~~a~k~----E~~~~~~fd~-vI~-Nddleea~~~lk~iI~~  211 (225)
                      ..+++.++ .+.+. +++.+.+++.+++|++...+.    ...|.....+ +|. |.++++.+++|..+|..
T Consensus       109 ~~~~l~~~-~e~~~~R~~~~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~  179 (182)
T d1s3ga1         109 HVLNIQVE-KEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG  179 (182)
T ss_dssp             EEEEEECC-HHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTC
T ss_pred             eccchhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            44555554 45444 477777888899998865421    1123333333 344 33799999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.0016  Score=49.72  Aligned_cols=65  Identities=8%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             cCC-eEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHHHH----HHhhCCCCcEEEE-CCCHHHHHHHHHHHHH
Q psy10228        144 LYP-VAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSMKM----EQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQ  210 (225)
Q Consensus       144 ~~P-i~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~k~----E~~~~~~fd~vI~-Nddleea~~~lk~iI~  210 (225)
                      ..| ++|++..+ .+.+.+ +..|.    +++.+++|++...+.    ...|... ..+|. |.+.++.++++..+|.
T Consensus       105 ~~~~~vi~l~~~-~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~~-~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         105 TDIDAVLEFRVS-EEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQ-LKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             CCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTT-EEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCccEEEeccCC-HHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-eEEEECCCCHHHHHHHHHHHhC
Confidence            455 67788876 455554 65443    367788888876431    1123332 34454 4489999999988875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0043  Score=47.60  Aligned_cols=88  Identities=9%  Similarity=0.106  Sum_probs=46.4

Q ss_pred             CCeEEEEccHHHHHH---HHhh---ccCC-eEEEEecCCHHHHHHHhcc------C--CHHHHHHHHHHHHHH----HHh
Q psy10228        124 GKHCILDVSGNAIKR---LQVA---SLYP-VAIFIKPKSVESIMEMNKR------M--TEEQAKKMYDRSMKM----EQE  184 (225)
Q Consensus       124 gk~~ildv~~~gvk~---L~~~---~~~P-i~IFI~pps~~~L~~L~~R------~--seeei~~rl~~a~k~----E~~  184 (225)
                      ...++++--|.....   +...   ...| .+||+.++....++++.+|      .  +++.+++|+....+.    ..-
T Consensus        84 ~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~~~  163 (194)
T d1teva_          84 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDL  163 (194)
T ss_dssp             CCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            345677765533322   2221   1122 3566666543333335443      2  356777777765321    111


Q ss_pred             hCCCCcEEEEC--CCHHHHHHHHHHHHHh
Q psy10228        185 FGEFFTAVVQG--DMPEDIYQKVKEVIQE  211 (225)
Q Consensus       185 ~~~~fd~vI~N--ddleea~~~lk~iI~~  211 (225)
                      |.....++++|  .++++.+++|..+|.+
T Consensus       164 y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         164 YEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            33333444443  4799999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00028  Score=53.78  Aligned_cols=85  Identities=11%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             HHHHHHcCCeEEEEccH----HHHHHHHhhccCCeEEEEecCCHHHHHHHhc---c--C---C-HHHHHHHHHHHHHHHH
Q psy10228        117 VRDVAEKGKHCILDVSG----NAIKRLQVASLYPVAIFIKPKSVESIMEMNK---R--M---T-EEQAKKMYDRSMKMEQ  183 (225)
Q Consensus       117 V~~v~~~gk~~ildv~~----~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~---R--~---s-eeei~~rl~~a~k~E~  183 (225)
                      +...+.+...++....+    ...+.+.   ..-..||+.++....++++..   |  +   + .+.+++.++.-   ..
T Consensus        64 ~~~~~~~~~~vi~~gg~~~~~~~~~~~l---~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR---~~  137 (165)
T d2iyva1          64 VRAALADHDGVLSLGGGAVTSPGVRAAL---AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKR---AP  137 (165)
T ss_dssp             HHHHHHHCCSEEECCTTGGGSHHHHHHH---TTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHH---HH
T ss_pred             hhhccccccccccccccccccccccccc---cccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHH---HH
Confidence            45556666655543222    1122221   223568888754343444533   2  1   1 23454444321   12


Q ss_pred             hhCCCCcEEEECC--CHHHHHHHHHH
Q psy10228        184 EFGEFFTAVVQGD--MPEDIYQKVKE  207 (225)
Q Consensus       184 ~~~~~fd~vI~Nd--dleea~~~lk~  207 (225)
                      -|....|++|..+  ++++++++|.+
T Consensus       138 ~Y~~~ad~~Idt~~~s~~ei~~~Ii~  163 (165)
T d2iyva1         138 LYRRVATMRVDTNRRNPGAVVRHILS  163 (165)
T ss_dssp             HHHHHCSEEEECSSSCHHHHHHHHHT
T ss_pred             HHHhhCCEEEECCCCCHHHHHHHHHh
Confidence            2444568888744  79998888754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00042  Score=53.02  Aligned_cols=26  Identities=35%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ..+|++|.++  +++++.++|...|++.
T Consensus       163 ~~~dl~IdT~~~s~ee~~~~Il~~l~~~  190 (195)
T d1x6va3         163 EAPELVLKTDSCDVNDCVQQVVELLQER  190 (195)
T ss_dssp             SSCSEEECTTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHC
Confidence            4678888876  6999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.97  E-value=0.0048  Score=48.02  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CeEEEEccHHHH---HHHHhhccCC-eEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHH----hhCCC-CcEEEE
Q psy10228        125 KHCILDVSGNAI---KRLQVASLYP-VAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQ----EFGEF-FTAVVQ  194 (225)
Q Consensus       125 k~~ildv~~~gv---k~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~----~~~~~-fd~vI~  194 (225)
                      ...|+|--|...   ..|.. .+.| .+|++.++. +.|.+ +..|  ++.+.+|++...+.-.    .|... .-.+|.
T Consensus        84 ~~~ildGfPr~~~q~~~l~~-~~~~~~vi~L~v~~-~~l~~R~~~r--~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~id  159 (189)
T d2ak3a1          84 YNWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPF-EVIKQRLTDR--PETVVKRLKAYEAQTEPVLEYYRKKGVLETFS  159 (189)
T ss_dssp             SCEEEESCCCSHHHHHHHHT-TCCCCEEEEEECCH-HHHHHHHTGS--HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCcccccccchhhHHHHhhh-cCcceEEEEEeccc-hhhhhhcccc--hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence            346777544332   33432 2333 678888864 44433 4333  5677777776532111    12221 223455


Q ss_pred             CCCHHHHHHHHHHHHHhcc-CCceeeeC
Q psy10228        195 GDMPEDIYQKVKEVIQEQS-GPSIWVPS  221 (225)
Q Consensus       195 Nddleea~~~lk~iI~~~~-~~~~WVp~  221 (225)
                      +++.++.++++..+|...- ....+.+.
T Consensus       160 g~~~~eV~~~I~~~i~~~l~~~~~~~~~  187 (189)
T d2ak3a1         160 GTETNKIWPHVYAFLQTKLPQRSQETSV  187 (189)
T ss_dssp             CSSHHHHHHHHHHHHHTTSCBCSCCCCS
T ss_pred             CCChHHHHHHHHHHHHHHhhccccCCCC
Confidence            5689999999999998643 34555543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.95  E-value=0.00098  Score=51.79  Aligned_cols=89  Identities=15%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             CCeEEEEccHHHHH---HHHhhccCC-eEEEEecCCHHHHHH------HhccC--CHHHHHHHHHHHHHH----HHhhCC
Q psy10228        124 GKHCILDVSGNAIK---RLQVASLYP-VAIFIKPKSVESIME------MNKRM--TEEQAKKMYDRSMKM----EQEFGE  187 (225)
Q Consensus       124 gk~~ildv~~~gvk---~L~~~~~~P-i~IFI~pps~~~L~~------L~~R~--seeei~~rl~~a~k~----E~~~~~  187 (225)
                      .+..++|--|..+.   .+...-..| ..+|+..+....+++      +..|.  +++.+++|++...+.    -..|..
T Consensus        87 ~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~  166 (194)
T d3adka_          87 SKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEK  166 (194)
T ss_dssp             CSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHTT
T ss_pred             cccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567776543332   333222223 566666554333332      33455  356788888876431    112443


Q ss_pred             CCcEE-EEC-CCHHHHHHHHHHHHHhc
Q psy10228        188 FFTAV-VQG-DMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       188 ~fd~v-I~N-ddleea~~~lk~iI~~~  212 (225)
                      ...++ |.. .++++.+++|...|+..
T Consensus       167 ~~~~~~Id~~~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         167 RGIVRKVNAEGSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             TTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            33333 432 38999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.92  E-value=0.00033  Score=53.61  Aligned_cols=63  Identities=11%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             CeEEEEecCCHHHHHH-Hhcc------C--CHHHHHHHHHHHHH-HHHhhCCCCcEEEECC-CHHHHHHHHHHHH
Q psy10228        146 PVAIFIKPKSVESIME-MNKR------M--TEEQAKKMYDRSMK-MEQEFGEFFTAVVQGD-MPEDIYQKVKEVI  209 (225)
Q Consensus       146 Pi~IFI~pps~~~L~~-L~~R------~--seeei~~rl~~a~k-~E~~~~~~fd~vI~Nd-dleea~~~lk~iI  209 (225)
                      +.+||+.+| .+.+.+ +..+      .  ......+.+....+ -..-|....|++|.++ ++++.+.+|.+.|
T Consensus        95 ~~~v~L~~~-~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_          95 GTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             SEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHT
T ss_pred             ceeEEEecC-chhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHHHc
Confidence            578999885 455554 5422      1  22222222222111 0112334457778755 6888887776554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.81  E-value=7.6e-05  Score=57.29  Aligned_cols=51  Identities=6%  Similarity=0.008  Sum_probs=24.8

Q ss_pred             ccCCeEEEEecCCHHHHHH-HhccC-CHHHHHHHHHHHHHHHHhh---CCCCcEEE
Q psy10228        143 SLYPVAIFIKPKSVESIME-MNKRM-TEEQAKKMYDRSMKMEQEF---GEFFTAVV  193 (225)
Q Consensus       143 ~~~Pi~IFI~pps~~~L~~-L~~R~-seeei~~rl~~a~k~E~~~---~~~fd~vI  193 (225)
                      ......|||.+|.-..+++ +.+++ +.+++..++..+......+   .+.+|.||
T Consensus       142 ~~~d~~i~l~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~y~~~~~p~~~ADiIi  197 (198)
T d1rz3a_         142 PFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRADVVF  197 (198)
T ss_dssp             GGCSEEEEECCC--------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEE
T ss_pred             ccceeeeeccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcChHHhCCEEe
Confidence            4456899999987666655 33344 5677777766554322222   23678765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0023  Score=49.09  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=35.1

Q ss_pred             ccCC-eEEEEecCCHHHHH-HHhccCCHHHHHHHHHHHHHH----HHhhCCCCc-EEEE-CCCHHHHHHHHHHHHHh
Q psy10228        143 SLYP-VAIFIKPKSVESIM-EMNKRMTEEQAKKMYDRSMKM----EQEFGEFFT-AVVQ-GDMPEDIYQKVKEVIQE  211 (225)
Q Consensus       143 ~~~P-i~IFI~pps~~~L~-~L~~R~seeei~~rl~~a~k~----E~~~~~~fd-~vI~-Nddleea~~~lk~iI~~  211 (225)
                      ...| .+||+.++. +.+. ++..   .+.+.+|++...+.    ...|....- ++|. |.++++.+++|..+|..
T Consensus       107 ~~~~~~vi~L~~~~-~~~~~R~~~---~~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         107 GTPLEKAIELKVDD-ELLVARITN---ADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  179 (180)
T ss_dssp             TCCCCEEEEEECCH-HHHHHHHHS---HHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             CCCceeeeeccccc-chhhhcccc---cccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            3445 678888864 4433 2432   34566666543211    011211112 3444 34899999999988764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0059  Score=45.14  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=18.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHHhcc
Q psy10228        190 TAVVQGDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       190 d~vI~Nddleea~~~lk~iI~~~~  213 (225)
                      -..|.|.++++.++++...|...-
T Consensus       159 ~i~i~~~~~~e~~~~i~~~I~~ll  182 (192)
T d1lw7a2         159 YIEIESPSYLDRYNQVKAVIEKVL  182 (192)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHH
Confidence            345667789999999999887643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.83  E-value=0.00035  Score=56.06  Aligned_cols=157  Identities=10%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             CccEEEEccCCCCCCCcccCCC-CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRAR-REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHC  127 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~-R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~  127 (225)
                      ...|.|+|.||||||+..-.-- +-.+..|....++ +-+.+...+..+.  .|..... ..+---..-......+|..+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~l-dgD~iR~~l~~~l--~ys~~~r~~~~~r~~~~a~~~~~~g~~v  100 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL-DGDNIRFGLNKDL--GFSEADRNENIRRIAEVAKLFADSNSIA  100 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE-CHHHHTTTTTTTC--CSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEE-cchHHHHhhcCCC--CCChhHHHHHHHHHHHHHHHHhccCCce
Confidence            3478999999999992211100 0111123333444 5566655432210  0000000 00000111124455678888


Q ss_pred             EEEc-cH-----HHHHHHHh------hccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHH--------hh-
Q psy10228        128 ILDV-SG-----NAIKRLQV------ASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQ--------EF-  185 (225)
Q Consensus       128 ildv-~~-----~gvk~L~~------~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~--------~~-  185 (225)
                      +++. .+     +.++.+-.      ....+ +.|||.+| ++++   .+|...    .....+.+-+.        .| 
T Consensus       101 iv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~-le~~---~~Rd~k----~~y~~~~~~~~~~~~gvd~~ye  172 (208)
T d1m7ga_         101 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVA---EQRDPK----GLYKKAREGVIKEFTGISAPYE  172 (208)
T ss_dssp             EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHH---HTSCTT----CHHHHHHHTSSSSCBTTTBCCC
T ss_pred             eeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCC-HHHH---HHhhcc----cchhhhhcCcccceecccccCC
Confidence            8874 32     11222211      01233 56999985 4554   444321    11222211111        12 


Q ss_pred             -CCCCcEEEECC--CHHHHHHHHHHHHHhccCCceeeeC
Q psy10228        186 -GEFFTAVVQGD--MPEDIYQKVKEVIQEQSGPSIWVPS  221 (225)
Q Consensus       186 -~~~fd~vI~Nd--dleea~~~lk~iI~~~~~~~~WVp~  221 (225)
                       ....|.+|.++  ++++++++|.+.|....    |+|.
T Consensus       173 ~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~~~----~i~~  207 (208)
T d1m7ga_         173 APANPEVHVKNYELPVQDAVKQIIDYLDTKG----YLPA  207 (208)
T ss_dssp             CCSSCSEEEECSSSCHHHHHHHHHHHHHHTT----CSCC
T ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHHHHHcC----CCCC
Confidence             22468888766  79999999999998763    6664

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0039  Score=45.17  Aligned_cols=27  Identities=7%  Similarity=0.247  Sum_probs=18.4

Q ss_pred             hhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228        184 EFGEFFTAVVQGD--MPEDIYQKVKEVIQ  210 (225)
Q Consensus       184 ~~~~~fd~vI~Nd--dleea~~~lk~iI~  210 (225)
                      .|...+|++|.++  ++++++++|..+|+
T Consensus       141 ~y~~~~d~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         141 LYEEIADVTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             HHHHHCSEEC-----CHHHHHHHHHHHHC
T ss_pred             hhhccCCEEEECCCCCHHHHHHHHHHHhC
Confidence            3445678888765  58999999988773

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.031  Score=43.66  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228        145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE  211 (225)
Q Consensus       145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~  211 (225)
                      +-.+|+|.+|....++++.+|  .+.+++.+|+..-...+ ......|+||.|+ ++++...+|..++..
T Consensus       125 ~~~iI~V~a~~e~r~~R~~~R~~~~~~~~~~~~~~Q~~~~-~k~~~aD~vI~N~~~le~l~~~v~~l~~~  193 (208)
T d1vhta_         125 ANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATRE-ARLAVADDVIDNNGAPDAIASDVARLHAH  193 (208)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHSCCHH-HHHHHCSEEEECSSCTTSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhhhHHHHHHHHHhCCCHH-HHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence            446789987765556664444  47788887776521111 1235679999998 688888887777653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.014  Score=47.32  Aligned_cols=28  Identities=11%  Similarity=0.001  Sum_probs=21.3

Q ss_pred             CccEEEEccCCCCCC------------------------CcccCCCCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT------------------------EDTTRARREYEVD   77 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~------------------------s~TTRp~R~~E~d   77 (225)
                      .+..+++|+||+|||                        .||||-..-.+.+
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~  146 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD  146 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC
Confidence            357899999999998                        8999988766654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.21  Score=39.36  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             cHHHHHHHHHc-------C--CeEEEE----ccHHHHHHHHhh-ccCC---eEEEEecCCHHHHHH-HhccC--------
Q psy10228        113 SVASVRDVAEK-------G--KHCILD----VSGNAIKRLQVA-SLYP---VAIFIKPKSVESIME-MNKRM--------  166 (225)
Q Consensus       113 s~~sV~~v~~~-------g--k~~ild----v~~~gvk~L~~~-~~~P---i~IFI~pps~~~L~~-L~~R~--------  166 (225)
                      ..+.|+++++.       |  +++|+|    ++.++...|... +.+|   +.|++. .+...|.. ++.|.        
T Consensus        96 ~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~t-n~~~~i~~~i~SRc~~i~~~~~  174 (239)
T d1njfa_          96 KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT-TDPQKLPVTILSRCLQFHLKAL  174 (239)
T ss_dssp             SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE-SCGGGSCHHHHTTSEEEECCCC
T ss_pred             CHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEc-CCccccChhHhhhhcccccccC
Confidence            45667777755       2  356666    345565555442 3332   344443 34444443 66554        


Q ss_pred             CHHHHHHHHHHHHHHHHhhCCCCc-----EEE--ECCCHHHHHHHHHHHHHhc
Q psy10228        167 TEEQAKKMYDRSMKMEQEFGEFFT-----AVV--QGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       167 seeei~~rl~~a~k~E~~~~~~fd-----~vI--~Nddleea~~~lk~iI~~~  212 (225)
                      +.+++.+++.+..+.|.   ..+|     .++  .+.|+-.|.+.|...+...
T Consensus       175 ~~~~i~~~l~~i~~~e~---~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~  224 (239)
T d1njfa_         175 DVEQIRHQLEHILNEEH---IAHEPRALQLLARAAEGSLRDALSLTDQAIASG  224 (239)
T ss_dssp             CHHHHHHHHHHHHHHHT---CCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHhhhHHHHHHhhhc---cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            67888877776543231   1122     121  2457777777776655443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.84  E-value=0.017  Score=44.31  Aligned_cols=13  Identities=0%  Similarity=-0.181  Sum_probs=12.2

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|+|.|+-|||||
T Consensus         2 lI~ieG~dGsGKS   14 (208)
T d1gsia_           2 LIAIEGVDGAGKR   14 (208)
T ss_dssp             EEEEECSTTSSHH
T ss_pred             EEEEECCCCCCHH
Confidence            5899999999999

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.19  Score=39.06  Aligned_cols=13  Identities=0%  Similarity=-0.066  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -++|.||+|+||+
T Consensus        26 ~lLl~Gp~G~GKt   38 (207)
T d1a5ta2          26 ALLIQALPGMGDD   38 (207)
T ss_dssp             EEEEECCTTSCHH
T ss_pred             EEEEECCCCCcHH
Confidence            4899999999998

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.45  Score=38.13  Aligned_cols=17  Identities=6%  Similarity=-0.033  Sum_probs=14.9

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++++.|+||||||||
T Consensus        24 ~~Gei~~liGpsGsGKS   40 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKS   40 (232)
T ss_dssp             CTTCEEEEECCTTSSHH
T ss_pred             cCCCEEEEECCCCChHH
Confidence            44679999999999998

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.13  E-value=0.029  Score=45.97  Aligned_cols=45  Identities=11%  Similarity=0.067  Sum_probs=27.9

Q ss_pred             CCCccEEEEccCCCCCC-----CcccCCCCCCC--CCCcceEEecCHHHHHHh
Q psy10228         48 SDQEPFMLCYTQDDPTT-----EDTTRARREYE--VDGRDYHFVSSREQMEKD   93 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~-----s~TTRp~R~~E--~dG~dY~FV~s~eef~~~   93 (225)
                      ..++.+.|+||||||||     -.=--+|-.|+  ++|.+..-+ +.+.+...
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~   90 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY-TLASLRNQ   90 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB-CHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchh-hhhhhhhe
Confidence            34578999999999999     00112334454  577765555 55665543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.04  E-value=0.04  Score=40.23  Aligned_cols=26  Identities=23%  Similarity=0.153  Sum_probs=20.0

Q ss_pred             CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228        187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       187 ~~fd~vI~Nd--dleea~~~lk~iI~~~  212 (225)
                      ...|++|.++  ++++++++|...|+..
T Consensus       150 ~~~di~IDT~~~s~~e~v~~I~~~L~~~  177 (183)
T d1m8pa3         150 EKADLVVDFSKQSVRSIVHEIILVLESQ  177 (183)
T ss_dssp             SSCSEEECTTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3467887654  7899999999988753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.17  E-value=0.045  Score=40.81  Aligned_cols=12  Identities=0%  Similarity=0.038  Sum_probs=11.6

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|++++|||
T Consensus         3 I~lvG~~nvGKS   14 (184)
T d2cxxa1           3 IIFAGRSNVGKS   14 (184)
T ss_dssp             EEEEEBTTSSHH
T ss_pred             EEEECCCCCCHH
Confidence            899999999999

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=88.99  E-value=0.045  Score=41.84  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=17.9

Q ss_pred             CCc-EEEECC--CHHHHHHHHHHHHHh
Q psy10228        188 FFT-AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       188 ~fd-~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ..| ++|.++  ++|+.++++.++|++
T Consensus       194 ~~~~~~Id~s~~s~eeV~~~I~~~I~~  220 (225)
T d1ckea_         194 AADALVLDSTTLSIEQVIEKALQYARQ  220 (225)
T ss_dssp             CTTCEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            344 455554  799999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.90  E-value=0.018  Score=46.91  Aligned_cols=14  Identities=0%  Similarity=-0.078  Sum_probs=12.4

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ...+|+|+||+|||
T Consensus        98 ~~~vl~G~SGVGKS  111 (231)
T d1t9ha2          98 KTTVFAGQSGVGKS  111 (231)
T ss_dssp             SEEEEEESHHHHHH
T ss_pred             ceEEEECCCCccHH
Confidence            46789999999998

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.79  E-value=0.048  Score=40.37  Aligned_cols=12  Identities=8%  Similarity=-0.006  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+||+|||||
T Consensus         3 i~I~G~~G~GKS   14 (178)
T d1ye8a1           3 IIITGEPGVGKT   14 (178)
T ss_dssp             EEEECCTTSSHH
T ss_pred             EEEECCCCcHHH
Confidence            789999999999

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.053  Score=39.53  Aligned_cols=13  Identities=8%  Similarity=-0.072  Sum_probs=12.2

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|.|+|++|||||
T Consensus         4 vi~itG~~GSGKT   16 (170)
T d1np6a_           4 LLAFAAWSGTGKT   16 (170)
T ss_dssp             EEEEECCTTSCHH
T ss_pred             EEEEEcCCCCCHH
Confidence            6789999999999

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.45  E-value=0.06  Score=39.27  Aligned_cols=14  Identities=14%  Similarity=-0.031  Sum_probs=12.8

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      +-|+|+||+|+|||
T Consensus         2 k~v~ItG~~GtGKT   15 (189)
T d2i3ba1           2 RHVFLTGPPGVGKT   15 (189)
T ss_dssp             CCEEEESCCSSCHH
T ss_pred             cEEEEECCCCCcHH
Confidence            46899999999999

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.13  E-value=0.016  Score=45.31  Aligned_cols=66  Identities=11%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-ceeecHHHHHHHHHcCCeEE
Q psy10228         50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYGTSVASVRDVAEKGKHCI  128 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YGTs~~sV~~v~~~gk~~i  128 (225)
                      +.=++|+|+||+|||+.+.+-.+.      -|-|| +          ++.+.....+|+ .+|.+.+.++..++---..+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~------g~~lv-~----------DD~~~i~~~~~~~l~~~~p~~~~~~~EvrG~Gi   76 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR------GHRLI-A----------DDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGI   76 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT------TCEEE-E----------EEEEEEEEEETTEEEEECCGGGTTEEEETTTEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc------CCeEE-e----------cCeEEEEEecCCEEEEECchHhhhHHHhcCcce
Confidence            346899999999999555443321      24566 3          356666666665 88888877776666555667


Q ss_pred             EEcc
Q psy10228        129 LDVS  132 (225)
Q Consensus       129 ldv~  132 (225)
                      +|+.
T Consensus        77 i~v~   80 (176)
T d1kkma_          77 IDVM   80 (176)
T ss_dssp             EEHH
T ss_pred             Eech
Confidence            7764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=87.85  E-value=0.062  Score=38.61  Aligned_cols=12  Identities=8%  Similarity=0.075  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|++|+|||
T Consensus         3 ivlvG~~~vGKS   14 (160)
T d1r8sa_           3 ILMVGLDAAGKT   14 (160)
T ss_dssp             EEEECSTTSSHH
T ss_pred             EEEECCCCCCHH
Confidence            789999999999

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.49  E-value=0.044  Score=43.10  Aligned_cols=17  Identities=6%  Similarity=-0.163  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||+|||||
T Consensus        25 ~~Gei~~l~G~NGsGKS   41 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKT   41 (200)
T ss_dssp             ETTCCEEEECCTTSSHH
T ss_pred             cCCCEEEEECCCCChHH
Confidence            34568999999999999

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.36  E-value=0.057  Score=40.11  Aligned_cols=19  Identities=5%  Similarity=0.170  Sum_probs=14.8

Q ss_pred             CCCHHHHHHHHHHHHHhcc
Q psy10228        195 GDMPEDIYQKVKEVIQEQS  213 (225)
Q Consensus       195 Nddleea~~~lk~iI~~~~  213 (225)
                      |+++++..+.|.+.|.+..
T Consensus       149 g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         149 NINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TBSHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCCCC
Confidence            5689999998888776553

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.86  E-value=0.059  Score=40.91  Aligned_cols=14  Identities=14%  Similarity=0.221  Sum_probs=12.5

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      --|+|+|++++|||
T Consensus         4 p~V~lvG~~n~GKT   17 (209)
T d1nrjb_           4 PSIIIAGPQNSGKT   17 (209)
T ss_dssp             CEEEEECSTTSSHH
T ss_pred             CEEEEECCCCCCHH
Confidence            35899999999999

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.81  E-value=0.084  Score=42.69  Aligned_cols=35  Identities=3%  Similarity=-0.046  Sum_probs=24.1

Q ss_pred             ccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEec
Q psy10228         51 EPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFVS   85 (225)
Q Consensus        51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV~   85 (225)
                      .-|+|+|.+|+|||                 +.|||.+..+  +.+|..+.|++
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viD   86 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIID   86 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEe
Confidence            35899999999999                 4556554332  56666666663

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.29  E-value=0.11  Score=40.83  Aligned_cols=38  Identities=11%  Similarity=0.094  Sum_probs=22.0

Q ss_pred             ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHH
Q psy10228         51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEK   92 (225)
Q Consensus        51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~   92 (225)
                      .-|+|.||+|+|||+..-.-  .+|. +.+|+.+ +-++|..
T Consensus        33 ~~ilL~GpPGtGKT~la~~l--a~~~-~~~~~~i-~~d~~~~   70 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAI--FEET-QGNVIVI-DNDTFKQ   70 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHH--HHHT-TTCCEEE-CTHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHH--HHHh-hcceEEE-ecHHHHH
Confidence            46899999999999211000  0111 3456677 6666543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.02  E-value=0.14  Score=40.07  Aligned_cols=15  Identities=20%  Similarity=-0.068  Sum_probs=13.5

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...++|.||+|+|||
T Consensus        52 ~~~lll~GPpG~GKT   66 (253)
T d1sxja2          52 FRAAMLYGPPGIGKT   66 (253)
T ss_dssp             CSEEEEECSTTSSHH
T ss_pred             CceEEEECCCCCCHH
Confidence            457999999999999

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.68  E-value=0.11  Score=41.90  Aligned_cols=43  Identities=9%  Similarity=0.051  Sum_probs=26.2

Q ss_pred             CCCccEEEEccCCCCCC-----CcccCCCCCCC--CCCcceEEecCHHHHH
Q psy10228         48 SDQEPFMLCYTQDDPTT-----EDTTRARREYE--VDGRDYHFVSSREQME   91 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~-----s~TTRp~R~~E--~dG~dY~FV~s~eef~   91 (225)
                      ..++.+.|+||||||||     =..--+|-.|+  ++|.+..-. +..+..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~-~~~~~~   78 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL-DDDELT   78 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHH
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcC-Chhhcc
Confidence            34679999999999999     11112344553  466665444 455543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.40  E-value=0.097  Score=40.19  Aligned_cols=21  Identities=10%  Similarity=0.218  Sum_probs=17.2

Q ss_pred             EEEECC--CHHHHHHHHHHHHHh
Q psy10228        191 AVVQGD--MPEDIYQKVKEVIQE  211 (225)
Q Consensus       191 ~vI~Nd--dleea~~~lk~iI~~  211 (225)
                      ++|.|+  ++|+.+++++.+|++
T Consensus       199 i~Idts~~s~eeV~~~I~~~i~k  221 (223)
T d1q3ta_         199 VYLDTTGLNIQEVVEKIKAEAEK  221 (223)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHh
Confidence            566666  699999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.24  E-value=0.44  Score=38.02  Aligned_cols=13  Identities=15%  Similarity=0.056  Sum_probs=11.9

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      =|+|.||+|+|||
T Consensus        42 ~vLL~GppGtGKT   54 (246)
T d1d2na_          42 SVLLEGPPHSGKT   54 (246)
T ss_dssp             EEEEECSTTSSHH
T ss_pred             EEEEECcCCCCHH
Confidence            3899999999999

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=85.16  E-value=0.18  Score=39.26  Aligned_cols=13  Identities=15%  Similarity=-0.000  Sum_probs=12.2

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|.||+|+|||
T Consensus        37 ~~Ll~GPpG~GKT   49 (239)
T d1ixsb2          37 HLLLFGPPGLGKT   49 (239)
T ss_dssp             CEEEECCTTSCHH
T ss_pred             eEEEECCCCCCHH
Confidence            5899999999999

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.12  Score=41.98  Aligned_cols=42  Identities=12%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             CCCccEEEEccCCCCCC------CcccCCCCCCC--CCCcceEEecCHHHHH
Q psy10228         48 SDQEPFMLCYTQDDPTT------EDTTRARREYE--VDGRDYHFVSSREQME   91 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~------s~TTRp~R~~E--~dG~dY~FV~s~eef~   91 (225)
                      ..++++.|+||||||||      .--. +|-.|+  ++|.+-.-. +..++.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-~p~sG~I~~~g~~i~~~-~~~~~~   78 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTL-SESELT   78 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS-CCSEEEEEETTEEECTT-CHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc-cccCCceEEcCeEeeeC-Chhhhh
Confidence            34579999999999999      1111 233443  566664433 444443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=83.92  E-value=0.13  Score=41.57  Aligned_cols=44  Identities=9%  Similarity=0.142  Sum_probs=29.5

Q ss_pred             CccEEEEccCCCCCC---Cccc--CCCCCCC--CCCcceEEecCHHHHHHhh
Q psy10228         50 QEPFMLCYTQDDPTT---EDTT--RARREYE--VDGRDYHFVSSREQMEKDI   94 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~---s~TT--Rp~R~~E--~dG~dY~FV~s~eef~~~i   94 (225)
                      ++.+.|+||||||||   ..-+  -+|-.|+  ++|.|..-. +.+++.+.|
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~-~~~~lr~~i   79 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA-DPNWLRRQV   79 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS-CHHHHHHHE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEeccc-chhhhhceE
Confidence            568999999999999   1111  1233454  788877666 677776543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.69  E-value=0.14  Score=41.67  Aligned_cols=14  Identities=7%  Similarity=-0.026  Sum_probs=12.7

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      ++++|+||||||||
T Consensus        25 e~~~liGpnGaGKS   38 (240)
T d2onka1          25 DYCVLLGPTGAGKS   38 (240)
T ss_dssp             SEEEEECCTTSSHH
T ss_pred             EEEEEECCCCChHH
Confidence            47889999999999

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=83.66  E-value=0.17  Score=40.22  Aligned_cols=36  Identities=8%  Similarity=-0.008  Sum_probs=21.5

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCC
Q psy10228        188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKD  223 (225)
Q Consensus       188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~  223 (225)
                      .++.+|..- |-...+..+..+.....-|..||-.++
T Consensus       157 ~~~~lI~TKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq  193 (213)
T d1vmaa2         157 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGE  193 (213)
T ss_dssp             CCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSS
T ss_pred             CCceEEEecccCCCcccHHHHHHHHHCCCEEEEeCCC
Confidence            356555432 434445667777777777777776553

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.19  Score=39.95  Aligned_cols=37  Identities=8%  Similarity=-0.091  Sum_probs=23.5

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228        188 FFTAVVQG-DMPEDIYQKVKEVIQEQSGPSIWVPSKDP  224 (225)
Q Consensus       188 ~fd~vI~N-ddleea~~~lk~iI~~~~~~~~WVp~~~~  224 (225)
                      .++.+|.. =|-..-+..+..+.....-|..|+-..++
T Consensus       155 ~~~~lIlTKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~  192 (211)
T d2qy9a2         155 GLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER  192 (211)
T ss_dssp             CCCEEEEECCTTCTTTTHHHHHHHHHCCCEEEEECSSS
T ss_pred             CCceEEEeecCCCCCccHHHHHHHHHCCCEEEEeCCCC
Confidence            35655543 25455567777777777777777776643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.15  Score=41.46  Aligned_cols=44  Identities=9%  Similarity=0.031  Sum_probs=27.2

Q ss_pred             CCccEEEEccCCCCCC---Cccc--CCCCCCC--CCCcceEEecCHHHHHHh
Q psy10228         49 DQEPFMLCYTQDDPTT---EDTT--RARREYE--VDGRDYHFVSSREQMEKD   93 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~---s~TT--Rp~R~~E--~dG~dY~FV~s~eef~~~   93 (225)
                      .++.+.|+||||||||   ..-+  -+|-.|+  +||.|..-. +...+.+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~   89 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY-EHRYLHRQ   89 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-CHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchh-hhHHHHHH
Confidence            3579999999999999   1111  1233453  677765544 55555543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.18  E-value=0.096  Score=38.02  Aligned_cols=12  Identities=0%  Similarity=0.036  Sum_probs=11.5

Q ss_pred             EEEEccCCCCCC
Q psy10228         53 FMLCYTQDDPTT   64 (225)
Q Consensus        53 ivl~GpsgsGK~   64 (225)
                      |+|+|.+++|||
T Consensus         3 I~liG~~n~GKS   14 (160)
T d1xzpa2           3 MVIVGKPNVGKS   14 (160)
T ss_dssp             EEEECCHHHHTC
T ss_pred             EEEECCCCCCHH
Confidence            799999999999

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=83.15  E-value=0.14  Score=41.44  Aligned_cols=16  Identities=0%  Similarity=-0.062  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        27 ~Ge~vaivG~sGsGKS   42 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKS   42 (242)
T ss_dssp             TTEEEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCCCHH
Confidence            3578999999999999

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.10  E-value=0.15  Score=40.22  Aligned_cols=15  Identities=20%  Similarity=0.186  Sum_probs=13.3

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ..+|+|+||+|+|||
T Consensus        10 ~~vi~lvGp~GvGKT   24 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKT   24 (207)
T ss_dssp             SEEEEEECCTTTTHH
T ss_pred             CcEEEEECCCCCCHH
Confidence            358899999999998

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.16  Score=37.43  Aligned_cols=15  Identities=7%  Similarity=-0.254  Sum_probs=14.0

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ++.++|+||+|+|||
T Consensus        23 G~v~~i~G~~GsGKT   37 (242)
T d1n0wa_          23 GSITEMFGEFRTGKT   37 (242)
T ss_dssp             TSEEEEECCTTSSHH
T ss_pred             CEEEEEEeCCCCCHH
Confidence            568999999999999

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.92  E-value=0.17  Score=40.03  Aligned_cols=15  Identities=7%  Similarity=-0.059  Sum_probs=13.6

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      ...|+++||+|||||
T Consensus         6 ~~vi~lvGptGvGKT   20 (207)
T d1okkd2           6 GRVVLVVGVNGVGKT   20 (207)
T ss_dssp             SSEEEEECSTTSSHH
T ss_pred             CEEEEEECCCCCCHH
Confidence            468899999999999

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.90  E-value=0.14  Score=38.46  Aligned_cols=45  Identities=11%  Similarity=0.020  Sum_probs=25.5

Q ss_pred             cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCC
Q psy10228         52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNH   97 (225)
Q Consensus        52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~   97 (225)
                      +|+++|.+|||||+..-+-.+.-...|.+..-+ +.+.+...+...
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~-~~D~~r~~~~~~   48 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREF-NVGQYRRDMVKT   48 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEE-cccceehhhccc
Confidence            689999999999932221111111234455555 666666555443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.55  E-value=0.18  Score=40.85  Aligned_cols=16  Identities=25%  Similarity=0.081  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        31 ~Ge~~~liGpsGaGKS   46 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKT   46 (239)
T ss_dssp             TTCEEEEECCTTSSHH
T ss_pred             CCCEEEEECCCCChHH
Confidence            3568999999999999

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.54  E-value=0.15  Score=39.59  Aligned_cols=13  Identities=8%  Similarity=0.010  Sum_probs=12.0

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .++|+||+|+||+
T Consensus        47 ~lll~Gp~G~GKT   59 (231)
T d1iqpa2          47 HLLFAGPPGVGKT   59 (231)
T ss_dssp             EEEEESCTTSSHH
T ss_pred             eEEEECCCCCcHH
Confidence            4899999999998

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=82.25  E-value=0.33  Score=38.42  Aligned_cols=37  Identities=0%  Similarity=-0.055  Sum_probs=25.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228        188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP  224 (225)
Q Consensus       188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~  224 (225)
                      ..+.+|..- |-...+..+.+++.+..-|..|+-..++
T Consensus       154 ~~~~lI~TKlDet~~~G~~l~~~~~~~lPi~~it~Gq~  191 (211)
T d1j8yf2         154 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEK  191 (211)
T ss_dssp             TTEEEEEECTTSCSCHHHHHHHHHTTTCCEEEEECSSS
T ss_pred             CcceEEEecccCCCcccHHHHHHHHHCcCEEEEeCCCC
Confidence            346555443 5566677888888888888888876643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=82.21  E-value=0.16  Score=39.58  Aligned_cols=13  Identities=15%  Similarity=-0.015  Sum_probs=12.1

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      -++|+||+|+|||
T Consensus        37 ~~L~~GPpGtGKT   49 (238)
T d1in4a2          37 HVLLAGPPGLGKT   49 (238)
T ss_dssp             CEEEESSTTSSHH
T ss_pred             eEEEECCCCCcHH
Confidence            4899999999999

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=82.04  E-value=0.18  Score=40.81  Aligned_cols=16  Identities=25%  Similarity=0.092  Sum_probs=14.4

Q ss_pred             CCccEEEEccCCCCCC
Q psy10228         49 DQEPFMLCYTQDDPTT   64 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~   64 (225)
                      .++.+.|+||||||||
T Consensus        28 ~Ge~~~liG~sGaGKS   43 (240)
T d1g2912          28 DGEFMILLGPSGCGKT   43 (240)
T ss_dssp             TTCEEEEECSTTSSHH
T ss_pred             CCCEEEEECCCCChHH
Confidence            3578999999999998

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=81.88  E-value=0.21  Score=38.43  Aligned_cols=13  Identities=15%  Similarity=0.028  Sum_probs=12.2

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      +|+|+||.|||||
T Consensus         2 vi~v~G~~GsGKT   14 (244)
T d1yrba1           2 IVVFVGTAGSGKT   14 (244)
T ss_dssp             EEEEECSTTSSHH
T ss_pred             EEEEEcCCCCcHH
Confidence            5899999999999

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.57  E-value=0.18  Score=41.03  Aligned_cols=44  Identities=7%  Similarity=0.024  Sum_probs=27.9

Q ss_pred             CCccEEEEccCCCCCC---Ccc--cCCCCCCCC--CCcceEEecCHHHHHHh
Q psy10228         49 DQEPFMLCYTQDDPTT---EDT--TRARREYEV--DGRDYHFVSSREQMEKD   93 (225)
Q Consensus        49 ~~~~ivl~GpsgsGK~---s~T--TRp~R~~E~--dG~dY~FV~s~eef~~~   93 (225)
                      .++.+.|+||||||||   ..-  --+|-.|++  +|.|..-. +.+++.+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~-~~~~lr~~   93 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF-LTGSLRNQ   93 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-CHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccC-CHHHhhhe
Confidence            3568999999999999   111  122334544  77765555 66666554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=81.52  E-value=0.13  Score=41.57  Aligned_cols=18  Identities=17%  Similarity=0.071  Sum_probs=15.4

Q ss_pred             CCCCccEEEEccCCCCCC
Q psy10228         47 GSDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        47 ~~~~~~ivl~GpsgsGK~   64 (225)
                      -..++++.|+||||||||
T Consensus        23 i~~Ge~~~liGpsGaGKS   40 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKT   40 (229)
T ss_dssp             ECTTCEEEEECCCTHHHH
T ss_pred             ECCCCEEEEECCCCCcHH
Confidence            344679999999999998

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.04  E-value=0.18  Score=41.72  Aligned_cols=14  Identities=7%  Similarity=0.005  Sum_probs=12.5

Q ss_pred             ccEEEEccCCCCCC
Q psy10228         51 EPFMLCYTQDDPTT   64 (225)
Q Consensus        51 ~~ivl~GpsgsGK~   64 (225)
                      .-++|.||||+|||
T Consensus        50 ~~iLl~GPpG~GKT   63 (309)
T d1ofha_          50 KNILMIGPTGVGKT   63 (309)
T ss_dssp             CCEEEECCTTSSHH
T ss_pred             ceEEEECCCCCCHH
Confidence            45889999999999

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.66  E-value=0.27  Score=36.60  Aligned_cols=19  Identities=5%  Similarity=0.146  Sum_probs=14.5

Q ss_pred             ECCCHHHHHHHHHHHHHhc
Q psy10228        194 QGDMPEDIYQKVKEVIQEQ  212 (225)
Q Consensus       194 ~Nddleea~~~lk~iI~~~  212 (225)
                      .+..+++.+..|.+.+.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         156 TREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CSSTTHHHHHHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHhhhhC
Confidence            3467999999988888653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.64  E-value=0.17  Score=37.68  Aligned_cols=13  Identities=0%  Similarity=-0.161  Sum_probs=12.3

Q ss_pred             cEEEEccCCCCCC
Q psy10228         52 PFMLCYTQDDPTT   64 (225)
Q Consensus        52 ~ivl~GpsgsGK~   64 (225)
                      .|+|+|.+|+|||
T Consensus         7 ~I~lvG~~~~GKS   19 (178)
T d1wf3a1           7 FVAIVGKPNVGKS   19 (178)
T ss_dssp             EEEEECSTTSSHH
T ss_pred             EEEEECCCCCCHH
Confidence            5899999999999

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=80.35  E-value=0.19  Score=44.05  Aligned_cols=15  Identities=7%  Similarity=0.000  Sum_probs=13.2

Q ss_pred             CccEEEEccCCCCCC
Q psy10228         50 QEPFMLCYTQDDPTT   64 (225)
Q Consensus        50 ~~~ivl~GpsgsGK~   64 (225)
                      +.=|+++||||||||
T Consensus        49 ksNILliGPTGvGKT   63 (443)
T d1g41a_          49 PKNILMIGPTGVGKT   63 (443)
T ss_dssp             CCCEEEECCTTSSHH
T ss_pred             cccEEEECCCCCCHH
Confidence            345999999999999

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.19  E-value=0.24  Score=40.83  Aligned_cols=17  Identities=12%  Similarity=0.073  Sum_probs=14.8

Q ss_pred             CCCccEEEEccCCCCCC
Q psy10228         48 SDQEPFMLCYTQDDPTT   64 (225)
Q Consensus        48 ~~~~~ivl~GpsgsGK~   64 (225)
                      ..++.+.|+||||||||
T Consensus        60 ~~Ge~vaivG~nGsGKS   76 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKT   76 (281)
T ss_dssp             CTTCEEEEEESTTSSHH
T ss_pred             cCCCEEEEECCCCChHH
Confidence            34678999999999999