Psyllid ID: psy10231
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | 2.2.26 [Sep-21-2011] | |||||||
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.571 | 0.711 | 0.305 | 2e-48 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.700 | 0.304 | 2e-47 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.700 | 0.304 | 2e-46 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.571 | 0.691 | 0.303 | 3e-45 | |
| B4LPX5 | 911 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.375 | 0.292 | 5e-44 | |
| B4QBN2 | 857 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.399 | 0.301 | 7e-44 | |
| B4KR05 | 863 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.396 | 0.289 | 9e-44 | |
| B4P624 | 856 | Facilitated trehalose tra | N/A | N/A | 0.563 | 0.399 | 0.295 | 1e-42 | |
| B4MYA4 | 872 | Facilitated trehalose tra | N/A | N/A | 0.565 | 0.393 | 0.286 | 1e-42 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.579 | 0.698 | 0.284 | 1e-42 |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 174/350 (49%), Gaps = 3/350 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+TG +G++S + VY+ E P RG L ++G+L+ Y G + W +
Sbjct: 130 FLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFL 189
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELKE+ QS
Sbjct: 190 GAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADAD 249
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
++ + C + F + + KP I +G FQ+ SG+ V++Y V F+DAGS++D +++
Sbjct: 250 RQATQNTCLELFKRNNL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLST 308
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + FF +G I R+ L S M +++ I G + +Y D L W
Sbjct: 309 IIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGF-FYCKAHGPDVSHLGW 367
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL C + + LG +PW+M+ E+ P +RG +V + + F K + DL
Sbjct: 368 LPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLT 427
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMAD 581
+ G W F C++ + F+ F+PET+GK+L EIE G+ M+
Sbjct: 428 VAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKMMGRVPMSS 477
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Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 172/345 (49%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+TG +G++S + VY+ E P RG L ++G+L+ Y G + W +
Sbjct: 130 FLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFL 189
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELK++ QS
Sbjct: 190 GAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEAD 249
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
+ ++ + C + F + KP I +G FQ+ SG+ V++Y V F+DAGS++D + +
Sbjct: 250 SQATRNTCLELFKRINL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCT 308
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + FF +G I R+ L S M L++ I G + +Y D L W
Sbjct: 309 IIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGF-FYCKAHGPDVSHLGW 367
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL+C + + LG +PW+M+ E+ P +RG +V + + F K + DL
Sbjct: 368 LPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLT 427
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
+ G W F C++ + F+ ++PET+GK+L EIE G+
Sbjct: 428 VAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMGR 472
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Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+TG +G++S + VY+ E P RG L ++G+L+ Y G + W +
Sbjct: 130 FLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFL 189
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELK++ QS
Sbjct: 190 GAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEAD 249
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
+ + + C + F + KP I +G FQ+ SG+ V++Y V F+DAGS++D + +
Sbjct: 250 SQARRNTCLELFKRINL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCT 308
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + FF +G I R+ L S M L++ I G + +Y D L W
Sbjct: 309 IIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGF-FYCKAHGPDVSHLGW 367
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL C + + LG +PW+M+ E+ P +RG +V + + F K + DL
Sbjct: 368 LPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLT 427
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
+ G W F C++ + F+ +PET+GK+L EIE G+
Sbjct: 428 VAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMGR 472
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Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 181/359 (50%), Gaps = 12/359 (3%)
Query: 234 ITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
I G +G++S + VY+ E P RG L VF + G+L+ ++ G + W+ +
Sbjct: 145 ICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLG 204
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ----QSLK 348
A + ++ M +PETP W +G KEAR SL W R TA EL IQ +S +
Sbjct: 205 ACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESER 264
Query: 349 VQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDY 408
+ G+ + + F + + KP FI +G FQ+ SG+ V++Y V F+D+GS++D+
Sbjct: 265 IATEGALI----ELFRKNHI-KPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDEN 319
Query: 409 VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468
+++IIV + F + + I R+ L S+ M +++ GT+ +Y EL MD
Sbjct: 320 LSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTF-FYVKEL-MDVTA 377
Query: 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYP 528
WIPL ++ V G +PW+M+ E+ P+ +RG + + + F K Y
Sbjct: 378 FGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYE 437
Query: 529 DLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLE 587
DL+ + G W F +A +F+ +PET+G++L EIE F G + +L+
Sbjct: 438 DLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFAGPVRRTSAIANLK 496
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Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+ G +G++S + VY+ E P RG L F ++G+L+ + G + W +
Sbjct: 552 FLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFL 611
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +LVW R A + ELK + +S
Sbjct: 612 GASLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRGKEADVEPELKGLMRSQADAD 671
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
++ + + S + KP I +G FQ+ SG+ V++Y V F+DAGS++D V +
Sbjct: 672 RQATQNKMLELLKRSNL-KPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCT 730
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + F I + I R+ L S M L++ + G + +Y MD + W
Sbjct: 731 IIVGVVNFAATFIATILIDRAGRKVLLYVSNVMMVLTLFVLGGF-FYCKSSGMDTSNVGW 789
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL+C + + LG +PW+M+ E+ P +RG + + + F K + D++
Sbjct: 790 LPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMI 849
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
+ G W F C + + F+ ++PETQGKTL +IE G+
Sbjct: 850 DFMGAHGAFWMFGAICFIGLFFVIFYVPETQGKTLEDIERKMMGR 894
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Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila virilis (taxid: 7244) |
| >sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 167/345 (48%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+ G +G++S + VY+ E P RG L F ++G+L+ + G + W +
Sbjct: 498 FLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFL 557
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELK + +S
Sbjct: 558 GAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADAD 617
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
+S + + F + KP I +G FQ+ SG+ V++Y V F+DAGS++D + +
Sbjct: 618 RQASRNTMLELFKRINL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCT 676
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + FF +G I R+ L S M L++ I G + +Y D L W
Sbjct: 677 IIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGF-FYCKAHGPDVSHLGW 735
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL C + + LG +PW+M+ E+ P +RG +V + + F K + DL
Sbjct: 736 LPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLT 795
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
+ G W F C + + F+ ++PETQGKTL +IE G+
Sbjct: 796 GAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGR 840
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila simulans (taxid: 7240) |
| >sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 169/345 (48%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+ G +G++S + VY+ E P RG L F ++G+L+ + G + W +
Sbjct: 504 FLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFL 563
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
+ + M +PETP W +G + AR +LVW R A + ELK + +S
Sbjct: 564 GGTLPVPFLILMFLIPETPRWYVSRGREERARKALVWLRGKEADVEPELKGLMRSQADAD 623
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
++ + + S + KP I +G FQ+ SG+ V++Y V F+DAGS++D V +
Sbjct: 624 RQATQNTMLELLKRSNL-KPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCT 682
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + F I + I R+ L S M L++ + G + +Y MD + W
Sbjct: 683 IIVGVVNFMATFIATVLIDRAGRKILLYVSNVAMILTLFVLGGF-FYCKSTGMDTSNVGW 741
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL+C + + LG +PW+M+ E+ P +RG + + + F K + D++
Sbjct: 742 LPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMI 801
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
++ G W F C + + F+ ++PETQGKTL +IE G+
Sbjct: 802 DVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTLEDIERKMMGR 846
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila mojavensis (taxid: 7230) |
| >sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 166/345 (48%), Gaps = 3/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+ G +G++S + VY+ E P RG L F ++G+L+ + G + W +
Sbjct: 497 FLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFL 556
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELK + +S
Sbjct: 557 GAALPVPFLILMFLIPETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRSQADAD 616
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
++ + + + + KP I +G FQ+ SG+ V++Y V F+DAGS++D V +
Sbjct: 617 RQATQNTMLELLKRNNL-KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCT 675
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + F IG I R+ L S M L++ + G + +Y D L W
Sbjct: 676 IIVGVVNFVATFIGILLIDRAGRKILLYASDIAMVLTLFVLGGF-FYCKAHGPDVSHLGW 734
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL C + + +G +PW+M+ E+ P +RG + S + F K + DL+
Sbjct: 735 LPLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLV 794
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
L G W F C + + F+ ++PETQGKTL +IE G+
Sbjct: 795 GSLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDIERKMMGR 839
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila yakuba (taxid: 7245) |
| >sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 167/345 (48%), Gaps = 2/345 (0%)
Query: 233 FITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA 291
F+ G +G++S + VY+ E P RG L F ++G+L+ + G + W +
Sbjct: 512 FLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFL 571
Query: 292 CAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351
A + + M +PETP W +G + AR +L W R A + ELK + +S +
Sbjct: 572 GAALPVPFLILMFLIPETPRWYVSRGREERARKALSWLRGKEADVEPELKGLLRS-QADA 630
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
S+ + KP I +G FQ+ SG+ V++Y V F+DAGS++D V +
Sbjct: 631 DRSATQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNVCT 690
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + F IG I R+ L S M +++ + G + Y + +D + W
Sbjct: 691 IIVGIVNFMATFIGIILIDRAGRKILLYVSNVAMIITLFVLGGFFYCKDKAGIDVSNVGW 750
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL+C + + LG +PW+M+ E+ P +RG + + + F K + D++
Sbjct: 751 LPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDML 810
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
++ G W F C + + F+ ++PETQGKTL +IE G+
Sbjct: 811 DVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKMMGR 855
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila willistoni (taxid: 7260) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 171/355 (48%), Gaps = 3/355 (0%)
Query: 234 ITGMAIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
++G +G++S + VY+ E P RG L F ++G+LI + G V W +
Sbjct: 146 LSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIG 205
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
+++ + +PETP W +G + AR +L W R A + ELK I +S
Sbjct: 206 SILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAER 265
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
+S + S + KP I +G FQ+ SG+ V++Y V+ F+DAGS++D+ + +I
Sbjct: 266 HASQNAIFDLMKRSNL-KPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTI 324
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWI 472
IV + F + I R+ L S M +++ GT+ +Y+ D + W+
Sbjct: 325 IVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTF-FYYKNSGNDVSNIGWL 383
Query: 473 PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532
PLA + V G+ +PW+M+ E+ P +RG + + F K + D++
Sbjct: 384 PLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVA 443
Query: 533 LLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLE 587
+ G W F CL+ + F+ F+PETQGK+L EIE G+ S +++
Sbjct: 444 AIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGRVRRMSSVANMK 498
|
High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| 328701837 | 496 | PREDICTED: facilitated trehalose transpo | 0.604 | 0.739 | 0.555 | 1e-104 | |
| 357611704 | 583 | hypothetical protein KGM_13558 [Danaus p | 0.560 | 0.583 | 0.426 | 4e-73 | |
| 91084359 | 484 | PREDICTED: similar to AGAP007667-PA [Tri | 0.556 | 0.698 | 0.401 | 3e-72 | |
| 270008828 | 522 | hypothetical protein TcasGA2_TC015433 [T | 0.556 | 0.647 | 0.401 | 4e-72 | |
| 307170747 | 484 | Sugar transporter ERD6-like 6 [Camponotu | 0.571 | 0.716 | 0.396 | 5e-71 | |
| 383854850 | 532 | PREDICTED: facilitated trehalose transpo | 0.573 | 0.654 | 0.392 | 2e-68 | |
| 322794505 | 513 | hypothetical protein SINV_10456 [Solenop | 0.551 | 0.653 | 0.380 | 5e-68 | |
| 307202951 | 521 | Solute carrier family 2, facilitated glu | 0.556 | 0.648 | 0.395 | 5e-68 | |
| 340724199 | 537 | PREDICTED: facilitated trehalose transpo | 0.548 | 0.620 | 0.391 | 8e-67 | |
| 380021871 | 559 | PREDICTED: facilitated trehalose transpo | 0.565 | 0.613 | 0.372 | 1e-66 |
| >gi|328701837|ref|XP_001944504.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 256/371 (69%), Gaps = 4/371 (1%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
FI+G+AIGMSSACYVYVAE+ L RG LS+FGP+FVS+GVLIVYSLG I+ WQ S C
Sbjct: 120 FISGVAIGMSSACYVYVAEVSLAKHRGVLSSFGPIFVSIGVLIVYSLGSIMPWQVVSIPC 179
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A+ +L+ F +++ PE+PSWLA +G +A SL+W RR ++AD EL EI +L
Sbjct: 180 ALTSLLSFLSVNLTPESPSWLASKGRVADAGKSLMWLRRKPSLADKELAEILNNLG--DG 237
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
S + FT AVWKPF IL+ FF+ QEASG+YI+LYYAVNFF+ AGS++D VASI
Sbjct: 238 NGSTAPMLRDFTAPAVWKPFLILVCFFVLQEASGIYIILYYAVNFFQVAGSTVDSNVASI 297
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWI 472
VA LR M++ GS CIQ +RR +A SA MA+SM G YE + LS+D RP W+
Sbjct: 298 AVAVLRLVMSVTGSVCIQHVNRRTMAMASAVLMAVSMAACGAYESAYGPLSVDARPYGWV 357
Query: 473 PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532
PLACIL NV SMLGM+ LPW+MI ELFPL VRGIMGG+V SLGY FIF TVKM P LM
Sbjct: 358 PLACILFNVSVSMLGMVPLPWMMIGELFPLKVRGIMGGLVPSLGYFFIFVTVKMSPGLMT 417
Query: 533 LLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHF-RGKKNMADSTEHLEKGFH 591
L +MW FS A +A F+ FLPET+GKTL++IE F G+ TE+LEK F
Sbjct: 418 ALTNDQIMWLFSAAAAVAACFVAVFLPETRGKTLVQIEKLFSSGEHEATKGTEYLEKKFK 477
Query: 592 QSTGS-IYTIN 601
+ S +YTI+
Sbjct: 478 PNDSSAVYTIS 488
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357611704|gb|EHJ67616.1| hypothetical protein KGM_13558 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 206/349 (59%), Gaps = 9/349 (2%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
FITG IGMS+A Y+YVAEI P RG LSA GP VS G+ IVYSLG + W+ +A C
Sbjct: 198 FITGFTIGMSTASYIYVAEITTPEKRGVLSALGPGLVSTGIFIVYSLGAFIHWRTVAAIC 257
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A V+L+ M+ VPE+P WLA +G KEA +++ W R++ A EL E + K Q
Sbjct: 258 AAVSLLTPFLMYFVPESPLWLASKGQMKEAYDAMFWLRQNNNTAQQELMEFTKDRK-QNE 316
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
+ F +V KPF +LI FF+FQE SG+Y++LYYAV+FF+ G+S++++ ASI
Sbjct: 317 SMTFKQKLGLFKRRSVLKPFALLIIFFMFQEMSGIYVILYYAVDFFKSVGTSVNEFTASI 376
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWI 472
IV G+R FM +G+ I F R+ LA S + ++M + + S++ P I
Sbjct: 377 IVGGVRVFMGAVGACLINSFRRKTLAAASGLLLGVAMLGAAVCD------SLNGPPS--I 428
Query: 473 PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532
L CIL +V SM+G LQLPW+M EL+P +RGIM G Y+ IF +K YP L
Sbjct: 429 KLGCILLHVSFSMVGFLQLPWIMSGELYPQDIRGIMSGATSCCAYVLIFFNIKTYPQLES 488
Query: 533 LLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMAD 581
L+ G ++ F+ +L + FLPET+GKTL EI F +K D
Sbjct: 489 LVTSNGTLYIFAICAILGATYCYLFLPETKGKTLTEIMRQFDEEKKEND 537
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084359|ref|XP_973264.1| PREDICTED: similar to AGAP007667-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 215/344 (62%), Gaps = 6/344 (1%)
Query: 234 ITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACA 293
+TG+A GMS+ACY YV+EI P +RG L + GP+ S G+L+ Y+LGY+++W +
Sbjct: 120 VTGIAAGMSTACYTYVSEISTPENRGILQSLGPICASFGILLTYTLGYVLSWSTVAFLSV 179
Query: 294 VVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAG 353
AL A+ +PE+PS+L + G +A +S WFRR+ A+A E+ + S K++++
Sbjct: 180 SFALFTLIAVEFLPESPSYLIKAGLHSKAFDSYFWFRRNVALAQTEVSKHASSEKIEISA 239
Query: 354 SSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASII 413
+ + ++A KPF IL+ F Q+ SG+Y +L+YAVNFFE+ LD+YV+SII
Sbjct: 240 K------EIYCSAATIKPFLILVTLFFLQQLSGIYTILFYAVNFFEETDLELDNYVSSII 293
Query: 414 VAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIP 473
V +RF M+++ + + F RR L S+ M+++M Y Y+ + + R L +P
Sbjct: 294 VGAIRFGMSMVTAILVNRFGRRLLCMASSGGMSVAMLAMVVYFKYYEMHAGEVRVLPVLP 353
Query: 474 LACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533
L C++ NV SM+GML +PW+++ ELFPL VR IM GIV + F+F VK+YPD++
Sbjct: 354 LVCVVFNVMFSMVGMLPIPWILVGELFPLEVRSIMSGIVICIAQCFVFLFVKIYPDMIEH 413
Query: 534 LNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKK 577
LN G + F A ++A+ F + LPET+ K+L EIE++F+ KK
Sbjct: 414 LNFSGTLMTFLLAAVVALFFCKFVLPETKNKSLQEIEDYFKRKK 457
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008828|gb|EFA05276.1| hypothetical protein TcasGA2_TC015433 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 215/344 (62%), Gaps = 6/344 (1%)
Query: 234 ITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACA 293
+TG+A GMS+ACY YV+EI P +RG L + GP+ S G+L+ Y+LGY+++W +
Sbjct: 158 VTGIAAGMSTACYTYVSEISTPENRGILQSLGPICASFGILLTYTLGYVLSWSTVAFLSV 217
Query: 294 VVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAG 353
AL A+ +PE+PS+L + G +A +S WFRR+ A+A E+ + S K++++
Sbjct: 218 SFALFTLIAVEFLPESPSYLIKAGLHSKAFDSYFWFRRNVALAQTEVSKHASSEKIEISA 277
Query: 354 SSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASII 413
+ + ++A KPF IL+ F Q+ SG+Y +L+YAVNFFE+ LD+YV+SII
Sbjct: 278 K------EIYCSAATIKPFLILVTLFFLQQLSGIYTILFYAVNFFEETDLELDNYVSSII 331
Query: 414 VAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIP 473
V +RF M+++ + + F RR L S+ M+++M Y Y+ + + R L +P
Sbjct: 332 VGAIRFGMSMVTAILVNRFGRRLLCMASSGGMSVAMLAMVVYFKYYEMHAGEVRVLPVLP 391
Query: 474 LACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533
L C++ NV SM+GML +PW+++ ELFPL VR IM GIV + F+F VK+YPD++
Sbjct: 392 LVCVVFNVMFSMVGMLPIPWILVGELFPLEVRSIMSGIVICIAQCFVFLFVKIYPDMIEH 451
Query: 534 LNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKK 577
LN G + F A ++A+ F + LPET+ K+L EIE++F+ KK
Sbjct: 452 LNFSGTLMTFLLAAVVALFFCKFVLPETKNKSLQEIEDYFKRKK 495
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307170747|gb|EFN62872.1| Sugar transporter ERD6-like 6 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/361 (39%), Positives = 219/361 (60%), Gaps = 14/361 (3%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
F++G+ GM + Y+YV+E PN R +L++ GP+ VSLGVLI+Y LG I TWQ +A
Sbjct: 66 FVSGIGSGMVNGPYLYVSETAAPNQRAWLASCGPILVSLGVLIIYILGAITTWQKAAAIS 125
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A++ A +PETP+WL +G T EA+ +L+W R D E +E+ + +
Sbjct: 126 IGPAILSLALTRMLPETPAWLISRGRTDEAKEALLWLRGPGFNVDKEYQELSDANAKRK- 184
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
+ + VWKPF IL+ FF Q+ SG+Y++++YAVN ED G +++Y+A++
Sbjct: 185 -EKKINLLRALHKPNVWKPFLILLVFFTLQQLSGIYVIVFYAVNVLEDIGLDVNEYMATV 243
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLNW 471
+ +RFFM+I+G+A F R++LA S F MA++ MGI+ ++ + F +W
Sbjct: 244 GMGVIRFFMSILGAALANTFGRKSLAFISGFGMAIAAMGIALSFRFKFP---------SW 294
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
IPL CI +V AS++G + LPWVM +EL+PL RG +GG+ S+ + IF T+KMYPDL
Sbjct: 295 IPLFCIGTHVGASIIGFVTLPWVMTSELYPLRFRGRLGGLTTSIAQVLIFATIKMYPDLK 354
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLEKGFH 591
++++ MW FS A LL +F LPET+G++L +IE F K +DS+ + K F
Sbjct: 355 AIVSVEITMWIFSAASLLGAIFSLIILPETRGRSLDDIEMKFSCKS--SDSSTNARKIFS 412
Query: 592 Q 592
Sbjct: 413 N 413
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854850|ref|XP_003702933.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 211/362 (58%), Gaps = 14/362 (3%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
FI G+ +GM++ Y+YV+E PN R +L + GPV VSLGVL++Y+LG + TWQ +A
Sbjct: 117 FIGGIGMGMANGLYLYVSEAAAPNQRAWLGSCGPVLVSLGVLMIYTLGALTTWQRAAAIS 176
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI-QQSLKVQM 351
A++ A +PE+P WL +G +EA+ SL+W R D E +E+ + + K +
Sbjct: 177 IGPAILSLALTRMIPESPGWLIARGRKEEAKESLLWLRGPGLTTDKEYEELCETNTKREE 236
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
S+ + +VWKPF +L+ FF Q+ SG+YI+L+YAVN +D G L++Y AS
Sbjct: 237 KKESL---LKALHMPSVWKPFLVLLAFFTLQQMSGIYIILFYAVNVLKDIGIDLNEYSAS 293
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLN 470
+ V +R F +I G+ F R+ALA S M +S +G++ + + +
Sbjct: 294 VGVGVIRLFASIAGAGLANSFGRKALAFVSGLGMTISAVGVALAFRFQLPSI-------- 345
Query: 471 WIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530
+ LACI +V +SM+G L LPWVM +EL+PL RG +GGI S+ L F T+KMYPDL
Sbjct: 346 -VSLACIGGHVGSSMIGYLTLPWVMTSELYPLRFRGPLGGITTSMVQLLSFATIKMYPDL 404
Query: 531 MYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLEKGF 590
L+ + +MW F A LL +F LPET+G++L +IEN F K+ S + L F
Sbjct: 405 RALVGIEWVMWIFCGASLLGAIFALTILPETRGRSLDQIENGFCSKRKSDASIQTLPSIF 464
Query: 591 HQ 592
Q
Sbjct: 465 MQ 466
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322794505|gb|EFZ17558.1| hypothetical protein SINV_10456 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 206/347 (59%), Gaps = 12/347 (3%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
F++G+ GM++ Y+YV+E P+ R +L++ GPV VSLGVL+VY+LG I TWQ +A
Sbjct: 98 FVSGIGTGMANGLYLYVSEAAAPDQRAWLTSCGPVLVSLGVLMVYTLGAITTWQKAAAIS 157
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A++ A +PETP+WLA +G T EA+ +L+W R D E +E+ ++ +
Sbjct: 158 IGPAILSLALTRMLPETPAWLASRGRTDEAKEALLWLRGPGLNVDKEFRELCETNAKRK- 216
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
+ + S VWKPF IL+ FF Q+ SG+Y++L+YAV+ E+ G +++Y AS+
Sbjct: 217 -EKRESLPRALHKSNVWKPFLILLAFFALQQLSGIYVILFYAVSVLENIGIDVNEYAASV 275
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLNW 471
+ +R F +I+G+ F R+ LA S F MA + +G++ ++ + +W
Sbjct: 276 GMGVIRLFASILGAGLANSFGRKILAFVSGFGMATAAVGVALSFRFELQ---------SW 326
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+PL CI +V SM+G L LPWVM +EL+PL RG +GG+ S+ + F +KMYPDL
Sbjct: 327 VPLLCIGMHVGTSMIGFLTLPWVMTSELYPLRFRGSLGGLTTSIAQILTFVAIKMYPDLH 386
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKN 578
++ + MW F A +L VF LPET+G++L +IE F + N
Sbjct: 387 AIVGLEFTMWIFGAAGVLGAVFALMILPETRGRSLDDIEMKFSSRSN 433
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307202951|gb|EFN82171.1| Solute carrier family 2, facilitated glucose transporter member 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 211/354 (59%), Gaps = 16/354 (4%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
FI+G+ GM++ Y+YV+E P+ R +L++ GPV VSLGVL+VY+LG I TWQ +
Sbjct: 117 FISGIGTGMANGLYLYVSEAAAPDQRAWLASCGPVLVSLGVLMVYTLGAITTWQRAAVIS 176
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI-QQSLKVQM 351
A++ A +PETP WLA +G T EA+ +L+W R D E +E+ + +LK +
Sbjct: 177 IGPAILSLALTRTLPETPVWLAARGRTDEAKKALLWLRGPGLKTDQEYQELCEANLKRKE 236
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
S+ + VWKPF IL+ FF Q+ SG+Y++L+Y VN +D G +++Y AS
Sbjct: 237 EKKSL---LRALHMPNVWKPFLILLVFFALQQLSGIYVILFYVVNVLKDIGIDVNEYAAS 293
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLN 470
+ V +R F +I+G+ R+ LA S F MA++ MG++ + + +
Sbjct: 294 VGVGVIRLFASILGAGLANNIGRKTLAFASGFGMAVAAMGVALSSRFALP---------S 344
Query: 471 WIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530
W+PL CI +V ASM+G L LPWVM +EL+PL RG +GG+ S+ + F T+K YPDL
Sbjct: 345 WVPLLCIGTHVGASMIGFLTLPWVMTSELYPLRFRGSLGGLTTSIVQIMTFATIKTYPDL 404
Query: 531 MYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTE 584
++ + MW F+ A LL +F LPET+G++L +IE F K+N DST+
Sbjct: 405 NIVVGLEFTMWIFAVAGLLGAIFALTILPETRGRSLDDIEMKFVNKQN--DSTK 456
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724199|ref|XP_003400471.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 203/345 (58%), Gaps = 12/345 (3%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
F++G+ +GM++ Y+YV+E PN R +L + GPV VSLGVL++YSLG TW+ +A
Sbjct: 117 FVSGIGMGMANGLYLYVSEAAAPNQRAWLGSCGPVLVSLGVLMIYSLGAFTTWENAAAIS 176
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A++ A +PETPSWL +G +EA+ SL+W R S D E +E+ ++ +
Sbjct: 177 IAPAILSLALTRMIPETPSWLVARGRNEEAKESLLWLRGSGLTTDREYEELCEANAKREE 236
Query: 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASI 412
G + + +VWKPF +L FF Q+ SG+YI+L+Y V+ ED G L++Y AS+
Sbjct: 237 GK--ESLLKALHMPSVWKPFLVLCAFFALQQMSGIYIILFYTVSILEDIGIDLNEYSASV 294
Query: 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLNW 471
+ +R F +I G+ F R+AL S MA+S +G++ +Y + +
Sbjct: 295 GIGVIRLFASIAGAGLANSFGRKALTFVSGLGMAISAVGVALSYRFKLPSV--------- 345
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
+ LACI +V +SM+G L LPWVM +EL+PL RG +GGI S+ + F T+KMYP+L
Sbjct: 346 VSLACIGGHVGSSMIGFLTLPWVMTSELYPLRFRGSLGGITTSIVQMLTFATIKMYPNLE 405
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576
++ + MW F+ A L F LPET+G++L EIEN F K
Sbjct: 406 PIVGIECFMWTFAVASSLGAAFALTILPETRGRSLDEIENEFSRK 450
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021871|ref|XP_003694780.1| PREDICTED: facilitated trehalose transporter Tret1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 14/357 (3%)
Query: 233 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
F+ G+ IGM++ Y+YV+E PN R +L + GPV VSLGVL++Y+LG +W+ +A
Sbjct: 139 FVNGIGIGMTNGIYLYVSETAAPNQRAWLGSCGPVLVSLGVLMIYTLGAFTSWRRAAAIS 198
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI-QQSLKVQM 351
+++ A +PETP+WL +G +EA+ SL+W R S++ D E +E+ ++++K +
Sbjct: 199 IGPSILSLALSRIIPETPAWLVARGRNEEAKESLLWLRGSSSSTDKEYEELCEENVKREK 258
Query: 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
S+ + +VWKPF +L+ FF FQ+ SG+YI+L+Y VN ED G L++Y AS
Sbjct: 259 ERESL---LKALHMPSVWKPFLVLLVFFAFQQMSGIYIILFYTVNILEDIGIELNEYSAS 315
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLN 470
+ + +R F +I G+ F R+ LA S M +S +G++ Y + +
Sbjct: 316 VGIGVIRLFASIAGAGLANSFGRKTLAFLSGLGMTISAVGVALAYRFKLPYV-------- 367
Query: 471 WIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530
+ LACI +V SMLG L LPWVM +EL+PL RG +GGI S+ + F +KMYP L
Sbjct: 368 -VSLACIGGHVGFSMLGYLTLPWVMTSELYPLRFRGPLGGITTSIVQMLTFAIIKMYPSL 426
Query: 531 MYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLE 587
++ + +W F+ A +L +F LPET+G++L EIE F K + +S+ ++
Sbjct: 427 HDMVGIESTIWIFAAASILGAIFALTILPETRGRSLDEIERGFSKKTSEPNSSTDVQ 483
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.703 | 0.875 | 0.280 | 4.6e-50 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.696 | 0.866 | 0.278 | 3.2e-49 | |
| UNIPROTKB|B4LPX5 | 911 | Tret1 "Facilitated trehalose t | 0.714 | 0.476 | 0.273 | 2.1e-48 | |
| UNIPROTKB|B4KR05 | 863 | Tret1 "Facilitated trehalose t | 0.714 | 0.502 | 0.271 | 2.7e-48 | |
| UNIPROTKB|B4QBN3 | 488 | Tret1-2 "Facilitated trehalose | 0.588 | 0.731 | 0.299 | 2.9e-48 | |
| UNIPROTKB|B4QBN2 | 857 | Tret1-1 "Facilitated trehalose | 0.714 | 0.506 | 0.275 | 2.5e-47 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.576 | 0.697 | 0.300 | 3.3e-47 | |
| UNIPROTKB|B3MG58 | 866 | Tret1 "Facilitated trehalose t | 0.714 | 0.501 | 0.266 | 2.5e-46 | |
| UNIPROTKB|B4P624 | 856 | Tret1 "Facilitated trehalose t | 0.714 | 0.507 | 0.266 | 5e-46 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.714 | 0.506 | 0.269 | 5.1e-46 |
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 123/439 (28%), Positives = 207/439 (47%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT S ++ L A +L R+
Sbjct: 43 GFVSAYTSPALVSMTDRTITS--FEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRS 100
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N++ + F+TG +G++S VY+ E P RG L
Sbjct: 101 TILATAVPFIVSSLLIACAVNVIMI-LCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTL 159
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
++G+L+ Y G + W + A + + M +PETP W +G +
Sbjct: 160 GLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEER 219
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELKE+ QS ++ + C + F + + KP I +G F
Sbjct: 220 ARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCLELFKRNNL-KPLSISLGLMFF 278
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D +++IIV + FF +G I R+ L S
Sbjct: 279 QQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVS 338
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M +++ I G + +Y D L W+PL C + + LG +PW+M+ E+ P
Sbjct: 339 DIAMIVTLSILGGF-FYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILP 397
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG +V + + F K + DL + G W F C++ + F+ F+PET
Sbjct: 398 AKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPET 457
Query: 562 QGKTLLEIENHFRGKKNMA 580
+GK+L EIE G+ M+
Sbjct: 458 RGKSLEEIERKMMGRVPMS 476
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 121/435 (27%), Positives = 205/435 (47%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT S ++ L A +L R+
Sbjct: 43 GFVSAYTSPALVSMTDRTITS--FEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRN 100
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N++ + F+TG +G++S VY+ E P RG L
Sbjct: 101 TILATAVPFIVSSLLIACAVNVIMI-LCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTL 159
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
++G+L+ Y G + W + A + + M +PETP W +G +
Sbjct: 160 GLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIIIPETPRWFVNRGQEER 219
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELK++ QS + ++ + C + F + KP I +G F
Sbjct: 220 ARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLELFKRINL-KPLSISLGLMFF 278
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D + +IIV + FF +G I R+ L S
Sbjct: 279 QQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGRKILLYVS 338
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ I G + +Y D L W+PL+C + + LG +PW+M+ E+ P
Sbjct: 339 DIAMILTLSILGGF-FYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILP 397
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG +V + + F K + DL + G W F C++ + F+ ++PET
Sbjct: 398 AKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPET 457
Query: 562 QGKTLLEIENHFRGK 576
+GK+L EIE G+
Sbjct: 458 RGKSLEEIERKMMGR 472
|
|
| UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 2.1e-48, P = 2.1e-48
Identities = 122/446 (27%), Positives = 208/446 (46%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G+ SA+ P VS+ + S ++VT Q S ++ L G A A +L R+
Sbjct: 465 GFASAYTSPALVSMTNTNLTS--FVVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRN 522
Query: 208 MAIGE-----FRYYLIPSKINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ + LI +N++ + F+ G +G++S VY+ E P RG L
Sbjct: 523 TILATAVPFIVSWLLIACAVNVIMV-LCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 581
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + A + + M +PETP W +G +
Sbjct: 582 GLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPETPRWYVSRGREER 641
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +LVW R A + ELK + +S ++ + + S + KP I +G F
Sbjct: 642 ARKALVWLRGKEADVEPELKGLMRSQADADRQATQNKMLELLKRSNL-KPLSISLGLMFF 700
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D V +IIV + F I + I R+ L S
Sbjct: 701 QQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRKVLLYVS 760
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ + G + +Y MD + W+PL+C + + LG +PW+M+ E+ P
Sbjct: 761 NVMMVLTLFVLGGF-FYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPWLMMGEILP 819
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG + + + F K + D++ + G W F C + + F+ ++PET
Sbjct: 820 AKIRGSAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFYVPET 879
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 880 QGKTLEDIERKMMGRVRRMSSVANIK 905
|
|
| UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 2.7e-48, P = 2.7e-48
Identities = 121/446 (27%), Positives = 208/446 (46%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G+ SA+ P VS+ + S ++VT Q S ++ L G A A +L R+
Sbjct: 417 GFASAYTSPALVSMTNTNLTS--FVVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRN 474
Query: 208 MAIGE-----FRYYLIPSKINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ + LI +N++ + F+ G +G++S VY+ E P RG L
Sbjct: 475 TILATAVPFIISWLLIACAVNVVMV-LCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 533
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + + + M +PETP W +G +
Sbjct: 534 GLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLIPETPRWYVSRGREER 593
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +LVW R A + ELK + +S ++ + + S + KP I +G F
Sbjct: 594 ARKALVWLRGKEADVEPELKGLMRSQADADRQATQNTMLELLKRSNL-KPLSISLGLMFF 652
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D V +IIV + F I + I R+ L S
Sbjct: 653 QQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRKILLYVS 712
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ + G + +Y MD + W+PL+C + + LG +PW+M+ E+ P
Sbjct: 713 NVAMILTLFVLGGF-FYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILP 771
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG + + + F K + D++ ++ G W F C + + F+ ++PET
Sbjct: 772 AKIRGSAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVPET 831
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 832 QGKTLEDIERKMMGRVRRMSSVANIK 857
|
|
| UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 108/361 (29%), Positives = 175/361 (48%)
Query: 217 LIPSKINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLI 275
LI +N++ + F+TG +G++S VY+ E P RG L ++G+L+
Sbjct: 115 LIACAVNVIMI-LCGRFLTGFCVGIASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILV 173
Query: 276 VYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAV 335
Y G + W + A + + M +PETP W +G + AR +L W R A
Sbjct: 174 CYVAGSFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEAD 233
Query: 336 ADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAV 395
+ ELK++ QS + + + C + F + KP I +G FQ+ SG+ V++Y V
Sbjct: 234 VEPELKDLMQSQAEADSQARRNTCLELFKRINL-KPLSISLGLMFFQQFSGINAVIFYTV 292
Query: 396 NFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTY 455
F+DAGS++D + +IIV + FF +G I R+ L S M L++ I G +
Sbjct: 293 QIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGF 352
Query: 456 EYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSL 515
+Y D L W+PL C + + LG +PW+M+ E+ P +RG +V +
Sbjct: 353 -FYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAF 411
Query: 516 GYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRG 575
+ F K + DL + G W F C++ + F+ +PET+GK+L EIE G
Sbjct: 412 NWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMG 471
Query: 576 K 576
+
Sbjct: 472 R 472
|
|
| UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 2.5e-47, P = 2.5e-47
Identities = 123/446 (27%), Positives = 205/446 (45%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT S ++ L G A A +L R+
Sbjct: 411 GFVSAYTSPALVSMTDRNITS--FEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRN 468
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N+ + F+ G +G++S VY+ E P RG L
Sbjct: 469 TILATAVPFIVSSLLIACAVNVAMV-LCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 527
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + A + + M +PETP W +G +
Sbjct: 528 GLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEER 587
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELK + +S +S + + F + KP I +G F
Sbjct: 588 ARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLELFKRINL-KPLSISLGLMFF 646
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D + +IIV + FF +G I R+ L S
Sbjct: 647 QQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYIS 706
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ I G + +Y D L W+PL C + + LG +PW+M+ E+ P
Sbjct: 707 DIAMILTLSILGGF-FYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILP 765
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG +V + + F K + DL + G W F C + + F+ ++PET
Sbjct: 766 AKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVIIYVPET 825
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 826 QGKTLEDIERKMMGRVRRMSSVANIK 851
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 107/356 (30%), Positives = 179/356 (50%)
Query: 234 ITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292
I G +G++S VY+ E P RG L VF + G+L+ ++ G + W+ +
Sbjct: 145 ICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLG 204
Query: 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA 352
A + ++ M +PETP W +G KEAR SL W R TA EL IQ+ + ++
Sbjct: 205 ACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQK-MHIESE 263
Query: 353 GSSMDHCA-QTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVAS 411
+ + + F + + KP FI +G FQ+ SG+ V++Y V F+D+GS++D+ +++
Sbjct: 264 RIATEGALIELFRKNHI-KPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDENLST 322
Query: 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471
IIV + F + + I R+ L S+ M +++ GT+ +Y EL MD W
Sbjct: 323 IIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTF-FYVKEL-MDVTAFGW 380
Query: 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531
IPL ++ V G +PW+M+ E+ P+ +RG + + + F K Y DL+
Sbjct: 381 IPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLV 440
Query: 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGKKNMADSTEHLE 587
+ G W F +A +F+ +PET+G++L EIE F G + +L+
Sbjct: 441 LHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFAGPVRRTSAIANLK 496
|
|
| UNIPROTKB|B3MG58 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 2.5e-46, P = 2.5e-46
Identities = 119/446 (26%), Positives = 207/446 (46%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT Q S ++ L G A A +L R+
Sbjct: 420 GFVSAYTSPALVSMVDRNITS--FEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRN 477
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N+ + F+ G +G++S VY+ E P RG L
Sbjct: 478 TILATAVPFIVSSLLIACAVNVAMV-LAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 536
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + A + + M +PETP W +G +
Sbjct: 537 GLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLVLMFLIPETPRWFVSRGREER 596
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELK + +S + + + S +KP I +G F
Sbjct: 597 ARKALSWLRGKEADVEPELKGLMRSQADADRQGTQNTMLELLKRSN-FKPLSISLGLMFF 655
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V+ F+DAGS++D V +IIV + F I + I R+ L S
Sbjct: 656 QQLSGINAVIFYTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVS 715
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M +++ + G + +Y D L W+PL+C + + LG +PW+M+ E+ P
Sbjct: 716 NIAMIITLFVLGGF-FYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILP 774
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG + + + F K + D++ ++ G W F C + + F+ ++PET
Sbjct: 775 AKIRGSAASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPET 834
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 835 QGKTLEDIERKMMGRVRRMSSVANIK 860
|
|
| UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 5.0e-46, P = 5.0e-46
Identities = 119/446 (26%), Positives = 203/446 (45%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT S ++ L G A ++ R+
Sbjct: 410 GFVSAYTSPALVSMSDPNITS--FTVTKDAGSWVGGIMPLAGLVGGVAGGPLIEYMGRRN 467
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N+ + F+ G +G++S VY+ E P RG L
Sbjct: 468 TILATAVPFIVSSLLIACAVNVAMV-LCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 526
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + A + + M +PETP W +G +
Sbjct: 527 GLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWYVSRGREER 586
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELK + +S ++ + + + + KP I +G F
Sbjct: 587 ARKALTWLRGKEADVEPELKGLMRSQADADRQATQNTMLELLKRNNL-KPLSISLGLMFF 645
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D V +IIV + F IG I R+ L S
Sbjct: 646 QQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAGRKILLYAS 705
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ + G + +Y D L W+PL C + + +G +PW+M+ E+ P
Sbjct: 706 DIAMVLTLFVLGGF-FYCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPWLMMGEILP 764
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG + S + F K + DL+ L G W F C + + F+ ++PET
Sbjct: 765 AKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVILYVPET 824
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 825 QGKTLEDIERKMMGRVRRMSSVANIK 850
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 5.1e-46, P = 5.1e-46
Identities = 120/446 (26%), Positives = 203/446 (45%)
Query: 149 GYLSAF-GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
G++SA+ P VS+ + S + VT S ++ L G A A +L R+
Sbjct: 411 GFVSAYTSPALVSMTDRNITS--FEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRN 468
Query: 208 MAIGEFRYYLIPS-----KINILQYHIHTWFITGMAIGMSSACY-VYVAEICLPNDRGYL 261
+ +++ S +N+ + F+ G +G++S VY+ E P RG L
Sbjct: 469 TILATAVPFIVSSLLIACAVNVAMV-LCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTL 527
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
F ++G+L+ + G + W + A + + M +PETP W +G +
Sbjct: 528 GLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEER 587
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
AR +L W R A + ELK + +S +S + + + + KP I +G F
Sbjct: 588 ARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLELLKLNNL-KPLSISLGLMFF 646
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
Q+ SG+ V++Y V F+DAGS++D + +IIV + F IG I R+ L S
Sbjct: 647 QQFSGINAVIFYTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVS 706
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
M L++ + G + +Y D L W+PL C + + LG +PW+M+ E+ P
Sbjct: 707 DIAMVLTLFVLGGF-FYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILP 765
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
+RG + + + F K + DL + G W F C + + F+ ++PET
Sbjct: 766 AKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPET 825
Query: 562 QGKTLLEIENHFRGKKNMADSTEHLE 587
QGKTL +IE G+ S +++
Sbjct: 826 QGKTLEDIERKMMGRVRRMSSVANIK 851
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 607 | |||
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-35 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-31 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-31 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-16 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-15 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 7e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-09 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-08 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-08 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 0.002 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.003 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-35
Identities = 93/351 (26%), Positives = 170/351 (48%), Gaps = 18/351 (5%)
Query: 233 FITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY-------SLGYIVT 284
+ G+ +G++SA +Y++EI RG L++ + ++ G+L+ Y SL +
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194
Query: 285 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE-- 342
W+ + A + F + +PE+P WL +G +EAR SL R ++ L E
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELE 254
Query: 343 ---IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE 399
I++S++ + S + T F+ + FQ+ +G+ ++YY+ FE
Sbjct: 255 LIDIKRSIEKRSVQPSW-GSLFSSTRRIRR-RLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 400 DAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYY 458
+AG S D ++ SIIV + F + + F RR L A MA+ + + G
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI--LG 370
Query: 459 FSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYL 518
S ++ + + + IL + +G +PWV+++E+FPLS+R I + +L
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 519 FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEI 569
F ++P ++ + +GG+ F +L ++F+ FLPET+G+TL EI
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-31
Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 20/348 (5%)
Query: 233 FITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI-------VT 284
I G+ +G S +Y++EI RG L + + ++ G+L+ +G
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 285 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344
W+ V A++ + +PE+P WL +G +EAR L R + D E++E +
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK-LRGVSDVDQEIQEEK 227
Query: 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSS 404
SL+ + + + F V + + + +FQ+ +G+ + YY+ FE G S
Sbjct: 228 DSLE-RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286
Query: 405 LDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSM-GISGTYEYYFSELS 463
D + +IIV + F I + F RR L A MA+ +
Sbjct: 287 -DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKG 345
Query: 464 MDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTT 523
+ + IL + LG +PWV+++ELFPL VR I + +L F
Sbjct: 346 A-----GIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLI 400
Query: 524 VKMYPDLMYLLNMGGMMWAFSCACLLAM-VFIQAFLPETQGKTLLEIE 570
++P + +GG ++ L+ +F+ F+PET+G+TL EI+
Sbjct: 401 GFLFPIITG--AIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-31
Identities = 96/366 (26%), Positives = 164/366 (44%), Gaps = 40/366 (10%)
Query: 234 ITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT-------- 284
I G+ +G++S +Y+AEI + RG L +F + G L+VY + Y +
Sbjct: 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188
Query: 285 ----WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAEL 340
W+Y A+ A+ AL+ ++ VPETP +L +G ++A L +A L
Sbjct: 189 NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIM-GNTLATQAL 247
Query: 341 KEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFL--FQEASGMYIVLYYAVNFF 398
+EI+ SL + I+IG L FQ+ G+ +VLYYA F
Sbjct: 248 QEIKHSLDHGRK-----TGGKLLMFGV----GVIVIGVMLSVFQQFVGINVVLYYAPEIF 298
Query: 399 EDAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEY 457
+ G+S D + +IIV + ++ + F R+ L A MA+ M GT +
Sbjct: 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT-AF 357
Query: 458 YFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGY 517
Y + + L +L V A + + WV+++E+FP ++RG I + +
Sbjct: 358 YTQAPGI-------VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 410
Query: 518 LFIF----TTVKMYPDLMYLLNMGGMM--WAFSCACLLAMVFIQAFLPETQGKTLLEIEN 571
+ + T M + + + W + C +LA +F+ F+PET+GKTL E+E
Sbjct: 411 IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
Query: 572 HFRGKK 577
+ +
Sbjct: 471 LWEPET 476
|
Length = 479 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG--FTL 117
S+ + I S+ + +GSLFAG D GRK ++ + + F+IG + +KG F +
Sbjct: 44 STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103
Query: 118 LCVGRFITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI---- 172
L VGR I G+ +G S +Y++EI RG L + + ++ G+L+ +G
Sbjct: 104 LIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKY 163
Query: 173 ---VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
W+ V A++ + +PE+P WL +G
Sbjct: 164 SNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKG 201
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-15
Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 11/154 (7%)
Query: 65 SWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT---LLCVG 121
+ S+ ++ +G+LFAG D GRK ++ + A+ F+IG ++ ++ +L VG
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY-------SLGYIV 173
R + G+ +G++SA +Y++EI RG L++ + ++ G+L+ Y SL +
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 174 TWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
W+ + A + F + +PE+P WL +G
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG 227
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 77/348 (22%), Positives = 125/348 (35%), Gaps = 43/348 (12%)
Query: 233 FITGMAI-GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSA 290
+ GM I G+ V E R + VF SLG++++ + Y + W++
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 291 ACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350
A ++ + F VPE+P WL QG +EA L +R + +L SL ++
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL---QRIAKINGKKLPAEVLSLSLE 304
Query: 351 MAGSS---MDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDD 407
SS F + K L+ F A Y ++ N +
Sbjct: 305 KDLSSSKKQYSFLDLFRTPNLRKTTLCLM-MLWFTTAFSYYGLVLDLGNLG------GNI 357
Query: 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDR 467
Y+ I + +I I RR S +++ + D
Sbjct: 358 YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL--------FVPVDL 409
Query: 468 PLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCS----LGYL---FI 520
LA + + Q+ ++ AEL+P VR +G VCS +G + F+
Sbjct: 410 YFLRTALAVL-GKFGITSA--FQMVYLYTAELYPTVVRN-LGVGVCSTMARVGSIISPFL 465
Query: 521 FTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLE 568
+ + L +L F LLA + FLPET+G L E
Sbjct: 466 VYLGEKWLFLPLVL--------FGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+S+ A I S + +GSL AG D GR+ + L + F +G ++ + L
Sbjct: 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL 89
Query: 118 LCVGRFITGMAIGM-SSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT-- 174
L VGRF+ G+ G A +AE P +RG LG L+ LG ++
Sbjct: 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149
Query: 175 --WQYTSAACAVVALVGFAAMHAVP 197
W++ A++ L+ + +
Sbjct: 150 LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 77 VGSLFAGIFMDLLGRKTTVQLTAIPFIIG-----------WTIITVSKGFTLLCVG-RFI 124
+G G + GR+ ++++ A+ F I +I + G+ V R I
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 125 TGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--------- 174
G+ +G++S +Y+AEI + RG L +F + G L+VY + Y +
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 175 ---WQYTSAACAVVALVGFAAMHAVPETPSWLARQGM 208
W+Y A+ A+ AL+ ++ VPETP +L +G
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK 226
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 77 VGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAI-GMSSAC 135
+GS G D GRK + L+ + + + S +T+ V R + GM I G+
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQA 201
Query: 136 YVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAAMH 194
V E R + VF SLG++++ + Y + W++ A ++ + F
Sbjct: 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSW 261
Query: 195 AVPETPSWLARQG 207
VPE+P WL QG
Sbjct: 262 FVPESPRWLISQG 274
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLL 118
IS + + + + + AG D GR+ + + + F +G ++ + LL
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 119 CVGRFITGMAIG-MSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--- 174
V R + G+ G + A +A+ P +RG LG + LG ++
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 175 -WQYTSAACAVVALVGFAAM 193
W+ A++AL+
Sbjct: 149 GWRAAFLILAILALLAAVLA 168
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 29/200 (14%)
Query: 69 SLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT--------LLCV 120
+ G ++ P+G++ G F D +GRK T+ +T + IG +I + + LL +
Sbjct: 42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL 101
Query: 121 GRFITGMAIGM-SSACYVYVAEICLPNDRGYLSAF----GPVFVSLGVLIVYSLGYIVT- 174
R I G ++G +Y+AE P RG+ +F PV + L L V L Y++
Sbjct: 102 ARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161
Query: 175 -------WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQY 227
W+ AV+ L+G + ETP + Q + I +
Sbjct: 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------KHKKKRGPIAET 213
Query: 228 HIHTWFITGMAIGMSSACYV 247
+ +G+ A
Sbjct: 214 LTKHRKPFLLGLGLVIATTT 233
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 59/294 (20%), Positives = 101/294 (34%), Gaps = 46/294 (15%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+S A + + + +G+ + L R+ + FI+ + ++ F +
Sbjct: 44 GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV 103
Query: 118 LCVGRFITGMAIGMS-SACYVYVAEICLPNDRGYLSAFGPVFVS------LGVLIVYSLG 170
L + R + G+A G+ S A + P RG A VF LGV + LG
Sbjct: 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVFTGLTLATVLGVPLGTFLG 161
Query: 171 YIVTWQYTSAACAVVALVGFAAM--------------HAVPETPSWLARQG--------- 207
+ W+ T A AV+AL+ + + L R G
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATF 221
Query: 208 -MAIGEFRYYLIPSKINILQYHIHTWFITG--MAIGMSSACYVYVAEICLPNDRGYLSAF 264
G F Y ++ +A G++ + G L+
Sbjct: 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG--------GRLADR 273
Query: 265 GP---VFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLAR 315
GP + +L +L + L T + A A++ L GFA A+ + LAR
Sbjct: 274 GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR 327
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 16/192 (8%)
Query: 366 SAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAG--SSLDDYVASIIVAGLRFFMAI 423
+L+ F + G Y +L Y + ++ S+ + + + A+
Sbjct: 170 LLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL 229
Query: 424 IGSACIQMFSRR-ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482
+G RR L AL + + + L L +
Sbjct: 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLG 276
Query: 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542
+ + +EL P RG G+ + G L + L+ GG+
Sbjct: 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 543 FSCACLLAMVFI 554
+ LLA + +
Sbjct: 337 LAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+ ++ S G+I G+LF G D +GR+ + + + F + + ++ T
Sbjct: 48 GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQ 107
Query: 118 LCVGRFITGMAIG-MSSACYVYVAEICLPNDR----GYLSAFGPVFVSLGVLIVYSLGYI 172
L + RF+ G+ +G + V+E R G + P+ ++G + L +
Sbjct: 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167
Query: 173 VTWQYTSAACAVVALVGFAAMH-AVPETPSWLARQG 207
W+ + L+ + +PE+ +L +
Sbjct: 168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 57 ISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116
+ ++ + +++A+ I P G G+ D GRK + + + + +G + ++ G
Sbjct: 48 LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVI 107
Query: 117 LLCVGRFITGMAIGMSSAC-YVYVAEICLPNDRGYLSAF 154
+L + RFI GM + AC Y E + + SAF
Sbjct: 108 MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF 146
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| KOG0253|consensus | 528 | 100.0 | ||
| KOG0255|consensus | 521 | 100.0 | ||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.98 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| KOG2532|consensus | 466 | 99.95 | ||
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| KOG1330|consensus | 493 | 99.95 | ||
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| KOG2533|consensus | 495 | 99.94 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.91 | |
| KOG2615|consensus | 451 | 99.91 | ||
| KOG2504|consensus | 509 | 99.91 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.88 | |
| KOG3764|consensus | 464 | 99.87 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.83 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.8 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.8 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.77 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.76 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.7 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.7 | |
| KOG4686|consensus | 459 | 99.69 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.68 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.64 | |
| KOG2563|consensus | 480 | 99.63 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.61 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.57 | |
| KOG3626|consensus | 735 | 99.56 | ||
| KOG2325|consensus | 488 | 99.53 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.45 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.37 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.35 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.3 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.28 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.27 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.26 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.26 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.25 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.23 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.22 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.22 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.22 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.22 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.21 | |
| KOG2816|consensus | 463 | 99.21 | ||
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.2 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.2 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.2 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.18 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.18 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.18 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.17 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.17 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.17 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.16 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.15 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.15 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.12 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.11 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.11 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.1 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.1 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.1 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.08 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.08 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.07 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.06 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.05 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.05 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.04 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.04 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.04 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.03 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.03 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.03 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.02 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.02 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.02 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.01 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.99 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.99 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.98 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.97 | |
| KOG1330|consensus | 493 | 98.96 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.93 | |
| KOG3762|consensus | 618 | 98.92 | ||
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.87 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.84 | |
| KOG2615|consensus | 451 | 98.84 | ||
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.83 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.83 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.83 | |
| KOG3098|consensus | 461 | 98.82 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.82 | |
| KOG0569|consensus | 485 | 98.81 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.81 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.8 | |
| KOG3764|consensus | 464 | 98.79 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.78 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.78 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.76 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.75 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.74 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.72 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.72 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.71 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.68 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.67 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.66 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.65 | |
| KOG0637|consensus | 498 | 98.63 | ||
| KOG0255|consensus | 521 | 98.6 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.59 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.58 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.56 | |
| KOG4332|consensus | 454 | 98.54 | ||
| KOG0254|consensus | 513 | 98.53 | ||
| KOG2504|consensus | 509 | 98.52 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.47 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.42 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.4 | |
| KOG2532|consensus | 466 | 98.38 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.36 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.34 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.33 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.32 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.31 | |
| KOG0253|consensus | 528 | 98.28 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.26 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.25 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.19 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.19 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.18 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.14 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.11 | |
| KOG2533|consensus | 495 | 98.07 | ||
| KOG2816|consensus | 463 | 98.06 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.04 | |
| KOG3574|consensus | 510 | 98.02 | ||
| KOG0252|consensus | 538 | 98.01 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.97 | |
| KOG3810|consensus | 433 | 97.97 | ||
| PRK11462 | 460 | putative transporter; Provisional | 97.93 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.93 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.93 | |
| KOG4686|consensus | 459 | 97.93 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.89 | |
| KOG2325|consensus | 488 | 97.82 | ||
| KOG3762|consensus | 618 | 97.79 | ||
| KOG1237|consensus | 571 | 97.62 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.39 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.36 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.32 | |
| KOG2563|consensus | 480 | 97.18 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.7 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.64 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.36 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.17 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.81 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.67 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.65 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.6 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.58 | |
| KOG3626|consensus | 735 | 95.4 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.81 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.73 | |
| KOG0637|consensus | 498 | 94.53 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 92.74 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.61 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.51 | |
| KOG1479|consensus | 406 | 92.26 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.23 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.8 | |
| KOG1479|consensus | 406 | 91.18 | ||
| KOG3098|consensus | 461 | 89.22 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 89.15 | |
| KOG1237|consensus | 571 | 81.83 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.66 | |
| KOG3880|consensus | 409 | 81.36 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=361.63 Aligned_cols=405 Identities=24% Similarity=0.398 Sum_probs=344.1
Q ss_pred hhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc---cchhHHHHHHHHHhhhhhhHhh-hHhHH
Q psy10231 64 ASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS---KGFTLLCVGRFITGMAIGMSSA-CYVYV 139 (607)
Q Consensus 64 ~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a---~~~~~l~~~R~l~G~g~g~~~~-~~~~i 139 (607)
.+.+.+++.+|.++|+++.|.++||+|||..++++.++..++.++..++ +++.+++++|++.|+..|.... .+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999998888877765 7899999999999999999999 99999
Q ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccc
Q psy10231 140 AEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIP 219 (607)
Q Consensus 140 ~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~ 219 (607)
.|..|++.||....+.+.+..+|.+++..++.--
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~---------------------------------------------- 175 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPS---------------------------------------------- 175 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHH----------------------------------------------
Confidence 9999999999999999999999999986665321
Q ss_pred cchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHH
Q psy10231 220 SKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVG 299 (607)
Q Consensus 220 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 299 (607)
++|....|++.+....+++++.
T Consensus 176 ----------------------------------------------------------ilGt~~~W~~l~~~~~i~~~~~ 197 (485)
T KOG0569|consen 176 ----------------------------------------------------------LLGTEDLWPYLLAFPLIPALLQ 197 (485)
T ss_pred ----------------------------------------------------------hcCCCcchHHHHHHHHHHHHHH
Confidence 1222233444444445555555
Q ss_pred HhhhccccCChHHHHH-hCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHH
Q psy10231 300 FAAMHAVPETPSWLAR-QGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGF 378 (607)
Q Consensus 300 ~~~~~~~~esp~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (607)
++..+++||||||+.. +++.++|++.++++++.++++++..++.++..+++.++.+..+.++++++++.++...+.+.+
T Consensus 198 l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v 277 (485)
T KOG0569|consen 198 LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVV 277 (485)
T ss_pred HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHH
Confidence 5588999999999988 799999999999999877554444333333333334445778999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhh
Q psy10231 379 FLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEY 457 (607)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~ 457 (607)
...+++++.+...+|...++++.|++.+ +.......+...++.++++.++.||+|||++++.+..++.+..+++.....
T Consensus 278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~ 357 (485)
T KOG0569|consen 278 SFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALF 357 (485)
T ss_pred HHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999655 567888889999999999999999999999999999999988888777665
Q ss_pred hhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhH
Q psy10231 458 YFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMG 537 (607)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~ 537 (607)
...... ....+..+.+.+++...+..|.+|++|.+.+|++|++.|+.++++...+.++..++....++.+.+..|.
T Consensus 358 l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~- 433 (485)
T KOG0569|consen 358 LSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP- 433 (485)
T ss_pred HHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 544311 2233455778888999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHhhcc
Q psy10231 538 GMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENHFRGK 576 (607)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (607)
..|..+.+.+++..++.++++||||+|+.+|+.++.+++
T Consensus 434 ~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 588899999999999999999999999999988887765
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=347.23 Aligned_cols=433 Identities=28% Similarity=0.466 Sum_probs=353.6
Q ss_pred hhcccc--ccccccccccccCCCcccccCc----cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHH
Q psy10231 34 HCNNLT--HAIPSILIPQLQKPSSIISISS----DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWT 107 (607)
Q Consensus 34 ~~~~~~--~~~~~~~~p~l~~~~~~~~~s~----~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 107 (607)
+..+.+ .+..+...+.+.+......... .+.+|+.+++.++..+++++.|+++|++|||+.++++.+++.++++
T Consensus 55 ~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~i 134 (513)
T KOG0254|consen 55 LLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAI 134 (513)
T ss_pred HHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455665 5666777777766432222222 3459999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHH
Q psy10231 108 IITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAA 181 (607)
Q Consensus 108 ~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~ 181 (607)
++++++|+++++++|+++|+|.|.... .+.|++|..|++.||...+..+....+|..++..++... +||..+.+
T Consensus 135 i~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 135 IIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred HHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999997777766 47766666
Q ss_pred hHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 182 CAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
..+++++..+
T Consensus 215 ~~i~~~~~~~---------------------------------------------------------------------- 224 (513)
T KOG0254|consen 215 ALIPAVILAL---------------------------------------------------------------------- 224 (513)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 6666666555
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhc-CchhhhhHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRR-STAVADAEL 340 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 340 (607)
..+++||||+|+.++++.++++..++++++ .+.+.+.+.
T Consensus 225 ----------------------------------------~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~ 264 (513)
T KOG0254|consen 225 ----------------------------------------GMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVEL 264 (513)
T ss_pred ----------------------------------------HHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHH
Confidence 577788999999999999999999999988 445555566
Q ss_pred HHHHHHHHHhhcCCccc-hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy10231 341 KEIQQSLKVQMAGSSMD-HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRF 419 (607)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 419 (607)
++++.....+....... .+.++++ +..+++.++.+.+..++++++.+...+|.+.+++..|.+.+......+.++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~ 343 (513)
T KOG0254|consen 265 ELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNF 343 (513)
T ss_pred HHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 66652222222222222 3455554 778888999999999999999999999999999998886554677778888899
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++..++.++.||+|||++++.+...+.++.++++.................+..+...+++...+..++.+++|.+.+|.
T Consensus 344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEi 423 (513)
T KOG0254|consen 344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEI 423 (513)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhcc
Confidence 99999999999999999999999999999998887655543211123345677788888899999999999999999999
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHH-HhhhcccCCCCCCHHHHHHHhhccC
Q psy10231 500 FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMV-FIQAFLPETQGKTLLEIENHFRGKK 577 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (607)
+|.+.|+.+.++.....++...+....+....+..+....|..+++++.+..+ ++++++||||++++||+++..+++.
T Consensus 424 fp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 424 FPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred CcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 99999999999999999999998877777777665534577777777777777 7888999999999999988776554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=345.36 Aligned_cols=415 Identities=16% Similarity=0.220 Sum_probs=308.9
Q ss_pred hccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccc
Q psy10231 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG 114 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~ 114 (607)
.++++....+.++|.+.+ +++++..+.+++.++++++.+++++++|+++||+|||++++++++++++++++++++++
T Consensus 178 ~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s 254 (742)
T TIGR01299 178 ADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG 254 (742)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666677888899888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVG 189 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~ 189 (607)
++.++++|+++|++.|+..+ ..+++.|++|+++|++.++++..++.+|.++++.++..+ +|+.....
T Consensus 255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~-------- 326 (742)
T TIGR01299 255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS-------- 326 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc--------
Confidence 99999999999999999999 999999999999999999999999999999988777543 23221000
Q ss_pred HHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHH
Q psy10231 190 FAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFV 269 (607)
Q Consensus 190 ~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~ 269 (607)
T Consensus 327 -------------------------------------------------------------------------------- 326 (742)
T TIGR01299 327 -------------------------------------------------------------------------------- 326 (742)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhh----hhH--HHHH
Q psy10231 270 SLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVA----DAE--LKEI 343 (607)
Q Consensus 270 ~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~--~~~~ 343 (607)
.-...+||+.+.+.+++.++.++..+++||||+|+..+++.+++.+.++++++.+... .+. .+.+
T Consensus 327 ---------~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~ 397 (742)
T TIGR01299 327 ---------AYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHI 397 (742)
T ss_pred ---------ccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHH
Confidence 0012468888888888888888888899999999999999999999999887665321 111 1111
Q ss_pred HHHHHH------hhcCC----------------ccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q psy10231 344 QQSLKV------QMAGS----------------SMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA 401 (607)
Q Consensus 344 ~~~~~~------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (607)
+..... ++... .+.+++++| +++++++.+....+ +++...+++.+..|.|.+++..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf-~~~~~~~tl~l~~~-wf~~~~~yygl~~w~P~~~~~~ 475 (742)
T TIGR01299 398 KTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCF-NPEVREITIKLMGV-WFTLSFGYYGLSVWFPDMIKHL 475 (742)
T ss_pred HHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHc-CccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00000 011345555 44555555555444 4556667899999999875431
Q ss_pred ------------------------------------------CC---------C--------------------------
Q psy10231 402 ------------------------------------------GS---------S-------------------------- 404 (607)
Q Consensus 402 ------------------------------------------g~---------~-------------------------- 404 (607)
|+ +
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 555 (742)
T TIGR01299 476 QADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTL 555 (742)
T ss_pred HHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhh
Confidence 00 0
Q ss_pred ----------------------------------c-----chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHH
Q psy10231 405 ----------------------------------L-----DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFM 445 (607)
Q Consensus 405 ----------------------------------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~ 445 (607)
. ..+....+.+++.+++.+++++++||+|||+++..+.++.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~ls 635 (742)
T TIGR01299 556 FENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLS 635 (742)
T ss_pred ccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0 0123355666888999999999999999999999888888
Q ss_pred HHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhh
Q psy10231 446 ALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVK 525 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~ 525 (607)
+++++++++. ......++..+++.++ ..+..+..+++++|++|++.|++++|+.+..+++|++++|.
T Consensus 636 ai~~ll~~~~------------~s~~~ll~~~~l~g~~-~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~ 702 (742)
T TIGR01299 636 CISCFFLSFG------------NSESAMIALLCLFGGL-SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL 702 (742)
T ss_pred HHHHHHHHHH------------ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766542 1112222222333332 23345667789999999999999999999999999999999
Q ss_pred hcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCH
Q psy10231 526 MYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTL 566 (607)
Q Consensus 526 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (607)
+.+.+.+. +...++++.+++.++++++.+ ++|||+++.+
T Consensus 703 i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 703 IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 99988764 455577777777777666655 5599988653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=343.25 Aligned_cols=439 Identities=19% Similarity=0.173 Sum_probs=302.2
Q ss_pred hhhccccccccccccccccCC--CcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKP--SSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~--~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
.+.+++|.+..+.+.|.+..+ ..+.+.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.+++.+++++++
T Consensus 25 ~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~ 104 (502)
T TIGR00887 25 FFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG 104 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 357888988888888877652 112345667889999999999999999999999999999999999999999999999
Q ss_pred hccc------hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q psy10231 111 VSKG------FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACA 183 (607)
Q Consensus 111 ~a~~------~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f~~~~ 183 (607)
++++ ++.++++|+++|++.|...+ ..+++.|++|+++|++++++......+|.++++.++..+.+....
T Consensus 105 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~---- 180 (502)
T TIGR00887 105 LSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH---- 180 (502)
T ss_pred HccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9876 78999999999999999999 999999999999999999999999999999988776532100000
Q ss_pred HHHHHHHHHHhcCCCChhhH-hhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccccc
Q psy10231 184 VVALVGFAAMHAVPETPSWL-ARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLS 262 (607)
Q Consensus 184 ~~~~~~~~~~~~~pes~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~ 262 (607)
..+.+.+. +...++
T Consensus 181 ------------~~~~~~~~~~~~~~~----------------------------------------------------- 195 (502)
T TIGR00887 181 ------------SLEAAADEASCTGSC----------------------------------------------------- 195 (502)
T ss_pred ------------ccccccccccccccc-----------------------------------------------------
Confidence 00000000 000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChH-HHHHHHHHHhcCchh-hhhHH
Q psy10231 263 AFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTK-EARNSLVWFRRSTAV-ADAEL 340 (607)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~-~~~~~l~~~~~~~~~-~~~~~ 340 (607)
......+||+.+.+..+++++.++..+++||||+|+..+++.+ ++++.+++..+.+.+ ..++.
T Consensus 196 ---------------~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 260 (502)
T TIGR00887 196 ---------------VPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEV 260 (502)
T ss_pred ---------------cchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccc
Confidence 0001136888888888888887788889999999998887764 466666655443211 11111
Q ss_pred HHHHHHHHHhhcCCccchhhhhhccC---cchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hH--------
Q psy10231 341 KEIQQSLKVQMAGSSMDHCAQTFTNS---AVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DY-------- 408 (607)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-------- 408 (607)
++.++ ++ +....+++++++++ +.++ ..+......+.....++....|.|.++++.|++.. ..
T Consensus 261 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~ 334 (502)
T TIGR00887 261 EKAST----AV-EVPKASWSDFFTHFFKWRHGK-HLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELY 334 (502)
T ss_pred cchhc----cc-cchhhhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHH
Confidence 11111 11 11123567777643 2222 22222233333333456667778998887776432 10
Q ss_pred ----HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHH
Q psy10231 409 ----VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCAS 484 (607)
Q Consensus 409 ----~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (607)
....+..++.+++.++.++++||+|||++++.+..+..+++.+++..... ..........+.+...+
T Consensus 335 ~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~ 405 (502)
T TIGR00887 335 KTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH---------LSTHGFLAIYVLAQFFA 405 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHHH
Confidence 02233345566788899999999999999888877777666655542110 01111222222223334
Q ss_pred HhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh----------hhhHHHHHHHHHHHHHHHHHh
Q psy10231 485 MLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL----------LNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 485 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~ 554 (607)
..+..+..+.+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+. .++...+++++++++++.++
T Consensus 406 ~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~- 484 (502)
T TIGR00887 406 NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF- 484 (502)
T ss_pred hcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-
Confidence 4556677788899999999999999999999999999999999998874 33455778888888777665
Q ss_pred hhcccCCCCCCHHHHHH
Q psy10231 555 QAFLPETQGKTLLEIEN 571 (607)
Q Consensus 555 ~~~~~~~~~~~~~~~~~ 571 (607)
.+++|||+++++||+++
T Consensus 485 ~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 485 TLLIPETKGKSLEELSG 501 (502)
T ss_pred heEeccCCCCCHHhhhC
Confidence 46779999999887643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=329.19 Aligned_cols=417 Identities=26% Similarity=0.388 Sum_probs=304.5
Q ss_pred hhccccccccccccccccCCC-----cccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPS-----SIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTI 108 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~-----~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~ 108 (607)
+.+++|.++.++..|.+++.. .+++.++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~ 101 (479)
T PRK10077 22 LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALG 101 (479)
T ss_pred HhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 567889998888888877721 133888999999999999999999999999999999999999999999999988
Q ss_pred HHhc------------cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh--
Q psy10231 109 ITVS------------KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-- 173 (607)
Q Consensus 109 ~a~a------------~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-- 173 (607)
++++ ++++.++++|+++|++.|...+ ..+++.|++|+++|++++++.+.+..+|.++++.++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 181 (479)
T PRK10077 102 SAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIAR 181 (479)
T ss_pred HHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8863 2256788999999999999999 999999999999999999999999999999887765432
Q ss_pred ----------hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhh
Q psy10231 174 ----------TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSS 243 (607)
Q Consensus 174 ----------~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 243 (607)
+||+.|++.+++.++..+
T Consensus 182 ~~~~~~~~~~gWr~~f~~~~~~~~~~~~---------------------------------------------------- 209 (479)
T PRK10077 182 SGDASWLNTDGWRYMFASEAIPALLFLM---------------------------------------------------- 209 (479)
T ss_pred cCcccccccCChHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 678777776666655444
Q ss_pred hHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHH
Q psy10231 244 ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEAR 323 (607)
Q Consensus 244 ~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~ 323 (607)
..+++||+|+|+..+++.++++
T Consensus 210 ----------------------------------------------------------~~~~l~~s~~~l~~~~~~~~~~ 231 (479)
T PRK10077 210 ----------------------------------------------------------LLYFVPETPRYLMSRGKQEQAE 231 (479)
T ss_pred ----------------------------------------------------------HHHcCCCCcHHHHHcCCHHHHH
Confidence 4455677777776666666666
Q ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC
Q psy10231 324 NSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGS 403 (607)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 403 (607)
...++..+.++ .++..++.++..++++.. ....+.. ........+....+.+..+.+...+|.|.+.++.|.
T Consensus 232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~ 303 (479)
T PRK10077 232 GILRKIMGNTL-ATQALQEIKHSLDHGRKT-----GGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303 (479)
T ss_pred HHHHHHcCChh-HHHHHHHHHHHHHHhhhh-----hhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC
Confidence 55555443321 111222222211111000 0111110 011222233334445555666777888998888777
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHH
Q psy10231 404 SLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482 (607)
Q Consensus 404 ~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (607)
+.. ........++..+++.++.++++||+|||+.++.+.+..+++.+.+...... +..........+.+..
T Consensus 304 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--------~~~~~~~~~~~~~~~~ 375 (479)
T PRK10077 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--------QAPGIVALLSMLFYVA 375 (479)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHH
Confidence 544 4555666778889999999999999999999999988888877766542211 1222233334444455
Q ss_pred HHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH------HhhhhHHHHHHHHHHHHHHHHHhhh
Q psy10231 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM------YLLNMGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~~ 556 (607)
++.....+..+.++.|.+|++.|+++.|+.+.+++++.++++.+.+.+. +..++...|+++++++++++++.++
T Consensus 376 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 376 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 5555555777899999999999999999999999999999987776554 4567777888888888888888888
Q ss_pred cccCCCCCCHHHHHHHhhcc
Q psy10231 557 FLPETQGKTLLEIENHFRGK 576 (607)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~ 576 (607)
+.||+|+++.+|.++..++.
T Consensus 456 ~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 456 FVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred ccccCCCCCHHHHHHHHhhc
Confidence 88999999998877765443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=324.76 Aligned_cols=388 Identities=20% Similarity=0.257 Sum_probs=289.5
Q ss_pred cccccccCCCcccccC---ccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 45 ILIPQLQKPSSIISIS---SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s---~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
...|.+.+ |++++ +.+.+++.+++.++..+++++.|+++||+|||++++++.++..++++++++++|++.++++
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 45677777 99998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHHHhcCCCC
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAAMHAVPET 199 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~~~~~~~~~~~pes 199 (607)
|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-------- 258 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFL-------- 258 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------
Confidence 9999999999999 999999999999999999999999999999999998877 899999988887766655
Q ss_pred hhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHH
Q psy10231 200 PSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSL 279 (607)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 279 (607)
T Consensus 259 -------------------------------------------------------------------------------- 258 (505)
T TIGR00898 259 -------------------------------------------------------------------------------- 258 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhh-HHHHHHHHHHHhhcCCccch
Q psy10231 280 GYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADA-ELKEIQQSLKVQMAGSSMDH 358 (607)
Q Consensus 280 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 358 (607)
..+++||+|+|+..+++.+++.+.+++..+.++.... +..+.+.+ +++++.....+
T Consensus 259 ----------------------~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 315 (505)
T TIGR00898 259 ----------------------LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE-KDLSSSKKQYS 315 (505)
T ss_pred ----------------------HHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh-hhhhhccCCCc
Confidence 4466788888888888888888777776554432211 11111101 11111122357
Q ss_pred hhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhcccCCchh
Q psy10231 359 CAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVN-FFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRAL 437 (607)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 437 (607)
+++++++++.++..+......+. ....+|... +..+.+ .+......+.++..+++.++.+++.||+|||+.
T Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~ 387 (505)
T TIGR00898 316 FLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDLGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYT 387 (505)
T ss_pred HHHHhCChHHHHHHHHHHHHHHH------HHHHHHHHhccccccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 78899988777655444333221 112222222 222222 234555666778888999999999999999999
Q ss_pred HHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHH
Q psy10231 438 ATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGY 517 (607)
Q Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 517 (607)
+..+.++.+++.+++.+. + ....+......++.. ++.....+..+.+..|.+|++.|+++.|+.+++++
T Consensus 388 ~~~~~~~~~~~~l~~~~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 456 (505)
T TIGR00898 388 MAASLLLAGVALLLLLFV---P-------VDLYFLRTALAVLGK-FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR 456 (505)
T ss_pred HHHHHHHHHHHHHHHHHc---C-------CCchHHHHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence 988888777776655442 1 111122222222222 22233345667899999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHH
Q psy10231 518 LFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLE 568 (607)
Q Consensus 518 ~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (607)
+|++++|.+.+ .+..+...++++++++.+++.++. +++|||++++++|
T Consensus 457 ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 457 VGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 99999999988 444566678888888887776665 4569999877643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=368.87 Aligned_cols=422 Identities=29% Similarity=0.452 Sum_probs=325.3
Q ss_pred hhccccccccccccccccCCCcc-ccc-------CccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSI-ISI-------SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIG 105 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~-~~~-------s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 105 (607)
+.+|+|.+..+...+........ .+. ++.+.+++.++..+|..+|+++.|.++||+|||++++++.++..++
T Consensus 10 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~ 89 (451)
T PF00083_consen 10 FLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIG 89 (451)
T ss_pred HHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 56788887776665555421101 111 2345789999999999999999999999999999999999999999
Q ss_pred HHHHHhcc---chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h---
Q psy10231 106 WTIITVSK---GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T--- 174 (607)
Q Consensus 106 ~~~~a~a~---~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~--- 174 (607)
+++.++++ |++.+.++|+++|++.|+..+ ...++.|..|+++|++..++.+.++.+|.+++..++..+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 169 (451)
T PF00083_consen 90 SILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWG 169 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999 999999999999999999999 999999999999999999999999999999887776543 3
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcC
Q psy10231 175 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICL 254 (607)
Q Consensus 175 Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~ 254 (607)
||+.+++..+++++..+
T Consensus 170 Wr~~~~~~~~~~l~~~~--------------------------------------------------------------- 186 (451)
T PF00083_consen 170 WRILLIFGAIPSLLVLL--------------------------------------------------------------- 186 (451)
T ss_pred ccccccccccccccccc---------------------------------------------------------------
Confidence 66666666555554443
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCch
Q psy10231 255 PNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTA 334 (607)
Q Consensus 255 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~ 334 (607)
..+++||||+|+..++|.+++++.++++++.+.
T Consensus 187 -----------------------------------------------~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~ 219 (451)
T PF00083_consen 187 -----------------------------------------------LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI 219 (451)
T ss_pred -----------------------------------------------cccccccccceeccccccccccccccccccccc
Confidence 667788888888888888888888887655432
Q ss_pred hhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q psy10231 335 VADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIV 414 (607)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 414 (607)
++ ++.++.+++.++++ +...++.+++++++.++++...+.+..+.+..+.+....|.+.++++.+.+.+ .....+.
T Consensus 220 ~~-~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~ 295 (451)
T PF00083_consen 220 ED-EEIEEIKAEKKESQ--ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLIL 295 (451)
T ss_pred cc-cccccccccccccc--ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 22 22222222222211 11267888888877777778788788877788888888888988887776544 4455566
Q ss_pred HHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhh
Q psy10231 415 AGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWV 494 (607)
Q Consensus 415 ~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (607)
.+...++.+++.++.||+|||+.++.+...++++.+.++.......+ .+.......+....++...+..++.+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~ 372 (451)
T PF00083_consen 296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS---SSSWWSILSIVFLALFFAFFSLGWGPLPWI 372 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccceeeeeccccccccccccccc
Confidence 67777888888899999999999999888888777766511111110 001123344444555556666677888889
Q ss_pred hhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHH
Q psy10231 495 MIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENH 572 (607)
Q Consensus 495 ~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (607)
+++|++|++.|+++.|+...++++++++.+.+.+.+.+..+....+.++++++++..++.++++||||+++++|+++.
T Consensus 373 ~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 373 YTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999999999999999999999999999988888875568888888888888898999999999999998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=313.17 Aligned_cols=417 Identities=26% Similarity=0.453 Sum_probs=298.0
Q ss_pred hccccccccccccccccCCCcccccC--------ccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH
Q psy10231 35 CNNLTHAIPSILIPQLQKPSSIISIS--------SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW 106 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l~~~~~~~~~s--------~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 106 (607)
+.+++....+...|.+.. +++.+ ..+.+++.+.+.++..+++++.|+++||+|||++++++.+++.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 115 (481)
T TIGR00879 39 MFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA 115 (481)
T ss_pred hcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence 455667777777887776 66655 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhc---cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHh---hhh----hH
Q psy10231 107 TIITVS---KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLG---YIV----TW 175 (607)
Q Consensus 107 ~~~a~a---~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~---~~l----~W 175 (607)
++++++ .+++.++++|+++|+|.+...+ ..+++.|++|+++|++++++...+..+|..+++.++ ... +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w 195 (481)
T TIGR00879 116 ILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195 (481)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence 999664 3456899999999999999999 999999999999999999999999999999999998 433 89
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCC
Q psy10231 176 QYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLP 255 (607)
Q Consensus 176 r~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~ 255 (607)
|+.|++.++..++..+..++
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~------------------------------------------------------------ 215 (481)
T TIGR00879 196 RIPLGLQLIPAGLLFLGLFF------------------------------------------------------------ 215 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------------------------------------------------
Confidence 99999876666655553334
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchh
Q psy10231 256 NDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAV 335 (607)
Q Consensus 256 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~ 335 (607)
+||+|+++..+++.+++++..++.++.+..
T Consensus 216 --------------------------------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
T TIGR00879 216 --------------------------------------------------LPESPRWLVGKGRVEEARKSLARLRGTSGE 245 (481)
T ss_pred --------------------------------------------------CCCChHHHHHcCChHHHHHHHHHHhCCCCC
Confidence 445554444444433333333332222111
Q ss_pred hhhHHH---HHHHHHHHhhcCCccchhhhhhccCc-chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHH
Q psy10231 336 ADAELK---EIQQSLKVQMAGSSMDHCAQTFTNSA-VWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVA 410 (607)
Q Consensus 336 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 410 (607)
.....+ ..+...+.+.+ .....+.+.++..+ ..++.+....+..+......+...++.|.+.++.|.+.. ....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 324 (481)
T TIGR00879 246 DKELLDELELIDIKRSIEKR-SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLV 324 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHh-hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHH
Confidence 111110 00011111111 11111333333221 233444455555555555556677888888888777553 4556
Q ss_pred HHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccch
Q psy10231 411 SIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQ 490 (607)
Q Consensus 411 ~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (607)
.....+..+++.++.+++.||++||+.+..+..+.+++.+.++........ ..+....+..+.....+..++..+..+
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT--GSSKSSGNVAIVFILLFIAFFAMGWGP 402 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC--CcccchhHHHHHHHHHHHHHHHccccC
Confidence 677788889999999999999999999888877777776666532211110 000011333444445555556666667
Q ss_pred hhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHH
Q psy10231 491 LPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLL 567 (607)
Q Consensus 491 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (607)
....+..|.+|++.|+++.|+.+...++++++++.+.+.+.+..++...|++.++++++++++.+++.||+++++.+
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 77788899999999999999999999999999999999999998998889999999888888888888988876643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=309.32 Aligned_cols=384 Identities=15% Similarity=0.189 Sum_probs=256.2
Q ss_pred HhhhccccccccccccccccCCCcccccCccc-hhHH-----HHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHH
Q psy10231 32 KLHCNNLTHAIPSILIPQLQKPSSIISISSDD-ASWI-----ASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIG 105 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~-~~~i-----~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 105 (607)
..+++++|.+..+...|.+.+ +++.+.++ .+++ .++.++++.+++++.|+++||+|||+++.+++++++++
T Consensus 24 g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~ 100 (490)
T PRK10642 24 GNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSIS 100 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 346788999999999999988 77544433 2332 47788999999999999999999999999999999999
Q ss_pred HHHHHhccchhH--------HHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhh----
Q psy10231 106 WTIITVSKGFTL--------LCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI---- 172 (607)
Q Consensus 106 ~~~~a~a~~~~~--------l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~---- 172 (607)
++++++++|+.+ ++++|+++|++.|+.++ ..+++.|++|+++||++.++...+..+|..+++.+...
T Consensus 101 ~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~ 180 (490)
T PRK10642 101 TFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTI 180 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999875 88999999999999999 99999999999999999999988888888877654422
Q ss_pred --------hhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhh
Q psy10231 173 --------VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSA 244 (607)
Q Consensus 173 --------l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 244 (607)
.|||+.|++.+++++
T Consensus 181 ~~~~~~~~~gWR~~f~i~~~~~l--------------------------------------------------------- 203 (490)
T PRK10642 181 VGEANFLDWGWRIPFFIALPLGI--------------------------------------------------------- 203 (490)
T ss_pred cCHHHhcCccHHHHHHHHHHHHH---------------------------------------------------------
Confidence 156666655444333
Q ss_pred HHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHH
Q psy10231 245 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARN 324 (607)
Q Consensus 245 ~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~ 324 (607)
+.++....+||+|+|...+++.++..
T Consensus 204 -----------------------------------------------------~~~~~~~~~~esp~~~~~~~~~~~~~- 229 (490)
T PRK10642 204 -----------------------------------------------------IGLYLRHALEETPAFQQHVDKLEQGD- 229 (490)
T ss_pred -----------------------------------------------------HHHHHHHcCCCChhHHHHHHhhhhhc-
Confidence 33335566788887653321111000
Q ss_pred HHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCC
Q psy10231 325 SLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGS 403 (607)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 403 (607)
++ ...+....++++++++ .++......... +.....++.+..|.|.++++ .|.
T Consensus 230 ------~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~ 283 (490)
T PRK10642 230 ------RE-----------------GLQDGPKVSFKEIATK--HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHY 283 (490)
T ss_pred ------cc-----------------cccccccCCHHHHHHH--hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 0000111234445543 233333333222 23344567788899999864 466
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHH
Q psy10231 404 SLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482 (607)
Q Consensus 404 ~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (607)
+.. .........++.+++.++.|+++||+|||+.+..+.+...+....+... .. ............+...
T Consensus 284 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~g~ 354 (490)
T PRK10642 284 SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL--IN-------SNVIGLIFAGLLMLAV 354 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--Hh-------CCCHHHHHHHHHHHHH
Confidence 543 3445555667788899999999999999998877665433322221110 00 0111222222222222
Q ss_pred HHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
..+.. ......+..|.+|++.|+++.|+.+.++.+++.++|.+.+.+.+..+ +..++++..+.++++.+.. +++||+
T Consensus 355 ~~~~~-~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes 432 (490)
T PRK10642 355 ILNCF-TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKET 432 (490)
T ss_pred HHHHH-HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccc
Confidence 22222 23344677899999999999999888888888999999998887654 4555555555555555544 456998
Q ss_pred CCCCH
Q psy10231 562 QGKTL 566 (607)
Q Consensus 562 ~~~~~ 566 (607)
+++..
T Consensus 433 ~~~~~ 437 (490)
T PRK10642 433 ANRPL 437 (490)
T ss_pred cCCCC
Confidence 76544
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=279.58 Aligned_cols=428 Identities=18% Similarity=0.167 Sum_probs=306.6
Q ss_pred hhhccccccccccccccccCCCcc-----cccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSI-----ISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWT 107 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~-----~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 107 (607)
++.+++|...++.+.|.+..+.-. =|.++...+.+..+..+|..+|+++.|+++||+|||+++...++++.++++
T Consensus 50 fftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 50 FFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 467888988888888877664211 136677889999999999999999999999999999999999999999999
Q ss_pred HHHhccc-------hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhhHHHHH
Q psy10231 108 IITVSKG-------FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTS 179 (607)
Q Consensus 108 ~~a~a~~-------~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f 179 (607)
+++++.. ++++...|++.|+|.|+-+| +.+..+|...+++||...+......++|.+.|.+++-
T Consensus 130 ~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~-------- 201 (538)
T KOG0252|consen 130 LSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL-------- 201 (538)
T ss_pred HhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH--------
Confidence 8888732 67888999999999999999 9999999999999999999999999999988765442
Q ss_pred HHhHHHHHHHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCc
Q psy10231 180 AACAVVALVGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDR 258 (607)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r 258 (607)
+...+. .-.++. . +...
T Consensus 202 --------Iv~~~fe~~~~~~-----~---------------~~~~---------------------------------- 219 (538)
T KOG0252|consen 202 --------IVSAIFEKIFNGP-----S---------------TYPH---------------------------------- 219 (538)
T ss_pred --------HHHHHHhccCCCC-----C---------------CchH----------------------------------
Confidence 222211 111111 0 0000
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCCh-HHHHHHHHHHhcCchhhh
Q psy10231 259 GYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCT-KEARNSLVWFRRSTAVAD 337 (607)
Q Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~-~~~~~~l~~~~~~~~~~~ 337 (607)
...-||+.+.++.+|++..++.+..+|||+++.....++ +++.+..+ +. ..
T Consensus 220 ----------------------ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~---k~---~~ 271 (538)
T KOG0252|consen 220 ----------------------LDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMK---KV---LS 271 (538)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccc---cc---cc
Confidence 012499999999999999999999999999987433322 22221111 11 01
Q ss_pred hHHHHHHHHHHHhhcCC----ccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc--hH---
Q psy10231 338 AELKEIQQSLKVQMAGS----SMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD--DY--- 408 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~--- 408 (607)
.++++ +...+...+ ....+...+..+ .-+.++ .....++..-..++....+...++++.|.... ..
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Ll-gt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~ 346 (538)
T KOG0252|consen 272 VDIEA---ESTAESDVPPPSNSFGLFSRLFLRW-HGKHLL-GTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL 346 (538)
T ss_pred cccch---hhccccCCCCcccccchHHHHHHHH-HHHHHH-HHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence 11111 111111111 112233344333 223344 44444455555578888888888887766222 22
Q ss_pred -----HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHH
Q psy10231 409 -----VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCA 483 (607)
Q Consensus 409 -----~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (607)
....+..+..++|..+...++|++|||+..+.+++++.+..+.++.. +. +........++..+..++
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~---y~-----~~~~~~Gf~v~y~l~~ff 418 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP---YN-----QLENTIGFVVLYSLTFFF 418 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC---cc-----cccccCceeehHHHHHHH
Confidence 12233334445577777889999999999999999999888877762 11 112233344445555666
Q ss_pred HHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH-----hhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 484 SMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY-----LLNMGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 484 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
...+.......+.+|.+|++.|+++.|+....+..|++++...+.++.+ ..+....+++++++++++.++.++ +
T Consensus 419 ~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~ 497 (538)
T KOG0252|consen 419 GNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-I 497 (538)
T ss_pred HhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-e
Confidence 6777788888999999999999999999999999999999999999999 788888999999999988877654 5
Q ss_pred cCCCCCCHHHHHHH
Q psy10231 559 PETQGKTLLEIENH 572 (607)
Q Consensus 559 ~~~~~~~~~~~~~~ 572 (607)
|||+++++||++++
T Consensus 498 pEtk~~~leei~~e 511 (538)
T KOG0252|consen 498 PETKGKSLEEISNE 511 (538)
T ss_pred ecccccCHHHhcCh
Confidence 89999999987443
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=260.77 Aligned_cols=393 Identities=18% Similarity=0.223 Sum_probs=291.2
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
..+-+.|.+.. .++.+.-|..++....+.|..+++-.+|.++|++|||+.+.+..+...+...+.+.++|+..+++.
T Consensus 96 ~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f 172 (528)
T KOG0253|consen 96 LLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVF 172 (528)
T ss_pred HHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHH
Confidence 34566677777 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcC
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAV 196 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~ 196 (607)
|.+.|+|.|+ .| ..++-.|..|..+|...+-+. ..+.+|.+....+.... ||||.......+..+..+
T Consensus 173 ~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~----- 245 (528)
T KOG0253|consen 173 RALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR----- 245 (528)
T ss_pred HHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-----
Confidence 9999999999 88 999999999999999888777 88999998887777655 677666665544444444
Q ss_pred CCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHH
Q psy10231 197 PETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 276 (607)
Q Consensus 197 pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~ 276 (607)
T Consensus 246 -------------------------------------------------------------------------------- 245 (528)
T KOG0253|consen 246 -------------------------------------------------------------------------------- 245 (528)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhh----------hHHHHHHHH
Q psy10231 277 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVAD----------AELKEIQQS 346 (607)
Q Consensus 277 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~ 346 (607)
..+++|||||+...+++++++...++++.+.|...- ++.++.+.+
T Consensus 246 -------------------------f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~ 300 (528)
T KOG0253|consen 246 -------------------------FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD 300 (528)
T ss_pred -------------------------HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc
Confidence 778889999999999999999999998887774321 111111111
Q ss_pred HHHh--hc-CCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhC--------------------C
Q psy10231 347 LKVQ--MA-GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAG--------------------S 403 (607)
Q Consensus 347 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~ 403 (607)
..+. +. ++...+..+++ .|++++..+....+++. +...++........+++... .
T Consensus 301 ~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~ 378 (528)
T KOG0253|consen 301 LDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPL 378 (528)
T ss_pred hhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCc
Confidence 1111 11 11223334444 56777766655555543 33334444444444443211 0
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHH
Q psy10231 404 -SLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482 (607)
Q Consensus 404 -~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (607)
....+.-..+..+..+.|.++.+.++||+|||+.+..+.++.++..+.+.... .........+. .-
T Consensus 379 s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~------------~rn~~tvllf~-ar 445 (528)
T KOG0253|consen 379 SVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK------------TRNAYTVLLFT-AR 445 (528)
T ss_pred cchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc------------CcchhHHHHHH-HH
Confidence 11135567788899999999999999999999999998888877776654421 11122222222 23
Q ss_pred HHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
.+..+.+...++|+.|++|+..|+++.|....+.++|+++.|.+. +........+..+++.+++++.+.+.++--|||
T Consensus 446 afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 446 AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 334445567789999999999999999999999999999999888 444445556788899999999999888877999
Q ss_pred CCCH
Q psy10231 563 GKTL 566 (607)
Q Consensus 563 ~~~~ 566 (607)
+|.+
T Consensus 524 GR~l 527 (528)
T KOG0253|consen 524 GRSL 527 (528)
T ss_pred CCCC
Confidence 8753
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=289.16 Aligned_cols=388 Identities=19% Similarity=0.181 Sum_probs=289.2
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.+++++++|++.+++.|+++|++.++...
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 6778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh--hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccc
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV--TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGE 212 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l--~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~ 212 (607)
+..+++|++++++|+.+..+ ......|..+++.+++++ +||+.+++..+++++.++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~--------------------- 249 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLL--------------------- 249 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------------------
Confidence 99999999999999999999 666666666666666665 899999999888887766
Q ss_pred hhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q psy10231 213 FRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAAC 292 (607)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~ 292 (607)
T Consensus 250 -------------------------------------------------------------------------------- 249 (521)
T KOG0255|consen 250 -------------------------------------------------------------------------------- 249 (521)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCch---hhhhHHHHHH-HHHHHhhcCCccchhhhhhccCcc
Q psy10231 293 AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTA---VADAELKEIQ-QSLKVQMAGSSMDHCAQTFTNSAV 368 (607)
Q Consensus 293 ~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (607)
..++.||||||+..+++.+++.+.+++..+.|+ ..++..++.. ...+.....+....+.++++.++.
T Consensus 250 ---------~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 320 (521)
T KOG0255|consen 250 ---------LWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRL 320 (521)
T ss_pred ---------HHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHH
Confidence 455667999999999999999999888876542 1222222221 111111222344668889998876
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHH
Q psy10231 369 WKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALS 448 (607)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~ 448 (607)
++..+.....++. +...+|.-.+. ..+.+.+.+....+.+.....+....+...|+.|||.....+..+..++
T Consensus 321 ~~~~~~~~~~~~~------~~~~y~gl~~~-~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 321 RYRTLYLLFIWFV------FSLVYYGLSLN-VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHH------HhHHHHhhhhh-hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 7666655555531 22333332222 2244556666666777788888888899999999999999999999998
Q ss_pred HHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcH
Q psy10231 449 MGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYP 528 (607)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~ 528 (607)
++..++.... ...+.......+...+...+... .+.+..|++|+..|..+.+......+++++++|.+..
T Consensus 394 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 394 LLLFGWLPDD---------LGGWLHWILPLLGKFFIGSAFNL-IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHhhcc---------chhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888774321 11122333333333333444433 3789999999999999999999999999999988774
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHH
Q psy10231 529 DLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEIENH 572 (607)
Q Consensus 529 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (607)
.... ......+.+++....+...+..+++|||+++++.+..++
T Consensus 464 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 464 LLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 3333 222223333567777777777788999999988654433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=265.72 Aligned_cols=358 Identities=17% Similarity=0.196 Sum_probs=277.0
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...|..+.+...+..++|++.+ |+|+|..+.|++.|.|.++.++++++...+.||+.||++++..+.++.+++++++
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a 96 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA 96 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH
Confidence 3345666677778899999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHH
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVV 185 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~ 185 (607)
+++||+.++++|++.|+..|..++ ..++..++.|+++|++++++...+..++.++|.++|.++ |||+.|++.+.+
T Consensus 97 lAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l 176 (394)
T COG2814 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL 176 (394)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999988888777 999999999999
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
+++..+.
T Consensus 177 ~ll~~~~------------------------------------------------------------------------- 183 (394)
T COG2814 177 ALLALLL------------------------------------------------------------------------- 183 (394)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 9888773
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
.+..+| |+-. +++
T Consensus 184 ------------------------------------~~~~lP--~~~~--~~~--------------------------- 196 (394)
T COG2814 184 ------------------------------------LWKLLP--PSEI--SGS--------------------------- 196 (394)
T ss_pred ------------------------------------HHHhCC--CccC--CCC---------------------------
Confidence 333344 1000 000
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAI 423 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~ 423 (607)
......+..+.+|+|+.+..+.... ..+.+.+...+|...++++ .|++. ...+....++++.++|+.
T Consensus 197 ------~~~~~~~~~~~l~~p~v~~~l~~t~-----l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~ 265 (394)
T COG2814 197 ------LPGPLRTLLRLLRRPGVLLGLLATF-----LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNL 265 (394)
T ss_pred ------CCcchhHHHHHhcCchHHHHHHHHH-----HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHH
Confidence 0011112345677777665443333 2333466777777777765 46654 357788999999999999
Q ss_pred HHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhh-hhhhccccCc
Q psy10231 424 IGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLP-WVMIAELFPL 502 (607)
Q Consensus 424 ~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~p~ 502 (607)
++|++.|| +.|+.+.....+.++.++.+.+.. ...+..+..... .++.....+.. ....++.. +
T Consensus 266 ~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-----------~~~~~~~~~~~~--wg~a~~~~~~~~~~~~a~~~-p 330 (394)
T COG2814 266 LGGRLADR-GPRRALIAALLLLALALLALTFTG-----------ASPALALALLFL--WGFAFSPALQGLQTRLARLA-P 330 (394)
T ss_pred HHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHH--HHHHhhhhhhHHHHHhcccC-C
Confidence 99999999 888888877777777776655421 122222333322 33322222222 23444433 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 503 SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 503 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+.+..+.+++....|+|...|..+.|.+.++.|+....+..+.+.+++.++....
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999988888888888887776554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=278.89 Aligned_cols=346 Identities=11% Similarity=0.020 Sum_probs=237.2
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
..++.+|.+++ |+|+|..+.|++.+++.+++.+++++.|+++||+|||+++..+......+.+....++|+++++++
T Consensus 9 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 9 TFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34678888888 999999999999999999999999999999999999998766655554544333344899999999
Q ss_pred HHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCC
Q psy10231 122 RFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVP 197 (607)
Q Consensus 122 R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~p 197 (607)
|+++|+|.+...+....+.|++|+++|++++++...+..+|..+++.++..+ +||+.|++.++++++..+.
T Consensus 86 R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~----- 160 (368)
T TIGR00903 86 QLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL----- 160 (368)
T ss_pred HHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-----
Confidence 9999999997544777779999999999999999999999999999998888 9999999988887766552
Q ss_pred CChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHH
Q psy10231 198 ETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 277 (607)
Q Consensus 198 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~ 277 (607)
T Consensus 161 -------------------------------------------------------------------------------- 160 (368)
T TIGR00903 161 -------------------------------------------------------------------------------- 160 (368)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccc
Q psy10231 278 SLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMD 357 (607)
Q Consensus 278 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (607)
..+++||+|++. ++..+.+ +. .+
T Consensus 161 ------------------------~~~~lp~~p~~~---~~~~~~~------------------~~------------~~ 183 (368)
T TIGR00903 161 ------------------------VLAALPALPFQA---AEGFGFK------------------DA------------VK 183 (368)
T ss_pred ------------------------HHHHcCCCCCCC---CCCcchH------------------HH------------HH
Confidence 333455555321 0000000 00 01
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhcccCCc--
Q psy10231 358 HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRR-- 435 (607)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-- 435 (607)
+++++++++..+... +..++.....+.+..|.|.++++.+++........+..+. +.+..+++.||..||
T Consensus 184 ~~~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~---g~~g~~~~~d~~~r~~~ 255 (368)
T TIGR00903 184 EFGALAGRKDLWIIG-----AILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILA---GLIGVAVIPDRVARAGL 255 (368)
T ss_pred HHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH---HHHHHHHhhHHhhhhhh
Confidence 234667776554322 2233344456788899999998777654433333333333 344457777777543
Q ss_pred -hhHHH-hhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHH
Q psy10231 436 -ALATT-SAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVC 513 (607)
Q Consensus 436 -~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 513 (607)
+.... .....++....++. . ...+..+....+ ...+.....+..+.+.+|.+|++.|+++.|+.+
T Consensus 256 r~~~~~~~~~~~a~~~~~~~~-----~-------~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~ 322 (368)
T TIGR00903 256 RSIYIRAAALLIAAFFLALAF-----E-------LNRLALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIG 322 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----c-------cccHHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhh
Confidence 33222 22222222222221 0 112222222222 222233334556688999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 514 SLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 514 ~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
..+++++..+|.+.+.+.. +....|.+++...+++++...
T Consensus 323 ~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 323 FTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987774 566678888887777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=286.46 Aligned_cols=375 Identities=13% Similarity=0.046 Sum_probs=251.9
Q ss_pred ccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh-----c
Q psy10231 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV-----S 112 (607)
Q Consensus 38 ~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~-----a 112 (607)
++....++..|.+.+ |+|++.++.|++.+++.+++++++++.|+++||+|||+++.++.++++++.++.++ +
T Consensus 43 ~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 119 (467)
T PRK09556 43 LIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS 119 (467)
T ss_pred HHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc
Confidence 355667788899988 99999999999999999999999999999999999999999888888777766665 6
Q ss_pred cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-------hHHHHHHHhHH
Q psy10231 113 KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-------TWQYTSAACAV 184 (607)
Q Consensus 113 ~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-------~Wr~~f~~~~~ 184 (607)
+|++.+++.|+++|++.+...+ ..+++.|++|+++||++++++..+.++|.++++.+...+ +||..|.+.++
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~ 199 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI 199 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999999999998876543 47887777776
Q ss_pred HHHHHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccc
Q psy10231 185 VALVGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSA 263 (607)
Q Consensus 185 ~~~~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~ 263 (607)
++++..+.. ++++++|+..
T Consensus 200 ~~~~~~i~~~~~~~~~p~~~------------------------------------------------------------ 219 (467)
T PRK09556 200 IALIIGFIGLRYGSDSPEEL------------------------------------------------------------ 219 (467)
T ss_pred HHHHHHHHHHHhCCCChhhc------------------------------------------------------------
Confidence 666554422 2223332210
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHH
Q psy10231 264 FGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI 343 (607)
Q Consensus 264 ~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (607)
.| + +.++ .. .+.. ..++
T Consensus 220 -----------------------------------------------~~---~-~~~~---~~---~~~~-~~~~----- 236 (467)
T PRK09556 220 -----------------------------------------------GW---G-KAEE---IF---GEPI-SEED----- 236 (467)
T ss_pred -----------------------------------------------CC---C-Chhh---cc---cCcc-chhh-----
Confidence 00 0 0000 00 0000 0000
Q ss_pred HHHHHHhhcCCccchh-hhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHH
Q psy10231 344 QQSLKVQMAGSSMDHC-AQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~ 420 (607)
+.+++++....+.+ ++.++++..|... +..++.....+....|.|.++++ .|.+.. +........++.++
T Consensus 237 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~i 309 (467)
T PRK09556 237 --KETESTDMTKWQIFVEYVLKNPVIWLLC-----FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALV 309 (467)
T ss_pred --hccccccCcHHHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 00000000000001 1256666544322 22222333355678899998865 576543 45666677788999
Q ss_pred HHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc
Q psy10231 421 MAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF 500 (607)
Q Consensus 421 ~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 500 (607)
+.++.|+++||++||+..........++...+.. .. ....+......+.++. ...+..........|.+
T Consensus 310 g~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~ 378 (467)
T PRK09556 310 GSLLWGWLSDLANGRRALVACIALALIIFTLGVY---QH-------ATSEYMYLASLFALGF-LVFGPQLLIGVAAVGFV 378 (467)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH---Hh-------cCcHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhc
Confidence 9999999999999988766544333322211111 00 0112222222222221 22222222235667999
Q ss_pred CccchhhHHHHHHHHHHH-HHHHHhhhcHHHHH------------hhhhHHHHHHHHHHHHHHHHHhhh
Q psy10231 501 PLSVRGIMGGIVCSLGYL-FIFTTVKMYPDLMY------------LLNMGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 501 p~~~r~~~~g~~~~~~~~-~~~i~~~i~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 556 (607)
|++.||++.|+.+.++++ +.+++|.+.|.+.+ ..+|...|+++.++++++.+..++
T Consensus 379 p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 379 PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 77999999999999 577888888887777777665543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=282.92 Aligned_cols=374 Identities=13% Similarity=0.109 Sum_probs=254.9
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK 113 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~ 113 (607)
+++.+|....+...|.+++ |+|.+.++.|++.+++.+++++++++.|+++||+|||+++..++++++++++++++++
T Consensus 18 ~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T TIGR02332 18 IFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT 94 (412)
T ss_pred HHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888889998888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----------hHHHHHHHh
Q psy10231 114 GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----------TWQYTSAAC 182 (607)
Q Consensus 114 ~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----------~Wr~~f~~~ 182 (607)
|++++++.|+++|++.+...+ ...++.|++|+++|+++++++..+..+|..+++.+++.+ +||+.|++.
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~ 174 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE 174 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence 999999999999999999999 889999999999999999999999999999999887643 799999998
Q ss_pred HHHHHHHHHH-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 183 AVVALVGFAA-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 183 ~~~~~~~~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
++++++..++ .+++||+|+..
T Consensus 175 ~~~~l~~~~~~~~~~~~~p~~~---------------------------------------------------------- 196 (412)
T TIGR02332 175 GFPSVILGVMTWFWLDDSPDKA---------------------------------------------------------- 196 (412)
T ss_pred HHHHHHHHHHHhhccCCCcccC----------------------------------------------------------
Confidence 8887765442 23345544210
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
+|+.++ +.+...++.++++.+.++.
T Consensus 197 -------------------------------------------------~~l~~~----~~~~~~~~~~~~~~~~~~~-- 221 (412)
T TIGR02332 197 -------------------------------------------------KWLDEE----DKKALKEMIDNDQLTLEQP-- 221 (412)
T ss_pred -------------------------------------------------CCCCHH----HHHHHHHHHHhcccccccc--
Confidence 111110 1000000110000000000
Q ss_pred HHHHHHHHhhcCCc-cchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh--CCCc-chHHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSS-MDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA--GSSL-DDYVASIIVAGL 417 (607)
Q Consensus 342 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~ 417 (607)
++.. ++.... ...+++++ ++..+ ...+..++.....+.+..|.|.++++. +.+. ..........+.
T Consensus 222 --~~~~--~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~ 291 (412)
T TIGR02332 222 --EGAF--AHAAMPQRSMLREIF-TPAIM-----LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFC 291 (412)
T ss_pred --cccc--ccccccHHHHHHHhc-ChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHH
Confidence 0000 000000 01122222 23222 223333444555777889999999874 3332 345667778888
Q ss_pred HHHHHHHHhHhhcccCCchhH-HHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhh
Q psy10231 418 RFFMAIIGSACIQMFSRRALA-TTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMI 496 (607)
Q Consensus 418 ~~~~~~~~g~l~d~~grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (607)
.+++.++.++++||+++|+.. ........++. .+.. .. ............+..+. ....+..+...
T Consensus 292 ~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~----~~-------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 358 (412)
T TIGR02332 292 TIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS----AT-------DHNLIQLLGIIMASMGS-FSAMAIFWTTP 358 (412)
T ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH----hc-------CCHHHHHHHHHHHHHHh-hhhhhHHHhhc
Confidence 999999999999999977653 33332332222 1111 00 11112111122211111 12223344556
Q ss_pred ccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHH
Q psy10231 497 AELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCA 546 (607)
Q Consensus 497 ~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~ 546 (607)
.|.+|++.|+++.|+.+..+++|++++|.+.|.+.+..| |...++..+++
T Consensus 359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred ccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 788999999999999999999999999999999999875 77666655544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=280.27 Aligned_cols=357 Identities=15% Similarity=0.152 Sum_probs=255.4
Q ss_pred HhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 32 KLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
..+.++++.....+..|.+.+ ++|+++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 102 (426)
T PRK12307 26 GYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL 102 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888899888 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVA 186 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~ 186 (607)
+++++.++++|+++|++.+...+ ...++.|++|+++|+++.++...+..+|.++++.+...+ +||+.|++..+..
T Consensus 103 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~ 182 (426)
T PRK12307 103 ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV 182 (426)
T ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999998887665 8999998754433
Q ss_pred HHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhh
Q psy10231 187 LVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGP 266 (607)
Q Consensus 187 ~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~ 266 (607)
++...
T Consensus 183 ~~~~~--------------------------------------------------------------------------- 187 (426)
T PRK12307 183 LLVIY--------------------------------------------------------------------------- 187 (426)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 32222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHH
Q psy10231 267 VFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQS 346 (607)
Q Consensus 267 ~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (607)
.....||++++..++.+. .++..+.
T Consensus 188 -----------------------------------~~~~~p~~~~~~~~~~~~------------~~~~~~~-------- 212 (426)
T PRK12307 188 -----------------------------------IRARAPESKEWEEAKLSG------------KGKHSQS-------- 212 (426)
T ss_pred -----------------------------------HHHHCCCChHHHHhhhhc------------ccccccc--------
Confidence 222234544332111000 0000000
Q ss_pred HHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHH
Q psy10231 347 LKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIG 425 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 425 (607)
..+....++++.++++.++..... . ...+..+...+.+..+.|.++++.|.+.. .........++.+++.++.
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 286 (426)
T PRK12307 213 ----AWSVFSLSMKGLFNRAQFPLTLCV-F-IVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVW 286 (426)
T ss_pred ----chhhhhHHHHHHHhhchHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011234566776655432221 1 22222233334466788888887776543 3455666778889999999
Q ss_pred hHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHH-HhccchhhhhhhccccCccc
Q psy10231 426 SACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCAS-MLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 426 g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~ 504 (607)
+++.||++||+.+..+.....+..+.+... + ..... ......+...+ ..+..+....++.|.+|++.
T Consensus 287 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 354 (426)
T PRK12307 287 GLCADRIGLKKTFSIGLLMSFLFIFPLFRI---P--------QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEV 354 (426)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHH---c--------cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH
Confidence 999999999998887766655544333221 0 11111 11222222211 12233444567889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHH
Q psy10231 505 RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGM 539 (607)
Q Consensus 505 r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~ 539 (607)
|+++.|+.+.+.++++.++|.+.+.+.+..|+...
T Consensus 355 ~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 355 RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999999999999999998886543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=276.60 Aligned_cols=362 Identities=17% Similarity=0.180 Sum_probs=260.4
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK 113 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~ 113 (607)
++++++....+...|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK11551 25 LLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW 101 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc
Confidence 4567777778888999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 114 GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 114 ~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
|++.+++.|+++|++.+...+ ..+++.|++|+++|++++++...+..+|..+++.++..+ +||+.|++.++..++
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL 181 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999988766 899999987766555
Q ss_pred HHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHH
Q psy10231 189 GFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVF 268 (607)
Q Consensus 189 ~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~ 268 (607)
..+.
T Consensus 182 ~~~~---------------------------------------------------------------------------- 185 (406)
T PRK11551 182 LVPL---------------------------------------------------------------------------- 185 (406)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4442
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy10231 269 VSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLK 348 (607)
Q Consensus 269 ~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (607)
...++||+|++..++++.++.+..
T Consensus 186 ---------------------------------~~~~l~~~~~~~~~~~~~~~~~~~----------------------- 209 (406)
T PRK11551 186 ---------------------------------LMRWLPESRAFAQAAGAGKQRAPV----------------------- 209 (406)
T ss_pred ---------------------------------HHHhCCCChhHHhccCcchhhhhh-----------------------
Confidence 233345554432111100000000
Q ss_pred HhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhH
Q psy10231 349 VQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSA 427 (607)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~ 427 (607)
..+.+++++.++ . .......+......+....|.|.++++.|.+.. .........++.+++.++.++
T Consensus 210 ----------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 210 ----------LRALFGEGRATA-T-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred ----------HHHHhhhhhhhH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111111111 1 111112222233355667788999887777543 566677778889999999999
Q ss_pred hhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhh
Q psy10231 428 CIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGI 507 (607)
Q Consensus 428 l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 507 (607)
+.||++||+.+..+.....++.+.+... ...+....... +......+..+..+++..|.+|++.|++
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 344 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAAA------------PSFAGMLLAGF-AAGLFVVGGQSVLYALAPLFYPTQVRGT 344 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHcchhhhhh
Confidence 9999999998877655555554443321 11222222222 2222223345666688899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHhhhhH-HHHHHHHHHHHHHHHHhh
Q psy10231 508 MGGIVCSLGYLFIFTTVKMYPDLMYLLNMG-GMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 508 ~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 555 (607)
+.|+.+.+.+++..++|.+.|.+.+..+.. ..++......+++.++.+
T Consensus 345 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 345 GVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875443 344444444444444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=262.31 Aligned_cols=372 Identities=15% Similarity=0.111 Sum_probs=272.7
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
..+...|.+.+ |.++|.+|+|++.+.+.+++.++-++.|.++||.+.|+.+..++++.++.+++++++++.+.+.+.
T Consensus 47 nF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l 123 (448)
T COG2271 47 NFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVL 123 (448)
T ss_pred hHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45788899999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHh--hhh----hHHHHHHHhHHHHHHHHHHHh
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLG--YIV----TWQYTSAACAVVALVGFAAMH 194 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~--~~l----~Wr~~f~~~~~~~~~~~~~~~ 194 (607)
-+++|...|.-.| +...++.|+++++||+..++++.+-++|..+.+++. +.+ +||..|++.++++++..+.
T Consensus 124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~-- 201 (448)
T COG2271 124 WVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALI-- 201 (448)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--
Confidence 9999999999999 999999999999999999999999999999998888 555 8999999999998877663
Q ss_pred cCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHH
Q psy10231 195 AVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVL 274 (607)
Q Consensus 195 ~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~ 274 (607)
T Consensus 202 -------------------------------------------------------------------------------- 201 (448)
T COG2271 202 -------------------------------------------------------------------------------- 201 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhc--
Q psy10231 275 IVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMA-- 352 (607)
Q Consensus 275 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 352 (607)
..+..+|+|+- .+ ..+..+.+++.. +.+ +++++++
T Consensus 202 ---------------------------~~~~~rd~Pqs---~G-----LP~ie~~~~d~~-------e~~-~~~~~~~~l 238 (448)
T COG2271 202 ---------------------------LLFLLRDRPQS---EG-----LPPIEEYRGDPL-------EIY-EEEKENEGL 238 (448)
T ss_pred ---------------------------HHHHhCCCccc---cC-----CCCHHHhhcCch-------hhh-hhhccCCCc
Confidence 23333333321 00 000000000000 000 0000000
Q ss_pred CCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCc-chHHHHHHHHHHHHHHHHHHhHhhc
Q psy10231 353 GSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSL-DDYVASIIVAGLRFFMAIIGSACIQ 430 (607)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 430 (607)
...+.-.+.+++||..|...+.... ....=+.+..|.|.|+.+. |++. ++.....++-.++++|++++|+++|
T Consensus 239 s~~~i~~~YVL~Nk~iW~la~a~vf-----vYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD 313 (448)
T COG2271 239 TAWQIFVKYVLKNKLIWLLALANVF-----VYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD 313 (448)
T ss_pred cHHHHHHHHHHcChHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0011233445667655543322222 2223578899999999764 6665 4677888899999999999999999
Q ss_pred cc--CCchhHHHhh-HHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhh
Q psy10231 431 MF--SRRALATTSA-FFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGI 507 (607)
Q Consensus 431 ~~--grr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 507 (607)
|+ |||....+.+ +...++.+.+-. .+ +.++......+...+++..+..-+.-..+.|..|++..|+
T Consensus 314 klfkgrR~p~~~i~~~~i~~~~~~~w~----------~~-~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGt 382 (448)
T COG2271 314 KLFKGRRGPMALIFMLLITASLVLYWL----------AP-NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGT 382 (448)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHc----------CC-CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccc
Confidence 95 5665544332 222222222211 11 2233444444444444455555555578899999999999
Q ss_pred HHHHHHHHHHH-HHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 508 MGGIVCSLGYL-FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 508 ~~g~~~~~~~~-~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+.|+...++++ |...+....|.+.|..||...|.++.+.++++.++....
T Consensus 383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999 888888999999899999999998888888877765544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=282.75 Aligned_cols=379 Identities=16% Similarity=0.132 Sum_probs=256.2
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchh
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~ 116 (607)
.++....+..+|.+.+ ++|.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++
T Consensus 36 ~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
T PRK11663 36 YFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW 112 (434)
T ss_pred HHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455778888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.+++.|++.|++.|...+ ..+++.|++++++|++++++.+.+.++|..+++.+++.+ +||+.|++.+++.++..+
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999888776 999999988877665543
Q ss_pred H-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 192 A-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 192 ~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
. .+++||+|++...
T Consensus 193 ~~~~~~~~~p~~~~~----------------------------------------------------------------- 207 (434)
T PRK11663 193 FLCWRLRDKPQAMGL----------------------------------------------------------------- 207 (434)
T ss_pred HHHHHcCCCHhhcCC-----------------------------------------------------------------
Confidence 2 2334444322100
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHh
Q psy10231 271 LGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350 (607)
Q Consensus 271 ~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (607)
|+..+| +. +..+. + .+.+
T Consensus 208 ------------------------------------~~~~~~-----~~-~~~~~-----------~---------~~~~ 225 (434)
T PRK11663 208 ------------------------------------PSVGEW-----RH-DALEL-----------A---------QQQE 225 (434)
T ss_pred ------------------------------------CCcccc-----cc-ccccc-----------c---------hhcc
Confidence 000000 00 00000 0 0000
Q ss_pred hcCCccch-h-hhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHh
Q psy10231 351 MAGSSMDH-C-AQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGS 426 (607)
Q Consensus 351 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g 426 (607)
+...+... + ...++++..+.. .+..+......+.+..|.|.++++ .|.+.. .........++..++.++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g 300 (434)
T PRK11663 226 GAGLSRKEILTKYVLLNPYIWLL-----SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAG 300 (434)
T ss_pred ccCCChhhhHHHHHhcChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000001 1 113444433321 121222223345667788998854 466543 45667777888999999999
Q ss_pred Hhhccc--CCchhH-HHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 427 ACIQMF--SRRALA-TTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 427 ~l~d~~--grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
+++||+ ++|+.. ........+....+... +. ............. +.+..+..........|.+|++
T Consensus 301 ~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 369 (434)
T PRK11663 301 WGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PF-------ASYVMQAACFFTI-GFFVFGPQMLIGMAAAECSHKE 369 (434)
T ss_pred hhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---cc-------ccHHHHHHHHHHH-HHHHhhHHHHHHHHHHhcccHh
Confidence 999998 333332 22111111121111110 00 1111111111111 1122222222335678999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 504 VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 504 ~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.|+++.|+.+++.++|..++|.+.|.+.+..|+...|...+++++++++..+...++.
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999988888888777665544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=274.91 Aligned_cols=361 Identities=15% Similarity=0.193 Sum_probs=231.9
Q ss_pred hhhccccccccccccccccCCCcccc---cCccchhHHH---HHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIIS---ISSDDASWIA---SLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW 106 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~---~s~~~~~~i~---s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 106 (607)
.+++.+|....+...|.+.+ +++ .+..+.+.+. +..+++..++++++|+++||+|||+++..+.+++++++
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 35678898888899999988 663 4555444444 44555566999999999999999999999999999999
Q ss_pred HHHHhccchh--------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhh-----
Q psy10231 107 TIITVSKGFT--------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI----- 172 (607)
Q Consensus 107 ~~~a~a~~~~--------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~----- 172 (607)
+++++++|+. .++++|+++|++.|+.++ ..+++.|++|+++|+++.++...+...|.++++.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 108 LVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999875 589999999999999999 99999999999999999999888888887777654322
Q ss_pred -------hhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhH
Q psy10231 173 -------VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSAC 245 (607)
Q Consensus 173 -------l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 245 (607)
.|||+.|++.++++
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~----------------------------------------------------------- 208 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLA----------------------------------------------------------- 208 (432)
T ss_pred CHHHHhccchHHHHHHHHHHH-----------------------------------------------------------
Confidence 14555555544444
Q ss_pred HHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHH
Q psy10231 246 YVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNS 325 (607)
Q Consensus 246 ~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~ 325 (607)
++.++....+||+|++..++ +
T Consensus 209 ---------------------------------------------------ll~~~~~~~~~e~~~~~~~~------~-- 229 (432)
T PRK10406 209 ---------------------------------------------------VVALWLRRQLDETSQQETRA------L-- 229 (432)
T ss_pred ---------------------------------------------------HHHHHHHhcCCCCchHHHhh------h--
Confidence 33333555677775431100 0
Q ss_pred HHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCC
Q psy10231 326 LVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSS 404 (607)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 404 (607)
++..++++++++++.+. ......+......+.+..|.|.++++ .|.+
T Consensus 230 ----------------------------~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s 277 (432)
T PRK10406 230 ----------------------------KEAGSLKGLWRNRRAFI----MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMH 277 (432)
T ss_pred ----------------------------cccccHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00112445555443222 11111222233456778899998865 4665
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHH
Q psy10231 405 LD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCA 483 (607)
Q Consensus 405 ~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (607)
.. ......+..+...++.++.|+++||++||+.+.....+..+....+.. .... .......+....+....
T Consensus 278 ~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 278 ANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS--ALQN------VSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH--HHHc------CCcHHHHHHHHHHHHHH
Confidence 43 344555556667788888999999999998776655443332221111 0110 01112211111111111
Q ss_pred HHhccchhhhhhhccccCccchhhHHHHHHHHHHHH-HHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhh
Q psy10231 484 SMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLF-IFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 484 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 556 (607)
... ..+..+.+.+|.+|++.|+++.|+.+.++++. +...|.+.+ +.+..| +...+++.++..+++.+..++
T Consensus 350 ~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 350 VSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 111 22345578899999999999999999988763 444666666 445555 333445555555555544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=270.48 Aligned_cols=347 Identities=12% Similarity=0.135 Sum_probs=253.3
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
...+.+|.+.+ |+|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++++|++.++++
T Consensus 27 ~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (390)
T PRK03545 27 VPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLIS 103 (390)
T ss_pred HHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34456788888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcC
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAV 196 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~ 196 (607)
|+++|++.+...+ ..+++.|++|+++|++++++...+.++|..+++.+++.+ +||+.|++.+++.++..+.
T Consensus 104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~---- 179 (390)
T PRK03545 104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL---- 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999 999999999999999999999999999999999988766 9999999988877665442
Q ss_pred CCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHH
Q psy10231 197 PETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 276 (607)
Q Consensus 197 pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~ 276 (607)
T Consensus 180 -------------------------------------------------------------------------------- 179 (390)
T PRK03545 180 -------------------------------------------------------------------------------- 179 (390)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCcc
Q psy10231 277 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSM 356 (607)
Q Consensus 277 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (607)
....+||.|+ ++ ++. .
T Consensus 180 -------------------------~~~~~~~~~~-----~~-~~~---------------------------------~ 195 (390)
T PRK03545 180 -------------------------LIKLLPLLPS-----EH-SGS---------------------------------L 195 (390)
T ss_pred -------------------------HHHhCCCCCC-----CC-cch---------------------------------H
Confidence 2223344321 00 000 0
Q ss_pred chhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCC
Q psy10231 357 DHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSR 434 (607)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~gr 434 (607)
++.++.++++..+........... ..+....+.+.++++ .|.+.+ ........++.++++.++.+++.||++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~ 270 (390)
T PRK03545 196 KSLPLLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPS 270 (390)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 112345666654432222221111 123334566666654 466544 4556677788899999999999999998
Q ss_pred chhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHH
Q psy10231 435 RALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCS 514 (607)
Q Consensus 435 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 514 (607)
|.... +.....++...+... . ...+.......+.+.. .....+.......|..| +.|+++.|+.+.
T Consensus 271 ~~~~~-~~~~~~~~~~~l~~~--~---------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 336 (390)
T PRK03545 271 GFLLI-AIALLLVCLLLLLPA--A---------NSEWHLSVLSIFWGIA-IMCIGLAMQVKVLKLAP-DATDVAMALFSG 336 (390)
T ss_pred hHHHH-HHHHHHHHHHHHHHH--h---------chHHHHHHHHHHHHHH-HhcchHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 76543 333333333222110 0 1122222233332222 22233444466677776 578999999999
Q ss_pred HHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 515 LGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 515 ~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
..++|..+++.+.|.+.+..|+...++..+.+.+++.++.....
T Consensus 337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988888888777766553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=272.80 Aligned_cols=373 Identities=19% Similarity=0.207 Sum_probs=243.9
Q ss_pred Hhhhcccccccccccccc-ccCCCccc--ccCccchhHHH-----HHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHH
Q psy10231 32 KLHCNNLTHAIPSILIPQ-LQKPSSII--SISSDDASWIA-----SLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFI 103 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~-l~~~~~~~--~~s~~~~~~i~-----s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~ 103 (607)
..+++.+|....+.+.|. +.+ ++ +.++. .+++. ++.+++..+++++.|+++||+|||++++.+.++++
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~ 105 (438)
T PRK09952 30 GAVVDWYDFLLYGITAALVFNR---EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMG 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 446678888888777664 343 33 45554 46554 35567788999999999999999999999999999
Q ss_pred HHHHHHHhccchh--------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhh--
Q psy10231 104 IGWTIITVSKGFT--------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI-- 172 (607)
Q Consensus 104 ~~~~~~a~a~~~~--------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~-- 172 (607)
++++++++++|+. .++++|+++|++.|+.++ ...++.|++|+++|++..+....+..+|.+++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 106 IATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 588999999999999999 99999999999999999999999999998887655432
Q ss_pred ----------hhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchh
Q psy10231 173 ----------VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMS 242 (607)
Q Consensus 173 ----------l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 242 (607)
.+||+.|++.+++.+
T Consensus 186 ~~~~~~~~~~~gWr~~f~~~~~~~l------------------------------------------------------- 210 (438)
T PRK09952 186 MMTTDEQFLSWGWRIPFLFSIVLVL------------------------------------------------------- 210 (438)
T ss_pred HhCCHHHhhccChHHHHHHHHHHHH-------------------------------------------------------
Confidence 256666655544433
Q ss_pred hhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHH
Q psy10231 243 SACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEA 322 (607)
Q Consensus 243 ~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~ 322 (607)
+.+......||+|+|..++++.++.
T Consensus 211 -------------------------------------------------------~~~~l~~~~~es~~~~~~~~~~~~~ 235 (438)
T PRK09952 211 -------------------------------------------------------IALWVRNGMEESAEFEQQQHEQAAA 235 (438)
T ss_pred -------------------------------------------------------HHHHHHHhCCCChhHHHHHhhcccc
Confidence 3233455677777654332111000
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-h
Q psy10231 323 RNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-A 401 (607)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (607)
+ ......+..+++++.+.... ...+......+....|.|.++++ .
T Consensus 236 ~------------------------------~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~y~~~~~ 281 (438)
T PRK09952 236 K------------------------------KRIPVIEALLRHPGAFLKII----ALRLCELLTMYIVTAFALNYSTQNL 281 (438)
T ss_pred c------------------------------ccCCHHHHHHHchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00001112333443332111 11222333456677788888754 4
Q ss_pred CCCcch-HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHH
Q psy10231 402 GSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILAN 480 (607)
Q Consensus 402 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (607)
|.+... .....+.+...+++.++.|+++||+|||+.+..+.+...++.+.+... ... ....+..+......
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~ 353 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA--LEA------QSIFWIVFFSIMLA 353 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHc------CChHHHHHHHHHHH
Confidence 554432 234445566778888999999999999998877665544433222111 000 01112222222222
Q ss_pred HHHHHhccchhhhhhhccccCccchhhHHHHHHHHHH-HHHHHHhhhcHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 481 VCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGY-LFIFTTVKMYPDLMYLL--NMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 481 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~i~~~i~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
....+ ...+..+++..|.+|++.|+++.|+.+..+. +++.++|.+.+.+.+.. +|...+.+.+++++++.+..+ .
T Consensus 354 ~~~~~-~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~ 431 (438)
T PRK09952 354 NIAHD-MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-L 431 (438)
T ss_pred HHHHH-HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-H
Confidence 22222 2234556889999999999999999877765 88999999999998854 355666666666666665544 4
Q ss_pred ccCCC
Q psy10231 558 LPETQ 562 (607)
Q Consensus 558 ~~~~~ 562 (607)
.+|++
T Consensus 432 ~~~~~ 436 (438)
T PRK09952 432 MKDNQ 436 (438)
T ss_pred ccccc
Confidence 46544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=271.12 Aligned_cols=370 Identities=14% Similarity=0.121 Sum_probs=252.1
Q ss_pred HhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 32 KLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
..+.++++....++..|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 96 (405)
T TIGR00891 20 GWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF 96 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 335677788888899999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h--HHHHHHHhHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T--WQYTSAACAV 184 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~--Wr~~f~~~~~ 184 (607)
++|++.+++.|+++|++.+...+ ..+++.|++|+++|+++.++...+..+|..+++.++..+ + ||+.|++.++
T Consensus 97 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~ 176 (405)
T TIGR00891 97 APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISIL 176 (405)
T ss_pred hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999888766 4 9998887665
Q ss_pred HHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 185 VALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 185 ~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
+.++..+....
T Consensus 177 ~~~~~~~~~~~--------------------------------------------------------------------- 187 (405)
T TIGR00891 177 PIIFALWLRKN--------------------------------------------------------------------- 187 (405)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 55554442233
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
+||++++...+++.++.++..++..+.++..+...++.
T Consensus 188 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (405)
T TIGR00891 188 -----------------------------------------IPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTL- 225 (405)
T ss_pred -----------------------------------------CCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhh-
Confidence 34443332211111111111111111000000000000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~ 422 (607)
....++ +.++.+...........+ ..........+.|.++.+ .|.+.. .........++.+++.
T Consensus 226 -----------~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~ 291 (405)
T TIGR00891 226 -----------AAAMVQ--SAGKRWPTFVYLVVLVLF-ANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG 291 (405)
T ss_pred -----------hHHhhh--hhhhhhHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000 011112212211212111 112233455566777753 466543 4556677788899999
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
++.+++.||++||+.+..+.....+....+.. . ....+...... .+......+..+....++.|.+|+
T Consensus 292 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 359 (405)
T TIGR00891 292 CVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA---I--------GANVAVLGLGL-FFQQMLVQGIWGILPKHLGEYFPT 359 (405)
T ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH---h--------CCchHHHHHHH-HHHHHHHccchhhHHHHHhhhCCc
Confidence 99999999999999887766554332222111 0 01222222221 222233333445566788999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHH
Q psy10231 503 SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMW 541 (607)
Q Consensus 503 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~ 541 (607)
+.|+++.|+.+.+.+++..++|.+.|.+.+..| +...+.
T Consensus 360 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 360 DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 999999999999999999999999999999988 654433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=271.03 Aligned_cols=390 Identities=13% Similarity=0.032 Sum_probs=265.6
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...++..+|.++.+..+|.+.+ |+|.+.++.+|+.+.|.++..++.+++|+++||+|||++++.+.+++.+++++++
T Consensus 13 ~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~ 89 (495)
T PRK14995 13 LVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA 89 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4456678888899999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhcc-CCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHH
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEIC-LPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAV 184 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~ 184 (607)
+++|++.++++|+++|+|.+...+ ....+.+.+ |+++|+++++++.....+|..+||.+++.+ +|||.|++..+
T Consensus 90 ~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~ 169 (495)
T PRK14995 90 FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVP 169 (495)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 999999999999999999999999 888887765 678999999999999999999999999888 99999999988
Q ss_pred HHHHHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccc
Q psy10231 185 VALVGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSA 263 (607)
Q Consensus 185 ~~~~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~ 263 (607)
+.++..++. +++||.++. +.++.|...
T Consensus 170 ~~~~~~~l~~~~l~~~~~~---~~~~~d~~g------------------------------------------------- 197 (495)
T PRK14995 170 IVLVVMGLTARYVPRQAGR---RDQPLNLGH------------------------------------------------- 197 (495)
T ss_pred HHHHHHHHHHHhCCCCCCC---CCCCCChHh-------------------------------------------------
Confidence 877765544 557776421 011100000
Q ss_pred hhhHHHHHHHHHHHHHH-HHHhhHHHHhhh-HHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 264 FGPVFVSLGVLIVYSLG-YIVTWQYTSAAC-AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 264 ~~~~~~~~g~~~~~~~~-~~~~Wr~~~~~~-~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
.......+......... ....|....... .+.+.+. +..+...|.
T Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~f~~~e~-------------------------------- 244 (495)
T PRK14995 198 ALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL-LGLFIRTQL-------------------------------- 244 (495)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH-HHHHHHHHh--------------------------------
Confidence 00000000000000000 001112111111 1111111 111111110
Q ss_pred HHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCc-chHHHHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSL-DDYVASIIVAGLRF 419 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~ 419 (607)
..+...-..++++++.........+ ......+....+.|.++++. |.+. +.+.......+...
T Consensus 245 ----------~~~~p~~~~~lf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~ 309 (495)
T PRK14995 245 ----------AASRPMIDMRLFTHRIILSGVVMAM-----TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASG 309 (495)
T ss_pred ----------cCCCCCcCHHHhCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0001111234666665443222222 22223456677888888764 6654 45677777888899
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++.++.|++.||+|+|+.+..+..+..++...+.... .....+.......+.+.+.+.. .+.....+.+.
T Consensus 310 ~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~ 379 (495)
T PRK14995 310 FSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD---------FSTQQWQAWGLMALLGFSAASA-LLASTSAIMAA 379 (495)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc---------CCCchHHHHHHHHHHHHhHHHH-HHHHHHHHHhc
Confidence 9999999999999999988877777766665544311 1122233333333333333332 33344667788
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 500 FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
.|++.++.+.++.++..++|+.+++.+.+.+.++
T Consensus 380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-30 Score=265.89 Aligned_cols=354 Identities=12% Similarity=0.061 Sum_probs=256.0
Q ss_pred cccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHH
Q psy10231 41 AIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCV 120 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~ 120 (607)
...++.+|.+++ |+++|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.+++
T Consensus 26 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 26 TSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred hccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 456788899988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHHHh
Q psy10231 121 GRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAAMH 194 (607)
Q Consensus 121 ~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~ 194 (607)
+|+++|+|.+...+ ...++.|+++ ++|+++++.+..+..+|..+++.++..+ +||+.+.+.++..++..+.
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-- 179 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFA-- 179 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999 9999999986 8899999999988888888888777664 7998877655544333221
Q ss_pred cCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHH
Q psy10231 195 AVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVL 274 (607)
Q Consensus 195 ~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~ 274 (607)
T Consensus 180 -------------------------------------------------------------------------------- 179 (393)
T PRK09705 180 -------------------------------------------------------------------------------- 179 (393)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCC
Q psy10231 275 IVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGS 354 (607)
Q Consensus 275 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (607)
..+..++.|+ .++ +.
T Consensus 180 ---------------------------~~~~~~~~~~-------~~~------------------------------~~- 194 (393)
T PRK09705 180 ---------------------------WWWQSAREVA-------SSH------------------------------KT- 194 (393)
T ss_pred ---------------------------HHHHhcCCCc-------ccc------------------------------CC-
Confidence 0000011110 000 00
Q ss_pred ccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccC
Q psy10231 355 SMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFS 433 (607)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g 433 (607)
....++.+++++.+... +..+....+++....|.|.++++.|.+.. .+....+.+++.+++.++.+++.||++
T Consensus 195 -~~~~~~~l~~~~~~~l~-----~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~ 268 (393)
T PRK09705 195 -TTTPVRVVFTPRAWTLG-----VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQD 268 (393)
T ss_pred -CcCCcccccCHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00112233444333211 11222233456778889999887777544 566777888999999999999999999
Q ss_pred CchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc-CccchhhHHHHH
Q psy10231 434 RRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF-PLSVRGIMGGIV 512 (607)
Q Consensus 434 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~ 512 (607)
||+....+..+..++..++... + ....... ..+.+.+.+ ...+.......+.+ |++.++++.|+.
T Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~---~--------~~~~~~~--~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~ 334 (393)
T PRK09705 269 RRKLLMLALVLQLVGFCGFIWL---P--------LQLPVLW--AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFM 334 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHc---c--------chHHHHH--HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9998888776666655443321 1 1111111 112222222 22344445555666 467899999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy10231 513 CSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFLPETQGKT 565 (607)
Q Consensus 513 ~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (607)
+.+++++..++|.+.|++.|..| +...|.+.++.+++..+....+.||++.+.
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999886 566677777777777777677888887654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=274.27 Aligned_cols=408 Identities=14% Similarity=0.103 Sum_probs=266.9
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...++++++....++.+|.+.+ ++|.++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 103 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG 103 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888899988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHH
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVV 185 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~ 185 (607)
+++|++.+++.|++.|++.+...+ ...++.|.+++++|+++.++...+..+|..+++.+++.+ +||+.|++..+.
T Consensus 104 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 104 FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999988877 899999986655
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
.++.++....+||++++..+++++++..+..+. ...+++.. .
T Consensus 184 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~----~ 225 (496)
T PRK03893 184 IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDI----------------------------------LYRGEHRI----I 225 (496)
T ss_pred HHHHHHHHHhCCCchhhhhhccccccchhHHHH----------------------------------HhcchhHH----H
Confidence 555444446678887654433222111000000 00000000 0
Q ss_pred hHHHHHHHHHH--HHHHHHHhhHHHH-hhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHH
Q psy10231 266 PVFVSLGVLIV--YSLGYIVTWQYTS-AACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE 342 (607)
Q Consensus 266 ~~~~~~g~~~~--~~~~~~~~Wr~~~-~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (607)
........... ..... ..|+... ....+...... ..+. .+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~--------------------------------- 269 (496)
T PRK03893 226 NILLTLAAAAALWFCFAG-NLQNAAIVAVLGLLCAAIF-ISFM-VQS--------------------------------- 269 (496)
T ss_pred HHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHH-HHHH-HHh---------------------------------
Confidence 00000000000 00000 0001000 00000000000 0000 000
Q ss_pred HHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHH
Q psy10231 343 IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~ 420 (607)
++. ++..........+..+...+....+.|.+++ +.|.+.. .........++.++
T Consensus 270 ----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~ 326 (496)
T PRK03893 270 ----------------------SGK-RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAV 326 (496)
T ss_pred ----------------------ccc-chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 0011111212222211222345678888885 5566543 56677778888999
Q ss_pred HHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc
Q psy10231 421 MAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF 500 (607)
Q Consensus 421 ~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 500 (607)
+.++.+++.||++||+.+..+..+..+..+.+... . .................+.+..+....++.|.+
T Consensus 327 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 327 GCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----------G-GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----------c-ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 99999999999999998877665554443322210 0 111122222222222223333445557888999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHH
Q psy10231 501 PLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLL 549 (607)
Q Consensus 501 p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~ 549 (607)
|++.|++++|+.+....+++.++|.+.|.+.+..|+...+...++.+.+
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777665544433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=266.39 Aligned_cols=347 Identities=18% Similarity=0.254 Sum_probs=229.5
Q ss_pred HHHhhhccccccccccccccccCCCcccccCccchhHHH-HHH-----HHHhhHhhhHHHHhhhhhcCchhhhhhhhHHH
Q psy10231 30 IGKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIA-SLG-----VISTPVGSLFAGIFMDLLGRKTTVQLTAIPFI 103 (607)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~-s~~-----~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~ 103 (607)
....+++.+|....+...|.+.+ |++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+.+++.
T Consensus 21 ~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 97 (434)
T PRK15075 21 TSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 44557788899999999999999 9999888875543 322 23335789999999999999999999999999
Q ss_pred HHHHHHHhccchh--------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-
Q psy10231 104 IGWTIITVSKGFT--------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV- 173 (607)
Q Consensus 104 ~~~~~~a~a~~~~--------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l- 173 (607)
++++++++++|++ .++++|+++|++.+...+ ...++.|++|+++|++++++...+.++|..+++.++..+
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 98 SGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 468999999999999999 999999999999999999999888888777776665542
Q ss_pred -----------hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchh
Q psy10231 174 -----------TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMS 242 (607)
Q Consensus 174 -----------~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 242 (607)
+||+.|++..+...
T Consensus 178 ~~~~~~~~~~~gWr~~f~~~~~~~~------------------------------------------------------- 202 (434)
T PRK15075 178 QWLSPAQMAEWGWRIPFLIGCLIVP------------------------------------------------------- 202 (434)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHH-------------------------------------------------------
Confidence 66766665433221
Q ss_pred hhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHH
Q psy10231 243 SACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEA 322 (607)
Q Consensus 243 ~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~ 322 (607)
+.++.....||++++..++++
T Consensus 203 -------------------------------------------------------~~~~~~~~~~e~~~~~~~~~~---- 223 (434)
T PRK15075 203 -------------------------------------------------------FIFLIRRSLEETEEFLARKHR---- 223 (434)
T ss_pred -------------------------------------------------------HHHHHHHhcCCCHHHHHhhhc----
Confidence 111122334443322110000
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-h
Q psy10231 323 RNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-A 401 (607)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (607)
.+....+++..++ ++.....+ ...+......+....|.|.++++ .
T Consensus 224 ------------------------------~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~ 269 (434)
T PRK15075 224 ------------------------------PSMREIFRSLAAN---WRIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVL 269 (434)
T ss_pred ------------------------------cccccHHHHHHHh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000001111111 22222222 22222344567788899999976 4
Q ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHH
Q psy10231 402 GSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILAN 480 (607)
Q Consensus 402 g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (607)
|.+.. ......+..+.++++.++.|+++||+|||+.+..+.....+........ ... ..............
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~ 341 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LVA------APSFARMLAVELWL 341 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HHc------CCchHHHHHHHHHH
Confidence 77544 4555667778889999999999999999998776544433221111000 000 01111111111112
Q ss_pred HHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHH-HHHHHhhhcHHHHHhhhh
Q psy10231 481 VCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYL-FIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 481 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~i~~~i~~~l~~~~g~ 536 (607)
....+ ...+..+.+..|.+|++.|+++.|+.+.++.. ++.++|.+.+.+.+..|+
T Consensus 342 ~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 342 SFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 22222 22344457789999999999999998776665 588899999999998875
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=265.46 Aligned_cols=379 Identities=16% Similarity=0.170 Sum_probs=264.5
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchh
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~ 116 (607)
.++....+...|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++|++
T Consensus 7 ~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T TIGR00893 7 YLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83 (399)
T ss_pred HHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence 3566667788888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.++++|+++|++.+...+ ...++.|++|+++|++.+++...+..+|..+++.+++.+ +||+.|++.+++.++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999998876 899999998887776655
Q ss_pred HH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 192 AM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 192 ~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
.. +..||+|+.
T Consensus 164 ~~~~~~~~~~~~-------------------------------------------------------------------- 175 (399)
T TIGR00893 164 LWLKFIPDPPQK-------------------------------------------------------------------- 175 (399)
T ss_pred HhhheecCCCCc--------------------------------------------------------------------
Confidence 32 223333211
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHH-HHHHHhcCchhhhhHHHHHHHHHHH
Q psy10231 271 LGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARN-SLVWFRRSTAVADAELKEIQQSLKV 349 (607)
Q Consensus 271 ~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (607)
+++ ..++.++ ..++... +..++
T Consensus 176 ---------------------------------------~~~-----~~~~~~~~~~~~~~~-------------~~~~~ 198 (399)
T TIGR00893 176 ---------------------------------------AKW-----LTEEEKYIVVGGLLA-------------EQQGK 198 (399)
T ss_pred ---------------------------------------ccc-----CCHHHHhhcchhhcc-------------ccccc
Confidence 000 0000000 0000000 00001
Q ss_pred hhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHHHHhH
Q psy10231 350 QMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAIIGSA 427 (607)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 427 (607)
++.+....+.++.+++++.+... +..+...........+.|.++++ .+.+. +.........+..+++.++.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (399)
T TIGR00893 199 GPSTPKKYQIKELLKDRRVWGLA-----LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGR 273 (399)
T ss_pred cccCCCccchHHHhcCHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11122334556667666544322 22222333456677788888765 45543 3456677778888999999999
Q ss_pred hhcccCCchhHHH-hhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchh
Q psy10231 428 CIQMFSRRALATT-SAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRG 506 (607)
Q Consensus 428 l~d~~grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 506 (607)
+.||++||+.... ......++.+.......... . ............ ...+..+..+..+.+..|.+|++.|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (399)
T TIGR00893 274 LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-----Y-VNIPYAALALVA-LGFFGLGAGAIGWALISDNAPGNIAG 346 (399)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc-----c-chhHHHHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHH
Confidence 9999999862111 11111111111111111100 0 111122222222 22223335677788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhh
Q psy10231 507 IMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 507 ~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 555 (607)
++.|+.+.+.+++..++|.+.|.+.+..| +...+.+.+++++++.+..+
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 88788887777777665544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=263.42 Aligned_cols=356 Identities=16% Similarity=0.154 Sum_probs=251.3
Q ss_pred hhHHHhhhcccccccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH
Q psy10231 28 SWIGKLHCNNLTHAIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW 106 (607)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~ 106 (607)
......+...++.++..+.+|. +.+ ++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.++++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 19 SIVMFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 3444455666677777777775 566 899999999999999999999999999999999999999999999998887
Q ss_pred HHHHhc--------cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----
Q psy10231 107 TIITVS--------KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---- 173 (607)
Q Consensus 107 ~~~a~a--------~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---- 173 (607)
+.++++ .+++.+++.|+++|++.+...+ ...++.|++++++|+++.++...+..+|..+|+.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 776654 2577899999999999999999 999999999999999999999999999999999888766
Q ss_pred hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhc
Q psy10231 174 TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEIC 253 (607)
Q Consensus 174 ~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~ 253 (607)
+||+.+++..+..++..+
T Consensus 176 g~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 193 (399)
T PRK05122 176 GLAGLGLLIMLLALLGLL-------------------------------------------------------------- 193 (399)
T ss_pred cHHHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 899888776655543333
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCc
Q psy10231 254 LPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRST 333 (607)
Q Consensus 254 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~ 333 (607)
.....|+++. + + ++ +.
T Consensus 194 ------------------------------------------------~~~~~~~~~~----~-~-~~-~~--------- 209 (399)
T PRK05122 194 ------------------------------------------------LARPRPAVPP----V-K-GE-RL--------- 209 (399)
T ss_pred ------------------------------------------------HHhcCCCCCC----C-C-cc-ch---------
Confidence 1111222110 0 0 00 00
Q ss_pred hhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHH
Q psy10231 334 AVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASII 413 (607)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 413 (607)
+.++.+++ .+.... ...+. .........+.+.++.+.+.+ +.......
T Consensus 210 ------------------------~~~~~~~~--~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 257 (399)
T PRK05122 210 ------------------------PFRRVLGR--VWPYGM-GLALA----SIGFGTIATFITLYYAARGWD-GAALALTL 257 (399)
T ss_pred ------------------------hHHHHHHH--HHHHHH-HHHHH----HHHHHHHHHHHHHHHHHcccc-cchHHHHH
Confidence 00011110 111111 11111 112344556667776665552 33444556
Q ss_pred HHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhh
Q psy10231 414 VAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPW 493 (607)
Q Consensus 414 ~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (607)
..++.+++.++.+++.||+++|+.+..+..+..++.+.+... ++.+..+....+.+.+.+. ..+...
T Consensus 258 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~~~-~~~~~~ 324 (399)
T PRK05122 258 FGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------PSPWMALIGAALTGFGFSL-VFPALG 324 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhHHH-HHHHHH
Confidence 677788899999999999999998887777766666555431 1222223333333333322 234444
Q ss_pred hhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 494 VMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 494 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
....|..|++.|+++.|+.+...+++..+++.+.|.+.+..|++..++..+++++++.++..++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667889999999999999999999999999999999999999988888888777776665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=265.37 Aligned_cols=375 Identities=12% Similarity=0.053 Sum_probs=269.4
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...++..+..+...+.+|.+.+ +++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 24 IARFISIFGLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 3344555666677788888887 8888999999999999999999999999999999999999999888887766554
Q ss_pred h-----ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHH
Q psy10231 111 V-----SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSA 180 (607)
Q Consensus 111 ~-----a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~ 180 (607)
. .++++.+++.|+++|++.+...+ ..+++.|+.|+++|+++.++...+.++|..+|+.+++.+ +|++.|+
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 2 56789999999999999999888 899999999999999999999999999999999998876 8999998
Q ss_pred HhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccc
Q psy10231 181 ACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGY 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~ 260 (607)
+.++..++..++.+.+||+++.
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~---------------------------------------------------------- 202 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPALPPP---------------------------------------------------------- 202 (417)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC----------------------------------------------------------
Confidence 8777766555533333332110
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHH
Q psy10231 261 LSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAEL 340 (607)
Q Consensus 261 ~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (607)
. +++.++ .
T Consensus 203 ----------------------------------------------------~--~~~~~~------------------~ 210 (417)
T PRK10489 203 ----------------------------------------------------P--QPREHP------------------L 210 (417)
T ss_pred ----------------------------------------------------C--cccccc------------------h
Confidence 0 000000 0
Q ss_pred HHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHH
Q psy10231 341 KEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLR 418 (607)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~ 418 (607)
++. .+.++..++++..+...+..+ +... ......+.|.+.++ .|.+.. .+......+++.
T Consensus 211 ~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~ 272 (417)
T PRK10489 211 RSL------------LAGFRFLLASPVVGGIALLGG-LLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGA 272 (417)
T ss_pred HHH------------HHHHHHHHcChHHHHHHHHHH-HHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHH
Confidence 000 001223344443332222211 1111 23456677888876 566543 456666778888
Q ss_pred HHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcc
Q psy10231 419 FFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAE 498 (607)
Q Consensus 419 ~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 498 (607)
+++.++.+++.||.++++.+..+.....++.+.+... ...+......++++.+.+ ...+...++..|
T Consensus 273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 339 (417)
T PRK10489 273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------------PMWILAVLCLALFGYLSA-ISSLLQYTLLQT 339 (417)
T ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc------------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 9999999999999877777777766666665544331 111222223333332222 223445578889
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHH
Q psy10231 499 LFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEI 569 (607)
Q Consensus 499 ~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (607)
..|++.|+++.|+.+...+++..+++.+.|.+.+..|....+...+.+.++..++.....+++|+++.+|.
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 340 QTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred hCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999999999998888888888888777777777788887766553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=259.10 Aligned_cols=349 Identities=12% Similarity=0.049 Sum_probs=250.3
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
..++..|.+.+ ++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++
T Consensus 21 ~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 21 TWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred hhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcC
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAV 196 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~ 196 (607)
|+++|++.+..++ ...++.|+++ ++|+++.++...+.++|..+++.+...+ +||+.|++.+++.++..+..
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--- 173 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG--- 173 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999988 8888889886 6799999999999999988765555444 89999999888877765522
Q ss_pred CCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHH
Q psy10231 197 PETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 276 (607)
Q Consensus 197 pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~ 276 (607)
T Consensus 174 -------------------------------------------------------------------------------- 173 (377)
T TIGR00890 174 -------------------------------------------------------------------------------- 173 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCcc
Q psy10231 277 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSM 356 (607)
Q Consensus 277 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (607)
.++++|.|+. .+.++++ . .+..
T Consensus 174 --------------------------~~~~~~~~~~--~~~~~~~--------------~----------------~~~~ 195 (377)
T TIGR00890 174 --------------------------AFLIGYPPGQ--LIKTNIE--------------V----------------SVKD 195 (377)
T ss_pred --------------------------HHheecCchh--ccccCcc--------------c----------------chhh
Confidence 2222222110 0000000 0 0000
Q ss_pred chhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCc
Q psy10231 357 DHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRR 435 (607)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr 435 (607)
.+.++.+++++.+... ....+.. ........+.+.+.++.+.+.. ......+..+..+++.++.+++.||++||
T Consensus 196 ~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 196 YTVWEMLRTPQFWVLY-LSFFLNA----VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred hhHHHHHcCccHHHHH-HHHHHHh----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1223455555544322 1111111 1122333445556666666443 45567778888999999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHH
Q psy10231 436 ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSL 515 (607)
Q Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 515 (607)
+.+..+.....++.+.+... +.................. ....+....+..|.+|++.|+++.|+.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 339 (377)
T TIGR00890 271 KTMSIVFGISAVGMAAMLFI----------PMLNDVLFLATVALVFFTW-GGTISLFPSLVSDIFGPANSAANYGFLYTA 339 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHc----------ccchhHHHHHHHHHHHHHh-ccchhccHHHHHHHhhhhhhhhHhHHHHHH
Confidence 99888777777766554431 0011111112222222222 222344457788999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHH
Q psy10231 516 GYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAM 551 (607)
Q Consensus 516 ~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 551 (607)
..++..++|.+.|.+.+..|+...|.+.+++++++.
T Consensus 340 ~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 340 KAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999888888777666543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=265.16 Aligned_cols=369 Identities=13% Similarity=0.083 Sum_probs=240.3
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc----chhHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK----GFTLL 118 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~----~~~~l 118 (607)
.+...|.+.+ + |++..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++++ +++.+
T Consensus 48 ~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 123 (452)
T ss_pred HHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 3456788776 7 99999999999999999999999999999999999999999999999999888763 78889
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHH-HHHHHhhhh----hHHHHHHHhHHHHHHHHHH
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVL-IVYSLGYIV----TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~-ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~ 192 (607)
++.|++.|++.+...+ ....+.|++|+++|++++++++.+.++|.. .+++++..+ +||+.|++.+++.++..+.
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 888999999999999999999999998864 455543222 8999999888776665442
Q ss_pred -HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHH
Q psy10231 193 -MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSL 271 (607)
Q Consensus 193 -~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~ 271 (607)
.+++||+|+...
T Consensus 204 ~~~~~~~~~~~~~------------------------------------------------------------------- 216 (452)
T PRK11273 204 AFAMMRDTPQSCG------------------------------------------------------------------- 216 (452)
T ss_pred HHHHccCCHhhcC-------------------------------------------------------------------
Confidence 233444432100
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhh
Q psy10231 272 GVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351 (607)
Q Consensus 272 g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (607)
.+ +.++.++.. .+.+ +.++++
T Consensus 217 -------------------------------------------~~-~~~~~~~~~---~~~~------------~~~~~~ 237 (452)
T PRK11273 217 -------------------------------------------LP-PIEEYKNDY---PDDY------------NEKHEQ 237 (452)
T ss_pred -------------------------------------------CC-Chhhhhhcc---cccc------------ccccCC
Confidence 00 000000000 0000 000000
Q ss_pred cCCccchh-hhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHh
Q psy10231 352 AGSSMDHC-AQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSAC 428 (607)
Q Consensus 352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l 428 (607)
+....+.+ ...++++..|...+...+ .....+....|.|.++++ .|++.. ......+..+..+++.++.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l 312 (452)
T PRK11273 238 ELTAKQIFMQYVLPNKLLWYIAIANVF-----VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 312 (452)
T ss_pred CccHHHHHHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011 124455544432222221 122346677899999976 466533 4555667778888999999999
Q ss_pred hccc--CCchhHH-HhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccch
Q psy10231 429 IQMF--SRRALAT-TSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVR 505 (607)
Q Consensus 429 ~d~~--grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 505 (607)
+||+ +||.... ....+..++.+.+.. .+ ....+.........+.. ..+.......++.|.+|++.|
T Consensus 313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~---~~-------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~ 381 (452)
T PRK11273 313 SDKVFRGNRGATGVFFMTLVTIATIVYWL---NP-------AGNPTVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAA 381 (452)
T ss_pred HHHHccCCcchHHHHHHHHHHHHHHHHHH---hc-------ccChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhh
Confidence 9998 4444322 211222222221111 00 01112222222222221 112222233567799999999
Q ss_pred hhHHHHHHHHHHHHHHH-HhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 506 GIMGGIVCSLGYLFIFT-TVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 506 ~~~~g~~~~~~~~~~~i-~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
|++.|+.+...++++.+ +|.+.|.+.|..|+...|++.+..++++.+....+
T Consensus 382 g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 382 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 79999999999999989988888877777665544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=252.94 Aligned_cols=353 Identities=15% Similarity=0.174 Sum_probs=245.3
Q ss_pred HHhhhcccccccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII 109 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~ 109 (607)
...++..+..++..+.+|. +.+ |+|.|..+.|++.+.+.+++.+++++.|+++||+|||++++.+.+...++.+..
T Consensus 22 ~~~~~~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (392)
T PRK12382 22 FAVFLTYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY 98 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 3344444445555666664 456 899999999999999999999999999999999999999999988877765433
Q ss_pred H---h-----ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHH
Q psy10231 110 T---V-----SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQ 176 (607)
Q Consensus 110 a---~-----a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr 176 (607)
. . .+|++.++++|+++|++.+...+ ..+++.|+.|+++|++++++.+.+..+|..+++.+++.+ +||
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (392)
T PRK12382 99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA 178 (392)
T ss_pred HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 2 2 35789999999999999999999 999999999999999999999999999999999988766 888
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCC
Q psy10231 177 YTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPN 256 (607)
Q Consensus 177 ~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~ 256 (607)
+.+.+..+..++...
T Consensus 179 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 193 (392)
T PRK12382 179 ALALTTMVLPLLAWA----------------------------------------------------------------- 193 (392)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 876655444333222
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhh
Q psy10231 257 DRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVA 336 (607)
Q Consensus 257 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~ 336 (607)
.....||.+. ++++.
T Consensus 194 ---------------------------------------------~~~~~~~~~~---~~~~~----------------- 208 (392)
T PRK12382 194 ---------------------------------------------FNGTVRKVPA---HAGER----------------- 208 (392)
T ss_pred ---------------------------------------------HHHhccCCCC---CcccC-----------------
Confidence 1111222110 00000
Q ss_pred hhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy10231 337 DAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAG 416 (607)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 416 (607)
. +.++.++ ..++..+..+ + ...+......+.+.++++.+.+ .........++
T Consensus 209 -~-------------------~~~~~~~--~~~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (392)
T PRK12382 209 -P-------------------SLWSVVG--LIWKPGLGLA-L----QGVGFAVIGTFVSLYFASKGWA-MAGFTLTAFGG 260 (392)
T ss_pred -c-------------------hHHHHHH--HHHHhHHHHH-H----HHHHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 0 0000010 0011111111 1 1112344556667777765553 23344455667
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhh
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMI 496 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (607)
+.+++.++.+++.||+|+|+.+..+..+..++.+.+... ...+.......+.+.+.+ ...+......
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~ 327 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------PTAWVALAGAALTGAGCS-LIFPALGVEV 327 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 778899999999999999999888777777766554431 112222222333332222 2234445677
Q ss_pred ccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 497 AELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 497 ~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
.|.+|++.|+++.|+.+...+++..++|.+.+.+.+..|+...+...+.+.+++.++.++.
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999999999999999999999888888777766544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=258.91 Aligned_cols=390 Identities=14% Similarity=0.057 Sum_probs=258.3
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS 112 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a 112 (607)
.++..++.....+.+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 95 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS 95 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777788888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHH
Q psy10231 113 KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVAL 187 (607)
Q Consensus 113 ~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~ 187 (607)
++++.++++|+++|++.+...+ ..+++.|++|+++|+++.++.....++|..+++.+++.+ +||+.|++..+...
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999998877 99999999888776
Q ss_pred HHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhh
Q psy10231 188 VGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGP 266 (607)
Q Consensus 188 ~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~ 266 (607)
+..+.. ...|+.+.. ..+.+ ..+...
T Consensus 176 l~~~~~~~~~~~~~~~---~~r~~--------------------------------------------------~~~~~~ 202 (471)
T PRK10504 176 IGAIATLMLMPNYTMQ---TRRFD--------------------------------------------------LSGFLL 202 (471)
T ss_pred HHHHHHHHhCCCcccc---CCCCC--------------------------------------------------hHHHHH
Confidence 665543 334443210 00110 000000
Q ss_pred HHHHHHHHHHHH-H--HHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHH
Q psy10231 267 VFVSLGVLIVYS-L--GYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI 343 (607)
Q Consensus 267 ~~~~~g~~~~~~-~--~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (607)
. ..+...... . ....+|........+...+..+..+...|. +
T Consensus 203 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------------------------- 247 (471)
T PRK10504 203 L--AVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR------N--------------------------- 247 (471)
T ss_pred H--HHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh------c---------------------------
Confidence 0 000000000 0 001122211111111111111111111110 0
Q ss_pred HHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHH
Q psy10231 344 QQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFM 421 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~ 421 (607)
..+..-..++++++.++..+. ..++.. .+......+.|.+++. .|.+.. .........+..+++
T Consensus 248 ---------~~~~~~~~~l~~~~~~~~~l~-~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 313 (471)
T PRK10504 248 ---------NNRALFSLKLFRTRTFSLGLA-GSFAGR----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGM 313 (471)
T ss_pred ---------CCCCccCHHHhcccchHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 000011123566775544222 222221 2234556677877764 465433 455566666777778
Q ss_pred HHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccC
Q psy10231 422 AIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501 (607)
Q Consensus 422 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 501 (607)
.++.+++.||+|||+.+..+..+..+....+.... .....+.........+.+.+.. .+....+..+..|
T Consensus 314 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 383 (471)
T PRK10504 314 KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA---------LLGWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLP 383 (471)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---------ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC
Confidence 89999999999999998888776766655544311 0111111112222222222222 3344577788999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhH
Q psy10231 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMG 537 (607)
Q Consensus 502 ~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~ 537 (607)
++.++.+.|+.++...+|..+++.+.+.+.+..++.
T Consensus 384 ~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 384 DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998877653
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=251.97 Aligned_cols=361 Identities=15% Similarity=0.114 Sum_probs=251.8
Q ss_pred HHHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH
Q psy10231 30 IGKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII 109 (607)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~ 109 (607)
....++.+.......+.+|.+.+ |+|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 34445566666677788899988 999999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHH
Q psy10231 110 TVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAV 184 (607)
Q Consensus 110 a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~ 184 (607)
++++|++.+++.|+++|++.+...+ ...++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.++
T Consensus 86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 9999999999999999999999999 889999999999999999999999999999999888776 89999999888
Q ss_pred HHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 185 VALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 185 ~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
+.++..+.
T Consensus 166 ~~~~~~~~------------------------------------------------------------------------ 173 (382)
T PRK10091 166 FNIAVLAS------------------------------------------------------------------------ 173 (382)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 76665442
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
..+++||.++ +.+ .+.+
T Consensus 174 -------------------------------------~~~~lp~~~~----~~~-~~~~--------------------- 190 (382)
T PRK10091 174 -------------------------------------IYFWVPDIRD----EAK-GGLR--------------------- 190 (382)
T ss_pred -------------------------------------HHHhCCCCCc----ccc-cCHH---------------------
Confidence 2233444321 000 0000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~ 422 (607)
...+.+++++.+... ... +....+.+....|.+.++.+ .|.+.+ ........++..+++.
T Consensus 191 -------------~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~ 252 (382)
T PRK10091 191 -------------EQFHFLRSPAPWLIF-AAT----MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN 252 (382)
T ss_pred -------------HHHHHhcChHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 001123344322211 111 11112233334455555543 466543 5566777888899999
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
++.+++.||+++|+.+..+..+.+++.+.+.... +..+...........+......+.......+..|.
T Consensus 253 ~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (382)
T PRK10091 253 LLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-----------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG 321 (382)
T ss_pred HHHheeccccCchhHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 9999999999999988877776666654443210 11122222222222222222222222344455555
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 503 SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL-LNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 503 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
+.++.+ ..+...++|..++|.+.|.+.+. .++...+...++++.+.......+.+
T Consensus 322 ~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 322 ELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 555544 44677889999999999999985 57877787777666666555544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=259.11 Aligned_cols=362 Identities=11% Similarity=0.065 Sum_probs=230.0
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchh
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~ 116 (607)
.++....++..|.+.+ ++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++
T Consensus 49 ~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~ 125 (476)
T PLN00028 49 FVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT 125 (476)
T ss_pred HHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3333345667788888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhh-------------hhHHHHHHHhH
Q psy10231 117 LLCVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI-------------VTWQYTSAACA 183 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~-------------l~Wr~~f~~~~ 183 (607)
.++++|+++|++.+...+...++.|++|+++|+++.++.....++|..+++.+... .+||+.|++.+
T Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 99999999999988754466789999999999999999876666666655443321 26888888777
Q ss_pred HHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccc
Q psy10231 184 VVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSA 263 (607)
Q Consensus 184 ~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~ 263 (607)
++.++..+..+
T Consensus 206 ~l~l~~~l~~~--------------------------------------------------------------------- 216 (476)
T PLN00028 206 LLHIIMGILVL--------------------------------------------------------------------- 216 (476)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 77665544221
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHH
Q psy10231 264 FGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI 343 (607)
Q Consensus 264 ~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (607)
++.++.|. ++.++.+ ++.+.
T Consensus 217 ----------------------------------------~~~~~~p~-----~~~~~~~-------~~~~~-------- 236 (476)
T PLN00028 217 ----------------------------------------TLGQDLPD-----GNYRELK-------KSGTM-------- 236 (476)
T ss_pred ----------------------------------------HHcCcCCC-----CchhhHH-------hcCcc--------
Confidence 11122221 0000000 00000
Q ss_pred HHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHH
Q psy10231 344 QQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFM 421 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~ 421 (607)
++.+....+++.+++++.|...+ . ++...........+.|.++.+ .|.+.. +.....+..+.++++
T Consensus 237 -------~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig 304 (476)
T PLN00028 237 -------PKDSFSKVLRYGVTNYRTWILAL-T----YGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFA 304 (476)
T ss_pred -------ccccHHHHHHHHHcCchhHHHHH-H----HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00000112344556665443211 1 111222234556677887754 477543 566777788999999
Q ss_pred HHHHhHhhcccCCch-------hHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhh
Q psy10231 422 AIIGSACIQMFSRRA-------LATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWV 494 (607)
Q Consensus 422 ~~~~g~l~d~~grr~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (607)
.+++|+++||++||+ .......+.++..+.+.. ....+......+++..+... ..+..+.
T Consensus 305 ~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 371 (476)
T PLN00028 305 RPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR------------ANSLGAAIVVMILFSIFVQA-ACGATFG 371 (476)
T ss_pred HhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc------------cchHHHHHHHHHHHHHHHHH-hhhhhcc
Confidence 999999999998652 111111111111111111 01112222222222222222 2233445
Q ss_pred hhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 495 MIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 495 ~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+..+..| +.++++.|+.+..+++|+.+++.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 372 ~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 372 IVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 6667655 68999999998888888888776654 1123457778888887777776665443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=253.55 Aligned_cols=362 Identities=16% Similarity=0.153 Sum_probs=245.2
Q ss_pred hccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccc
Q psy10231 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG 114 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~ 114 (607)
..+++....+...|.+.+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 104 (398)
T TIGR00895 28 MDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN 104 (398)
T ss_pred HHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc
Confidence 345555666778888888 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVG 189 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~ 189 (607)
++.+++.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|..+++.+++.+ +||+.|++.++..++.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999988776 8999998886555544
Q ss_pred HHH-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHH
Q psy10231 190 FAA-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVF 268 (607)
Q Consensus 190 ~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~ 268 (607)
.+. ..++||++
T Consensus 185 ~~~~~~~~~~~~-------------------------------------------------------------------- 196 (398)
T TIGR00895 185 LLLLMRFLPESI-------------------------------------------------------------------- 196 (398)
T ss_pred HHHHHHhCCCCC--------------------------------------------------------------------
Confidence 432 23344444
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhh-hhHHHHHHHHH
Q psy10231 269 VSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVA-DAELKEIQQSL 347 (607)
Q Consensus 269 ~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 347 (607)
++..++ +.++.++..++........ +++.++
T Consensus 197 ------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 228 (398)
T TIGR00895 197 ------------------------------------------DFLVSK-RPETVRRIVNAIAPQMQAEAQSALPE----- 228 (398)
T ss_pred ------------------------------------------hHHHhc-CHHHHHHHHHHHHHhccccccccccc-----
Confidence 332222 1111111111111000000 000000
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHh
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGS 426 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g 426 (607)
++.+.+..++..+.+++++..+...... +..+......+....+.|.+.++.+.+.+ .........++.+++.++.+
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 229 -QKATQGTKRSVFKALFQGKTARITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred -cccccchhhHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011112222222222222222222 22223334456667788877777676543 45667777888999999999
Q ss_pred HhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchh
Q psy10231 427 ACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRG 506 (607)
Q Consensus 427 ~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 506 (607)
++.||++||+..... ....+...++... . ...+......++.+.+.+ ...+..+++..|.+|++.|+
T Consensus 307 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g 373 (398)
T TIGR00895 307 WLADRLGPRVTALLL-LLGAVFAVLVGST--L---------FSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRA 373 (398)
T ss_pred HHHhhcchHHHHHHH-HHHHHHHHHHHHH--h---------hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHH
Confidence 999999998444333 3333322222210 0 122223333333333333 33466678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 507 IMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 507 ~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
++.|+.+.+.+++..++|.+.|.+
T Consensus 374 ~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 374 TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999988864
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=246.76 Aligned_cols=340 Identities=15% Similarity=0.144 Sum_probs=239.4
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R 122 (607)
....+|.+.+ ++|.++.+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++++|++.+++.|
T Consensus 39 ~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 115 (394)
T PRK10213 39 PVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR 115 (394)
T ss_pred HHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 3456777777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCC
Q psy10231 123 FITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVP 197 (607)
Q Consensus 123 ~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~p 197 (607)
+++|++.+...+ ..+++.|++|+++|+++.++...+.++|..++|.+++.+ +||+.|++.+++.++..+.
T Consensus 116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~----- 190 (394)
T PRK10213 116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW----- 190 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH-----
Confidence 999999999999 999999999999999999999999999999999999877 9999999887666554331
Q ss_pred CChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHH
Q psy10231 198 ETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 277 (607)
Q Consensus 198 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~ 277 (607)
T Consensus 191 -------------------------------------------------------------------------------- 190 (394)
T PRK10213 191 -------------------------------------------------------------------------------- 190 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccc
Q psy10231 278 SLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMD 357 (607)
Q Consensus 278 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (607)
.....||+|+. + ++ ...
T Consensus 191 ------------------------~~~~~p~~~~~-----~-~~---------------------------------~~~ 207 (394)
T PRK10213 191 ------------------------IIKSLPSLPGE-----P-SH---------------------------------QKQ 207 (394)
T ss_pred ------------------------HHHHCCCCCcc-----c-cc---------------------------------chh
Confidence 22233443210 0 00 000
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCc
Q psy10231 358 HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYA-VNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRR 435 (607)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr 435 (607)
+.++.+++|..+..... . +....+.+....+. |.+.++.|.+.+ ........+++.+++.++.+++.||.++
T Consensus 208 ~~~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~- 281 (394)
T PRK10213 208 NTFRLLQRPGVMAGMIA-I----FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK- 281 (394)
T ss_pred HHHHHhcCHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 12234555544432221 1 11112233344454 666666677554 4556777788899999999999999644
Q ss_pred hhHHHhhHHHHHH-HHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHH
Q psy10231 436 ALATTSAFFMALS-MGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCS 514 (607)
Q Consensus 436 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 514 (607)
+.+..+..+..+. .++... . ...+.......+.+.++.. ..+...+++.+..| +.++.+.+....
T Consensus 282 ~~l~~~~~~~~~~~~~l~~~---~---------~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 347 (394)
T PRK10213 282 LALAGAPLVLAVSALVLTLW---G---------SDKIVATGVAIIWGLTFAL-VPVGWSTWITRSLA-DQAEKAGSIQVA 347 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHH---h---------hhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHCc-ccHHHHHHHHHH
Confidence 4433333332222 222221 0 1223333333333333332 23434456677777 446677788888
Q ss_pred HHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 515 LGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 515 ~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
..+++..+++.+.|.+.+..|+...+...+.+.++..+.
T Consensus 348 ~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 348 VIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 889999999999999999988877776666555544433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.68 Aligned_cols=379 Identities=11% Similarity=0.021 Sum_probs=260.1
Q ss_pred CCCCCccccccCcchhHHHhhhccccccccccccccccCCCcccccCccc-----hhHHHHHHHHHhhHhhhHHHHhhhh
Q psy10231 14 QKPSSIISISSDDASWIGKLHCNNLTHAIPSILIPQLQKPSSIISISSDD-----ASWIASLGVISTPVGSLFAGIFMDL 88 (607)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~-----~~~i~s~~~l~~~i~~~~~g~l~Dr 88 (607)
.+++++.+++++........++.++..+...+.+|.+.+ ++|.+..+ .+++.+.+.++..+++++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr 80 (408)
T PRK09874 4 CENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR 80 (408)
T ss_pred CcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555554443333333344556666667778888887 88888665 4889999999999999999999999
Q ss_pred hcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHH
Q psy10231 89 LGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 89 ~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~ 167 (607)
+|||+++..+.++..++.+++++++|++.+++.|++.|++.+ ..+ ...++.|.+++++|+++.++...+..+|..+++
T Consensus 81 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (408)
T PRK09874 81 KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGP 159 (408)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865 457 888999999999999999999999999999999
Q ss_pred HHhhhh----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhh
Q psy10231 168 SLGYIV----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSS 243 (607)
Q Consensus 168 ~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 243 (607)
.+++.+ +||+.|++.++..++..+.
T Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 188 (408)
T PRK09874 160 LAGGLLADSYGLRPVFFITASVLFLCFLV--------------------------------------------------- 188 (408)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 888876 8999999888776655442
Q ss_pred hHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHH
Q psy10231 244 ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEAR 323 (607)
Q Consensus 244 ~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~ 323 (607)
..+.++|.++. .+.++..
T Consensus 189 ----------------------------------------------------------~~~~~~~~~~~----~~~~~~~ 206 (408)
T PRK09874 189 ----------------------------------------------------------TLFCIRENFQP----VSKKEML 206 (408)
T ss_pred ----------------------------------------------------------HHHHhccCccc----ccchhhh
Confidence 22223332110 0000000
Q ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC
Q psy10231 324 NSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGS 403 (607)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 403 (607)
+ .++..+.+++++.+........+.. ........+.+.+..+.+.
T Consensus 207 ---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 251 (408)
T PRK09874 207 ---------------H----------------MREVVTSLKNPKLVLSLFVTTLIIQ----VATGSIAPILTLYVRELAG 251 (408)
T ss_pred ---------------H----------------HHHHHHhCcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 0 0001123445544432222222111 1123334445555554322
Q ss_pred C-cc----hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHH
Q psy10231 404 S-LD----DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACIL 478 (607)
Q Consensus 404 ~-~~----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (607)
+ .+ ......+.++..+++.+..+++.||++||+.+..+.....+..+..... ...+.......
T Consensus 252 ~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 319 (408)
T PRK09874 252 NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------------QTPLQLGILRF 319 (408)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHH
Confidence 1 21 1233444567777888899999999999998887776665555443321 11222222222
Q ss_pred HHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 479 ANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+.+.+. ....+....+..+..|++.|++..++.+.+..+|..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 320 ~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 320 LLGAAD-GALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHhhh-HhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 222222 223455556677888989999999999999999999999999999999999999999988888887776554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=253.21 Aligned_cols=354 Identities=10% Similarity=0.093 Sum_probs=252.7
Q ss_pred HhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 32 KLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
.+++.+.+....+..+|.+.+ ++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++..++.+++++
T Consensus 15 ~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~ 91 (394)
T PRK03699 15 SYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF 91 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677888899988 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVV 185 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~ 185 (607)
++|++.+++.|+++|++.+...+ ...++.|++|+++|++..+.......+|..++|.+.+.+ +||+.|++.+++
T Consensus 92 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~ 171 (394)
T PRK03699 92 SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLV 171 (394)
T ss_pred cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999998888888888888776654 899999887777
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
.++..+..
T Consensus 172 ~~~~~~~~------------------------------------------------------------------------ 179 (394)
T PRK03699 172 YVAIFILT------------------------------------------------------------------------ 179 (394)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 66554411
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
.....||.+ +++.+ +
T Consensus 180 ------------------------------------~~~~~p~~~-----~~~~~-----------~------------- 194 (394)
T PRK03699 180 ------------------------------------LFSEFPALG-----KHAPK-----------A------------- 194 (394)
T ss_pred ------------------------------------HhcCCcccc-----ccCcc-----------c-------------
Confidence 111111100 00000 0
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAI 423 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~ 423 (607)
+.+. .++.+ ++ .+ ....+..+......+.+..|.|.++++ .|.+.. .........+...++.+
T Consensus 195 ------~~~~---~~~~~-~~----~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~ 259 (394)
T PRK03699 195 ------DKPV---AKEKW-GI----GV-LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMW 259 (394)
T ss_pred ------cCcc---ccccC-Ch----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHH
Confidence 0000 00000 11 11 122222223333456778899999965 476543 45566677788899999
Q ss_pred HHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 424 IGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 424 ~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
+.+++.||+++|+.+.....+..+....+.. . ...+......+..+. ...+..+....+..|..|.
T Consensus 260 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~- 325 (394)
T PRK03699 260 IFSFIVRFFDLQRILTVLAGLALVLMYLFVN---T---------DDPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKV- 325 (394)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHH---c---------CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccC-
Confidence 9999999999999887766555544433322 0 112222222222222 2223344455566676664
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy10231 504 VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 504 ~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 554 (607)
.++...+......++|..++|.+.|.+.+..|++..++..+++.+++.+..
T Consensus 326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 457788999999999999999999999999999888888877777665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=255.11 Aligned_cols=378 Identities=14% Similarity=0.122 Sum_probs=248.8
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc----cchhHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS----KGFTLL 118 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a----~~~~~l 118 (607)
.....|.+++ +|+++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+
T Consensus 46 ~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 121 (438)
T TIGR00712 46 FALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIM 121 (438)
T ss_pred HHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHH
Confidence 3455676654 48999999999999999999999999999999999999999999999998888765 467788
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHH
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~ 192 (607)
.+.|++.|++.+...+ ...++.|++|+++|++++++.+.+.++|..+++.+.... +||+.|++.+++.++..+.
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999999999999999999998887665432 8999999988887775542
Q ss_pred -HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHH
Q psy10231 193 -MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSL 271 (607)
Q Consensus 193 -~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~ 271 (607)
.+++||+|+....+
T Consensus 202 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 216 (438)
T TIGR00712 202 AFAMMRDTPQSCGLP----------------------------------------------------------------- 216 (438)
T ss_pred HHHhccCCHHhcCCC-----------------------------------------------------------------
Confidence 23445544321000
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhh
Q psy10231 272 GVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351 (607)
Q Consensus 272 g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (607)
+.++. +++...... ++ +++
T Consensus 217 ----------------------------------------------~~~~~-------~~~~~~~~~------~~--~~~ 235 (438)
T TIGR00712 217 ----------------------------------------------PIEEY-------RNDYPDDYN------EK--AEQ 235 (438)
T ss_pred ----------------------------------------------Cchhc-------ccccccccc------cc--ccc
Confidence 00000 000000000 00 000
Q ss_pred cCCccc-hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHHHHHHHhHh
Q psy10231 352 AGSSMD-HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSLD-DYVASIIVAGLRFFMAIIGSAC 428 (607)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~g~l 428 (607)
+.+..+ .....++++..+...+... +.....+.+..|.|.++++. |.+.. ......+..+.++++.++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 310 (438)
T TIGR00712 236 ELTAKEIFMQYVLPNKLLWYIAIANV-----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 310 (438)
T ss_pred ccchHHHHHHHHccCchHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0113455664443222212 22233466778999999863 65443 5566777888899999999999
Q ss_pred hcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhH
Q psy10231 429 IQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIM 508 (607)
Q Consensus 429 ~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 508 (607)
.||+++++....+.....+..+...... .. +....+.........+. ...+..........|.+|++.|+++
T Consensus 311 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~ 382 (438)
T TIGR00712 311 SDKVFKGNRGATGVFFMTLVTIAVIVYW-MN------PAGNPLVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTA 382 (438)
T ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHH-hc------CCCchHHHHHHHHHHHH-HHccHHHHHHHHHHHhcChhheeee
Confidence 9999654322222222211111111100 00 01112222221222111 1122222222457799999999999
Q ss_pred HHHHHHHHHHHH-HHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 509 GGIVCSLGYLFI-FTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 509 ~g~~~~~~~~~~-~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.|+.+..+++++ .++|.+.|.+.++.|+...+.+..++.+++.+...+.+||.|+
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999998875 6899999999999999989888888888888887777777653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=256.57 Aligned_cols=393 Identities=11% Similarity=0.094 Sum_probs=264.6
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...+...++.....+.+|.+.+ ++|.+..+.+|+.+.+.++..++.++.|+++||+|||++++.+.++..+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 3445567788888889999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHH
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVV 185 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~ 185 (607)
+++|++.++++|+++|++.+...+ ..+++.|++|+++|+++.+++..+..+|..+++.+++.+ +||+.|++.+++
T Consensus 86 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~ 165 (485)
T TIGR00711 86 VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPI 165 (485)
T ss_pred CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHH
Confidence 999999999999999999999999 999999999999999999999999999999999999877 999999999888
Q ss_pred HHHHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 186 ALVGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 186 ~~~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
+++..++. +.+||.++. +.++.|..... + .........+..+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~-----------------l----~~~~~~~~~~~~~~~~~--------- 212 (485)
T TIGR00711 166 GIIVVVVAFFILPRDKPA---ASENFDFLGLL-----------------L----LSVGLGSLLYGLSEGPE--------- 212 (485)
T ss_pred HHHHHHHHHHHcCCcccc---ccCCCcHHHHH-----------------H----HHHHHHHHHHHHhhCCC---------
Confidence 77766554 456764321 00111000000 0 00000001111111000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHH-Hhhh-HHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYT-SAAC-AVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE 342 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~-~~~~-~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (607)
.+|... .... .+.+.+.+ ..+...|
T Consensus 213 ------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------- 239 (485)
T TIGR00711 213 ------------------RGWFDSNEILILSITGLVAI-IAFVVWE---------------------------------- 239 (485)
T ss_pred ------------------CCCCCchHHHHHHHHHHHHH-HHHHHHH----------------------------------
Confidence 011100 0000 00000000 0000000
Q ss_pred HHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHH
Q psy10231 343 IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFF 420 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~ 420 (607)
...+......+.+++++++...+..+.. ....+....+.|.++++ .|.+. +.+.......++.++
T Consensus 240 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~ 306 (485)
T TIGR00711 240 --------LTDDNPLVDLRLFKYRNFTIGCVYMSLL-----GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPML 306 (485)
T ss_pred --------HcCCCCccCHHHHcCCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0000111123466677655433222222 22345666788888876 46654 356677777888999
Q ss_pred HHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc
Q psy10231 421 MAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF 500 (607)
Q Consensus 421 ~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 500 (607)
+.++.+++.||++||+.+..+..+.+++...+.... ..+...+.......+.+.+.+....+ ......+..
T Consensus 307 ~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~g~~~~~~~-~~~~~~~~~ 377 (485)
T TIGR00711 307 SSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF--------TPDTPFLAIALPQFIRGFGMGCFFMP-LTTIALSGL 377 (485)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 999999999999999998888777777666554211 11122222233333333333332223 335566778
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh
Q psy10231 501 PLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL 534 (607)
Q Consensus 501 p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 534 (607)
|++.|+++.|+.+...++|+.+++.+.+.+.++.
T Consensus 378 ~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 378 PPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=241.40 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=243.8
Q ss_pred cccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc-----cch
Q psy10231 41 AIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-----KGF 115 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-----~~~ 115 (607)
.+.+++.+.+.+. ++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+++++++ +|+
T Consensus 51 ~~~~~l~~~~~~~--~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~ 128 (462)
T PRK15034 51 MLFSAVTVNLNKI--GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPF 128 (462)
T ss_pred HHHHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCH
Confidence 3456666776542 799999999999999999999999999999999999999999999999999999987 899
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---------hHHHHHHHhHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---------TWQYTSAACAVV 185 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---------~Wr~~f~~~~~~ 185 (607)
+.+++.|++.|++ +..++ ....+++++|+++||+++++.....++|..+++.+...+ +|+....
T Consensus 129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~----- 202 (462)
T PRK15034 129 GIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ----- 202 (462)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc-----
Confidence 9999999999998 66778 999999999999999999999777777776665554321 0000000
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
T Consensus 203 -------------------------------------------------------------------------------- 202 (462)
T PRK15034 203 -------------------------------------------------------------------------------- 202 (462)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhh-hccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAA-MHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
..+...+||....+-.++.++..+. ++..++.|. .
T Consensus 203 ------------~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~----------------------------- 238 (462)
T PRK15034 203 ------------ADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---S----------------------------- 238 (462)
T ss_pred ------------cccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---c-----------------------------
Confidence 0011233444444333333333223 223333221 0
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAI 423 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 423 (607)
+....+..+.+|+|+.|...++ .++.+.++..+..+.|.+.++ .++.. ......+..+...+..+
T Consensus 239 --------~~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rp 304 (462)
T PRK15034 239 --------RASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARS 304 (462)
T ss_pred --------ccCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHH
Confidence 0011233456778877653222 234444566777788888866 33222 23334455677888999
Q ss_pred HHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc-
Q psy10231 424 IGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL- 502 (607)
Q Consensus 424 ~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~- 502 (607)
++|+++||+|+|+++..+.+.+.+....+.... +.. ...+.+......+......+.+. ...+.++.+.+|+
T Consensus 305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~----~~~~~~~~~~~~~~l~~~~G~gn-gsvfk~ip~~f~~~ 377 (462)
T PRK15034 305 VGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGT----GSGNFIAFYAVFMGLFLTAGLGS-GSTFQMIAVIFRQI 377 (462)
T ss_pred hhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--ccc----cccHHHHHHHHHHHHHHHhcccc-hHHHHhhHHHHhhh
Confidence 999999999999999888876666654332211 110 00111222222222223333332 3345677777874
Q ss_pred --------------------cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 503 --------------------SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 503 --------------------~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
++-|.+.|+....+.+|+++.|.+.+...+..| +...++.+.+..+++.++.+.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 378 TIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 146889999999999999999999998888765 55567777777777777776653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=253.24 Aligned_cols=363 Identities=16% Similarity=0.106 Sum_probs=244.3
Q ss_pred hccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccc
Q psy10231 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG 114 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~ 114 (607)
+..++....+...|.+.+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred HHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 344566667788898888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHH-HHhhhh----hHHHHHHHhHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY-SLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~-~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
++.+++.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|..+++ .++..+ +||+.|++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999 455444 899999988877666
Q ss_pred HHHH-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 189 GFAA-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 189 ~~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
..+. .++.||+|+....+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 185 (379)
T TIGR00881 163 VSLICFLLLRDSPQSCGLPPAEE--------------------------------------------------------- 185 (379)
T ss_pred HHHHHheeeCCCccccccCcccc---------------------------------------------------------
Confidence 5443 234454432110000000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSL 347 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (607)
.+.++ .+ .+. +.
T Consensus 186 -------------------------------------------------~~~~~----------~~--~~~-------~~ 197 (379)
T TIGR00881 186 -------------------------------------------------MPNEE----------PD--GDA-------EK 197 (379)
T ss_pred -------------------------------------------------Ccccc----------cc--ccc-------cc
Confidence 00000 00 000 00
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHHHH
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAIIG 425 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~ 425 (607)
++++........++.++++..+...+.. +...........+.|.++++ .+.+. +.........+..+++.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 272 (379)
T TIGR00881 198 KEEELTKKQIFLQYVLLNKVLWYISLGY-----VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLA 272 (379)
T ss_pred ccccccchHHHHHHHHhcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHH
Confidence 0000011112334556666544322221 12222345667778888764 46654 35566777788889999999
Q ss_pred hHhhcccCC-chhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc
Q psy10231 426 SACIQMFSR-RALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 426 g~l~d~~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
+++.||..+ |+.... ..........+...... .....+......... .....+..+....+..|.+|++.
T Consensus 273 g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 343 (379)
T TIGR00881 273 GWLSDKLFNGRRGPLA-VFFMALIIVSLLVYWLN-------PAANPLMDLICLFAL-GFLVYGPQMLIGVIASELAPKKA 343 (379)
T ss_pred HHHHHHHcCCcchHHH-HHHHHHHHHHHHHHhcC-------cchhHHHHHHHHHHH-HHHHhhhhHHHHHHHHHhcCcch
Confidence 999998643 332222 11111111111111000 001111222222222 22223333444577899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHH
Q psy10231 505 RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGM 539 (607)
Q Consensus 505 r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~ 539 (607)
|+++.|+.+...+++..++|.+.|.+.+..|+...
T Consensus 344 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 344 AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 99999999999999999999999999998887643
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=257.29 Aligned_cols=366 Identities=12% Similarity=0.088 Sum_probs=242.3
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHH-H
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCV-G 121 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~-~ 121 (607)
.+...|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.+++++++|++.+++ .
T Consensus 38 ~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 38 VTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4556777777 99999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhc-
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHA- 195 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~- 195 (607)
|+++|++.+...+ ...++.++++ ++|+++.++...+..+|..+++.+++.+ |||+.|++.+++.++..+..++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999998777 8888899885 7899999999999999999998888766 8999999998887765543221
Q ss_pred CCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHH
Q psy10231 196 VPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLI 275 (607)
Q Consensus 196 ~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~ 275 (607)
.|+.++.
T Consensus 194 ~~~~~~~------------------------------------------------------------------------- 200 (455)
T TIGR00892 194 RPVGPSQ------------------------------------------------------------------------- 200 (455)
T ss_pred CCCCccc-------------------------------------------------------------------------
Confidence 1211100
Q ss_pred HHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCc
Q psy10231 276 VYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSS 355 (607)
Q Consensus 276 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (607)
. +.+.+ ..+ ...+++. .+ +.+. .... +...
T Consensus 201 -----------------------------------~----~~~~~-~~~---~~~~~~~-~~-~~~~----~~~~-~~~~ 230 (455)
T TIGR00892 201 -----------------------------------R----VSKSK-SKE---GLPPDGS-TK-KLSK----KSTA-EKIN 230 (455)
T ss_pred -----------------------------------c----ccccc-ccc---cCCCCCc-cc-cccc----cchh-hhhh
Confidence 0 00000 000 0000000 00 0000 0000 0000
Q ss_pred cchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhccc--
Q psy10231 356 MDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMF-- 432 (607)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~-- 432 (607)
.....+.++++.++..... . +....+.+....+.+.+.++.|.+.. ......+.+++.+++.++.+++.||.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~-~----~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~ 305 (455)
T TIGR00892 231 RFLDFSLFTHRGFLVYLSG-N----VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWI 305 (455)
T ss_pred hhcchHHhcCchHHHHHHH-H----HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111245666654432221 1 11222344556677888877776543 45666777888889999999999973
Q ss_pred CCchhHHHhh--HHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHH
Q psy10231 433 SRRALATTSA--FFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGG 510 (607)
Q Consensus 433 grr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 510 (607)
++|+...... +..+++.+.... . ...+..+...++++...+ ...+....++.|.+|++.++++.|
T Consensus 306 ~~~~~~~~~~~~~~~~l~~ll~~~---~---------~~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g 372 (455)
T TIGR00892 306 RPHVQYLFSFALLFNGLTHLLCAL---A---------GDYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVG 372 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---h---------chHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHh
Confidence 3333333222 222222222211 0 122233333333333322 334555678889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q psy10231 511 IVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 511 ~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~ 553 (607)
+.+...+++..++|.+.|.+.+..+ +...|++.+++.+++.+.
T Consensus 373 ~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 373 LVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999999999998874 777777777766665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=241.95 Aligned_cols=351 Identities=12% Similarity=0.003 Sum_probs=251.4
Q ss_pred HHHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH
Q psy10231 30 IGKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII 109 (607)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~ 109 (607)
+...++.+++.+...+.+|.+.+ ++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~ 88 (381)
T PRK03633 12 LCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGL 88 (381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888899999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-h--HHHHHHHhHHH
Q psy10231 110 TVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-T--WQYTSAACAVV 185 (607)
Q Consensus 110 a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~--Wr~~f~~~~~~ 185 (607)
++++|++.++++|+++|++.+...+ ....+.+..++++|+++++.+..+.++|..+|+.+++.+ . ++...+..+..
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 168 (381)
T PRK03633 89 GLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLV 168 (381)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 9999999999999999999999999 888888999999999999999999999999999998876 1 12222222111
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
......
T Consensus 169 ~~~~~~-------------------------------------------------------------------------- 174 (381)
T PRK03633 169 LAAILP-------------------------------------------------------------------------- 174 (381)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111100
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
......+|++ .+
T Consensus 175 -----------------------------------~~~~~~~~~~------~~--------------------------- 186 (381)
T PRK03633 175 -----------------------------------LLFTRILNQQ------AE--------------------------- 186 (381)
T ss_pred -----------------------------------HHHhcccCCC------CC---------------------------
Confidence 0111111110 00
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAII 424 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 424 (607)
++...+.++.++++..+.. ...+.... ........+.|.++++.|.+.+ .+.......+..+++.+.
T Consensus 187 -------~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 254 (381)
T PRK03633 187 -------NHDSTSIWPMLKLRQARLG-VNGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWP 254 (381)
T ss_pred -------CCCCCCHHHHHHhcchHHH-HHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 0001123345566654432 11111111 1234455678888877676543 455566777888999999
Q ss_pred HhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc
Q psy10231 425 GSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 425 ~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
.+++.||+++|+.+..+.....++.+.+.. . ........+++. ......|.....+.|..|++.
T Consensus 255 ~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-------------~--~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~ 318 (381)
T PRK03633 255 IGRLADRFGRLLVLRVQVFVVILGSIAMLS-------------Q--AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHE 318 (381)
T ss_pred hHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-------------h--HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHH
Confidence 999999999999888776666665543311 0 011111122222 222345666677889999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 505 RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 505 r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
++.+.+..+...++|..++|.+.|.+.|+.++...|.+.+.+.++..+.
T Consensus 319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999888888877777665544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=242.62 Aligned_cols=345 Identities=14% Similarity=0.042 Sum_probs=247.7
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS 112 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a 112 (607)
.++..+..+...+.+|.+.. +++.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888877 889999999999999999999999999999999999999999999999999888888
Q ss_pred c-----chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHh
Q psy10231 113 K-----GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAAC 182 (607)
Q Consensus 113 ~-----~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~ 182 (607)
+ |++.++++|+++|++.+...+ ..+++.|++|+++|+++.++...+..+|.++++.+++.+ +||+.|++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7 999999999999999999999 999999999999999999999999999999999998877 899999887
Q ss_pred HHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccccc
Q psy10231 183 AVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLS 262 (607)
Q Consensus 183 ~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~ 262 (607)
++..++..+..+
T Consensus 165 ~~~~~~~~~~~~-------------------------------------------------------------------- 176 (365)
T TIGR00900 165 AVGFAISALLIV-------------------------------------------------------------------- 176 (365)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 776655444211
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHH
Q psy10231 263 AFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE 342 (607)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (607)
....||.++ +++.+.. ++..++
T Consensus 177 ----------------------------------------~~~~~~~~~----~~~~~~~--------------~~~~~~ 198 (365)
T TIGR00900 177 ----------------------------------------SVRIPELAA----SEIQALS--------------NAVLRD 198 (365)
T ss_pred ----------------------------------------hcccccCCC----ccccccc--------------hhHHHH
Confidence 111222110 0000000 000000
Q ss_pred HHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHH-hCCCcc-hHHHHHHHHHHHH
Q psy10231 343 IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVL-YYAVNFFED-AGSSLD-DYVASIIVAGLRF 419 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~ 419 (607)
. .+.+++.++++..+........... ...... .+.|.+.++ .+.+.. .........++.+
T Consensus 199 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (365)
T TIGR00900 199 T------------REGIKFVLKNPLLRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGAL 261 (365)
T ss_pred H------------HhHHHHHHcCcHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 0 0123345556654432222221111 122233 667777765 465443 4566677788889
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++.++.+++.||.+||+.+..+....+++...+... . .+.+......++.+.+.. ...+....+..|.
T Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 329 (365)
T TIGR00900 262 LGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT----------P-PNFPLFLVLWFAIGVGYG-PINVPQGTLLQRR 329 (365)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------c-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 999999999999999998887766666655554431 0 112233333333333332 2345666889999
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh
Q psy10231 500 FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN 535 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g 535 (607)
.|++.|+++.|+.+...+++..+++.+.|.+.|..|
T Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 330 VPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999888643
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=238.62 Aligned_cols=363 Identities=11% Similarity=0.057 Sum_probs=239.8
Q ss_pred ccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH---h-
Q psy10231 36 NNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT---V- 111 (607)
Q Consensus 36 ~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a---~- 111 (607)
.....+.....+|.+.+ |+|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++++++. +
T Consensus 25 ~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~ 101 (402)
T TIGR00897 25 FMTGDGLEQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG 101 (402)
T ss_pred HHHhhhhHHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333334444555556 8899999999999999999999999999999999999999999999998877653 3
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHH-HHHHHHhhhh----hHHHHHHHhHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGV-LIVYSLGYIV----TWQYTSAACAVV 185 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~ig~~l~~~l----~Wr~~f~~~~~~ 185 (607)
.+|++.+++.|+++|+|.+...+ ..+++.+.+++++|++++++...+.++|. .+++.+++.+ +|+..++.....
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 35788999999999999998888 88899999999999999999999999997 5788887654 665554443332
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
.++..+.
T Consensus 182 ~~~~~~~------------------------------------------------------------------------- 188 (402)
T TIGR00897 182 VLTGGVI------------------------------------------------------------------------- 188 (402)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222111
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
..+..++.++- .++++.++ .++
T Consensus 189 ------------------------------------~~~~~~~~~~~-~~~~~~~~------------------~~~--- 210 (402)
T TIGR00897 189 ------------------------------------ALFSNKDIFTP-QHMQTREK------------------FSE--- 210 (402)
T ss_pred ------------------------------------HHhccCCCCCc-ccccCCcc------------------hhh---
Confidence 11112221100 00000000 000
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAII 424 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 424 (607)
..+.+++++++|+.+...+ ..+......+....|.|.+.++.|.+.. .........++..++.+.
T Consensus 211 ---------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~ 276 (402)
T TIGR00897 211 ---------LGKAATILFTNPNVLLGGM-----VRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVI 276 (402)
T ss_pred ---------HHHHHHHHHcChhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 0012334566665443221 1222333456778889999888777544 345556677889999999
Q ss_pred HhHhhcccCCchhHH-HhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 425 GSACIQMFSRRALAT-TSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 425 ~g~l~d~~grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
.|+++||++||+.+. .+.+...++.+.+...... .....+.........+.... +..+. .....|..| +
T Consensus 277 ~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~~-~ 346 (402)
T TIGR00897 277 FGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-------FGHSFAVALIIAIALGIFLA-GYVPL-AAVFPTLAP-K 346 (402)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc-------cCCcHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhCc-c
Confidence 999999999887654 2222233322222211000 00112222222323332222 22333 345567655 5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q psy10231 504 VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 504 ~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 556 (607)
.|+++.|+.+...+++..++|.+.+.+.+..|+...+++.+++.+++.++..+
T Consensus 347 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 347 HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998999888888777766554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=250.26 Aligned_cols=361 Identities=15% Similarity=0.103 Sum_probs=240.6
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc--cchhHHHHHHHHHhhhhhhHh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS--KGFTLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a--~~~~~l~~~R~l~G~g~g~~~ 133 (607)
|++.+..+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 788999999999999999999999999999999999999999999999998887554 678899999999999999999
Q ss_pred h-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhcc
Q psy10231 134 A-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207 (607)
Q Consensus 134 ~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~ 207 (607)
+ ...++.|++|+++|+++.++...+..+|.++++.+++.+ +||+.|++.++++++..++.
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~-------------- 215 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW-------------- 215 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH--------------
Confidence 9 999999999999999999999999999999999888765 78888888888776665522
Q ss_pred ccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHH
Q psy10231 208 MAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQY 287 (607)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~ 287 (607)
T Consensus 216 -------------------------------------------------------------------------------- 215 (465)
T TIGR00894 216 -------------------------------------------------------------------------------- 215 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhh-cCCccchhhhhhccC
Q psy10231 288 TSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM-AGSSMDHCAQTFTNS 366 (607)
Q Consensus 288 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 366 (607)
....+|+|+.. +...++.+ +.+++..++++ +.+....+++.++++
T Consensus 216 ---------------~~~~~~~p~~~--~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (465)
T TIGR00894 216 ---------------FVFPADDPSIH--PCISKFEK-----------------KYINSSLQGQKGSTRQSLPIKAIPKSL 261 (465)
T ss_pred ---------------HHHhcCCcccC--CCCCHHHH-----------------HHHHhhcccccCCCCCCCCHHHHhcCH
Confidence 22233443210 00000000 01111000000 111223466777766
Q ss_pred cchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHH---Hh
Q psy10231 367 AVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALAT---TS 441 (607)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~---~~ 441 (607)
..+. ..+..++...+.+.+..|.|.++++ .|.+.. .+....+..++.+++.++.|+++||+++|+... ..
T Consensus 262 ~~~~-----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~ 336 (465)
T TIGR00894 262 PVWA-----IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAAR 336 (465)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5443 2233334444567788899999865 466543 456666778888999999999999976442211 00
Q ss_pred hHHHHHHHHHHhhhh-hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHH
Q psy10231 442 AFFMALSMGISGTYE-YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFI 520 (607)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 520 (607)
.....++....+... .... .....+..+....+... ......+..+....|..|. .+|.+.|+.+..+.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~ 409 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPY-----LSAAFYLTIIILTLANA-VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGG 409 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHHHH-HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHH
Confidence 111111111100000 0000 00122222222222222 2222223333455677765 78999999999999999
Q ss_pred HHHhhhcHHHHHh---hhhHHHHHHHHHHHHHHHHHhhh
Q psy10231 521 FTTVKMYPDLMYL---LNMGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 521 ~i~~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 556 (607)
.++|.+.|.+.+. .+|...|.+.+++.+++.++..+
T Consensus 410 ~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 410 LIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999988764 34677888888777777666443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=239.21 Aligned_cols=357 Identities=11% Similarity=0.051 Sum_probs=242.5
Q ss_pred HHhhhcccccccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhh-hhhHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL-TAIPFIIGWTI 108 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~-~~~l~~~~~~~ 108 (607)
...++.++..+...+.+|. +.+ ++|.|..+.|++.+.+.++..+.+++.|+++||+||||.++. +.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 3445566666777777775 456 899999999999999999999999999999999999987654 56666778888
Q ss_pred HHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccc--cchhhHHHHHHHHHHHHHhhhh----hHHHHHHH
Q psy10231 109 ITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYL--SAFGPVFVSLGVLIVYSLGYIV----TWQYTSAA 181 (607)
Q Consensus 109 ~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~--~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~ 181 (607)
+++++|++.+++.|+++|.+.+...| ..++..|+.++++|++. .+....+.++|..+++.+++.+ +||+.|++
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 99999999999999999988888888 88899999887777654 5777777888888888888766 89999999
Q ss_pred hHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 182 CAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
.++..++..+.
T Consensus 161 ~~~~~~~~~~~--------------------------------------------------------------------- 171 (375)
T TIGR00899 161 AALAFVLCGVL--------------------------------------------------------------------- 171 (375)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 88876665552
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
..+++||.|++..++.+
T Consensus 172 ----------------------------------------~~~~~~~~~~~~~~~~~----------------------- 188 (375)
T TIGR00899 172 ----------------------------------------VWLFLPSYPRGAPGALT----------------------- 188 (375)
T ss_pred ----------------------------------------HHHhCCCcccCcccccC-----------------------
Confidence 22234444321000000
Q ss_pred HHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRF 419 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~ 419 (607)
..+.++.+++++.+. ......+... .......+.|.+++ +.|.+.. ............+
T Consensus 189 --------------~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 249 (375)
T TIGR00899 189 --------------RLEVRGLLASRDTRL-LFVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEI 249 (375)
T ss_pred --------------cchhhhhhcCcchHH-HHHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 000112334443332 2222212111 12334455666664 3465443 3344444455667
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++.++.+++.||++||+.+..+.....+....+.. . ++.+.......+...+.+. ..+....+..|.
T Consensus 250 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~ 316 (375)
T TIGR00899 250 PFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---D---------NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDL 316 (375)
T ss_pred HHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---H---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 78889999999999999887765544443332222 0 1122222222222222222 235555778888
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 500 FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
.|++ ++++.++.+...++|..++|.+.|.+.+..|+...+++.+++.+++.++..
T Consensus 317 ~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 317 MPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 8865 679999999999999999999999999999998888888877777666643
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=239.50 Aligned_cols=353 Identities=13% Similarity=0.039 Sum_probs=241.6
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHH
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLL 118 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l 118 (607)
+.....+.+|.+.+ ++|.++.+.++..+.+.+++.+++++.|+++||+|||++++.+..+..++.+++++++|++.+
T Consensus 28 ~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 104 (406)
T PRK15402 28 ANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQF 104 (406)
T ss_pred hhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 44555666777777 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM 193 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~ 193 (607)
++.|+++|++.+...+ ..+++.|.+++++|.+..++......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~- 183 (406)
T PRK15402 105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG- 183 (406)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH-
Confidence 9999999999999989 999999999999999999988888888888888887766 8999999888777665542
Q ss_pred hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHH
Q psy10231 194 HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGV 273 (607)
Q Consensus 194 ~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~ 273 (607)
T Consensus 184 -------------------------------------------------------------------------------- 183 (406)
T PRK15402 184 -------------------------------------------------------------------------------- 183 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcC
Q psy10231 274 LIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAG 353 (607)
Q Consensus 274 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (607)
..+..||+++.. ++..+ .++
T Consensus 184 ----------------------------~~~~~~~~~~~~---~~~~~------------------~~~----------- 203 (406)
T PRK15402 184 ----------------------------LWRAMPETAGRV---GEKLS------------------LKE----------- 203 (406)
T ss_pred ----------------------------HHHhCCCCCccc---ccccc------------------HHH-----------
Confidence 122234432100 00000 000
Q ss_pred CccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc
Q psy10231 354 SSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM 431 (607)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~ 431 (607)
..+++++.+++|+.+...+... +.. ........+.|.++.+ .+.+.. .........++.+++.++.+++.||
T Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r 277 (406)
T PRK15402 204 -LGRDYKLVLKNRRFVAGALALG-LVS----LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR 277 (406)
T ss_pred -HHHHHHHHHcCcHHHHHHHHHH-HHH----HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0012334566665443222111 111 1123344556766643 466443 3344445556778899999999999
Q ss_pred cCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHH
Q psy10231 432 FSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGI 511 (607)
Q Consensus 432 ~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 511 (607)
+++|+....+.....++.+.+....... ....+.......+++.+.+.. .+..+...... +++.|+++.+.
T Consensus 278 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~-~~~~~g~~~~~ 348 (406)
T PRK15402 278 RPLRSLIRMGLWPMVAGLLLAALATVIS-------SHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLFS-SDVSKGTVSAA 348 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcc-------cccHHHHHHHHHHHHHHHHHH-hhhHHHHHhhh-ccccccHHHHH
Confidence 9999988888777666666555421110 011222223333333333322 23332333333 44789999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHH
Q psy10231 512 VCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLA 550 (607)
Q Consensus 512 ~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~ 550 (607)
.+....++..+++.+.+.+.+..+.....+...+..++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999888777654444433333333
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=242.14 Aligned_cols=357 Identities=16% Similarity=0.151 Sum_probs=267.0
Q ss_pred cccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc--cchhHHHHHHHHHhhhhhhH
Q psy10231 55 SIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS--KGFTLLCVGRFITGMAIGMS 132 (607)
Q Consensus 55 ~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a--~~~~~l~~~R~l~G~g~g~~ 132 (607)
.+++.|+.|.+++.++++.|+.+++++.|+++||+|-|+++..+.++.++++++...+ .+++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 3789999999999999999999999999999999999999999999999999999987 45678899999999999999
Q ss_pred hh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhc
Q psy10231 133 SA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQ 206 (607)
Q Consensus 133 ~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~ 206 (607)
+| ...+...|.|+++|++..++...+..+|.+++.++++.+ ||++.|++.++.+++..++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~-------------- 211 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFIL-------------- 211 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHH--------------
Confidence 99 999999999999999999999999999999999888887 8999999999999888773
Q ss_pred cccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhH
Q psy10231 207 GMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQ 286 (607)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr 286 (607)
T Consensus 212 -------------------------------------------------------------------------------- 211 (466)
T KOG2532|consen 212 -------------------------------------------------------------------------------- 211 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCC-ccchhhhhhcc
Q psy10231 287 YTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGS-SMDHCAQTFTN 365 (607)
Q Consensus 287 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 365 (607)
..++..|+|.- ++..+++|.++++++..+++..+ ....+++++++
T Consensus 212 ---------------w~~~~~d~P~~-------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts 257 (466)
T KOG2532|consen 212 ---------------WFLFYSDSPSK-------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTS 257 (466)
T ss_pred ---------------HHHHhcCCccc-------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcC
Confidence 33334444421 11223445555554443332222 56789999998
Q ss_pred CcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCc--------
Q psy10231 366 SAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRR-------- 435 (607)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr-------- 435 (607)
+..| +..+..++...+.+.+..|.|.|+++. +++.. .+....+..+...+..+++|.++||+.+|
T Consensus 258 ~~vw-----ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r 332 (466)
T KOG2532|consen 258 PPVW-----AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR 332 (466)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence 8655 445556666777899999999999864 77654 57778888899999999999999997653
Q ss_pred -hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc-CccchhhHHHHHH
Q psy10231 436 -ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF-PLSVRGIMGGIVC 513 (607)
Q Consensus 436 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~ 513 (607)
-.-.++....++.++.+++. +....+..++++.+.....+ ..... .+..... .++..+..+|+.+
T Consensus 333 kifn~i~~~~~ai~l~~l~~~----------~~~~~~~a~~~l~~~~~~~g--~~~~G-f~~~~~~~apq~a~~l~g~~~ 399 (466)
T KOG2532|consen 333 KIFNTIAFGGPAVFLLVLAFT----------SDEHRLLAVILLTIAIGLSG--FNISG-FYKNHQDIAPQHAGFVMGIIN 399 (466)
T ss_pred HHHHhHHHHHHHHHHHeeeec----------CCCcchHHHHHHHHHHHHcc--cchhh-hHhhhhhccchHHHHHHHHHH
Confidence 22223333444444444331 11222233333322222222 11112 2222222 4567899999999
Q ss_pred HHHHHHHHHHhhhcHHHHH---hhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 514 SLGYLFIFTTVKMYPDLMY---LLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 514 ~~~~~~~~i~~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
.+..+.++++|.+.+.+.. ...|+..|++.+++.+++.++..++
T Consensus 400 ~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 400 FVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 9999999999999999983 3579999999999999888665554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=237.29 Aligned_cols=338 Identities=14% Similarity=0.127 Sum_probs=238.8
Q ss_pred ccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccch
Q psy10231 36 NNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGF 115 (607)
Q Consensus 36 ~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~ 115 (607)
..+......+.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++++
T Consensus 17 ~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI 93 (385)
T ss_pred HHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 34455566777888888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~ 190 (607)
+.+++.|+++|++.+...+ ..+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.|++.++..++..
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999988876 89999998887766655
Q ss_pred HHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 191 AAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 191 ~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
+.
T Consensus 174 ~~------------------------------------------------------------------------------ 175 (385)
T TIGR00710 174 AL------------------------------------------------------------------------------ 175 (385)
T ss_pred HH------------------------------------------------------------------------------
Confidence 42
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHh
Q psy10231 271 LGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350 (607)
Q Consensus 271 ~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (607)
..+..||+++. ++.++.++
T Consensus 176 -------------------------------~~~~~~~~~~~----~~~~~~~~-------------------------- 194 (385)
T TIGR00710 176 -------------------------------IFFILPETLPY----EARIQIST-------------------------- 194 (385)
T ss_pred -------------------------------HHHhCCCCCCC----cccCCHHH--------------------------
Confidence 22223443210 00000000
Q ss_pred hcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHHHHHHHhHh
Q psy10231 351 MAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFFMAIIGSAC 428 (607)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l 428 (607)
..+.+++.+++++.+...+... . .....+....+.|.+++ +.|.+.. .........+..+++.++.+++
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l 265 (385)
T TIGR00710 195 ----YFETFLLLLKSKMFWGYALIYG-A----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRF 265 (385)
T ss_pred ----HHHHHHHHHcCchhHHHHHHHH-H----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012234555665543222211 1 12224455666677765 4566443 4556667778889999999999
Q ss_pred hcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhH
Q psy10231 429 IQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIM 508 (607)
Q Consensus 429 ~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 508 (607)
.||+++|+.+..+.....++.+.+....... ...+........+.........+.......|..| +.++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~ 336 (385)
T TIGR00710 266 IKKWGAKSLLRMGLILFAVSAVLLEITAILG--------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTA 336 (385)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHH
Confidence 9999999988877666666655544321110 1122222222222222222234555577778877 568999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 509 GGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 509 ~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
.++.+...+.++.+.+.+.+.+.+.
T Consensus 337 ~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 337 SALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999887777777666644443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=233.12 Aligned_cols=334 Identities=21% Similarity=0.275 Sum_probs=268.5
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS 112 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a 112 (607)
.+...++.....+..|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 8 FFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 34556666777788888887 889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHH
Q psy10231 113 KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVAL 187 (607)
Q Consensus 113 ~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~ 187 (607)
++++.+++.|++.|++.+...+ ..+++.|++|+++|++..++......+|..+++.+++.+ +||+.+++.++..+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999877 79999998887776
Q ss_pred HHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 188 VGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 188 ~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
+..+.
T Consensus 165 ~~~~~--------------------------------------------------------------------------- 169 (352)
T cd06174 165 LLALL--------------------------------------------------------------------------- 169 (352)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 65541
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSL 347 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (607)
..+.+ |
T Consensus 170 -----------------------------------~~~~~--~------------------------------------- 175 (352)
T cd06174 170 -----------------------------------LLFLL--R------------------------------------- 175 (352)
T ss_pred -----------------------------------HHHHH--H-------------------------------------
Confidence 11111 0
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHHHHHHH
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSLD-DYVASIIVAGLRFFMAIIG 425 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~ 425 (607)
.+....+..+...........+.+.+.++. +.+.. .+.......+...++.++.
T Consensus 176 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 231 (352)
T cd06174 176 ------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231 (352)
T ss_pred ------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222233334567777888888765 55433 5667788888999999999
Q ss_pred hHhhcccCCch-hHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc
Q psy10231 426 SACIQMFSRRA-LATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 426 g~l~d~~grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
+++.||++||+ .+..+.....++.+..... .....................+....+..|..|++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T cd06174 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298 (352)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH
Confidence 99999999999 8888888877777666541 112223333333333334456777799999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 505 RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 505 r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
|++..|+.+...+++..+++.+.+.+.+..++...+.+.+++.+++.++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999988999889888888887776644
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=240.84 Aligned_cols=337 Identities=19% Similarity=0.248 Sum_probs=242.5
Q ss_pred hhhccccccccccccc-cccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 33 LHCNNLTHAIPSILIP-QLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p-~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
.++..++.....+.+| .+.+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 3445556666777778 7777 99999999999999999999999999999999999999999999999999777777
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVA 186 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~ 186 (607)
++|++.++++|++.|++.+...+ ..+++.|++|+++|++++++...+.++|.++++.+++.+ +||+.|++.+++.
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS 161 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence 78888999999999999999999 999999999999999999999999999999999999887 8999999999988
Q ss_pred HHHHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 187 LVGFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 187 ~~~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
++..++. ++.++.+....++.++
T Consensus 162 ~~~~il~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 185 (352)
T PF07690_consen 162 LIAAILFILFLPEPPPPRERESPK-------------------------------------------------------- 185 (352)
T ss_dssp HHHHHHHHCCC---STTTT--SST--------------------------------------------------------
T ss_pred hhhhhhHhhhhhhccccccccccc--------------------------------------------------------
Confidence 8876631 2222222110000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
+++
T Consensus 186 -----------------------------------------------------~~~------------------------ 188 (352)
T PF07690_consen 186 -----------------------------------------------------ESE------------------------ 188 (352)
T ss_dssp -----------------------------------------------------TTT------------------------
T ss_pred -----------------------------------------------------ccc------------------------
Confidence 000
Q ss_pred HHHHhhcCCccc-hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHhCCC--cchHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMD-HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFF-EDAGSS--LDDYVASIIVAGLRFFM 421 (607)
Q Consensus 346 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~--~~~~~~~~~~~~~~~~~ 421 (607)
++.+.... .+++.++++..| ..+....+. .........+.|.++ +..+.+ .+......+..+...++
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 189 ----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLF----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp ------HHHCCCH-CTHHHHHHCCH-HHHHHHHHH----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccccccccccccccchhh-hhhhhhhHH----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000111 244555555554 122222222 223455778888874 455666 23455677778888888
Q ss_pred HHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccC
Q psy10231 422 AIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501 (607)
Q Consensus 422 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 501 (607)
.++.+++.||+++|+..........+..+.+...... ...........+.+. ......+....+..|..|
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 329 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---------SSPVWLIIALFLIGF-GFGIVFPILFSLIQELVP 329 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---------CHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC
Confidence 9999999999999877776666666665555442211 112222233333333 333345677789999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHh
Q psy10231 502 LSVRGIMGGIVCSLGYLFIFTTV 524 (607)
Q Consensus 502 ~~~r~~~~g~~~~~~~~~~~i~~ 524 (607)
++.|+++.|+.+...+++..++|
T Consensus 330 ~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 330 PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=234.02 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=136.9
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHH
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLL 118 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l 118 (607)
...+..+.+|.+.+ +++.+..+.++..+.+.+++.+++++.|+++||+|||++++.+.++++++++++++++|++.+
T Consensus 31 ~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 107 (413)
T PRK15403 31 TTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQF 107 (413)
T ss_pred HHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44455667777777 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
+++|+++|++.+...+ ..+++.|++++++|++.+++...+..+|..+||.+++.+ +||+.|++.++..++..+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999988777 889999999999999999999999999999999998866 899999998887776655
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=238.31 Aligned_cols=353 Identities=20% Similarity=0.278 Sum_probs=228.6
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHH-----HHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASL-----GVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~-----~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
.+|....+...+.+.+.. ..+.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTF-FPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555521 123556666665543 33444578999999999999999999999999999999999
Q ss_pred ccchh--------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---------
Q psy10231 112 SKGFT--------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV--------- 173 (607)
Q Consensus 112 a~~~~--------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l--------- 173 (607)
++|+. .++++|+++|++.+...+ ..+++.|++++++|++..+....+..+|.++++.++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~ 164 (394)
T TIGR00883 85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164 (394)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 99976 488999999999999999 999999999999999999999999999999988776432
Q ss_pred ---hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHH
Q psy10231 174 ---TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVA 250 (607)
Q Consensus 174 ---~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 250 (607)
+||+.|++.+++.++
T Consensus 165 ~~~~w~~~~~~~~~~~~~-------------------------------------------------------------- 182 (394)
T TIGR00883 165 LEWGWRIPFLVSAVLVLI-------------------------------------------------------------- 182 (394)
T ss_pred hccchHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 455555554443333
Q ss_pred HhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHh
Q psy10231 251 EICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFR 330 (607)
Q Consensus 251 E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~ 330 (607)
..+.....||+|++..++++
T Consensus 183 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~------------ 202 (394)
T TIGR00883 183 ------------------------------------------------GLYLRRNLEETPVFEKAQEK------------ 202 (394)
T ss_pred ------------------------------------------------HHHHHHhcCCChhHHHHHhc------------
Confidence 22344445665432111000
Q ss_pred cCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hH
Q psy10231 331 RSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DY 408 (607)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~ 408 (607)
++....+.++.+++++ +.+...... .+......+....+.|.+++ +.+.+.. ..
T Consensus 203 ---------------------~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 258 (394)
T TIGR00883 203 ---------------------HKKKRGPIRETLTKHR--KPFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSAL 258 (394)
T ss_pred ---------------------cccccCCHHHHHHhch--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 0011123344454442 112222222 22333345666778888885 4465443 45
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHH-HHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 409 VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSM-GISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
.......+...++.++.+++.||+|||+.+.....+..+.. ..+... . .....+.............. .
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~g~~~~-~ 328 (394)
T TIGR00883 259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL--L-------DSGSFTLFFFLVLGLALIGG-M 328 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH--h-------cCCchHHHHHHHHHHHHHHH-H
Confidence 56667778889999999999999999987765444333322 111110 0 01222333333333333332 2
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHH-HHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHH
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSL-GYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCA 546 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~ 546 (607)
..+....+..|.+|++.|+++.++.+.. ..++..++|.+.|.+.++.| +...++.....
T Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 3455668899999999999999986544 55788899999999999887 55544444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=234.61 Aligned_cols=331 Identities=15% Similarity=0.063 Sum_probs=230.1
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R 122 (607)
..+.+|.+.+ ++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++++++|++.+++.|
T Consensus 25 ~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (401)
T PRK11043 25 YLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLR 101 (401)
T ss_pred HHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3445555566 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCC
Q psy10231 123 FITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVP 197 (607)
Q Consensus 123 ~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~p 197 (607)
+++|++.+...+ ..+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~---- 177 (401)
T PRK11043 102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT---- 177 (401)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH----
Confidence 999999998888 889999999999999988888888888888888888776 99999998887776655522
Q ss_pred CChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHH
Q psy10231 198 ETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 277 (607)
Q Consensus 198 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~ 277 (607)
T Consensus 178 -------------------------------------------------------------------------------- 177 (401)
T PRK11043 178 -------------------------------------------------------------------------------- 177 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccc
Q psy10231 278 SLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMD 357 (607)
Q Consensus 278 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (607)
++++|+++ +++.++ ...
T Consensus 178 --------------------------~~~~~~~~----~~~~~~---------------------------------~~~ 194 (401)
T PRK11043 178 --------------------------LRLKPSKK----ARKQSQ---------------------------------DAL 194 (401)
T ss_pred --------------------------HHcCCCCC----ccccch---------------------------------HHH
Confidence 22233211 000000 001
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCch
Q psy10231 358 HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRA 436 (607)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 436 (607)
++++.+++++.+...+..... .........+.|.++++.|.+.. .+.......+..+++.++.+++.||+++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 195 TFKQLLKSKTYLGNVLIFAAC-----SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred HHHHHHcChhHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 233455566544332222111 12234556677888877677543 344445556677888899999999999988
Q ss_pred hHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHH
Q psy10231 437 LATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLG 516 (607)
Q Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 516 (607)
..........++.+.+....... ....+............. ....+.......|..| +.++++.|+.+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~ 340 (401)
T PRK11043 270 LLPWLLVLFAVSVIAIWLASLLS-------HPSLVPLLIPFCVMAAAN-GAIYPIVVAQALRPFP-QATGKAAALQNTLQ 340 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------cCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCc-ccChHHHHHHHHHH
Confidence 76555544444433322211110 011222222222222222 2334555556667676 46899999999999
Q ss_pred HHHHHHHhhhcHHHHHhhhhH
Q psy10231 517 YLFIFTTVKMYPDLMYLLNMG 537 (607)
Q Consensus 517 ~~~~~i~~~i~~~l~~~~g~~ 537 (607)
..++..++.+.+.+.+.....
T Consensus 341 ~~~~~~~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 341 LGLCFLASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHHHHHHHccCCChhH
Confidence 999999999999887754443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=232.39 Aligned_cols=365 Identities=11% Similarity=0.020 Sum_probs=234.4
Q ss_pred hHHHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHH
Q psy10231 29 WIGKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTI 108 (607)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~ 108 (607)
.....++..+.........+.+.. |++.++.+.+++.+.+.+++.+++++.|+++||+|||++++.+.+++++++++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 333444445433333344445555 88889999999999999999999999999999999999999999999999998
Q ss_pred HHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHH
Q psy10231 109 ITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAV 184 (607)
Q Consensus 109 ~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~ 184 (607)
++++.+. ++.|+++|++.+...| ..+++.|++|+++|+++.++......+|.++||.+++.+ .|+..+.+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~ 161 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCAL 161 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887664 7889999999999999 999999999999999999999999999999999999988 44444444433
Q ss_pred HHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 185 VALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 185 ~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
..++..+
T Consensus 162 ~~~~~~~------------------------------------------------------------------------- 168 (393)
T PRK11195 162 IYLLAAL------------------------------------------------------------------------- 168 (393)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 3332322
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
..+.+||+|.....++. + .... .++.+
T Consensus 169 -------------------------------------~~~~l~~~~~~~~~~~~-~-~~~~--------------~~~~~ 195 (393)
T PRK11195 169 -------------------------------------FNLFIPRLGARRPGQSW-N-PIAL--------------LRDFF 195 (393)
T ss_pred -------------------------------------HHhcCCCCcccccccCC-C-HHHH--------------HHHHH
Confidence 22334443311000000 0 0000 00000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~ 422 (607)
...+.+++++..+..+.....+... .....+..+.++++ .|.+. ..+......+++.++++
T Consensus 196 ------------~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~ 258 (393)
T PRK11195 196 ------------HACRVLWRDKLGRFSLAGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA 258 (393)
T ss_pred ------------HHHHHHHhCchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 0123455666544333222222111 22333344445443 35543 35566777788899999
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
++.+++.||.++|+....+.. .++....++. . ++.+.......+.+.+.+... +...+...|..|+
T Consensus 259 ~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---~---------~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~ 324 (393)
T PRK11195 259 GAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---Q---------HSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHV 324 (393)
T ss_pred HHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---H---------hHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcc
Confidence 999999999998877766543 3332222221 0 122222233323333333322 3344666677666
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 503 SV-RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 503 ~~-r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+. +|.+.++.+...+++..++..+.+. .+..|....+.+.+...+++..+.+.+
T Consensus 325 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 325 LVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred cccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55 7999999999999999999988884 466776666666555555555554444
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=231.93 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=142.6
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchh
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~ 116 (607)
-+|...+..+.+.++. .+|++++..|++.+.+.+.+.+++++.|+++|||+||+++.+|..++.++.++++++..||
T Consensus 46 y~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fw 122 (493)
T KOG1330|consen 46 YADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFW 122 (493)
T ss_pred HhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~ 190 (607)
++.++|.+.|+|.+...| ++++++|.++..+|++++++++.+..+|..+|.+.+..+ .|||.|+..++++++..
T Consensus 123 q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~ 202 (493)
T KOG1330|consen 123 QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVG 202 (493)
T ss_pred HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999998887 59999999999999887
Q ss_pred HHH
Q psy10231 191 AAM 193 (607)
Q Consensus 191 ~~~ 193 (607)
++.
T Consensus 203 ~L~ 205 (493)
T KOG1330|consen 203 LLV 205 (493)
T ss_pred HHH
Confidence 743
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=233.82 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=135.5
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVG 121 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~ 121 (607)
...+.+|.+.+ ++|.++.+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++.+++|++.+++.
T Consensus 21 ~~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 97 (392)
T PRK10473 21 MYLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAG 97 (392)
T ss_pred HHhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34467788888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
|+++|++.+...+ ..+++.|.+++++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++..+
T Consensus 98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999888766 899999998877766554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=220.92 Aligned_cols=358 Identities=16% Similarity=0.166 Sum_probs=268.8
Q ss_pred ccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchh---
Q psy10231 40 HAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT--- 116 (607)
Q Consensus 40 ~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~--- 116 (607)
-.+.+++.+.+++ |+++|+.|.+++.+...+..++..++.|.+.||+|.|++..++.++..+-.+..+++.+++
T Consensus 30 W~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~ 106 (417)
T COG2223 30 WTLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTW 106 (417)
T ss_pred HHHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 3445788888887 9999999999999999999999999999999999999999999999999999999986555
Q ss_pred HHHHHHHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h---HHHHHHHhHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T---WQYTSAACAVVALVG 189 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~---Wr~~f~~~~~~~~~~ 189 (607)
++++.+.+.|++.+.......++++++||+++|.++++.. ..++|..+...++..+ + ||..-.+..+..++.
T Consensus 107 ~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 107 QLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998887779999999999999999999998 6677776665555544 6 888888877777765
Q ss_pred HHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHH
Q psy10231 190 FAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFV 269 (607)
Q Consensus 190 ~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~ 269 (607)
.++
T Consensus 186 ~v~----------------------------------------------------------------------------- 188 (417)
T COG2223 186 AVL----------------------------------------------------------------------------- 188 (417)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 552
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy10231 270 SLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKV 349 (607)
Q Consensus 270 ~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (607)
.++...|.|....+.++..
T Consensus 189 --------------------------------~~~~~~d~p~~r~~~~~~~----------------------------- 207 (417)
T COG2223 189 --------------------------------AWLGMNDVPEHRASVKPQL----------------------------- 207 (417)
T ss_pred --------------------------------HHHHhCCChhhhccccccc-----------------------------
Confidence 3333334332100000000
Q ss_pred hhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHHHHhH
Q psy10231 350 QMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAIIGSA 427 (607)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 427 (607)
....+..+++++.|. +.+.++..+.++..+..+.|.++++ .+.+. +++.......+.+.+.++++|+
T Consensus 208 ------~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~ 276 (417)
T COG2223 208 ------PAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGW 276 (417)
T ss_pred ------hhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccch
Confidence 022344566676664 2344445666788899999999975 46644 4567788888889999999999
Q ss_pred hhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhh
Q psy10231 428 CIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGI 507 (607)
Q Consensus 428 l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 507 (607)
++||+|.++.+...+..++++..+++....... ...+........+......+.+. ...+.++...+|. +.|.
T Consensus 277 LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~-~~G~ 349 (417)
T COG2223 277 LSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG-----HGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPK-ETGA 349 (417)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHccccccc-----cCcchHHHHHHHHHHHHHhccCc-chheeechHHHHh-hhhH
Confidence 999999999999888888888877766321110 01222222332333333334443 3445778888875 5699
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhc
Q psy10231 508 MGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 508 ~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+.|+...++.+|++.-|...+...+..| +...|+++..+.+++.+..+..
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 7778888888888888876654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=232.52 Aligned_cols=358 Identities=14% Similarity=0.109 Sum_probs=242.6
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH---H
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII---T 110 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---a 110 (607)
+..+++.....+.+|.+++ ++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.+++.++++++ +
T Consensus 36 ~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 36 FLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778889999988 999999999999999999999999999999999999999999999999999886 5
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----------------
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---------------- 173 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---------------- 173 (607)
+++|++.++++|+++|+|.|...+ ...++.|+.++++|.+.++..+..+.+|..+++.++..+
T Consensus 113 ~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l 192 (438)
T PRK10133 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhcc
Confidence 689999999999999999999999 999999987777777789999999999999998887532
Q ss_pred ------hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHH
Q psy10231 174 ------TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYV 247 (607)
Q Consensus 174 ------~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 247 (607)
+||+.+
T Consensus 193 ~~~~~~~w~~~~-------------------------------------------------------------------- 204 (438)
T PRK10133 193 TPEQLSAYKHSL-------------------------------------------------------------------- 204 (438)
T ss_pred ChhhHHHHHHHH--------------------------------------------------------------------
Confidence 111111
Q ss_pred HHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHHHH-hhhccccCChHHHHHhCChHHHHHH
Q psy10231 248 YVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAA-CAVVALVGF-AAMHAVPETPSWLARQGCTKEARNS 325 (607)
Q Consensus 248 ~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~-~~i~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~ 325 (607)
..+||.++.. ..+..++.+ +.....||.+. +++.++
T Consensus 205 ----------------------------------~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~---- 242 (438)
T PRK10133 205 ----------------------------------VLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDA---- 242 (438)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccccc----
Confidence 1246655542 222222222 22333444211 000000
Q ss_pred HHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HH-hCC
Q psy10231 326 LVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFF-ED-AGS 403 (607)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~ 403 (607)
+..+...+.++++++|.++...+..+ + ..........|.+.++ ++ .|.
T Consensus 243 -------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~-~----~~~~~~~~~~~~~~~l~~~~~g~ 292 (438)
T PRK10133 243 -------------------------KQGSFSASLSRLARIRHWRWAVLAQF-C----YVGAQTACWSYLIRYAVEEIPGM 292 (438)
T ss_pred -------------------------cccchhhhHHHHHhCchHHHHHHHHH-H----HHHHHHHHHHHHHHHHhhhcCCC
Confidence 00001123345677776554322221 1 1123344555667664 43 466
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHH
Q psy10231 404 SLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482 (607)
Q Consensus 404 ~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (607)
+.. .........++.++++++++++.||+++|+.+..+..+..+.+.+..+ . . .........+.+
T Consensus 293 s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~---------~-~~~~~~~~~l~g- 358 (438)
T PRK10133 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A---------G-GHVGLIALTLCS- 358 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c---------C-ChHHHHHHHHHH-
Confidence 543 566778888899999999999999999999888776665554443322 0 1 111122222223
Q ss_pred HHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHH
Q psy10231 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLA 550 (607)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~ 550 (607)
.+.....|..+....|.+|++ .+.+.++.. ...+++.++|.+.|.+.+..| .+..|++.....+..
T Consensus 359 lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 333344677778888888764 577777776 455788999999999999877 566665544443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=228.50 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=137.1
Q ss_pred ccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHH
Q psy10231 40 HAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLC 119 (607)
Q Consensus 40 ~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~ 119 (607)
..+..+.+|.+.+ ++|+++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++++++|++.++
T Consensus 7 ~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 7 IDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3445677777777 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 120 VGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 120 ~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
+.|+++|++.+...+ ..+++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.+++.++..+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999988776 899999988877766554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=226.81 Aligned_cols=364 Identities=13% Similarity=0.068 Sum_probs=240.9
Q ss_pred HHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH
Q psy10231 31 GKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT 110 (607)
Q Consensus 31 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a 110 (607)
...+..|+..++.++++|.+++ ++|++..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++.
T Consensus 10 ~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 10 SLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3445668888888899999998 9999999999999999999999999999999999999999999999999998865
Q ss_pred h---ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Q psy10231 111 V---SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVA 186 (607)
Q Consensus 111 ~---a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f~~~~~~~ 186 (607)
. .+|++.+++.|++.|+|.|...+ ...++.+..|+++|++.+++.+...++|..+++.++..+-
T Consensus 87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~------------ 154 (410)
T TIGR00885 87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI------------ 154 (410)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 4 46899999999999999999999 9999999999999999999999999999999998876430
Q ss_pred HHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhh
Q psy10231 187 LVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGP 266 (607)
Q Consensus 187 ~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~ 266 (607)
....++.......+...
T Consensus 155 ------~~~~~~~~~~~~~~~~~--------------------------------------------------------- 171 (410)
T TIGR00885 155 ------LSNLPHQSQDVLDKLSP--------------------------------------------------------- 171 (410)
T ss_pred ------hcCCccchhhhhhhcCH---------------------------------------------------------
Confidence 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhh--ccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 267 VFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAM--HAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 267 ~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~--~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
............+||.++.+.+++.++..+.. ...||.+. ++ +.
T Consensus 172 -----~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~~---------------------- 217 (410)
T TIGR00885 172 -----EELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--AK---------------------- 217 (410)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--cc----------------------
Confidence 00001112234467777765555444433332 22343210 00 00
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD---DYVASIIVAGLRFFM 421 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~ 421 (607)
+.....+.++.+++|+++...+ ..++... .......|.+.+.++.+.+.+ +............+|
T Consensus 218 -------~~~~~~~~~~~~~~~~~~~~~l-~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 218 -------QISFSASLSRLARIRHYREGVI-AQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred -------cccchhhHHHHHhChhHHHHHH-HHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000012234566665554222 2222222 233455777887765433222 222344444667899
Q ss_pred HHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccC
Q psy10231 422 AIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501 (607)
Q Consensus 422 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 501 (607)
+++++++.||+++|+.+........+..++... .............+ ++.....|..+....+..+
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-------------~~~~~~~~~l~~~g-lf~s~~fp~i~sl~~~~~g 351 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-------------AGGHVGLYCLTLCS-AFMSLMFPTIYGIALKGLG 351 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------------cCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Confidence 999999999999999888777776666655544 11122233333333 3334445888899999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh
Q psy10231 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL 534 (607)
Q Consensus 502 ~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~ 534 (607)
++.+..+.++...+ +|+.+.|++.|.+.|..
T Consensus 352 ~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 352 QDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 88765566655554 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=228.34 Aligned_cols=351 Identities=15% Similarity=0.041 Sum_probs=236.8
Q ss_pred ccccccccccccc-cccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccc
Q psy10231 36 NNLTHAIPSILIP-QLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG 114 (607)
Q Consensus 36 ~~~~~~~~~~~~p-~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~ 114 (607)
..+......+.+| .+.+ ++|.+..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++..++.++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 98 (400)
T PRK11646 22 VVLGFFVVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333433 3455 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVVALVGF 190 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~~~~~~ 190 (607)
++.+++.|+++|++.+...+ ..+++.|.+|+++|+++.++.....++|..+||.+++.+ +||+.|++.++..++..
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999989 899999999999999999999999999999999999877 89999998877766554
Q ss_pred HHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 191 AAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 191 ~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
+.
T Consensus 179 i~------------------------------------------------------------------------------ 180 (400)
T PRK11646 179 AF------------------------------------------------------------------------------ 180 (400)
T ss_pred HH------------------------------------------------------------------------------
Confidence 31
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHh
Q psy10231 271 LGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350 (607)
Q Consensus 271 ~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (607)
..+..||.+ +++.++
T Consensus 181 -------------------------------~~~~~~~~~-----~~~~~~----------------------------- 195 (400)
T PRK11646 181 -------------------------------NAWLLPAYK-----LSTVRT----------------------------- 195 (400)
T ss_pred -------------------------------HHHhCCccc-----ccccch-----------------------------
Confidence 112223310 000000
Q ss_pred hcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhh
Q psy10231 351 MAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACI 429 (607)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 429 (607)
+...++++.+++++.+......... .........+.|.+.++.+.+. +........++....+....+++.
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 267 (400)
T PRK11646 196 ---PVREGMTRVLRDKRFVTYVLTLTGY-----YMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWS 267 (400)
T ss_pred ---hhHHHHHHHHcCchHHHHHHHHHHH-----HHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001233455566544322211111 1112233456788877654432 334444444555554444445555
Q ss_pred -cccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhH
Q psy10231 430 -QMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIM 508 (607)
Q Consensus 430 -d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 508 (607)
||.+.++.+..+..+.+++...++.. +..+........+..+.. ...|...++..|..|++.|+++
T Consensus 268 ~~r~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~ 334 (400)
T PRK11646 268 EKRFRLEHRLMAGLLIMSLSMFPIGMV------------SNLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSY 334 (400)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhh
Confidence 45665666666666666555544331 112222222222333222 2335556788899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHhhh----hHHHHHHHHHHHHHHHHH
Q psy10231 509 GGIVCSLGYLFIFTTVKMYPDLMYLLN----MGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 509 ~g~~~~~~~~~~~i~~~i~~~l~~~~g----~~~~~~~~~~~~~~~~~~ 553 (607)
.|+.+....++..++|.+.|.+.+..+ ....++..+.+++++.+.
T Consensus 335 ~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 335 MGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 233455545555554444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=232.15 Aligned_cols=379 Identities=12% Similarity=0.077 Sum_probs=248.7
Q ss_pred CccccccCcchhHHH--hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-----c
Q psy10231 18 SIISISSDDASWIGK--LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-----G 90 (607)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-----G 90 (607)
.|++++++++.+... .+..|+..+..+..+|...+ +.|.+..+++.+ +.....+ ++.+++|+++||+ |
T Consensus 4 ~~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~G 78 (491)
T PRK11010 4 QYLRIFQQPNSAILLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLG 78 (491)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCC
Confidence 355555555433222 23456666667777888777 778898999987 3444444 5899999999999 9
Q ss_pred Cchh-hhhhhhHHHHHHHHHHhc---cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHH
Q psy10231 91 RKTT-VQLTAIPFIIGWTIITVS---KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLI 165 (607)
Q Consensus 91 rr~~-l~~~~~l~~~~~~~~a~a---~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i 165 (607)
||+. ++.+.+..+++..++++. ++++.+.+.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.++
T Consensus 79 rrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll 158 (491)
T PRK11010 79 RRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV 158 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 9986 667777777887777775 4688999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhhh-----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcc
Q psy10231 166 VYSLGYIV-----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIG 240 (607)
Q Consensus 166 g~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 240 (607)
++.++..+ |||..|++.++..++..+..+
T Consensus 159 g~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~---------------------------------------------- 192 (491)
T PRK11010 159 SGGLALWLADRYLGWQGMYWLMAALLIPCIIATL---------------------------------------------- 192 (491)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 98776654 799999998877666554222
Q ss_pred hhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChH
Q psy10231 241 MSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTK 320 (607)
Q Consensus 241 ~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~ 320 (607)
++||+++.. ++.+
T Consensus 193 ----------------------------------------------------------------~~~e~~~~~---~~~~ 205 (491)
T PRK11010 193 ----------------------------------------------------------------LAPEPTDTI---PVPK 205 (491)
T ss_pred ----------------------------------------------------------------hcCCCcccc---cccc
Confidence 234432110 0000
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-H
Q psy10231 321 EARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFF-E 399 (607)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 399 (607)
+.+ +....++++.+++++.+......+ +.. .+......+.+.++ +
T Consensus 206 ~~~-----------------------------~~~~~~l~~~~~~~~~~~~ll~~~-l~~----~~~~~~~~~~~~~l~~ 251 (491)
T PRK11010 206 TLE-----------------------------QAVVAPLRDFFGRNNAWLILLLIV-LYK----LGDAFAMSLTTTFLIR 251 (491)
T ss_pred chh-----------------------------hhHHHHHHHHHcCcCHHHHHHHHH-HHH----HHHHHHHHHHHHHHHH
Confidence 000 000012334555554443222222 111 11233344555555 4
Q ss_pred HhCCCcch-HHHH-HHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHH
Q psy10231 400 DAGSSLDD-YVAS-IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACI 477 (607)
Q Consensus 400 ~~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (607)
+.|.+... .... ....++.+++.+++|++.||+++|+.+..+.++.++..+.+...... ..+.+......
T Consensus 252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~--------~~~~~~l~~~~ 323 (491)
T PRK11010 252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT--------DKNLYSMGAAV 323 (491)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------cccHHHHHHHH
Confidence 45765543 3333 34456888999999999999999887776555544443322211100 01112222122
Q ss_pred HHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 478 LANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
.+.....+.+. +..+++..+..|++.+++..|+.+....++..+++.+.|.+.+..||...|.+.+++++.+.+.....
T Consensus 324 ~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 324 FFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 22122222222 33457778889999999999999999999999999999999999999888888777777776665443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=230.71 Aligned_cols=357 Identities=11% Similarity=0.022 Sum_probs=244.7
Q ss_pred hhhccccccccccccc-cccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh
Q psy10231 33 LHCNNLTHAIPSILIP-QLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p-~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~ 111 (607)
.++.....+...+.+| .+.+ ++|.+..+.|++.+.+.++..+++++.|+++||+|||++++++.++..++.++.++
T Consensus 16 ~~~~~~g~~~~~~~l~~~l~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 16 SLLLTIGRGATLPFMTIYLSR---QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 4555 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVVAL 187 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~~~ 187 (607)
++|++.++++|++.|.+.+...+ ..++..|..++++|+++.++.....++|..++|.+++.+ +||..|++.++..+
T Consensus 93 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 93 VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSA 172 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 99999999999999998888888 999999999999999999999999999999999999887 89999998777766
Q ss_pred HHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 188 VGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 188 ~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
+..+.
T Consensus 173 i~~i~--------------------------------------------------------------------------- 177 (395)
T PRK10054 173 FPLVF--------------------------------------------------------------------------- 177 (395)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 55441
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSL 347 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (607)
..+.+||.++ +++ ++.+
T Consensus 178 ----------------------------------~~~~~~~~~~----~~~-~~~~------------------------ 194 (395)
T PRK10054 178 ----------------------------------IQIWVQRSEK----AIA-TETG------------------------ 194 (395)
T ss_pred ----------------------------------HHHHHhcccc----ccc-cchh------------------------
Confidence 1222232210 000 0000
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh---CCCcc-hHHHHHHHHHHHHHHHH
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA---GSSLD-DYVASIIVAGLRFFMAI 423 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~-~~~~~~~~~~~~~~~~~ 423 (607)
...+.++.+++++.+......++.... ......+.+.+.... +.+.+ .................
T Consensus 195 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 262 (395)
T PRK10054 195 -------SVWSPSVLLQDKALLWFTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQY 262 (395)
T ss_pred -------hhhhhhhhccCceehHHHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehh
Confidence 000113456677665533332222221 122223444444322 22222 23344444444555667
Q ss_pred HHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 424 IGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 424 ~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
..+++.||.++|+.+..+..+..++...+.... +..+........+..+. ....|....++.+..|++
T Consensus 263 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~ 330 (395)
T PRK10054 263 SVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-----------NSLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPG 330 (395)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-----------hHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcc
Confidence 888999999999988887766666665554310 11222222333333332 223455567788999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 504 VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 504 ~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
.|+++.+..+ ..++|..++|.+.|.+.|..|+...+++.+.+..++.++..
T Consensus 331 ~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 331 MKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred cceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9999988654 67799999999999999999888777776666666555543
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=233.18 Aligned_cols=362 Identities=14% Similarity=0.106 Sum_probs=242.0
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRF 123 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~ 123 (607)
+...+.+....+|.+...++.+++.++++++++++.+++|.+.||++-.+.+....+.+++.+++.+..+|++.+++.|+
T Consensus 63 si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ 142 (495)
T KOG2533|consen 63 SIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRF 142 (495)
T ss_pred cchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44555555555599999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----------hHHHHHHHhHHHHHHHHHH
Q psy10231 124 ITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----------TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 124 l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----------~Wr~~f~~~~~~~~~~~~~ 192 (607)
+.|+.++..+| ...+++.|+.+++|+..++++....++|.++|++++..+ ||||.|++.++++++..+.
T Consensus 143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 99999999999 999999999999999999999999999999999998873 9999999999998887763
Q ss_pred HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHH
Q psy10231 193 MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLG 272 (607)
Q Consensus 193 ~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g 272 (607)
T Consensus 223 -------------------------------------------------------------------------------- 222 (495)
T KOG2533|consen 223 -------------------------------------------------------------------------------- 222 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChH--HHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHh
Q psy10231 273 VLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPS--WLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350 (607)
Q Consensus 273 ~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (607)
.++++|+.|. |..++ +|..-..++.++.+....
T Consensus 223 -----------------------------~f~~lp~~P~~~~fl~~---~ek~~~~~~~~~~~~~~~------------- 257 (495)
T KOG2533|consen 223 -----------------------------VFFFLPDNPSKAWFLTD---EEKELVVERLRESPSGGI------------- 257 (495)
T ss_pred -----------------------------EEEEecCChhhccccch---HHHHHHHHHHHhccCCCc-------------
Confidence 4444555543 11111 011111111111110000
Q ss_pred hcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCC-cchHHHHHHHHHHHHHHHHHHhHh
Q psy10231 351 MAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSS-LDDYVASIIVAGLRFFMAIIGSAC 428 (607)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~g~l 428 (607)
.++.+...+++.+++|..|.-. ++.++.....+.+.+|+|.++++ .+++ .++.....+..++++++.+++|++
T Consensus 258 ~~~~~~~~~~~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~l 332 (495)
T KOG2533|consen 258 ENKFKWKGFKEALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYL 332 (495)
T ss_pred ccccCHHHHHHHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHH
Confidence 0113456778889998766533 22333333467899999999987 3453 346778889999999999999999
Q ss_pred hcc----cCCchhHHHhhHHHHHHH-HHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 429 IQM----FSRRALATTSAFFMALSM-GISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 429 ~d~----~grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
+|| ..+|........+..+.. +.+.. ..........+..+........+.......+....+
T Consensus 333 sdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~ 399 (495)
T KOG2533|consen 333 SDRLKTIFARRLLFIVFLCLYAIIGAISLLA-------------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN 399 (495)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-------------hccchHHhHHHHhcchhhHHHHHHHHhhccccccch
Confidence 999 445544444333333222 22222 111111111111111112222334445556655554
Q ss_pred chh-hHHHHHHHHHHHHHHHHhhhcHHHHH-hhhhHHHHHHHHHHHH
Q psy10231 504 VRG-IMGGIVCSLGYLFIFTTVKMYPDLMY-LLNMGGMMWAFSCACL 548 (607)
Q Consensus 504 ~r~-~~~g~~~~~~~~~~~i~~~i~~~l~~-~~g~~~~~~~~~~~~~ 548 (607)
.|. +..+......+.++.+++.+...... ..++...|......++
T Consensus 400 ~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~ 446 (495)
T KOG2533|consen 400 TKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACV 446 (495)
T ss_pred HHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHH
Confidence 444 34444444445566666655544333 3466666644444333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=222.42 Aligned_cols=325 Identities=14% Similarity=0.133 Sum_probs=227.3
Q ss_pred cccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHH
Q psy10231 41 AIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCV 120 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~ 120 (607)
...++.+|.+.+ ++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+++
T Consensus 17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 445678888888 999999999999999999999999999999999999999999999988888887 7899999999
Q ss_pred HHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh------hHHHHHHHhHHHHHHHHHHH
Q psy10231 121 GRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV------TWQYTSAACAVVALVGFAAM 193 (607)
Q Consensus 121 ~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l------~Wr~~f~~~~~~~~~~~~~~ 193 (607)
.|++.|++.+...+ ...++.|+++ ++|+++.++...+.++|..+++.++..+ +||+.|.+.++..++...
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 99999999999888 8888899885 6899999999999999999988877655 388888766554333221
Q ss_pred hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHH
Q psy10231 194 HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGV 273 (607)
Q Consensus 194 ~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~ 273 (607)
T Consensus 170 -------------------------------------------------------------------------------- 169 (355)
T TIGR00896 170 -------------------------------------------------------------------------------- 169 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcC
Q psy10231 274 LIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAG 353 (607)
Q Consensus 274 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (607)
.++||.++ +.++ + ++
T Consensus 170 ------------------------------~~~~~~~~------~~~~-----------~------------------~~ 184 (355)
T TIGR00896 170 ------------------------------AWIPQVRR------RVAA-----------N------------------QT 184 (355)
T ss_pred ------------------------------HHhhhhcc------ccCC-----------C------------------CC
Confidence 11122110 0000 0 00
Q ss_pred CccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhccc
Q psy10231 354 SSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMF 432 (607)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~ 432 (607)
......++.+|++..+...+. .+......+....|.|.++++.|.+.. .........++.++++++.+++.||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~ 259 (355)
T TIGR00896 185 TTRLTPVRIWRSPLAWQVTVF-----FGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRV 259 (355)
T ss_pred CCCCCCchhhcCHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 001123345566544432211 112222345667788999887776543 45677778889999999999999999
Q ss_pred C-CchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcc-ccCccchhhHHH
Q psy10231 433 S-RRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAE-LFPLSVRGIMGG 510 (607)
Q Consensus 433 g-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~g 510 (607)
+ ||+.+..+..+.+++.+.+.+. ....... ...+++.+. ....+.......+ ..+++.++...+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (355)
T TIGR00896 260 KDQRGIVAVLAVLQLVGLCGLLFA------------PMHGLWA-WALVLGLGQ-GGAFPLALTLIGLRSRQAAQAAALSA 325 (355)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh------------hhhHHHH-HHHHHHHhh-hhHhHHHHHHHHHhccCHHHHHHHHH
Confidence 4 5666666666666655544431 0111111 222222222 2223443344443 344567789999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 511 IVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 511 ~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
+.+.+++++..++|.+.|.+.|+.|.
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=220.15 Aligned_cols=384 Identities=14% Similarity=0.134 Sum_probs=242.5
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R 122 (607)
.+..++.+.. |+|- +.+..|+.+...++.+++.++.|+++|.||||.+++.+.++..+|+++++.++|...++.+-
T Consensus 63 ~a~~l~~I~~---diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~ 138 (599)
T PF06609_consen 63 PASILPYINA---DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM 138 (599)
T ss_pred cHHHHHHHHH---hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence 3556677776 7765 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH--hcC
Q psy10231 123 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM--HAV 196 (607)
Q Consensus 123 ~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~--~~~ 196 (607)
.+.|+|.|........++|..|.|.|....++...........++.++..+ +|||.|++.++...+.+++. +.-
T Consensus 139 ~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 139 VLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 999999877777666689999999998887777766666666677777665 89999999998877765543 334
Q ss_pred CCChhhHhhcc-ccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHH
Q psy10231 197 PETPSWLARQG-MAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLI 275 (607)
Q Consensus 197 pes~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~ 275 (607)
|++.+.++.++ ++.+.++ -.++.+.+...+.+.
T Consensus 219 PP~~~~~~~~~~s~~~~l~----------------------------------------------~lD~IG~~L~~~Gl~ 252 (599)
T PF06609_consen 219 PPPRAQLHGRKLSKREQLK----------------------------------------------ELDWIGIFLFIAGLA 252 (599)
T ss_pred CCchhhhccccCcHHHHHH----------------------------------------------HhhHHHHHHHHHHHH
Confidence 54432221111 1111111 112233333333333
Q ss_pred HHHH----HHH--HhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy10231 276 VYSL----GYI--VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKV 349 (607)
Q Consensus 276 ~~~~----~~~--~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (607)
..++ +.. ..|+.+-+++.+..-+.++..+.+.|.- ..
T Consensus 253 LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~--~~----------------------------------- 295 (599)
T PF06609_consen 253 LFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF--GA----------------------------------- 295 (599)
T ss_pred HHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh--cc-----------------------------------
Confidence 3333 222 2588888877666665555655655520 00
Q ss_pred hhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCc----chHHHHHHHHHHHHHHHHH
Q psy10231 350 QMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSL----DDYVASIIVAGLRFFMAII 424 (607)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~~~ 424 (607)
.+...-..++|++++.....+ +..+.....++....+.|+..... +.+. .........+++..++.++
T Consensus 296 ---~~~Pl~P~~Lf~~~r~~~~~l----vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i 368 (599)
T PF06609_consen 296 ---PKDPLFPHRLFKDRRGFAALL----VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVI 368 (599)
T ss_pred ---CCCCcCCHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHH
Confidence 001112234565543222222 222222222444445555544332 2222 2345666777888888888
Q ss_pred HhHhhcccCCchh-HHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 425 GSACIQMFSRRAL-ATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 425 ~g~l~d~~grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
.+.+..+++|-|. ++.+..++.+.+..++.. +.++... .+....+.+.+.+... ......+.-..|++
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---------~~~n~~~-~i~~~~l~g~giG~~~-~~~~~~~ql~~p~~ 437 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---------RPDNKNA-AIAFLVLAGFGIGGIL-VPAIVIAQLIVPDE 437 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---------cCCCcch-HHHHHHHHHHhHHHHH-HHHHHeeEeeeCch
Confidence 9999988887544 456655555544444331 1112222 2222222222222222 22335556678999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcHHHH
Q psy10231 504 VRGIMGGIVCSLGYLFIFTTVKMYPDLM 531 (607)
Q Consensus 504 ~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 531 (607)
.-+++.|+..+++.+|+.++..++..+.
T Consensus 438 ~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 438 DIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999988876544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=219.33 Aligned_cols=362 Identities=12% Similarity=0.058 Sum_probs=227.6
Q ss_pred hhHHHhhhcccccccccccccc-ccCCCcccccCccchhHHHHHHHH-HhhHhhhHHHHhhhhhcCchhh-hhhhhHHHH
Q psy10231 28 SWIGKLHCNNLTHAIPSILIPQ-LQKPSSIISISSDDASWIASLGVI-STPVGSLFAGIFMDLLGRKTTV-QLTAIPFII 104 (607)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l-~~~i~~~~~g~l~Dr~Grr~~l-~~~~~l~~~ 104 (607)
..+...++.++......+.+|. +.+ ++|.+.++.|++.+...+ +..++.++.++ +||+||||.+ +.+.++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 19 AFLIVAFLTGIAGALQTPTLSIFLTD---EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence 3344456667776666666665 455 899999999999876655 66666655666 9999999875 456666678
Q ss_pred HHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCcc--ccccchhhHHHHHHHHHHHHHhhhh----hHHH
Q psy10231 105 GWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDR--GYLSAFGPVFVSLGVLIVYSLGYIV----TWQY 177 (607)
Q Consensus 105 ~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~ 177 (607)
+..+.+++++++.+++.+.+.|...+...+ ...++.|+.++++| +...+..+.+.++|.++||.+++.+ |||.
T Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~ 174 (393)
T PRK15011 95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTV 174 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence 888888999999987776655555567777 88888888776655 3445778888899999999998777 9999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCC
Q psy10231 178 TSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPND 257 (607)
Q Consensus 178 ~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~ 257 (607)
.|++.++..++..+.
T Consensus 175 ~f~~~~~~~~~~~~~----------------------------------------------------------------- 189 (393)
T PRK15011 175 MYLSAAVAFIVCGVM----------------------------------------------------------------- 189 (393)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999988777665542
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhh
Q psy10231 258 RGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVAD 337 (607)
Q Consensus 258 r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (607)
..+++||.++. ++ ++.. +
T Consensus 190 --------------------------------------------~~~~~~~~~~~---~~--~~~~---------~---- 207 (393)
T PRK15011 190 --------------------------------------------VWLFLPSMRKE---LP--LATG---------T---- 207 (393)
T ss_pred --------------------------------------------HHhhcCccCCC---Cc--cccc---------c----
Confidence 23333443210 00 0000 0
Q ss_pred hHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHH
Q psy10231 338 AELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVA 415 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~ 415 (607)
. +. ..++++.....+..... ..........+.|.++++ .+.+.. .........
T Consensus 208 ---------------~---~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~ 262 (393)
T PRK15011 208 ---------------L---EA---PRRNRRDTLLLFVICTL----MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAA 262 (393)
T ss_pred ---------------c---cc---cccccccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 00 00111111111111111 112234455677877754 466543 344445555
Q ss_pred HHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhh
Q psy10231 416 GLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVM 495 (607)
Q Consensus 416 ~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (607)
+..+++.++.|+++||++||+.+..+.....+....+.. . +..+..+....+.....+.. .+....+
T Consensus 263 ~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~l~~~~l~~~~~g~~-~~~~~~~ 329 (393)
T PRK15011 263 GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---A---------HSPAILLGLQLLNAIYIGIL-GGIGMLY 329 (393)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---H---------hhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 667788999999999999998776655444333222211 0 11122222222111121111 1223466
Q ss_pred hccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccC
Q psy10231 496 IAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPE 560 (607)
Q Consensus 496 ~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (607)
..|.+|++ |+++.++.+...++|..+++.+.|.+.+..|+...+++.+++++++.+..+ ..||
T Consensus 330 ~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 330 FQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 78888864 899999999999999999999999999988998888777766666655544 3354
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=222.49 Aligned_cols=365 Identities=10% Similarity=0.027 Sum_probs=236.3
Q ss_pred hhcccccccc-ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcC-chhhhhhhhHHHHHHHHHHh
Q psy10231 34 HCNNLTHAIP-SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGR-KTTVQLTAIPFIIGWTIITV 111 (607)
Q Consensus 34 ~~~~~~~~~~-~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Gr-r~~l~~~~~l~~~~~~~~a~ 111 (607)
++.-...+.. .++.+.+.+ ++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 455556666 899999999999999999999999999999999965 77888889998899999999
Q ss_pred ccchhHHHHHHHHHhhhhhhHhh-hHhHHh--------hccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHH
Q psy10231 112 SKGFTLLCVGRFITGMAIGMSSA-CYVYVA--------EICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYT 178 (607)
Q Consensus 112 a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~--------e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~ 178 (607)
.+|++.+.+.|++.|++.+...+ ..++.. |......|.+..+. +|..+++.+++.+ .|+.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~~- 161 (418)
T TIGR00889 89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNIQ- 161 (418)
T ss_pred hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhHH-
Confidence 99999999999999998877766 555432 22333345555552 4555556555554 3443
Q ss_pred HHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCc
Q psy10231 179 SAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDR 258 (607)
Q Consensus 179 f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r 258 (607)
|++.++..++..++.+
T Consensus 162 f~~~~~~~~~~~~~~~---------------------------------------------------------------- 177 (418)
T TIGR00889 162 LYITAGSSALLGVFAL---------------------------------------------------------------- 177 (418)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 4455554444444222
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhh
Q psy10231 259 GYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADA 338 (607)
Q Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (607)
.+||+|+- ++++..+.+
T Consensus 178 ----------------------------------------------~~~e~~~~--~~~~~~~~~--------------- 194 (418)
T TIGR00889 178 ----------------------------------------------TLPDIPVA--KSTAKMSIK--------------- 194 (418)
T ss_pred ----------------------------------------------cCCCCCCC--ccccccCHH---------------
Confidence 34443310 000000000
Q ss_pred HHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc---------chHH
Q psy10231 339 ELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL---------DDYV 409 (607)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~ 409 (607)
+. ...+.++.+|+|+++..++..++... .......+.+.++++.+.+. ....
T Consensus 195 -------------~~-~~~~~~~~~k~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 255 (418)
T TIGR00889 195 -------------VM-LGLDAFILFKNKRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASI 255 (418)
T ss_pred -------------HH-hhhhHHHHhcCCCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHH
Confidence 00 00122345667766543333222222 12233455566666655321 2355
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCC-hHHHHHHHHHHHHHHhcc
Q psy10231 410 ASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLN-WIPLACILANVCASMLGM 488 (607)
Q Consensus 410 ~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 488 (607)
...+..+..+++.+..+++.||+|+|+.+..+.++..+...++.... ..... +......++.+...+ ..
T Consensus 256 ~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~---------~~~~~~~~l~l~~~l~g~~~~-~~ 325 (418)
T TIGR00889 256 WMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD---------PEYFGYALLFLSMIVYGCAFD-FF 325 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---------cchhhHHHHHHHHHHHHHHHH-HH
Confidence 66667778888999999999999999999988887777665554310 00111 112222222332222 22
Q ss_pred chhhhhhhccccCccchhhHHHHHH-HHHHHHHHHHhhhcHHHHHhh------hhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 489 LQLPWVMIAELFPLSVRGIMGGIVC-SLGYLFIFTTVKMYPDLMYLL------NMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 489 ~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~i~~~i~~~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.+.. ||+..|.+.+++.++++++.++++||+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444578899999999999999997 567899999999999999984 477788888888888888888888876
Q ss_pred CCC
Q psy10231 562 QGK 564 (607)
Q Consensus 562 ~~~ 564 (607)
++.
T Consensus 406 ~~~ 408 (418)
T TIGR00889 406 HNA 408 (418)
T ss_pred ccC
Confidence 543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=217.50 Aligned_cols=350 Identities=12% Similarity=-0.020 Sum_probs=242.6
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhh----hhhhhHHHHHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTV----QLTAIPFIIGWTII 109 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l----~~~~~l~~~~~~~~ 109 (607)
+...+..+...+.+|.+.+ ++|.|..++|++.+++.++..++++++|+++||+|||+.. ..+..+..+ ..+
T Consensus 14 ~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 3344455666777777777 9999999999999999999999999999999999985433 222222222 344
Q ss_pred HhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHH
Q psy10231 110 TVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAV 184 (607)
Q Consensus 110 a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~ 184 (607)
..+++++.+++.|+++|.+.+...| ..++..|+ +++|++..+....+.++|.++++.+++.+ |||..|++..+
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 5788999999999999999988888 88887664 57889999999999999999999988877 99999887654
Q ss_pred HHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 185 VALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 185 ~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
..++..+
T Consensus 167 ~~~~~~~------------------------------------------------------------------------- 173 (382)
T TIGR00902 167 GLAFMLI------------------------------------------------------------------------- 173 (382)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 4222222
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
.....|+.++ +++ ++.
T Consensus 174 -------------------------------------~~~~~~~~~~----~~~-~~~---------------------- 189 (382)
T TIGR00902 174 -------------------------------------GFLIKPTIPP----KDA-IPE---------------------- 189 (382)
T ss_pred -------------------------------------HHHcCCCCCC----Ccc-ccc----------------------
Confidence 1111121110 000 000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAI 423 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 423 (607)
++.+..++.++.+|+|+++...+..++ ..........+.|.++++.|.+.. .+.......+..+++..
T Consensus 190 ------~~~~~~~~~~~~l~~~~~~~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~ 258 (382)
T TIGR00902 190 ------DESQGDSAFIALLKNPMNLRFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFA 258 (382)
T ss_pred ------cccccchhHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 000111234566777765543322222 222355666788888888777554 45556667778888899
Q ss_pred HHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc
Q psy10231 424 IGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503 (607)
Q Consensus 424 ~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 503 (607)
+.+++.||+|+|+.+..+.+...+....++.. +..+..+....+.+..++.. .+....++.+. |++
T Consensus 259 ~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~ 324 (382)
T TIGR00902 259 FSNKLFQNCSARDLLLISAIACVGRWAIIGAI------------EAFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGS 324 (382)
T ss_pred HhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHh
Confidence 99999999999999998888888887766541 22233333444444444443 34455778887 999
Q ss_pred chhhHHHHHHH-HHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 504 VRGIMGGIVCS-LGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 504 ~r~~~~g~~~~-~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
.|++++++.+. ...+|..+++.+.|.+.|..|. ..|+..+.+++++.++
T Consensus 325 ~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 325 EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999999864 5568999999999999999986 5677777777765444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=220.88 Aligned_cols=331 Identities=15% Similarity=0.133 Sum_probs=214.2
Q ss_pred ccccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc-chh
Q psy10231 39 THAIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK-GFT 116 (607)
Q Consensus 39 ~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~-~~~ 116 (607)
+.....+..|. +++ ++|+|+.+.+++.+.+.+++.+++++.|+++||+|||++++++.++..++.+++++++ +++
T Consensus 16 ~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (366)
T TIGR00886 16 VWFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS 92 (366)
T ss_pred HHHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44455677784 777 9999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh--------------hHHHHHH-H
Q psy10231 117 LLCVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV--------------TWQYTSA-A 181 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l--------------~Wr~~f~-~ 181 (607)
.+++.|+++|++.+...+...++.|++|+++|+++.++.....++|..+++.++..+ +||+.|+ .
T Consensus 93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~ 172 (366)
T TIGR00886 93 VLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172 (366)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence 999999999999665433889999999999999999999866666666665554322 4787773 3
Q ss_pred hHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 182 CAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
.++...+..++
T Consensus 173 ~~~~~~~~~~~--------------------------------------------------------------------- 183 (366)
T TIGR00886 173 PAGILLLPALL--------------------------------------------------------------------- 183 (366)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 34333332221
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
.....+|+|+. +.++.+...+ +.....
T Consensus 184 ----------------------------------------~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~----- 210 (366)
T TIGR00886 184 ----------------------------------------IFFVGADTPPG-----KPATGKLSFK---GARWSV----- 210 (366)
T ss_pred ----------------------------------------HHHhcccCCcc-----cccchhcccc---cccccc-----
Confidence 22223333210 0000000000 000000
Q ss_pred HHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRF 419 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~ 419 (607)
.+...+..++.+++++.+...+. . +......+....+.|.++++ .|.+.. ......+..+.++
T Consensus 211 ----------~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 275 (366)
T TIGR00886 211 ----------GTGALGDQLKVFRDRHTWILALL-Y----SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGS 275 (366)
T ss_pred ----------cchhHHHHHHHHhccchhhHHHH-H----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 00001133456666654432221 1 12222345667777888865 366443 4556667778888
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++.++.+++.||+|+|+.+..+......+..++..... ++...+........+....+.+ .+..+.++.|.
T Consensus 276 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 346 (366)
T TIGR00886 276 LARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--------SPLSLAVFIVLFVALFFFSGAG-NGSTFALVPHI 346 (366)
T ss_pred HHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--------CcchHHHHHHHHHHHHHHhccc-cchhhhcchhh
Confidence 99999999999999988777666555555444433110 0002222222233333333333 34456778888
Q ss_pred cCccchhhHHHHHHHHHHHH
Q psy10231 500 FPLSVRGIMGGIVCSLGYLF 519 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~ 519 (607)
.| +.+|++.|+.+.++++|
T Consensus 347 ~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 347 FR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ch-hhcccHHHHHHHhccCC
Confidence 87 57899999999888765
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=220.58 Aligned_cols=463 Identities=13% Similarity=0.035 Sum_probs=259.9
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc------cchhH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS------KGFTL 117 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a------~~~~~ 117 (607)
+...|.+++ ++|+|..|.+++.+.. .....++++.|++.||+|||++++++.+++.++.++++++ ++++.
T Consensus 47 sv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 47 NLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 456678888 9999999999999874 4455678889999999999999999999999999999998 68999
Q ss_pred HHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHH-HHHHhhhh--hHHHHHHHhHHHHHHHHHHH
Q psy10231 118 LCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLI-VYSLGYIV--TWQYTSAACAVVALVGFAAM 193 (607)
Q Consensus 118 l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i-g~~l~~~l--~Wr~~f~~~~~~~~~~~~~~ 193 (607)
+++.|+++|+|.+...+ +...+.+++| ++||++.++...+.++|..+ +++...++ +|+..|++.+++.++..++.
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999986 78999999999999999975 55555555 89999999888877765543
Q ss_pred -hc--CCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 194 -HA--VPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 194 -~~--~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
++ .|+.+++..++++.+++.+..++.-+...+.+ .+| .|.+......+...
T Consensus 202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q-------------------------~~p-~~~f~~~~~i~~~l 255 (591)
T PTZ00207 202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQ-------------------------KAP-MWRFVYGFVILIIL 255 (591)
T ss_pred HhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhc-------------------------CCC-ceehhhHHHHHHHH
Confidence 33 46666665444433444333222111111111 111 11121111111111
Q ss_pred HHHH-HHHHHHHH----HhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 271 LGVL-IVYSLGYI----VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 271 ~g~~-~~~~~~~~----~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
...+ +...+... ..-+..+....+..++.+ ....+|- +++..+.+.++. +. ++.... +.+.+..+.+.
T Consensus 256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~-p~l~ip~--~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~ 328 (591)
T PTZ00207 256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIF-PFMAFPL--TTFDGKRPHDDS-DG-KAKEHV--EAGEEVSAAED 328 (591)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHhhhH--HHhccCCcCCCc-cc-cccccc--ccccccccccc
Confidence 1111 11111110 122222222111111111 1011111 111111000000 00 000000 00000000000
Q ss_pred H--HH-Hh-hcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCcch--HH-HHHHHHHH
Q psy10231 346 S--LK-VQ-MAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSLDD--YV-ASIIVAGL 417 (607)
Q Consensus 346 ~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~ 417 (607)
+ .. .+ .......++.+.+++.++|..+ ...++.......+...+.++.+.+ |.+.+. .. ...+.++.
T Consensus 329 ~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~-----~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~ 403 (591)
T PTZ00207 329 KVVETDVDYIAPQFQETFIEGLKTARLWCLL-----WSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVG 403 (591)
T ss_pred ccccccccCCCCCCcchHHHHHhchhHHHHH-----HHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHH
Confidence 0 00 00 1112223778888877766422 222333333455566677777777 663322 22 67888999
Q ss_pred HHHHHHHHhHhhcccCC--------chhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccc
Q psy10231 418 RFFMAIIGSACIQMFSR--------RALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGML 489 (607)
Q Consensus 418 ~~~~~~~~g~l~d~~gr--------r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (607)
+.+|.+..|++.....+ |+..+....++.++.+++.+. .+.....+..++.+...+..+
T Consensus 404 ~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~- 470 (591)
T PTZ00207 404 SAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT------------LPKAALPLPYFIAAFANGFMA- 470 (591)
T ss_pred HHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH------------CCccHhHHHHHHHHHHhhHhH-
Confidence 99999999987722111 122222222244444444331 111233333444444444443
Q ss_pred hhhhhhhccccCccchhhHHHHHHHHHHHHHHHH-hhhcHHHHHhh-------------hhHHHHHHHHHHHHHHHHHhh
Q psy10231 490 QLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTT-VKMYPDLMYLL-------------NMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 490 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~-~~i~~~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~ 555 (607)
++....+.|+|. +.-|+-.-+.....-+|+.+- ..+.|.+.|.- .+..+|.+.+++++++.+...
T Consensus 471 ~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 471 ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 455588999999 666666655555555666555 34566666542 245589999999999888876
Q ss_pred hcccCCCC
Q psy10231 556 AFLPETQG 563 (607)
Q Consensus 556 ~~~~~~~~ 563 (607)
...-++|+
T Consensus 550 ~l~~R~r~ 557 (591)
T PTZ00207 550 YVHLQYRR 557 (591)
T ss_pred heeeehHH
Confidence 66555554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=218.25 Aligned_cols=366 Identities=14% Similarity=0.064 Sum_probs=221.3
Q ss_pred hccccccccccccccc-cCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH---
Q psy10231 35 CNNLTHAIPSILIPQL-QKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT--- 110 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l-~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a--- 110 (607)
+..+..+...+.+|.. .+ ++|.+..+.|++.+.+.++..+++++.|+++||+|||++++++..+..++.....
T Consensus 21 ~~~~~~~~~~~~~~~~l~~---~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 97 (420)
T PRK09528 21 FFFFIWSSWFSFFPIWLHD---INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433 34 6899999999999999999999999999999999999999887666554433221
Q ss_pred hccc-----hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHH
Q psy10231 111 VSKG-----FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAA 181 (607)
Q Consensus 111 ~a~~-----~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~ 181 (607)
.++. ....++++++.|.+.....+ ...+..+ . .+++++..+......++|..+++.+++.+ +|++.|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~ 175 (420)
T PRK09528 98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHH
Confidence 1111 11122333434433333333 2222222 2 34567788888888899999999888877 89999988
Q ss_pred hHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 182 CAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
.+++.++..+..
T Consensus 176 ~~~~~~~~~~~~-------------------------------------------------------------------- 187 (420)
T PRK09528 176 GSGSALILLVLL-------------------------------------------------------------------- 187 (420)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 877776655522
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
.+..+|.++....+ ++.+
T Consensus 188 -----------------------------------------~~~~~~~~~~~~~~---~~~~------------------ 205 (420)
T PRK09528 188 -----------------------------------------FFAKPDAPSTAKVA---NALG------------------ 205 (420)
T ss_pred -----------------------------------------hcccccccchhhhc---cchh------------------
Confidence 12222221100000 0000
Q ss_pred HHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----hCCCcc-hHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED----AGSSLD-DYVASIIVAG 416 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~ 416 (607)
++++....++.++.+|+|.++...+..+..... ......+.|.++.+ .+.+.. .+....+..+
T Consensus 206 -------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (420)
T PRK09528 206 -------ANASAVSLKDALALLKLPKFWFLVLYVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVF 273 (420)
T ss_pred -------cccccccHHHHHHHccCCCeEeehHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 000011112334567777665433322222111 12222234444432 233222 3455566667
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhh
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMI 496 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (607)
...++.++.+++.||+|+|+.+..+.++.++..+++++. ...+..+....+...... ...+....+.
T Consensus 274 ~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~ 340 (420)
T PRK09528 274 LEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------TGPLEVSILKLLHAFEVP-FLLVGVFKYI 340 (420)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 778899999999999999999888877777766665541 122222222222222221 1223344677
Q ss_pred ccccCccchhhHHHH-HHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccC
Q psy10231 497 AELFPLSVRGIMGGI-VCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPE 560 (607)
Q Consensus 497 ~e~~p~~~r~~~~g~-~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (607)
.|.+|++.|+++.+. .++...+|..+++.+.|.+.|..|++..|...+++.++..++.++..++
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999888765 5677889999999999999999999989998888887777666655443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=212.41 Aligned_cols=151 Identities=13% Similarity=0.195 Sum_probs=135.5
Q ss_pred ccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhH
Q psy10231 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117 (607)
Q Consensus 38 ~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~ 117 (607)
+......+.+|.+.+ ++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.+++|++.
T Consensus 22 ~~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (394)
T PRK11652 22 MAQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV 98 (394)
T ss_pred HHHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 344445566777777 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 118 LCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 118 l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
+++.|++.|++.+...+ ...+..|.+++++|+++.+....+..+|..++|.+++.+ +||+.|++.++..++..+
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 99999999999998888 889999999999999999999999999999999888776 899999988776665443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=209.72 Aligned_cols=349 Identities=12% Similarity=0.030 Sum_probs=231.7
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCc----hhhhhhhhHHHHHHHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRK----TTVQLTAIPFIIGWTI 108 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr----~~l~~~~~l~~~~~~~ 108 (607)
.+...+..++..+.+|.+.+ |++.|..+.|++.+++.++..++++++|+++||+||| +.+.+...+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 33444556677777787777 8999999999999999999999999999999999994 3333222221 2233
Q ss_pred HHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhH
Q psy10231 109 ITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACA 183 (607)
Q Consensus 109 ~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~ 183 (607)
...++|++.+++.|++.|++.+...+ ..+++.++ +++|++..+....+.++|..+||.+++.+ +||..|++.+
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 44568899999999999999999988 88877776 46688888889988899999999999877 9999998777
Q ss_pred HHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccc
Q psy10231 184 VVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSA 263 (607)
Q Consensus 184 ~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~ 263 (607)
+..++..+
T Consensus 166 ~~~~~~~~------------------------------------------------------------------------ 173 (382)
T PRK11128 166 AGVASMLL------------------------------------------------------------------------ 173 (382)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 54443333
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHH
Q psy10231 264 FGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEI 343 (607)
Q Consensus 264 ~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (607)
..+..||.++ +++.++
T Consensus 174 --------------------------------------~~~~~~~~~~----~~~~~~---------------------- 189 (382)
T PRK11128 174 --------------------------------------GQLLRPTIMP----QGESRQ---------------------- 189 (382)
T ss_pred --------------------------------------HHHccCCCCC----cccccc----------------------
Confidence 1112233210 000000
Q ss_pred HHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHH
Q psy10231 344 QQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMA 422 (607)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 422 (607)
+.++...++++++|+|+.+......+.... .......+.|.+.++.|.+.+ .+.......+..++..
T Consensus 190 -------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 257 (382)
T PRK11128 190 -------QESAGWPAWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIF 257 (382)
T ss_pred -------ccccccchHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHH
Confidence 000012345677777766653332222222 133455566777777776543 4555556667788888
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
.+.+++.||+++|+.+..+....++..+.++.. +..+..+...++.+...... .+....+..+. ++
T Consensus 258 ~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~ 323 (382)
T PRK11128 258 AFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PG 323 (382)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CH
Confidence 999999999999999888887777766555431 22333333344333333332 34444666665 45
Q ss_pred cchhhHHHHHHHH-HHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHH
Q psy10231 503 SVRGIMGGIVCSL-GYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAM 551 (607)
Q Consensus 503 ~~r~~~~g~~~~~-~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 551 (607)
+.+++..++.+.. ..+|..++|.+.|.+.|..|.. .++..+.+.+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 324 SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 5568888887644 4567789999999999998864 5555555555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=213.69 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=127.4
Q ss_pred ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhccchhH-HH
Q psy10231 42 IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSKGFTL-LC 119 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~~~~~-l~ 119 (607)
+...+...+.+ ++|.++.+.+++.+.+.....+..+++|+++|| +||||+++++.+++.+++++++++++... ++
T Consensus 33 ~~~~l~~yl~~---~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~ 109 (489)
T PRK10207 33 VQGILAVFFVK---QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIF 109 (489)
T ss_pred HHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 33455566667 899999999999999998888999999999999 99999999999999999999999987555 45
Q ss_pred HHHHHHhhhhhhHhh-hHhHHhhccCCC--ccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 120 VGRFITGMAIGMSSA-CYVYVAEICLPN--DRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 120 ~~R~l~G~g~g~~~~-~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
++|+++|+|.|...+ ..+++.|.+|++ +|+++.+++..+.++|..+||.+++++ |||+.|++.++..++..+
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 899999999999999 999999999877 458899999999999999999988888 999999997554333333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=208.29 Aligned_cols=360 Identities=13% Similarity=0.090 Sum_probs=232.3
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-----cCch-hhhhhhhHHHHHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-----GRKT-TVQLTAIPFIIGW 106 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-----Grr~-~l~~~~~l~~~~~ 106 (607)
.+.-|...+.....+|..-+ +.|.|.+++|++...... .+..+++|+++||+ |||| .++++.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34456666677778888888 789999999999777776 58899999999999 8876 6888888888888
Q ss_pred HHHHhc---cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHH
Q psy10231 107 TIITVS---KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQY 177 (607)
Q Consensus 107 ~~~a~a---~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~ 177 (607)
.+.++. .+++.+++..++.++..+...+ ..+++.|+.|+++|+++.++...+..+|.++++.++..+ +||.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 887877 3578888888888999999999 999999999999999999999999999999998876654 7999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCC
Q psy10231 178 TSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPND 257 (607)
Q Consensus 178 ~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~ 257 (607)
.|++.++..++..+.
T Consensus 163 ~f~i~a~~~l~~~l~----------------------------------------------------------------- 177 (402)
T PRK11902 163 TYLLMAGLMLAGALT----------------------------------------------------------------- 177 (402)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 998888776654442
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhh
Q psy10231 258 RGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVAD 337 (607)
Q Consensus 258 r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (607)
.+++||+++. +++.++.++
T Consensus 178 ---------------------------------------------~~~~~e~~~~---~~~~~~~~~------------- 196 (402)
T PRK11902 178 ---------------------------------------------TLWAPEPEVP---ARPPRSLGE------------- 196 (402)
T ss_pred ---------------------------------------------HHhcCCCccc---ccccchhHH-------------
Confidence 2233443211 000000000
Q ss_pred hHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcch-HHHHHHHH-
Q psy10231 338 AELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDD-YVASIIVA- 415 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~- 415 (607)
+..+++++.+++|..+..+...++..... . .......+.+.++.|.+.+. +......+
T Consensus 197 ----------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~-~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~ 256 (402)
T PRK11902 197 ----------------AVVGPLRDFFSRRGAWALLLLIVLYKLGD-A---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGL 256 (402)
T ss_pred ----------------HHHHHHHHHHhCcCHHHHHHHHHHHHhHH-H---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHH
Confidence 00113445677776554333222222211 1 11112223333445665442 33333333
Q ss_pred HHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHH---HHHHHHhccchhh
Q psy10231 416 GLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILA---NVCASMLGMLQLP 492 (607)
Q Consensus 416 ~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 492 (607)
...+++.++++++.||+++|+.+..+.....+..+.+...... .+..+.......+ ..........+..
T Consensus 257 ~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 328 (402)
T PRK11902 257 AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--------PKHLWTMALAIGIENLCGGMGTAAFVALL 328 (402)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988776665555444333211111 0112222222211 1112222223444
Q ss_pred hhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 493 WVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 493 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
..++.+.+|.+. .++.+.+..++..+++.+.|.+.|..|+...|...+.+++++.++.+
T Consensus 329 ~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 329 MALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 466777766554 45555566677776777899999999999888888887777766643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=241.38 Aligned_cols=357 Identities=13% Similarity=0.014 Sum_probs=225.7
Q ss_pred cccccccccccCCCcccccC--ccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH---Hhccch
Q psy10231 41 AIPSILIPQLQKPSSIISIS--SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII---TVSKGF 115 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s--~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---a~a~~~ 115 (607)
.....+.+.+.. +++.+ ....+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..++++
T Consensus 27 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~ 103 (1146)
T PRK08633 27 GHKILIQNTLIK---AYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWF 103 (1146)
T ss_pred HHHHHHHHHHHH---HcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 333444455544 44444 3447999999999999999999999999999999999887766555544 445789
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-h------------HHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-T------------WQYTSAA 181 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~------------Wr~~f~~ 181 (607)
+.++++|+++|++.+...+ ..+++.|++++++|++++++...+.++|.++|+.+++++ . |++.+.+
T Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (1146)
T PRK08633 104 WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGL 183 (1146)
T ss_pred HHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999998876 2 2222222
Q ss_pred hHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccc
Q psy10231 182 CAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~ 261 (607)
..+...+..
T Consensus 184 ~~~~~~~~~----------------------------------------------------------------------- 192 (1146)
T PRK08633 184 VLLAVAVLG----------------------------------------------------------------------- 192 (1146)
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 222211111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHH
Q psy10231 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELK 341 (607)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (607)
++..+.+||+|.....+++ ++.. ....
T Consensus 193 --------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~ 219 (1146)
T PRK08633 193 --------------------------------------LIFAYRLPKVPAAAPEVFD-KKKY--------------LFPK 219 (1146)
T ss_pred --------------------------------------HHHHhcCcCCCCCCccccc-cccc--------------ccHH
Confidence 1123334554321100000 0000 0000
Q ss_pred HHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc--hHHHHHHHHHHH
Q psy10231 342 EIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD--DYVASIIVAGLR 418 (607)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~ 418 (607)
. ....++.+++++..+..++... +.. ........+.|.++.+ .|.+.. .+......+++.
T Consensus 220 ~------------~~~~~~~l~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~ 282 (1146)
T PRK08633 220 L------------LWRNLKLLRSDRVLWLAIIGLS-YFW----FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGI 282 (1146)
T ss_pred H------------HHHHHHHHhcCcHHHHHHHHHH-HHH----HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 0 0012334555554443222222 211 1234455566777654 466443 455667777888
Q ss_pred HHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcc
Q psy10231 419 FFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAE 498 (607)
Q Consensus 419 ~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 498 (607)
+++.++.+++.||+++++.+..+.++.+++.+++.+. ...+..++..++++.+.+. ..+...+++.+
T Consensus 283 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 349 (1146)
T PRK08633 283 GIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------------PSLASVLVLFFLFGFSAGL-FIVPLNALIQF 349 (1146)
T ss_pred HHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhh
Confidence 8999999999999999888877777666666555441 1122223333333333332 23445688889
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh-hhhHHHHHHHHHHHHHHHHHh
Q psy10231 499 LFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL-LNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 499 ~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~ 554 (607)
..|++.||+++|+.+++.+++..+++.+.+.+... .++...+++.+.++++..++.
T Consensus 350 ~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 350 RAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred cCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777666544331 233334444444444433333
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=197.07 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=109.3
Q ss_pred cCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhhhHhH
Q psy10231 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSACYVY 138 (607)
Q Consensus 59 ~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~~~~~ 138 (607)
.+..-.|.+.|+|.+.+.+.++.+|.++||+|||.++++|++..++..++.+++.||..++++|++.|+..|...+..++
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAi 144 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAI 144 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999977777799999999999999999
Q ss_pred HhhccCCCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 139 VAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 139 i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
++|.+++|+|++.++..+..+++|.++||.+|+++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 99999999999999999999999999999999987
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=223.56 Aligned_cols=406 Identities=13% Similarity=0.118 Sum_probs=271.6
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS 112 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a 112 (607)
++.+|+..... .+.+.+++ +++.+..+++|+.++......+..++.+.+.||+|.|++.++|.++..++.++.+|+
T Consensus 56 ~~~~g~~~~~G-v~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~ 131 (509)
T KOG2504|consen 56 LSTDGLINSFG-LLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA 131 (509)
T ss_pred Hhhhcchheeh-hhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 67778888 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHH-HHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHH
Q psy10231 113 KGFTLLCVG-RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVA 186 (607)
Q Consensus 113 ~~~~~l~~~-R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~ 186 (607)
+++|++++. -++.|+|.|..+. ..+.+. .+.+++|+.+.++...+.++|.++-|.+...+ |||+.+++.+.+.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~ 210 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS 210 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999887 5999999999999 777777 55578999999999999999999999888877 9999999998888
Q ss_pred HHHHHHHhcC-CCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 187 LVGFAAMHAV-PETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 187 ~~~~~~~~~~-pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
+-..++...+ |.+++...++.++.+. ... ..|....+
T Consensus 211 l~~~~~~~~~rp~~~~~~~~~~~~~~~---~~~------------------------------~~~~~~~~--------- 248 (509)
T KOG2504|consen 211 LNVLVAGALLRPLSPPKKPNEEKDLRN---SAA------------------------------SVESTPKP--------- 248 (509)
T ss_pred HHHHHHHHHcCCCCcCCCchhhhhhcc---ccc------------------------------cccccccc---------
Confidence 7666554333 3333221110000000 000 00000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
.....++ +.. ...+....+..+.++
T Consensus 249 ------------------------------------~~~~~~~---------~~~----------~~~~~~~~~~~~~~~ 273 (509)
T KOG2504|consen 249 ------------------------------------VELRISE---------RDS----------GLKKLSLSNLATLKR 273 (509)
T ss_pred ------------------------------------ccccccc---------CCC----------CCCcccccchhhhhh
Confidence 0000000 000 000000001111111
Q ss_pred HHHHhhcCCccch----hhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDH----CAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFF 420 (607)
Q Consensus 346 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 420 (607)
..++.+....+.. ..++++++.+ +...+.......+++....++|.+.++.+++. ++.....+.++..++
T Consensus 274 ~~~~~~~~~~~~~~~~~d~~ll~~~~f-----l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~ 348 (509)
T KOG2504|consen 274 GPDKWRNSPLQAFLSMLDLSLLKDPKF-----LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDII 348 (509)
T ss_pred CCccccccchhhhhhhhhHHHHcCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhh
Confidence 1111110011111 2567777533 33444444455567888899999998888855 467888999999999
Q ss_pred HHHHHhHhhcccCCc--hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcc
Q psy10231 421 MAIIGSACIQMFSRR--ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAE 498 (607)
Q Consensus 421 ~~~~~g~l~d~~grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 498 (607)
+.++.|++.|+...+ ....++.+..+++...+.+ ...+..+...+++.+.............+.|
T Consensus 349 gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~-------------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~ 415 (509)
T KOG2504|consen 349 GRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF-------------ATTYVGLIVFSILFGFCVGSFSSLTPVILVD 415 (509)
T ss_pred hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998843 3444444555555433333 2233333333333333333444555568899
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 499 LFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 499 ~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
+.+.+.-..+.|+...+..++..++|++.|.+.|..+ |...|+..+...+++..+. +..+
T Consensus 416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 9999999999999999999999999999999999888 6667777766666666553 3434
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=209.49 Aligned_cols=358 Identities=13% Similarity=0.108 Sum_probs=227.6
Q ss_pred cccccccccccc-cCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH---Hhc--
Q psy10231 39 THAIPSILIPQL-QKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII---TVS-- 112 (607)
Q Consensus 39 ~~~~~~~~~p~l-~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---a~a-- 112 (607)
..+...+.+|.. .+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+.+...++.... .+.
T Consensus 17 ~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (396)
T TIGR00882 17 IMSAYFPFFPIWLHD---VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPL 93 (396)
T ss_pred HHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334444555543 44 689999999999999999999999999999999999999988776665543322 112
Q ss_pred ---cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHH
Q psy10231 113 ---KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVV 185 (607)
Q Consensus 113 ---~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~ 185 (607)
+.+..+++.|++.|++.+...+ ...+..|..+ +++...+......++|..+++.+++.+ +||+.|++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~ 171 (396)
T TIGR00882 94 LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGF 171 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHH
Confidence 2234556778999999988888 7777777533 345566677777788888888888766 999999988877
Q ss_pred HHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchh
Q psy10231 186 ALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFG 265 (607)
Q Consensus 186 ~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~ 265 (607)
.++..++.
T Consensus 172 ~~~~~~~~------------------------------------------------------------------------ 179 (396)
T TIGR00882 172 ALILMLLL------------------------------------------------------------------------ 179 (396)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 77665421
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 266 ~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
....||+|.. ++.++. .+
T Consensus 180 -------------------------------------~~~~~~~~~~-------~~~~~~----~~-------------- 197 (396)
T TIGR00882 180 -------------------------------------MFAKPKAPSS-------ATVANA----LG-------------- 197 (396)
T ss_pred -------------------------------------HHhCCCCchh-------hhhhcc----cc--------------
Confidence 1222332210 000000 00
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA----GSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~~~ 420 (607)
.+++..+.++..+.+|+|+.+...+..+... ..+.....+.+.++++. +.+.. .+....+..+...+
T Consensus 198 ---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~ 269 (396)
T TIGR00882 198 ---ANASAFSLKLALELFRQRKFWMFVLYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNAL 269 (396)
T ss_pred ---cccCCCCHHHHHHHHcCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 0001111234456777776554322222111 11233333455555442 22222 34455556677788
Q ss_pred HHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc
Q psy10231 421 MAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF 500 (607)
Q Consensus 421 ~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 500 (607)
+....+++.||+|+|+.+..+..+.++........ ...+.......+.+..... .......+..+..
T Consensus 270 ~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~ 336 (396)
T TIGR00882 270 IMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------TTALEVVILKMLHAFEVPF-LLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 88999999999999999888877777666544331 2222222222222222211 1223335667778
Q ss_pred CccchhhHHHH-HHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q psy10231 501 PLSVRGIMGGI-VCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 501 p~~~r~~~~g~-~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 556 (607)
|++.++++.+. .+....+|+.+++.+.|.+.+..|+...|.+.+++.++..++..+
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766 567889999999999999999999998998888887777665443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=202.12 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=137.6
Q ss_pred ccccccccccCCCcccccCccc-hhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHH
Q psy10231 42 IPSILIPQLQKPSSIISISSDD-ASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCV 120 (607)
Q Consensus 42 ~~~~~~p~l~~~~~~~~~s~~~-~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~ 120 (607)
..+.+.|.+.+ |+|+|+.| .|.+.++++.+++++.++.|.++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 44 n~s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 44 GESFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hHHHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888 99999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHH---HHHHHHHHHh
Q psy10231 121 GRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAV---VALVGFAAMH 194 (607)
Q Consensus 121 ~R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~---~~~~~~~~~~ 194 (607)
.|++.|++.|.......++..++|+++|+++.++...+..+|.+++++++..+ |||+.+.+.-+ ...++++..+
T Consensus 121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877 88876655422 2233333335
Q ss_pred cCCCChh
Q psy10231 195 AVPETPS 201 (607)
Q Consensus 195 ~~pes~~ 201 (607)
++|..++
T Consensus 201 ~LP~~~~ 207 (511)
T TIGR00806 201 FLKRPKR 207 (511)
T ss_pred hCCCCch
Confidence 5564443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=202.36 Aligned_cols=329 Identities=14% Similarity=0.091 Sum_probs=212.6
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-----cCchhh-hhhhhHHHHHHHHHHhc
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-----GRKTTV-QLTAIPFIIGWTIITVS 112 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-----Grr~~l-~~~~~l~~~~~~~~a~a 112 (607)
-.+..++.+|.+.+ |+|+|.++.+++.+. .+...+ .+++|+++||+ ||||.+ +.+.++.+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34556677888888 999999999999766 455554 89999999998 899974 66777888887777777
Q ss_pred ---cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h--------HH
Q psy10231 113 ---KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T--------WQ 176 (607)
Q Consensus 113 ---~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~--------Wr 176 (607)
.+.+.+.+..++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.++++.++..+ + ||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 4566777888889999998889 999999999999999999999999999999999888766 6 88
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCC
Q psy10231 177 YTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPN 256 (607)
Q Consensus 177 ~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~ 256 (607)
..|++.++..++..+..
T Consensus 158 ~~f~i~ai~~l~~~~~~--------------------------------------------------------------- 174 (356)
T TIGR00901 158 YIFFWTALLILPGLLVT--------------------------------------------------------------- 174 (356)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 88888777666544421
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhh
Q psy10231 257 DRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVA 336 (607)
Q Consensus 257 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~ 336 (607)
.+..||+++. +.+.++.++
T Consensus 175 ----------------------------------------------~~~~~e~~~~---~~~~~~~~~------------ 193 (356)
T TIGR00901 175 ----------------------------------------------LFLAKEPQED---ASVPKPLTQ------------ 193 (356)
T ss_pred ----------------------------------------------HHhccCCCcc---cccchhHHH------------
Confidence 1223442110 000000000
Q ss_pred hhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcch-HHHHHHHH
Q psy10231 337 DAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDD-YVASIIVA 415 (607)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 415 (607)
+ ....++++++++..+. ......... ......+....+.|.++++.|.+.+. +......+
T Consensus 194 -----~------------~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~ 254 (356)
T TIGR00901 194 -----A------------VLKPIREFFQRKNMIQ-ALLLLLLIV-LYKLGDSAATVLTTLFLLDMGFSKEEIALVAKING 254 (356)
T ss_pred -----H------------HHHHHHHHHHhcCchH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHH
Confidence 0 0012234444543222 111111111 12233456677788888776765443 33343334
Q ss_pred -HHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhh
Q psy10231 416 -GLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWV 494 (607)
Q Consensus 416 -~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (607)
+..+++.++++++.||+|||+.+..+.++.++....+.+......+.. ......+......++.....+ ...+...+
T Consensus 255 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 332 (356)
T TIGR00901 255 LLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDG-ITFPHLLMLFLTITLEAVTGG-LGTVAFVA 332 (356)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccchHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 567789999999999999999888777776665544433210000000 000111222222222223222 33455668
Q ss_pred hhccccCccchhhHHHHHHHHHH
Q psy10231 495 MIAELFPLSVRGIMGGIVCSLGY 517 (607)
Q Consensus 495 ~~~e~~p~~~r~~~~g~~~~~~~ 517 (607)
+..|.+|++.||+..|+.+...+
T Consensus 333 ~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 333 FLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHhcCCCccHHHHHHHHHHHh
Confidence 99999999999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=230.45 Aligned_cols=347 Identities=12% Similarity=0.064 Sum_probs=223.7
Q ss_pred cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhh---hhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHh
Q psy10231 62 DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL---TAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYV 137 (607)
Q Consensus 62 ~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~---~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~ 137 (607)
...++..+++.+++.++++++|+++||+|||+++.. ..++..+..+.+...+|+++++++|+++|++.+...| ..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 347888899999999999999999999999997533 3333333334444558999999999999999999999 999
Q ss_pred HHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccch
Q psy10231 138 YVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEF 213 (607)
Q Consensus 138 ~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~ 213 (607)
++.|++++++|++++++.+.+.++|.++||.+++++ +|++.|+..++..++.+++.+++|+++..
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 200 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA----------- 200 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC-----------
Confidence 999999999999999999999999999999999988 89998855555555444433334433210
Q ss_pred hhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhH
Q psy10231 214 RYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACA 293 (607)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~ 293 (607)
T Consensus 201 -------------------------------------------------------------------------------- 200 (1140)
T PRK06814 201 -------------------------------------------------------------------------------- 200 (1140)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHH
Q psy10231 294 VVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFF 373 (607)
Q Consensus 294 i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (607)
+.+.+..... .++ ....++.+.+++.++...+
T Consensus 201 ----------------------~~~~~~~~~~--------------~~~------------~~~~~~~~~~~~~~~~~~~ 232 (1140)
T PRK06814 201 ----------------------APDLKIDRNI--------------IRS------------TITLLKYAKADKRIWLAIL 232 (1140)
T ss_pred ----------------------CCCCeeccch--------------HHH------------HHHHHHHHhcCchHHHHHH
Confidence 0000000000 000 0012334455554444222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHH
Q psy10231 374 ILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGI 451 (607)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~ 451 (607)
......+ ....+..+.|.++++ .|.+.. .+......+++.+++.++.+++.|+..+++.+..+.++.++..+.
T Consensus 233 ~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 233 GISWFWL-----VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHHHHHH-----HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 2222211 234566678888875 355443 566777888899999999999998887776665555555444443
Q ss_pred Hhhhhhh--h-ccc-----cCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHH
Q psy10231 452 SGTYEYY--F-SEL-----SMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTT 523 (607)
Q Consensus 452 ~~~~~~~--~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~ 523 (607)
+++.... . ... ........+...+..++++.+.+. ..+...+++.+..|++.||+++|+.+++..++..++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig 386 (1140)
T PRK06814 308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAG 386 (1140)
T ss_pred HHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence 3321000 0 000 000002233333333334333333 334456888999999999999999999999999999
Q ss_pred hhhcHHHHHh-hhhHHHHHHHHHHHHHHHHH
Q psy10231 524 VKMYPDLMYL-LNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 524 ~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~ 553 (607)
+.+.+.+.+. .++...+++.+.+.++.+.+
T Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 387 TIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 9999888743 34444454444443443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=186.22 Aligned_cols=373 Identities=14% Similarity=0.119 Sum_probs=263.6
Q ss_pred HhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHH-
Q psy10231 32 KLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIIT- 110 (607)
Q Consensus 32 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a- 110 (607)
.+++.|+......+++|.+++ .|+++..|.+++..+++.|+.+.+++.|++.+|+|+|+.++.++.+++++..+..
T Consensus 21 lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888999999999 9999999999999999999999999999999999999999999999999999984
Q ss_pred --hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHH
Q psy10231 111 --VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVA 186 (607)
Q Consensus 111 --~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~ 186 (607)
-..+|..++++-++.|.|.+...+ +..+++...++++-.+.+++.+...++|.+++|+++..+ -|-+..-....
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~-- 175 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA-- 175 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH--
Confidence 668899999999999999999999 999999999999999999999999999999999999876 22211000000
Q ss_pred HHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhh
Q psy10231 187 LVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGP 266 (607)
Q Consensus 187 ~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~ 266 (607)
T Consensus 176 -------------------------------------------------------------------------------- 175 (422)
T COG0738 176 -------------------------------------------------------------------------------- 175 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhh--ccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 267 VFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAM--HAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 267 ~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~--~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
............|+.++.......++..... ...|+.+. ..++
T Consensus 176 ------~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----~~~~------------------------ 220 (422)
T COG0738 176 ------QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----AAPS------------------------ 220 (422)
T ss_pred ------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----cccc------------------------
Confidence 0000011112246666665444433333332 33344211 0000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~ 422 (607)
+.+.......+++++|+.+...+..++... .......|++.++.+ .|.+.. +......+..+.++|+
T Consensus 221 ------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG-----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR 289 (422)
T COG0738 221 ------LGASGSAGLSSLFQNKHLRLGVLAIFLYVG-----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR 289 (422)
T ss_pred ------ccccccchHHHHHhChHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 000111145677888876654443333322 356677888888877 565544 4556677778889999
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
+++.++..|+...+.+........+.++...+. .. .+.+......+.+.....|..+....+..|.
T Consensus 290 Fig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~ 355 (422)
T COG0738 290 FIGSALMSRIKPEKYLAFYALIAILLLLAVALI-------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGE 355 (422)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc
Confidence 999999999998888877766555555555441 22 2233333344455556678888999999983
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHH
Q psy10231 503 SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAM 551 (607)
Q Consensus 503 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 551 (607)
+ ....|....+.-.|+++.|++.|++.|..|....+......|.+..
T Consensus 356 ~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 356 H--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred c--ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3 3444555566668999999999999999988776665555555544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=195.59 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=133.0
Q ss_pred cccccccccccccc-cCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhccc
Q psy10231 37 NLTHAIPSILIPQL-QKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSKG 114 (607)
Q Consensus 37 ~~~~~~~~~~~p~l-~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~~ 114 (607)
.+.+....+.+|.. .+ ..++|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++
T Consensus 23 ~~~~~~~~~~L~~yl~~-~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~ 101 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQ-QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY 101 (475)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc
Confidence 34433333444444 33 11289999999999999999999999999999999 89999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCc---cccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPND---RGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVA 186 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~ 186 (607)
++.++++|++.|+|.|...+ ..++++|++++++ |+.+.++++.+.++|..+|+.+++.+ +||+.|++.++..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM 181 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999 9999999998764 88899999999999999999999887 8999999988655
Q ss_pred HHHHHHH
Q psy10231 187 LVGFAAM 193 (607)
Q Consensus 187 ~~~~~~~ 193 (607)
++..+..
T Consensus 182 ~~~~l~~ 188 (475)
T TIGR00924 182 VIGLLTF 188 (475)
T ss_pred HHHHHHH
Confidence 5544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=205.67 Aligned_cols=331 Identities=16% Similarity=0.152 Sum_probs=213.5
Q ss_pred cccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh----hcCch-hhhhhhhHHHHHHHHHHhccc-----
Q psy10231 45 ILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL----LGRKT-TVQLTAIPFIIGWTIITVSKG----- 114 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr----~Grr~-~l~~~~~l~~~~~~~~a~a~~----- 114 (607)
.+.+.+.+ ++|+++.+.|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.+.++
T Consensus 21 ~l~~~~~~---~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~ 97 (437)
T TIGR00792 21 YLLFFYTD---VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG 97 (437)
T ss_pred HHHHHHHH---ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence 45566666 899999999999999999999999999999997 78855 566788888888888877765
Q ss_pred -hhHHHHHHHHHhhhhhhHhh-hHhHHhhccC-CCccccccchhhHHHHHHHHHHHHHhhhh-----------hHHHHHH
Q psy10231 115 -FTLLCVGRFITGMAIGMSSA-CYVYVAEICL-PNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----------TWQYTSA 180 (607)
Q Consensus 115 -~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----------~Wr~~f~ 180 (607)
...+++.+++.+++.+...+ ..++..|..+ +++|++..++...+..+|..+++.+...+ +||+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~ 177 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence 45667788999999888777 7888899874 68899999988888888776655443221 4666666
Q ss_pred HhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccc
Q psy10231 181 ACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGY 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~ 260 (607)
+.+++.++..+
T Consensus 178 i~~~l~~~~~~--------------------------------------------------------------------- 188 (437)
T TIGR00792 178 VLALIGVVSLI--------------------------------------------------------------------- 188 (437)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 55555544433
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHH
Q psy10231 261 LSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAEL 340 (607)
Q Consensus 261 ~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (607)
+..+.++|.+.. +.++.
T Consensus 189 ----------------------------------------~~~~~~~e~~~~-----~~~~~------------------ 205 (437)
T TIGR00792 189 ----------------------------------------ICFFGTKERYSE-----IPKNI------------------ 205 (437)
T ss_pred ----------------------------------------HHHcCCEecCCC-----CCccc------------------
Confidence 233445553210 00000
Q ss_pred HHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHH
Q psy10231 341 KEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLDDYVASIIVAGLRF 419 (607)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 419 (607)
+++.+..+.+++++++|.++.... ...+.. .+.+....+.+.+.+. .+.+........+..+..+
T Consensus 206 ---------~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 271 (437)
T TIGR00792 206 ---------EKKLSLKQIFKALFKNDQLLILCL-AYLFYN----LAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGL 271 (437)
T ss_pred ---------ccCCCHHHHHHHHhCCHHHHHHHH-HHHHHH----HHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHH
Confidence 000001123345566665544222 221111 1223333333444332 1222223445555678888
Q ss_pred HHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 420 ~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
++.++.+++.||+|+|+.+..+..+.+++.+.+.+. . +..+.......+...+.+. ..+..+++.+|.
T Consensus 272 i~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 339 (437)
T TIGR00792 272 IGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA----------G-SNLPLILVLIILAGFGQNF-VTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----------c-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Confidence 999999999999999999888877776666554331 0 1112222222222222222 245566777777
Q ss_pred cC-------ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 500 FP-------LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 500 ~p-------~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
.+ ++.+|.+.|+.+.+..++..+++.+.|.+.+..|+
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 54 45679999999999999999999999999887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=200.65 Aligned_cols=369 Identities=15% Similarity=0.125 Sum_probs=250.5
Q ss_pred cCcchhHHHhhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHH
Q psy10231 24 SDDASWIGKLHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFI 103 (607)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~ 103 (607)
.-+.-|+..++ ..+...+....++.+.. +..-|+...+++.++..+...+.++++|.++||+.|||+++.+-++..
T Consensus 11 ~Fr~lw~a~~i-S~lG~~~~~va~~wlv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~ 86 (524)
T PF05977_consen 11 NFRRLWIAQLI-SNLGDWMQTVALAWLVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRA 86 (524)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 34445555543 33344444555565555 566688999999999999999999999999999999999999988877
Q ss_pred HHHHHHHhc-----cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----
Q psy10231 104 IGWTIITVS-----KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---- 173 (607)
Q Consensus 104 ~~~~~~a~a-----~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---- 173 (607)
+..++.++. .+.+.+++.-++.|++.+...| -.+++.|..|+++...+.++.+...++..++||.+++.+
T Consensus 87 ~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 87 LVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 665554432 4789999999999999999999 999999999999999999999999999999999999876
Q ss_pred hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhc
Q psy10231 174 TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEIC 253 (607)
Q Consensus 174 ~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~ 253 (607)
|-.+.|.+.++.-++....+..++
T Consensus 167 G~~~~f~inalsfl~~i~~l~~~~-------------------------------------------------------- 190 (524)
T PF05977_consen 167 GAAAAFLINALSFLISILALLRWK-------------------------------------------------------- 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--------------------------------------------------------
Confidence 666777776654443333111111
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCc
Q psy10231 254 LPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRST 333 (607)
Q Consensus 254 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~ 333 (607)
++.+ .+...+| ...
T Consensus 191 -----------------------------------------------------~~~~----~~~~~~e--~~~------- 204 (524)
T PF05977_consen 191 -----------------------------------------------------PPPP----PSSLPRE--RFF------- 204 (524)
T ss_pred -----------------------------------------------------cccc----ccccchh--hhh-------
Confidence 1100 0000000 000
Q ss_pred hhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHH
Q psy10231 334 AVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVAS 411 (607)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~ 411 (607)
+++ ...++...++|..+. .+....+..+. ...+...+|.+.++ .+.+.. -+...
T Consensus 205 -------~~l------------~~G~ryv~~~~~l~~-~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~ 260 (524)
T PF05977_consen 205 -------SAL------------REGLRYVRSSPPLRS-VLLRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLL 260 (524)
T ss_pred -------hhH------------HHHHHHHhcchHHHH-HHHHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHH
Confidence 000 011222233343332 22222222111 22333446776654 354433 35677
Q ss_pred HHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchh
Q psy10231 412 IIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQL 491 (607)
Q Consensus 412 ~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (607)
...+++.++|.++.+++.+|+++++++..+.+..+++.+.+++. .+.+......++.+... ......
T Consensus 261 a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------~~~~~~~~~l~l~G~~~-~~~~~~ 327 (524)
T PF05977_consen 261 AAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------PSFWLALIALFLAGAAW-IIANSS 327 (524)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHHHH-HHHHHH
Confidence 78899999999999999999999888888888777777776652 22233333333333332 233344
Q ss_pred hhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy10231 492 PWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 492 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
..+...+..|++.||++.++..++...+..++..+.|.+.+..|....+.+.++..+++.++..
T Consensus 328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999999999999999999999999999999988887766665555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=211.32 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=123.1
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc---
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK--- 113 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~--- 113 (607)
++..++....+|.+.+ +|++++.+.|++.+.+.++++++.++.++++||+|||+.+.++.++++++++++++.+
T Consensus 46 ~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 46 LLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhc
Confidence 3455677888888888 9999999999999999999999999999999999999999999999999999998763
Q ss_pred ------------------------------------------------chhHHHHHHHHHhhhhhhHhh-hHhHHhhccC
Q psy10231 114 ------------------------------------------------GFTLLCVGRFITGMAIGMSSA-CYVYVAEICL 144 (607)
Q Consensus 114 ------------------------------------------------~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~ 144 (607)
.+..++++|+++|+|.+..++ +.+++.|++|
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 256778999999999999999 9999999999
Q ss_pred CCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 145 PNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 145 ~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
+++|+++++++..+..+|..+|+++++.+
T Consensus 203 ~~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 203 SKNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999888764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-22 Score=190.30 Aligned_cols=341 Identities=11% Similarity=0.051 Sum_probs=236.2
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
+.+-+++++|++.+++.+.+.+.+++.|.+.||+|+|..+++|++.+..++++.++..+|++++++|.+||+|.+...+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 5667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhccCCCc-cccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhcccc
Q psy10231 135 CYVYVAEICLPND-RGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMA 209 (607)
Q Consensus 135 ~~~~i~e~~~~~~-r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~ 209 (607)
+.++++|.+|+++ |++++|+.-.+.++|.++||.+|+.+ |.+..|++.+++.++-..+.++
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~-------------- 245 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL-------------- 245 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh--------------
Confidence 9999999999765 79999999999999999999999988 9999999999998887663211
Q ss_pred ccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy10231 210 IGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTS 289 (607)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~ 289 (607)
T Consensus 246 -------------------------------------------------------------------------------- 245 (464)
T KOG3764|consen 246 -------------------------------------------------------------------------------- 245 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcch
Q psy10231 290 AACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVW 369 (607)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (607)
.++.+. .+. ++..+...+++++++|..+
T Consensus 246 ---------------vi~p~~------~~~-------------------------------~~~~~~~~~~~Ll~dP~I~ 273 (464)
T KOG3764|consen 246 ---------------VIEPTE------MDP-------------------------------DSTEQGTPMWSLLMDPYIL 273 (464)
T ss_pred ---------------eeCccc------cCc-------------------------------cccccCccHHHHHhCchHh
Confidence 111110 000 0111223455666666433
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHH--hhHHH
Q psy10231 370 KPFFILIGFFLFQEASGMYIVLYYAVNFF-EDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATT--SAFFM 445 (607)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~--~~~~~ 445 (607)
.. ...+.+. +. +....---++.+. ++...+. ..+.......+...+++.+.|.+.||++.-+++.. +.+..
T Consensus 274 ~~---agai~~~-n~-~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~ 348 (464)
T KOG3764|consen 274 LI---AGAITFS-NS-SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATV 348 (464)
T ss_pred hh---hcchhhc-cc-hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHH
Confidence 21 1111111 11 1111111122222 2223222 34556666778889999999999999995444333 22222
Q ss_pred HHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc---chhhHHHHHHHHHHHHHHH
Q psy10231 446 ALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS---VRGIMGGIVCSLGYLFIFT 522 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~i 522 (607)
..+.....+.. .-...++........+........|.. .+..|.-..+ ..|...++......++.++
T Consensus 349 G~~~~~iP~~~---------~~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~ 418 (464)
T KOG3764|consen 349 GVSSGPIPFAT---------SIAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI 418 (464)
T ss_pred HHHhchhHhhh---------hHHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhc
Confidence 22222222210 001122333333333333333344443 4444443344 6689999999999999999
Q ss_pred HhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 523 TVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 523 ~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+|.+.|.+.+..|+.+...+.+...++.+-+..++
T Consensus 419 GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 419 GPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred cccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888777665443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=192.46 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=122.2
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhcc-chhHHHHH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSK-GFTLLCVG 121 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~-~~~~l~~~ 121 (607)
..+...+.+ ++|.++.+.+++.+.+........+++|+++|| +|||++++.+.++..++.+++++++ +.+.+.++
T Consensus 42 ~~l~~yl~~---~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~ 118 (500)
T PRK09584 42 GIMAVYLVK---QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMG 118 (500)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 334445556 899999999999988877767777899999999 5999999999999999999999875 56677788
Q ss_pred HHHHhhhhhhHhh-hHhHHhhccCCCc--cccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 122 RFITGMAIGMSSA-CYVYVAEICLPND--RGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 122 R~l~G~g~g~~~~-~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
|+++|+|.|...+ ..+++.|++|+++ |..+.++++.+.++|..+||.+++++ |||+.|++.++..++..+
T Consensus 119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 8999999998654 45688888999999999999999888 899999998765554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=183.87 Aligned_cols=359 Identities=9% Similarity=-0.074 Sum_probs=222.3
Q ss_pred hhccccccccccccccccCCCcccccCccchhHH--HHHHHHHhhHhhhHHHH-hhhhhcCchhhhhhhhHH-HHHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWI--ASLGVISTPVGSLFAGI-FMDLLGRKTTVQLTAIPF-IIGWTII 109 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i--~s~~~l~~~i~~~~~g~-l~Dr~Grr~~l~~~~~l~-~~~~~~~ 109 (607)
+.-|+..++..+.+|...+ |.|.|.+++|++ .+...+...+.++++++ ..||+||||..++.+.+. .......
T Consensus 11 ~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~ 87 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL 87 (390)
T ss_pred HHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence 4445555666777788877 889999999997 46667888788888854 799999999976655332 2222222
Q ss_pred H-h--ccc-hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHH
Q psy10231 110 T-V--SKG-FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSA 180 (607)
Q Consensus 110 a-~--a~~-~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~ 180 (607)
+ + ..+ ..+++..-++.++..+...+ .-++..|..++++++...+....+..+|.++|+.....+ +||..|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~ 167 (390)
T TIGR02718 88 ALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFL 167 (390)
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 2 1 222 33445555666677777777 778888888888888888888888888999888655544 9999999
Q ss_pred HhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccc
Q psy10231 181 ACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGY 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~ 260 (607)
+.++..++..+..+
T Consensus 168 ~~a~l~~~~~~~~~------------------------------------------------------------------ 181 (390)
T TIGR02718 168 LVACVPLASLVCVL------------------------------------------------------------------ 181 (390)
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 98888776555221
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHH
Q psy10231 261 LSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAEL 340 (607)
Q Consensus 261 ~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (607)
+..||.++ +++.++
T Consensus 182 -------------------------------------------~~~~~~~~----~~~~~~------------------- 195 (390)
T TIGR02718 182 -------------------------------------------WLKDRAVA----SPEAPL------------------- 195 (390)
T ss_pred -------------------------------------------HcCCCCcC----ccccch-------------------
Confidence 11222110 000000
Q ss_pred HHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHH-HHH
Q psy10231 341 KEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVA-GLR 418 (607)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~-~~~ 418 (607)
....+.++.+|+|..+......+. .. ........+.+.++++.|.+.+ .+......+ ...
T Consensus 196 -------------~~~~~~~~~l~~~~~~~~~~~~~l-~~----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~ 257 (390)
T TIGR02718 196 -------------ARRASLFRFFRRPLAWSLLALALL-SA----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTV 257 (390)
T ss_pred -------------hhHHHHHHHHcCcCHHHHHHHHHH-HH----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence 000123456777765443332222 21 1234445566777777777654 344444444 355
Q ss_pred HHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHH-HHHHHhccchhhhhhhc
Q psy10231 419 FFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILAN-VCASMLGMLQLPWVMIA 497 (607)
Q Consensus 419 ~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 497 (607)
+++.++.+++.||+|+|+.+..+..+.++..+......... .............+ ....+.. .+..+....
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 329 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW-------LAPGIAVAWSCSAFGSLITGIT-SVAIYTAFM 329 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 67788999999999999988876655533322221110000 01111111111111 1112222 233334544
Q ss_pred cccCc-cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 498 ELFPL-SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 498 e~~p~-~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
+..++ +.+++.+++.+.+.+++..++|.+.|.+.+..|+...|...+.+.+++.++
T Consensus 330 ~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 330 RFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 55554 889999999999999999999999999999999887887777666665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=167.06 Aligned_cols=356 Identities=14% Similarity=0.163 Sum_probs=255.1
Q ss_pred HHHhhhcccccc----ccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHH
Q psy10231 30 IGKLHCNNLTHA----IPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIG 105 (607)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 105 (607)
+..+.+.+++.- ..+++++++.+ |+|+|.+..|++.+...+...+.+++..+++.|+|.++.+..++++..++
T Consensus 14 i~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555666543 34566666666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHH
Q psy10231 106 WTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTS 179 (607)
Q Consensus 106 ~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f 179 (607)
.++-... +.+.++.+-.+.|.|.+.... .+..+-+.+|+ +-+..++++....++|..+++.+.-.+ +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9998877 888999999999999999999 99999999974 558899999988888888877666555 799999
Q ss_pred HHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcc
Q psy10231 180 AACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRG 259 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~ 259 (607)
.+-+.++++.++.
T Consensus 169 ~~WAl~allAl~~------------------------------------------------------------------- 181 (395)
T COG2807 169 GFWALLALLALLI------------------------------------------------------------------- 181 (395)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 9988888877662
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhH
Q psy10231 260 YLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAE 339 (607)
Q Consensus 260 ~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (607)
++|...|. + .
T Consensus 182 ---------------------------------------------WlPq~~r~-----~-~------------------- 191 (395)
T COG2807 182 ---------------------------------------------WLPQALRE-----Q-A------------------- 191 (395)
T ss_pred ---------------------------------------------Hhhhcccc-----c-c-------------------
Confidence 11211000 0 0
Q ss_pred HHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHH
Q psy10231 340 LKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLR 418 (607)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 418 (607)
+..+....+-.+++|+|.-|. ..+++-.+...+|....|+|.++.+.|.+.. ++....+..+..
T Consensus 192 ----------~~~~~~~~~~~~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~ 256 (395)
T COG2807 192 ----------ASIATKLVSVRKVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQ 256 (395)
T ss_pred ----------cccccccccccccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHH
Confidence 001111222334677776554 2233444555689999999999999999664 677888888999
Q ss_pred HHHHHHHhHhhccc-CCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhc
Q psy10231 419 FFMAIIGSACIQMF-SRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIA 497 (607)
Q Consensus 419 ~~~~~~~g~l~d~~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (607)
++.++....+.+|. ++|+........+.++.+.+.+ .+. ...+.-.++.+.+. .+.+++....+.
T Consensus 257 ~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~---~P~----------~~~~lw~~llG~G~-G~~F~laL~li~ 322 (395)
T COG2807 257 LPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL---APG----------QLPILWALLLGLGQ-GGAFPLALTLIL 322 (395)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH---hhh----------hHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 99999999999875 4566666666666666665543 111 11111122222222 223444444444
Q ss_pred cc-cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhh
Q psy10231 498 EL-FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQA 556 (607)
Q Consensus 498 e~-~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 556 (607)
.- -.++..+.-.|+.+.++++-...+|.++|.+.|..| |...+..+....++..+..+.
T Consensus 323 ~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 323 LRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 33 344566778889999999999999999999999876 555666666666655555443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-19 Score=182.44 Aligned_cols=378 Identities=12% Similarity=0.083 Sum_probs=235.5
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh----hhcCchhhhhh-hhHHHHHHHHHHhccchh--
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD----LLGRKTTVQLT-AIPFIIGWTIITVSKGFT-- 116 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D----r~Grr~~l~~~-~~l~~~~~~~~a~a~~~~-- 116 (607)
.+.++.+.+ ++|.+..+.+++..+..+...+.+++.|+++| |+|||+.++++ .+...++.++.++++++.
T Consensus 24 ~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 24 LSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 344444445 78999999999999999999999999999999 59999998874 666667777777877653
Q ss_pred ---------------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCcc--ccccchhhHHHHHHHHHHHHHhhhh-----
Q psy10231 117 ---------------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDR--GYLSAFGPVFVSLGVLIVYSLGYIV----- 173 (607)
Q Consensus 117 ---------------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~ig~~l~~~l----- 173 (607)
.++++-.+..++.+...+ ..+++.|.+|+++| +.+.++.+.+.++|.++|+.+++..
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~ 180 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 223333344558888888 99999999998865 6899999999999999999988764
Q ss_pred --------------hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhc
Q psy10231 174 --------------TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAI 239 (607)
Q Consensus 174 --------------~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (607)
+.|+.|++.++..++..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l------------------------------------------------ 212 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTY------------------------------------------------ 212 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 234445444444333333
Q ss_pred chhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCCh
Q psy10231 240 GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCT 319 (607)
Q Consensus 240 g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~ 319 (607)
+..+.++|.|.. ..++.
T Consensus 213 -------------------------------------------------------------~t~~~v~E~~~~--~~~~~ 229 (477)
T TIGR01301 213 -------------------------------------------------------------IALSAVKENPLI--GSDDF 229 (477)
T ss_pred -------------------------------------------------------------HHeeeeeccCCC--ccccc
Confidence 234445554310 00000
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhc----cCcchHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy10231 320 KEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFT----NSAVWKPFFILIGFFLFQEASGMYIVLYYAV 395 (607)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (607)
++ + +.++.+ +.+....++++++ -|+..+++. +..++.+.+...+..|..
T Consensus 230 ~~--~---~~~~~~------------------~~~~~~~~~~i~~~~~~mP~~m~~l~----~vqffsW~a~f~~~~y~T 282 (477)
T TIGR01301 230 IN--S---EAAPPS------------------KHGEEAFFGELFGAFKYLPRPVWILL----LVTCLNWIAWFPFILFDT 282 (477)
T ss_pred hh--h---hccccc------------------ccchhhhHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 00 0 000000 0000011122222 233233232 333344445677777777
Q ss_pred HHHHHh--CCCc--c---------hHHHHHHHHHHHHHHHHHHhHhhcccCC-chhHHHhhHHHHHHHHHHhhhhhhhcc
Q psy10231 396 NFFEDA--GSSL--D---------DYVASIIVAGLRFFMAIIGSACIQMFSR-RALATTSAFFMALSMGISGTYEYYFSE 461 (607)
Q Consensus 396 ~~~~~~--g~~~--~---------~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (607)
.+..+. +.+. + ..+.....++...+.+++..++.+|+|+ |+....+.++.+++++...+......+
T Consensus 283 ~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~ 362 (477)
T TIGR01301 283 DWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKN 362 (477)
T ss_pred HHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 776532 2111 1 1234455556666777788889999985 666678877777777666543221110
Q ss_pred c-c-------CCCCCC-ChHHHHHHHHHHHHHHhccchhhhhhhccccCc--cchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 462 L-S-------MDDRPL-NWIPLACILANVCASMLGMLQLPWVMIAELFPL--SVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 462 ~-~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
. . ...... .+..+......+... .....++++++++..|+ +..|..+|+.|.+..+...+.....|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~ 441 (477)
T TIGR01301 363 SRYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPW 441 (477)
T ss_pred cccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000000 133333333333333 34467788999999985 4459999999999999999999888886
Q ss_pred HHhhh--hHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 531 MYLLN--MGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 531 ~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.+..| ....+.+-++.+++++++.++.+|+++.
T Consensus 442 ~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 442 DQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 66655 3336667777788888888888898764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-16 Score=164.72 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=114.6
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhhhhhHHHHHHHHHHhcc-chhHHHHHHHHHhhhhhhHh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQLTAIPFIIGWTIITVSK-GFTLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~a~a~-~~~~l~~~R~l~G~g~g~~~ 133 (607)
++|.++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++..++.++.+... +...+.++..+.++|.|...
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~ 118 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFK 118 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999 999999999999999988777643 23334555555667777777
Q ss_pred h-hHhHHhhccCCC--ccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 134 A-CYVYVAEICLPN--DRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 134 ~-~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
+ ..+++.|.+|++ +|....++...+.++|..++|.+.+++ |||+.|.+.++..++..+
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 8 889999999976 799999999999999999999999888 899999987664444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=164.33 Aligned_cols=361 Identities=13% Similarity=0.068 Sum_probs=231.4
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhc-CchhhhhhhhHHHHHHHHHHhccchhH
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLG-RKTTVQLTAIPFIIGWTIITVSKGFTL 117 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~G-rr~~l~~~~~l~~~~~~~~a~a~~~~~ 117 (607)
..+...+.+|..-+ +.+.|..|+|.+.+...+...++++++|.++||.+ +|+.+.+..++.++........++++.
T Consensus 17 ~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~ 93 (400)
T PF03825_consen 17 AYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWW 93 (400)
T ss_pred HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34444444555445 78899999999999999999999999999999986 577887888888887777788899999
Q ss_pred HHHHHHHHhhhhhhHhh-hHhHHhhccCC--CccccccchhhHHHHHHHHH-HHHHhhhhhH---HHHHHHhHHHHHHHH
Q psy10231 118 LCVGRFITGMAIGMSSA-CYVYVAEICLP--NDRGYLSAFGPVFVSLGVLI-VYSLGYIVTW---QYTSAACAVVALVGF 190 (607)
Q Consensus 118 l~~~R~l~G~g~g~~~~-~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~i-g~~l~~~l~W---r~~f~~~~~~~~~~~ 190 (607)
+++.-++..+......| .-++..+...+ ++-|+.-.+-..++.++... +..+.+..++ ...+++.+..+++..
T Consensus 94 ~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 94 LFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 99988888888888888 88888887753 22255554445555544332 1222332222 234444444443333
Q ss_pred HHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHH
Q psy10231 191 AAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVS 270 (607)
Q Consensus 191 ~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~ 270 (607)
..
T Consensus 174 ~~------------------------------------------------------------------------------ 175 (400)
T PF03825_consen 174 GF------------------------------------------------------------------------------ 175 (400)
T ss_pred HH------------------------------------------------------------------------------
Confidence 32
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHh
Q psy10231 271 LGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350 (607)
Q Consensus 271 ~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (607)
.+.+|+.|. ++.. ++..
T Consensus 176 --------------------------------~l~lp~~~~---~~~~-~~~~--------------------------- 192 (400)
T PF03825_consen 176 --------------------------------ALFLPKTPP---KRSA-KESV--------------------------- 192 (400)
T ss_pred --------------------------------HHhCCCCcc---cccc-CCCc---------------------------
Confidence 223344331 0000 0000
Q ss_pred hcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhC-CCcc-hHHHHHHHHHHHHHHHHHHhHh
Q psy10231 351 MAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAG-SSLD-DYVASIIVAGLRFFMAIIGSAC 428 (607)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~~~~~~~~~g~l 428 (607)
++....+..+++|+|+...-++..+.. .........|.+.++++.| .+.+ ......+..+..++.-...+++
T Consensus 193 -~~~~~~~~~~llk~~~~~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~ 266 (400)
T PF03825_consen 193 -KKLLGLDALKLLKNPRFLVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRF 266 (400)
T ss_pred -ccccchHHHHHhcCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112334678887655422222222 2234566777888888877 4333 4545556667888999999999
Q ss_pred hcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHH----HHHHHHHHhccchhhhhhhccccCccc
Q psy10231 429 IQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACI----LANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 429 ~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
..|+|.|+++..+....++=..+++... ++.+...... .+.+..++... .....++.+..|++.
T Consensus 267 ~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----------~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~ 334 (400)
T PF03825_consen 267 LKRFGIKWLLLLALVAYAVRWLLYAYFS-----------DPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPEL 334 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccc
Confidence 9999999999999998888887776520 1222222211 12333333332 334488999999999
Q ss_pred hhhHHHHHHHHH-HHHHHHHhhhcHHHHHhhhhHH------HHHHHHHHHHHHHHHhhhcccCC
Q psy10231 505 RGIMGGIVCSLG-YLFIFTTVKMYPDLMYLLNMGG------MMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 505 r~~~~g~~~~~~-~~~~~i~~~i~~~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
|++++++.+... .+|..++..+.|.+.|..|... .+.+.+++.++..++.+++.+|+
T Consensus 335 ~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 335 RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999988764 5899999999999999876543 44455555555555555555544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=177.45 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=87.6
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhh----hhcC-chhhhhhhhHHHHHHHHHHhccc------hhHHHHHHHH
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMD----LLGR-KTTVQLTAIPFIIGWTIITVSKG------FTLLCVGRFI 124 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D----r~Gr-r~~l~~~~~l~~~~~~~~a~a~~------~~~l~~~R~l 124 (607)
.++++..++|.+..+.-+.-++..++.|.++| |+|| |+.++.+.+..+++.+++-..++ +..+++.-++
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l 115 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYIL 115 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 67999999999999999999999999999999 6799 45556677777777655544332 3455666777
Q ss_pred HhhhhhhHhh-hHhHHhhcc-CCCccccccchhhHHHHHHHHHHH
Q psy10231 125 TGMAIGMSSA-CYVYVAEIC-LPNDRGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 125 ~G~g~g~~~~-~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~ig~ 167 (607)
.+++.....+ -.++..|+. ++++|.+..+.-..+.++|..+.+
T Consensus 116 ~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~ 160 (473)
T PRK10429 116 WGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTA 160 (473)
T ss_pred HHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888 888999998 588999988886666666655543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=173.36 Aligned_cols=364 Identities=12% Similarity=0.036 Sum_probs=222.1
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhc-----CchhhhhhhhHHH-HHH
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLG-----RKTTVQLTAIPFI-IGW 106 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~G-----rr~~l~~~~~l~~-~~~ 106 (607)
.+.-|+.......+.|.+++ ++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.. ++.
T Consensus 35 y~~qGl~~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 35 LFVKGIAGLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHhhHHHHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 34556652234566677777 8999999999999999999999666 999999998 7777777777663 433
Q ss_pred HHHHhccchhHHH-HHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHH---HHHHHHHHHHHhhhh----hHHH
Q psy10231 107 TIITVSKGFTLLC-VGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVF---VSLGVLIVYSLGYIV----TWQY 177 (607)
Q Consensus 107 ~~~a~a~~~~~l~-~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~---~~lG~~ig~~l~~~l----~Wr~ 177 (607)
...+..++..... +.+++.+++.+...+ +-++..|..+ +++....+..... .++|.++++.+++.+ +||.
T Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 111 GLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3334445544444 489999999999999 9999999998 5554444344333 347888887777766 8999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCC
Q psy10231 178 TSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPND 257 (607)
Q Consensus 178 ~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~ 257 (607)
.|++.+++.++..+..+++||.+....++.+
T Consensus 190 ~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~------------------------------------------------- 220 (468)
T TIGR00788 190 LFLITAALLLLQLFVSNLSKERRAFVRPRIG------------------------------------------------- 220 (468)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccc-------------------------------------------------
Confidence 9999888877765544555554210000000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhh
Q psy10231 258 RGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVAD 337 (607)
Q Consensus 258 r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (607)
.++.... . ....
T Consensus 221 -------------------------------------------------------------~~~~~~~-~------~~~~ 232 (468)
T TIGR00788 221 -------------------------------------------------------------TYLEMNM-A------LLTL 232 (468)
T ss_pred -------------------------------------------------------------ccchhhh-h------hhhh
Confidence 0000000 0 0000
Q ss_pred hHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHH
Q psy10231 338 AELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAG 416 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 416 (607)
...+.. .+...+.++.+++|..++.+...++........ .....++.+ ...|.+.. .+......++
T Consensus 233 ~~~~~~---------~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~-~~~~f~~~~---~~lG~s~~~~G~~~~~~~v 299 (468)
T TIGR00788 233 GVLANV---------KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGSVFCATT---QCLPGGPSFSGMSKVVGNL 299 (468)
T ss_pred hHHHHH---------HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC-CceeEEEEc---ccCCCCcchhhhHHHHHHH
Confidence 000000 000112334455665554333222211111110 000001111 23455443 5666777788
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCC-CCChHHHHHHHHHHHHHHhccchhhhhh
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDR-PLNWIPLACILANVCASMLGMLQLPWVM 495 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (607)
+.+++..+.+++.+|++.|+.+..+.++.+++............ .... ...+.......+.....+....+. ..+
T Consensus 300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~---~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~ 375 (468)
T TIGR00788 300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN---LAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVL 375 (468)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc---cccCCCCeeeeeehhHHHHHHHHHHHccH-HHH
Confidence 89999999999999999999988888877776644322111110 0000 112223333334444444555454 588
Q ss_pred hccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh
Q psy10231 496 IAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN 535 (607)
Q Consensus 496 ~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g 535 (607)
+.+..|++.+|+..++.+.+.++|..+++.+.+.+.+..|
T Consensus 376 ~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 376 LARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999988877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=172.71 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=93.8
Q ss_pred cccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh----hcCch-hhhhhhhHHHHHHHHHHhccc-----
Q psy10231 45 ILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL----LGRKT-TVQLTAIPFIIGWTIITVSKG----- 114 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr----~Grr~-~l~~~~~l~~~~~~~~a~a~~----- 114 (607)
.+.+.+.+ ++|++..+.|.+.++..+..++..++.|.++|| +|||| .++.+.+..+++.++....++
T Consensus 31 ~l~~~~t~---~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 31 FLAYFYTD---VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 34455566 899999999999999999999999999999998 88855 455677777777766555543
Q ss_pred -hhHHHHHHHHHhhhhhhHhh-hHhHHhhcc-CCCccccccchhhHHHHHHHHHHHHH
Q psy10231 115 -FTLLCVGRFITGMAIGMSSA-CYVYVAEIC-LPNDRGYLSAFGPVFVSLGVLIVYSL 169 (607)
Q Consensus 115 -~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~ig~~l 169 (607)
+..+++..++.+.+...... -.++..|+. ++++|++..+....+..+|..+++.+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~ 165 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVI 165 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777666666 778999998 46789988888877777777766543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=156.12 Aligned_cols=189 Identities=12% Similarity=0.024 Sum_probs=126.3
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc----c-hHHHHHHHHHHHHHHHHHHhHhhccc
Q psy10231 358 HCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL----D-DYVASIIVAGLRFFMAIIGSACIQMF 432 (607)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~~~~~~~~~~~~~~~~g~l~d~~ 432 (607)
+..+++|+|++|.-.+........ +..+-...+.|+...-.+. . -+.....-.+..++...+..++.+|+
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri 286 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI 286 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888776533333322222 3444444555555432221 1 23345555667788888999999999
Q ss_pred CCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHH
Q psy10231 433 SRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIV 512 (607)
Q Consensus 433 grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 512 (607)
|.|+.++++..++.+-.+..++. +..+.+...=.+-..-+.... ....-|+.+.+|++..++...+.
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~------------~~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFA------------TNPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT--------------SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHH
T ss_pred ChHhHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHH
Confidence 99999999999999988888762 223333333333333333322 23448999999999999988885
Q ss_pred -HHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy10231 513 -CSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 513 -~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (607)
+...+++..+.+.+.|.+.|+.|++..+++.+.+.++..++..+.+++.+++
T Consensus 354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 5777899999999999999999999999999999888888888877665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=163.52 Aligned_cols=331 Identities=11% Similarity=0.025 Sum_probs=187.0
Q ss_pred ccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh----cCchhh-hhhhhHHHHHHHHHH-h----ccc-
Q psy10231 46 LIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL----GRKTTV-QLTAIPFIIGWTIIT-V----SKG- 114 (607)
Q Consensus 46 ~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~----Grr~~l-~~~~~l~~~~~~~~a-~----a~~- 114 (607)
+.+.+.+ .+|++..++|.+.+...+..++..++.|+++||. ||||.. +.+.+...+.+++.- . +++
T Consensus 31 l~~y~~~---~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (448)
T PRK09848 31 LLSYYTD---VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS 107 (448)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence 3345555 7899999999999999999999999999999986 777755 555555554444432 1 111
Q ss_pred -hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCC-CccccccchhhHHHH-----HHHHHHHHHhhhhh-H-HHHHHHhHH
Q psy10231 115 -FTLLCVGRFITGMAIGMSSA-CYVYVAEICLP-NDRGYLSAFGPVFVS-----LGVLIVYSLGYIVT-W-QYTSAACAV 184 (607)
Q Consensus 115 -~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~-~~r~~~~~~~~~~~~-----lG~~ig~~l~~~l~-W-r~~f~~~~~ 184 (607)
...+++.-++.+++.+...+ ..++..|+... ++|.+..+.-..+.+ +|..++|.++...+ . ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~------- 180 (448)
T PRK09848 108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVS------- 180 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh-------
Confidence 23344556777888888887 77777777764 678776655544333 33334444333210 0 00
Q ss_pred HHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccch
Q psy10231 185 VALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 264 (607)
Q Consensus 185 ~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~ 264 (607)
T Consensus 181 -------------------------------------------------------------------------------- 180 (448)
T PRK09848 181 -------------------------------------------------------------------------------- 180 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 265 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
....|+... ..+..+..++.....||++. + +.+
T Consensus 181 ----------------~~~~~~~~~--~v~~~~~~~~~~~~~~e~~~----~-~~~------------------------ 213 (448)
T PRK09848 181 ----------------VYHFWTIVL--AIAGMVLYFICFKSTRENVV----R-IVA------------------------ 213 (448)
T ss_pred ----------------hHHHHHHHH--HHHHHHHHHHHHcCcEeccC----C-Ccc------------------------
Confidence 001111100 00001111122334455321 0 000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcchHHH-HHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLDDYVA-SIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~ 422 (607)
+....+.++++++++.++...+..++. ..+......+.+.++++ .|.+...... .....+..+++.
T Consensus 214 -------~~~~~~~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (448)
T PRK09848 214 -------QPSLKISLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA 281 (448)
T ss_pred -------CCCHHHHHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH
Confidence 000112345567777654422222222 22233444455555543 2433222222 222345567788
Q ss_pred HHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc
Q psy10231 423 IIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL 502 (607)
Q Consensus 423 ~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 502 (607)
++.+++.||+|+|+.+..+..+..++.+.+.+. .....+.......+...+.+. ..+..+++..|..|.
T Consensus 282 ~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~----------~~~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~ 350 (448)
T PRK09848 282 PLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV----------SVWSLPVALVALAIASIGQGV-TMTVMWALEADTVEY 350 (448)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Confidence 999999999999999998887777766555431 111222222223333333322 345556777777764
Q ss_pred c-------chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 503 S-------VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 503 ~-------~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
+ .+|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 351 ~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 351 GEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 459999999999999999999999988876554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-16 Score=163.82 Aligned_cols=332 Identities=16% Similarity=0.178 Sum_probs=222.8
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh----hhcCchhhh-hhhhHHHHHHHHHHhc-c----
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD----LLGRKTTVQ-LTAIPFIIGWTIITVS-K---- 113 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D----r~Grr~~l~-~~~~l~~~~~~~~a~a-~---- 113 (607)
..+.+...+ .+++++...|.+.....+-.++..++.|.++| |+||||..+ ++.++.+++.+++... +
T Consensus 22 ~~~~~f~~~---~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 22 SYLLYFYTD---VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence 344555666 77999999999999999999999999999999 899876655 5778888877777766 4
Q ss_pred ---chhHHHHHHHHHhhhhhhHhh-hHhHHhhccC-CCccccccchhhHHHHHHHHHHHHHhhhh-----------hHHH
Q psy10231 114 ---GFTLLCVGRFITGMAIGMSSA-CYVYVAEICL-PNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----------TWQY 177 (607)
Q Consensus 114 ---~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----------~Wr~ 177 (607)
....+.+.-++..++...... -.++..|+.+ +++|.+..+.-..+..+|.++...+...+ +|++
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~ 178 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW 178 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence 234457777777888888888 8999999998 57899999998888888886554444332 3666
Q ss_pred HHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCC
Q psy10231 178 TSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPND 257 (607)
Q Consensus 178 ~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~ 257 (607)
..++.+++.++..+
T Consensus 179 ~~~v~~iv~~v~~~------------------------------------------------------------------ 192 (428)
T PF13347_consen 179 MALVLAIVGLVFFL------------------------------------------------------------------ 192 (428)
T ss_pred HHHHHHHHHHHHhh------------------------------------------------------------------
Confidence 66665555554443
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhh
Q psy10231 258 RGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVAD 337 (607)
Q Consensus 258 r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (607)
+..+..+|.++ +.++
T Consensus 193 -------------------------------------------i~~~~~ke~~~------~~~~---------------- 207 (428)
T PF13347_consen 193 -------------------------------------------ITFFFVKERSV------EVTE---------------- 207 (428)
T ss_pred -------------------------------------------hhhheeeeccc------cccc----------------
Confidence 23444555100 0000
Q ss_pred hHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcchHHHHHHHHH
Q psy10231 338 AELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLDDYVASIIVAG 416 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 416 (607)
++++.+-.+.+++.+++|++++ ++....+..+. ......+.+.+.+. .+.+...........+
T Consensus 208 -----------~~~~~~~~~~~~~~~~nr~~~~-l~~~~~~~~~~----~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~ 271 (428)
T PF13347_consen 208 -----------QEKKISLRDSLRSLFRNRPFRI-LLLAFFLQWLA----FALMNTFLPYYFTYVLGNEGLISIFMLIFFV 271 (428)
T ss_pred -----------cccccccccchhhhcccchHHH-HHHHHHHHHhh----hhhhhhHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 0011223345667777776554 33333232222 23333334444443 2433334555667778
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhh
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMI 496 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (607)
..+++.++.++++||+|+|+.+..+..+.+++.+.+.+... .+.+..+....+.+.+. .......+++.
T Consensus 272 ~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~gi~~-~~~~~~~~a~~ 340 (428)
T PF13347_consen 272 ASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP----------GSPWLVLILFILAGIGY-GAFFVIPWAML 340 (428)
T ss_pred HHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhHhhh-ccccccccccc
Confidence 88999999999999999999999998888887776655210 22333333333333333 33446677888
Q ss_pred ccccCc-------cchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 497 AELFPL-------SVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 497 ~e~~p~-------~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
+|..+. +..|...|+.+....++..+++.+.+.+.+..|+
T Consensus 341 ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 341 ADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred ccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888763 3458899999999999999999999988876654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-14 Score=144.00 Aligned_cols=421 Identities=14% Similarity=0.083 Sum_probs=247.0
Q ss_pred ccccccccccccCC-CcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhhhhhHHHHHHHHHHhcc--ch
Q psy10231 40 HAIPSILIPQLQKP-SSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQLTAIPFIIGWTIITVSK--GF 115 (607)
Q Consensus 40 ~~~~~~~~p~l~~~-~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~a~a~--~~ 115 (607)
+|+-+++.-.+... .+.++.|+++..-+.++|..-.=+..+++|+++||+ |+|+++..|.+++.+|-++.+.+. +.
T Consensus 38 YGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~ 117 (498)
T COG3104 38 YGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP 117 (498)
T ss_pred hhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 34444444444441 113669999988888888877778899999999996 999999999999999999999984 79
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCC--ccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLPN--DRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
..+.++-++.++|.|..=+ ...++.|.+|++ +|-..++++.++.++|++++|.+.+++ +|+..|.+.++-..+
T Consensus 118 ~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~ 197 (498)
T COG3104 118 GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMII 197 (498)
T ss_pred cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999964 467888999999999999999999988 999999988877666
Q ss_pred HHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHH
Q psy10231 189 GFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVF 268 (607)
Q Consensus 189 ~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~ 268 (607)
.++.....+..-.... ++++ ++.+.+..-.....
T Consensus 198 gl~~f~~~~r~~~~~~--~~~~--------------------------------------------~~~~~~~~~~~~~~ 231 (498)
T COG3104 198 GLVIFLLGRRHVKGIG--GVPD--------------------------------------------PNPLSFNFLLPVLG 231 (498)
T ss_pred HHHHHHHccchhcCCC--CCCC--------------------------------------------ccchhhhhhhhhHH
Confidence 6554322221100000 0000 00000000000111
Q ss_pred HHHHHHHHHHHHHHH---hhHHHHhhhHHHHHHHHhhhcc-ccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHH
Q psy10231 269 VSLGVLIVYSLGYIV---TWQYTSAACAVVALVGFAAMHA-VPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344 (607)
Q Consensus 269 ~~~g~~~~~~~~~~~---~Wr~~~~~~~i~~~~~~~~~~~-~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 344 (607)
..+...+...+.... .|+....+..+...+..+...+ .++. .+|.++.+.
T Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~er~r~~~----------------- 285 (498)
T COG3104 232 GLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV---------FDERRRLLA----------------- 285 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---------HHHHHHHHH-----------------
Confidence 111111111111122 2333333222222222221111 1110 011110000
Q ss_pred HHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHHHH
Q psy10231 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED--AGSSLDDYVASIIVAGLRFFMA 422 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 422 (607)
..++++...+.+....-....+..|.....+. .|++..+.+.-.+..+.-++.+
T Consensus 286 ------------------------~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~ 341 (498)
T COG3104 286 ------------------------AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFS 341 (498)
T ss_pred ------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHH
Confidence 11122222222222222234455555554432 2344455566666666666667
Q ss_pred HHHhHhhcccCCc-------hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhh
Q psy10231 423 IIGSACIQMFSRR-------ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVM 495 (607)
Q Consensus 423 ~~~g~l~d~~grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (607)
++..++..|.+++ .-+-.+..++..+.+++........ .++...+....+...++....-....|+...+
T Consensus 342 pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~ 418 (498)
T COG3104 342 PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG---GPSGLVSVWWLVLSYVLQSFGELFISPVGLSM 418 (498)
T ss_pred HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6666666663332 1233444555555554444211111 11223344445555566666677778888899
Q ss_pred hccccCccchhhHHHHHHHHHHHHHHHHhhhcHH------HHHhhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 496 IAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPD------LMYLLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 496 ~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
+..+.|+...+..++........+..++..+.+. ..+.......|+.++...++..+......|
T Consensus 419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999998877777777777666652 334444555777777777776666554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-14 Score=147.78 Aligned_cols=366 Identities=13% Similarity=0.123 Sum_probs=216.2
Q ss_pred chhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhh-hhhHHHHHHHHHHhc--cchhHHHHHHHHHhhhhhhHhh-hHhH
Q psy10231 63 DASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL-TAIPFIIGWTIITVS--KGFTLLCVGRFITGMAIGMSSA-CYVY 138 (607)
Q Consensus 63 ~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~-~~~l~~~~~~~~a~a--~~~~~l~~~R~l~G~g~g~~~~-~~~~ 138 (607)
-.++..++..+..++..++.|.++|+-|+||.++. ..++..+++.+..+. .+++...+.-++.-++.+.... -.++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999987766554 555555667776664 3355555556666677788888 8999
Q ss_pred HhhccCCCcc--------------------------ccccchhhHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHH
Q psy10231 139 VAEICLPNDR--------------------------GYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 139 i~e~~~~~~r--------------------------~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f~~~~~~~~~~~~~ 192 (607)
+.|..+++++ ++..+.-.....+|.++.-.+.-.+
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~------------------- 211 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLL------------------- 211 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 9999999888 7777776666666665543322211
Q ss_pred HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHH
Q psy10231 193 MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLG 272 (607)
Q Consensus 193 ~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g 272 (607)
+..++.. .+.
T Consensus 212 -~~~~~~~------~~~--------------------------------------------------------------- 221 (477)
T PF11700_consen 212 -VISPGST------ASN--------------------------------------------------------------- 221 (477)
T ss_pred -HHcCCCc------ccc---------------------------------------------------------------
Confidence 1111111 000
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHH-HHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhh
Q psy10231 273 VLIVYSLGYIVTWQYTSAACAVV-ALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQM 351 (607)
Q Consensus 273 ~~~~~~~~~~~~Wr~~~~~~~i~-~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (607)
...-|..+.++++- .+..+...+++||.|+....+....-.+...+ +..+
T Consensus 222 ---------~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~--------------~l~~------ 272 (477)
T PF11700_consen 222 ---------TWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFK--------------RLWR------ 272 (477)
T ss_pred ---------chhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHH--------------HHHH------
Confidence 00012222222221 22333455666665431000000000111111 1111
Q ss_pred cCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcch-HHHHHHHHHHHHHHHHHHhHhh
Q psy10231 352 AGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLDD-YVASIIVAGLRFFMAIIGSACI 429 (607)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~ 429 (607)
.++++.+.| -+..+++..+....+.+.+......+.+ ..|++... ....+...+.+++|+++.+++.
T Consensus 273 ------t~k~~~~~~-----~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~ 341 (477)
T PF11700_consen 273 ------TFKEIRKLR-----QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQ 341 (477)
T ss_pred ------HHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222 1222334444445567777777777776 56886554 4567777889999999999999
Q ss_pred cccCCc--hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhh
Q psy10231 430 QMFSRR--ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGI 507 (607)
Q Consensus 430 d~~grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 507 (607)
||+|.| +.+..+.+...+..+ .+.+-..+.. ......+...+.... .+.+..+..+..-++.+|+.|+++.+.
T Consensus 342 ~r~g~k~~~~l~~~l~~~~~i~~-~g~~G~~~~~---~g~~~~~~f~~~a~~-~G~~~G~~qs~sRs~~~~LiP~g~e~e 416 (477)
T PF11700_consen 342 DRFGPKTKRTLLISLILWIIIPL-YGLFGFWPSF---FGLKSPWEFWVLAVL-IGLFMGGIQSASRSLFSRLIPPGREAE 416 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHH-HHHHHhhhcc---cCcccHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhCCCchhhH
Confidence 999998 676665554422221 1111001100 001233333333333 333333445667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 508 MGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 508 ~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
-+|+....+...+.++|.+++.+.+..| .+..+....++.+++.++. ..++..|+
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 9999999999999999999999999887 6667777777777766664 44444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=143.72 Aligned_cols=364 Identities=14% Similarity=0.074 Sum_probs=218.3
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHh---ccchhHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITV---SKGFTLL 118 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~---a~~~~~l 118 (607)
++.+.-+++. |.+++.++..++.+.|..--.+-++++|++.|| +|-|...++-+....++-++.+. ++.+|++
T Consensus 63 p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M 139 (459)
T KOG4686|consen 63 PGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTM 139 (459)
T ss_pred chhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445556666 888999999999999999999999999999995 78888777777777777777764 5889999
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHHHhcC
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAAMHAV 196 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~~~~~~~~~~~ 196 (607)
..+||+.|+|.-.... -..|..-|+..|+-+.++++.....-+|+.+--.+.+++ +.-.-++-....+.+.+.
T Consensus 140 ~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~----- 214 (459)
T KOG4686|consen 140 LAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLW----- 214 (459)
T ss_pred HhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHH-----
Confidence 9999999999888888 889999999999999999999888888876654444433 111111100001111000
Q ss_pred CCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHH
Q psy10231 197 PETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 276 (607)
Q Consensus 197 pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~ 276 (607)
T Consensus 215 -------------------------------------------------------------------------------- 214 (459)
T KOG4686|consen 215 -------------------------------------------------------------------------------- 214 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCcc
Q psy10231 277 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSM 356 (607)
Q Consensus 277 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (607)
-..-......+++-....-+. +++++..+.+- |....+.
T Consensus 215 ---------l~~~~~tc~~slical~lg~~------------D~rAerilh~e--------------------~g~~Ge~ 253 (459)
T KOG4686|consen 215 ---------LCFEVKTCKQSLICALSLGLS------------DDRAERILHLE--------------------EGFLGEE 253 (459)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHhhh--------------------cCcccCC
Confidence 000000000000000000000 01111111100 0001111
Q ss_pred chhhhhhc-cCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccC
Q psy10231 357 DHCAQTFT-NSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFS 433 (607)
Q Consensus 357 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g 433 (607)
....+... .|.+|....++. +.. .....+....|.++++ .|++.. ++.+.........+.+++.|.++||+|
T Consensus 254 pkLtdv~~f~ppfw~~~iicv-~yy----va~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G 328 (459)
T KOG4686|consen 254 PKLTDVNTFYPPFWVLVIICV-LYY----VAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG 328 (459)
T ss_pred cccccccccCccHHHHHHHHH-HHH----HHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc
Confidence 11111111 233343222222 222 1256667777888865 477554 455556666677888999999999999
Q ss_pred CchhHHHhhHHHHHHH-HHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHH
Q psy10231 434 RRALATTSAFFMALSM-GISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIV 512 (607)
Q Consensus 434 rr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 512 (607)
++-..+.+..+..+.. .++.+.+ .+.+. .+.+.+..+.. .....|..++-+.|+++-|++.|..
T Consensus 329 ~n~~wv~~a~~~tl~~H~~l~Ft~-----------lsPy~---~m~~lGLsysl-lAcslWP~va~~vpE~qLGTaygf~ 393 (459)
T KOG4686|consen 329 FNLWWVASACILTLLGHSGLFFTF-----------LSPYT---SMTFLGLSYSL-LACSLWPCVASLVPEEQLGTAYGFI 393 (459)
T ss_pred ceehhHHHHHHHHHHHhhhHHhhh-----------ccHHH---HHHHHhhhHHH-HHHHHhhhhhhhCCHHHhcchHHHH
Confidence 9988777665554433 2333211 11222 22222222221 1233456778888999999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHhhhh----HHHHHHHHHHHHHHHHHhh
Q psy10231 513 CSLGYLFIFTTVKMYPDLMYLLNM----GGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 513 ~~~~~~~~~i~~~i~~~l~~~~g~----~~~~~~~~~~~~~~~~~~~ 555 (607)
+.+.++|-.+.|++.|.+.|.-|. ...|.....+++.+..+.+
T Consensus 394 qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 394 QSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987652 2233444444444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=153.74 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhh----hcCchhhh-hhhhHHHHHHHHHHhccc------hhHHHHHHHH
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDL----LGRKTTVQ-LTAIPFIIGWTIITVSKG------FTLLCVGRFI 124 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr----~Grr~~l~-~~~~l~~~~~~~~a~a~~------~~~l~~~R~l 124 (607)
.++++...+|.+..+.-+--++.-|+.|.++|| +||||..+ ++.+..+++.+++-..++ +..+.+.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 789999999999999999999999999999995 79976555 576777777766654543 3456666777
Q ss_pred HhhhhhhHhh-hHhHHhhccC-CCccccccchhhHHHHHHHHHHHHHh
Q psy10231 125 TGMAIGMSSA-CYVYVAEICL-PNDRGYLSAFGPVFVSLGVLIVYSLG 170 (607)
Q Consensus 125 ~G~g~g~~~~-~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~ 170 (607)
..++...... -.++..|+.+ +++|++..++...+..+|..+++.+.
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888 8899999988 78899999999988888877765554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-14 Score=139.06 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=174.9
Q ss_pred HhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHH
Q psy10231 110 TVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVAL 187 (607)
Q Consensus 110 a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~~ 187 (607)
+...+|..++++-++.|.|.+...+ ...++++..+++++++.+++.+..+++|..++|.++..+ ...
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~----------- 73 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSG----------- 73 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-----------
Confidence 3557899999999999999999999 999999999999999999999999999999999988743 000
Q ss_pred HHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 188 VGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 188 ~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
..+. ..+++
T Consensus 74 --------~~~~---~~~~~------------------------------------------------------------ 82 (310)
T TIGR01272 74 --------AGDL---SMQVA------------------------------------------------------------ 82 (310)
T ss_pred --------Ccch---hhhhh------------------------------------------------------------
Confidence 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHH-HHHHH-hhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVV-ALVGF-AAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQ 345 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~-~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (607)
..-.....|+.++...... .++.+ +....+||... ++.++. + +
T Consensus 83 ---------~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~----------~----~------- 127 (310)
T TIGR01272 83 ---------TANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV----------S----S------- 127 (310)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc----------c----c-------
Confidence 0000112455555522222 22221 12233454310 000000 0 0
Q ss_pred HHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh---CCCcc-hHHHHHHHHHHHHHH
Q psy10231 346 SLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA---GSSLD-DYVASIIVAGLRFFM 421 (607)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~-~~~~~~~~~~~~~~~ 421 (607)
+++ ...++.+++|+.+. ..+..+...........|.+.|+.+. |.+.+ .......+..+.++|
T Consensus 128 ------~~~--~~~~~~~~~~~~~l-----~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iG 194 (310)
T TIGR01272 128 ------GDT--TQKTSAFQFTHLVL-----GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVG 194 (310)
T ss_pred ------ccc--cchhhHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 00112333332222 22333333444667788889998753 55433 456677778888999
Q ss_pred HHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccC
Q psy10231 422 AIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501 (607)
Q Consensus 422 ~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 501 (607)
+++++++.||+++|+.+..+..+.+++.++... ...........+. ..+.....|...+...+.+|
T Consensus 195 r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-------------~~~~~~~~~~~l~-g~~~s~i~P~~~s~a~~~~~ 260 (310)
T TIGR01272 195 RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-------------THGYVAMWFVLAL-GLFNSIMFPTIFSLALNALG 260 (310)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 999999999999998887776666655533322 1111222222222 33334456777777878777
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHH
Q psy10231 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542 (607)
Q Consensus 502 ~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~ 542 (607)
++ .+++.++. .++.+|+.+.|.+.|.+.|..|.+.++++
T Consensus 261 ~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 261 RH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred hh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 64 45666764 67889999999999999998887777663
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=142.86 Aligned_cols=384 Identities=15% Similarity=0.090 Sum_probs=240.3
Q ss_pred cchhHHHhh--hcccccccc----ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhh
Q psy10231 26 DASWIGKLH--CNNLTHAIP----SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTA 99 (607)
Q Consensus 26 ~~~~~~~~~--~~~~~~~~~----~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~ 99 (607)
.++|+..+. +..+..++. ++....... .++ +....-|+.-+|++.+....+++-|+.|++|-|..++++.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 356765443 334444332 333334444 455 7777889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcc------chh--HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHh
Q psy10231 100 IPFIIGWTIITVSK------GFT--LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLG 170 (607)
Q Consensus 100 ~l~~~~~~~~a~a~------~~~--~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~ 170 (607)
.+..+|..+-..+. .++ ....+..+.+.+.-.... ...+..-|+++++|..+..+-.++..+|.++|.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999999888763 344 666778888888777777 667777899999999999999998889988888777
Q ss_pred hhh----------hHHH--HHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhh
Q psy10231 171 YIV----------TWQY--TSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMA 238 (607)
Q Consensus 171 ~~l----------~Wr~--~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (607)
..+ .|-. .|+....++.+.+++
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l---------------------------------------------- 230 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLAL---------------------------------------------- 230 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 665 2333 122222222222111
Q ss_pred cchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCC
Q psy10231 239 IGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGC 318 (607)
Q Consensus 239 ~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~ 318 (607)
..+.....|.+|.-.
T Consensus 231 ------------------------------------------------------------~~~~~~~~P~tPps~----- 245 (480)
T KOG2563|consen 231 ------------------------------------------------------------VLFVFTKKPPTPPSA----- 245 (480)
T ss_pred ------------------------------------------------------------HHHhcCCCCCCCCch-----
Confidence 111112222222100
Q ss_pred hHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy10231 319 TKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFF 398 (607)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (607)
+... +++.+...+.++.++++++.. . .+.+......++.....+...+
T Consensus 246 ---s~~~------------------------~~~~~f~~si~~~~~n~~F~i----l-~~~ygi~~g~F~~l~~~l~~~l 293 (480)
T KOG2563|consen 246 ---SQAA------------------------LQDASFPKSIKSCFKNRQFII----L-AICYGIGLGLFNSLSTLLNLAL 293 (480)
T ss_pred ---hHhh------------------------hhcCcHHHHHHHHHcCccHHH----H-HHHHhhhHHHHHHHHHHhhhcc
Confidence 0000 001223456667787775432 1 1222222223444444444333
Q ss_pred HHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchh-HHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHH
Q psy10231 399 EDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRAL-ATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLAC 476 (607)
Q Consensus 399 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
...|++. .++....+..+.+++++.+.|.+.||.+.-+. .+.......++...+.... ......+++..
T Consensus 294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t---------~~~~~~viv~~ 364 (480)
T KOG2563|consen 294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT---------LFLGDSVIVFT 364 (480)
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---------ccCCceEehhh
Confidence 3345543 46778888888999999999999999876443 3333333333322211111 11222233344
Q ss_pred HHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh----hHHHHHHHHHHHHHHHH
Q psy10231 477 ILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN----MGGMMWAFSCACLLAMV 552 (607)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g----~~~~~~~~~~~~~~~~~ 552 (607)
.+...+.++.+..|+.+-+..|..=+..-++..|+.+..+++.+.+-..+.+...+..+ +...-+.....+++..+
T Consensus 365 t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 444 (480)
T KOG2563|consen 365 TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAI 444 (480)
T ss_pred hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHH
Confidence 44455566677788888888887544556888999999999999999999998888776 54455666666677777
Q ss_pred HhhhcccCCCCCC
Q psy10231 553 FIQAFLPETQGKT 565 (607)
Q Consensus 553 ~~~~~~~~~~~~~ 565 (607)
+..++.|+.++++
T Consensus 445 lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 445 LVAFFRPDYRRLR 457 (480)
T ss_pred HHhhhhhhHHhHh
Confidence 7666655444433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-14 Score=142.63 Aligned_cols=340 Identities=16% Similarity=0.143 Sum_probs=215.9
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh----hhcCch-hhhhhhhHHHHHHHHHHhcc
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD----LLGRKT-TVQLTAIPFIIGWTIITVSK 113 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D----r~Grr~-~l~~~~~l~~~~~~~~a~a~ 113 (607)
..+.....+..... +.+|++....|.+..+.-+--++.-|+.|.+.| |+||+| -++.+.+..++.+.++-.++
T Consensus 27 ~~~~~~~yLl~fYT--dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 27 AFGIVVLYLLFFYT--DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHHHHHHHHHHHHh--cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence 33333444444333 177999999999999999999999999999999 589865 55567788888888887776
Q ss_pred c------hhHHHHHHHHHhhhhhhHhh-hHhHHhhccC-CCccccccchhhHHHHHHHHHHHHHhhhh-----------h
Q psy10231 114 G------FTLLCVGRFITGMAIGMSSA-CYVYVAEICL-PNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----------T 174 (607)
Q Consensus 114 ~------~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----------~ 174 (607)
+ ....++.-++.+++...... --++..|+.+ +++|.+..+.-..+.++|.++...+...+ |
T Consensus 105 ~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 105 DFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred CcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 4 45666778888999888888 8889999987 78899999998888888876654444322 4
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcC
Q psy10231 175 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICL 254 (607)
Q Consensus 175 Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~ 254 (607)
|+..-.+.++++.+..+
T Consensus 185 ~~~~~~~~~vi~~i~~l--------------------------------------------------------------- 201 (467)
T COG2211 185 YQGTALVLGVIGVILLL--------------------------------------------------------------- 201 (467)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 44444444444443333
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCch
Q psy10231 255 PNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTA 334 (607)
Q Consensus 255 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~ 334 (607)
+.++.+.|.+. ++.+.++
T Consensus 202 ----------------------------------------------~~~~~v~ER~~---~~~~~~~------------- 219 (467)
T COG2211 202 ----------------------------------------------FCFFNVKERVV---ETQPTKT------------- 219 (467)
T ss_pred ----------------------------------------------HHHHHhhcccC---ccccCcc-------------
Confidence 23333444321 0000000
Q ss_pred hhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHH
Q psy10231 335 VADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASI 412 (607)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~ 412 (607)
. .+.+-.+++...++|++++..+...+ +.+.+.+........|.+. .|.+. .+.....
T Consensus 220 ---~------------~~~~~~~~~~~~~~Nrp~~~~l~~~l-----~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~ 279 (467)
T COG2211 220 ---G------------VKLKLKDSFLLIFKNRPLLLLLLMNL-----LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLL 279 (467)
T ss_pred ---c------------ccccHHHHHHHHHccchHHHHHHHHH-----HHHHHHHHHhhhhheeEEEEcCChHHHHHHHHH
Confidence 0 00011122334666776554333111 1222233333333333331 23322 2344555
Q ss_pred HHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhh
Q psy10231 413 IVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLP 492 (607)
Q Consensus 413 ~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (607)
......+++.++..++.+|+|+|+++..+.++.+++.+++-+.. .+.....++..++...+. ....++.
T Consensus 280 ~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----------~~~~~l~~~~~~i~~~g~-~~~~~l~ 348 (467)
T COG2211 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----------AGSVVLIVVALIIAGVGT-GIANPLP 348 (467)
T ss_pred HHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHh-hcccccc
Confidence 55666667789999999999999999999888888887765521 122333333334433433 3446888
Q ss_pred hhhhccccC-------ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 493 WVMIAELFP-------LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 493 ~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
|++++|... .+..|...|...++.-+|.+++..+.|+.++..|+
T Consensus 349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899888764 23448888999999999999999999998876553
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=127.74 Aligned_cols=364 Identities=14% Similarity=0.077 Sum_probs=211.3
Q ss_pred ccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhh-hhhhhHHHHHHHHHHhccc---hhHHHHHHHHHhhhhhhHhh-h
Q psy10231 61 SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTV-QLTAIPFIIGWTIITVSKG---FTLLCVGRFITGMAIGMSSA-C 135 (607)
Q Consensus 61 ~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l-~~~~~l~~~~~~~~a~a~~---~~~l~~~R~l~G~g~g~~~~-~ 135 (607)
+...+...++..+-.++-+++.|.++|+.|+||.. -+...+..++..+..++++ ++..++.-.+..++...... -
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 34568888889999999999999999999976655 4555666666777777765 44555567888888888888 9
Q ss_pred HhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHhcCCCCh--hhHhhccccccch
Q psy10231 136 YVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETP--SWLARQGMAIGEF 213 (607)
Q Consensus 136 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~Wr~~f~~~~~~~~~~~~~~~~~pes~--~~~~~~~~~~~~~ 213 (607)
.+++.+..++++-++..+.-.....+|..+.-++... .. ..-|++- +-+....+++++
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~-----------------~~--~~~~~~~~~~~l~~l~~~~~~- 196 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVL-----------------GF--ALGQQTGITIILLGLPPADGE- 196 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHH-----------------HH--hcccccceeEEeeccCccccc-
Confidence 9999999999999988877766666666553222110 00 0001110 000000000000
Q ss_pred hhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhH
Q psy10231 214 RYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACA 293 (607)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~ 293 (607)
.=|..+.++.
T Consensus 197 ----------------------------------------------------------------------~~ri~~~l~A 206 (438)
T COG2270 197 ----------------------------------------------------------------------DVRITGLLAA 206 (438)
T ss_pred ----------------------------------------------------------------------cchhHHHHHH
Confidence 0011111111
Q ss_pred -HHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHH
Q psy10231 294 -VVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPF 372 (607)
Q Consensus 294 -i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (607)
-..+..+..++.+++.++- ..+. + +......++..++ ++++.+.+..
T Consensus 207 ~W~li~~iPm~~~v~~~~~~---~~~~--~-----------~~l~~g~k~L~~t------------~k~i~~~~~i---- 254 (438)
T COG2270 207 LWWLLFALPMILNVHDAEKI---SSPP--P-----------TALRNGFKELKST------------FKEIRGRKNL---- 254 (438)
T ss_pred HHHHHHHhHHHhcccccccc---cccc--h-----------HHHHHHHHHHHHH------------HHHHhcccch----
Confidence 1111222234444443320 0000 0 0011122222222 2222333322
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 373 FILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
..+++..+...-+.+........+-. ..|.+.. .........+..++|+++.|++.||+|.|+++..+.++..+..+
T Consensus 255 -~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 255 -VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred -HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence 22223333334456777777777766 5577543 45677778899999999999999999999988888777666554
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
...+. ........+.++ .+.+..+.....=++..++.|++.-+..+|+.+..++..++.+|...+.+
T Consensus 334 ~~~~~------------~~~~~f~i~gll-~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 334 YLIFL------------EGELDFWILGLL-VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHHHc------------cccHHHHHHHHH-HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 44331 111122222222 22222233455558999999999999999999999999999999999998
Q ss_pred HHhhhhHH-HHHHHHHHHHHHHHHhhhcccCC
Q psy10231 531 MYLLNMGG-MMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 531 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.+..|-.. .+..+.++..++. +.+...|+.
T Consensus 401 t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~ 431 (438)
T COG2270 401 TQITGSSRAGVLSIIVLLLIGL-LLLLRVKVP 431 (438)
T ss_pred HHHhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence 88766432 3333333333333 334444544
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=142.91 Aligned_cols=304 Identities=17% Similarity=0.201 Sum_probs=201.2
Q ss_pred hccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc--
Q psy10231 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-- 112 (607)
Q Consensus 35 ~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-- 112 (607)
..++..++....+..+.+ .|++++.+.|++.+.+-++..+...+..+.+-|.-|-+.+-+|+++++++++++++-
T Consensus 108 ~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf 184 (735)
T KOG3626|consen 108 AQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHF 184 (735)
T ss_pred HHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHH
Confidence 345555555666666666 999999999999999999999999999999999999999999999999999998753
Q ss_pred ------------------c---------------------------c----h-hHHHHHHHHHhhhhhhHhh-hHhHHhh
Q psy10231 113 ------------------K---------------------------G----F-TLLCVGRFITGMAIGMSSA-CYVYVAE 141 (607)
Q Consensus 113 ------------------~---------------------------~----~-~~l~~~R~l~G~g~g~~~~-~~~~i~e 141 (607)
+ . + ..++++.++.|+|....++ +.+|+-|
T Consensus 185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD 264 (735)
T KOG3626|consen 185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD 264 (735)
T ss_pred hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence 0 0 2 2667789999999999999 9999999
Q ss_pred ccCCCccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHH-HhcCCCChhhHhhccccccchhhhccc
Q psy10231 142 ICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAA-MHAVPETPSWLARQGMAIGEFRYYLIP 219 (607)
Q Consensus 142 ~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~~~~~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~ 219 (607)
...+++-+..+++......+|.++|.+++++. .+..-+. .. .-.-|.-|||
T Consensus 265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~----------~~~~~it~~DPrW----------------- 317 (735)
T KOG3626|consen 265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG----------LSPIGITPTDPRW----------------- 317 (735)
T ss_pred cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc----------cCCCCCCCCCcch-----------------
Confidence 99999999999999999999999999888765 1111000 00 0001222222
Q ss_pred cchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHH
Q psy10231 220 SKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVG 299 (607)
Q Consensus 220 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 299 (607)
.-.|..-|++++...++.
T Consensus 318 --------------------------------------------------------------IGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 318 --------------------------------------------------------------IGAWWLGFLICGALLLFS 335 (735)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHHHHH
Confidence 345888888888887777
Q ss_pred HhhhccccCChHHHHHhCChHHHHHHHHHHhcCch--hhh-hHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHH
Q psy10231 300 FAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTA--VAD-AELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILI 376 (607)
Q Consensus 300 ~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (607)
.+.++++|.... +..+..++++ .+..+.+++ +.+ ...+.+ ++-....+++++|| +++..
T Consensus 336 a~p~f~fPk~lp---~~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~i---------kdfp~s~~~ll~N~-----if~~~ 397 (735)
T KOG3626|consen 336 AVPLFFFPKELP---KSQKRKRARD-LHVLKTESGGAKSDKTFGKKI---------KDFPKSIKRLLSNP-----IFMLV 397 (735)
T ss_pred HHHHHhCcccCc---cccccchhhh-hcccccccccccCCcchhhhH---------HHHHHHHHHHhcCc-----hHHHH
Confidence 777777776531 1110000000 000000000 000 000000 11234566778787 44445
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHH-HHHHHHHHHHHhHhhcccCC--chhHHHhhHHHHHH
Q psy10231 377 GFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIV-AGLRFFMAIIGSACIQMFSR--RALATTSAFFMALS 448 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~-~~~~~~~~~~~g~l~d~~gr--r~~l~~~~~~~~~~ 448 (607)
.+........+..+.+|+|.|+++ .|.+.. +..+.... -.+..+|.+++|++..|+.- |.......+...++
T Consensus 398 ~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 398 VLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 555556666788999999999975 466443 44443333 33456788899999998753 44444433333333
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=140.49 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=114.6
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcC-chhhhhhhhHHHHHHHHH-Hhc---c-chhH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGR-KTTVQLTAIPFIIGWTII-TVS---K-GFTL 117 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Gr-r~~l~~~~~l~~~~~~~~-a~a---~-~~~~ 117 (607)
....|.+++. |.+.+.+..||+.++..+|.++++++.|....|.+. |+.+++|.++..++.++- +++ + .-+.
T Consensus 55 ~s~wpYl~~l--D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~ 132 (488)
T KOG2325|consen 55 TSMWPYLQKL--DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL 132 (488)
T ss_pred eecchhhhhc--CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 4566777775 677889999999999999999999999999999997 899999999999999988 433 3 5789
Q ss_pred HHHHHHHHhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 118 LCVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 118 l~~~R~l~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
++++|++.|+|.|......+|+++....++|.++++....+..+|.++||.++..+
T Consensus 133 mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 133 MLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999888765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-15 Score=160.79 Aligned_cols=400 Identities=12% Similarity=0.095 Sum_probs=3.0
Q ss_pred cccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc---
Q psy10231 37 NLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK--- 113 (607)
Q Consensus 37 ~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~--- 113 (607)
++..++....+..+.+ .|++++++.|++.+.+-++..+..++..++++|..|=|.+-.|.++++++++++++-+
T Consensus 16 ~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 3444555667777777 9999999999999999999999999999999998888899999999999999876410
Q ss_pred -----------------------------------------------chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCC
Q psy10231 114 -----------------------------------------------GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLP 145 (607)
Q Consensus 114 -----------------------------------------------~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~ 145 (607)
-++.++++.++.|+|.+..++ +.+|+-|..++
T Consensus 93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 046788899999999999999 99999999999
Q ss_pred CccccccchhhHHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhh
Q psy10231 146 NDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINI 224 (607)
Q Consensus 146 ~~r~~~~~~~~~~~~lG~~ig~~l~~~l-~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (607)
++-+..+|++.....+|.++|.++++.+ +...= +++.+....
T Consensus 173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD-----------------~~~~~~~~~-------------------- 215 (539)
T PF03137_consen 173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVD-----------------FPKVPPDGV-------------------- 215 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccchhhhhHHhhccHHHHHHHHHHHHhceeC-----------------CccccccCC--------------------
Confidence 9999999999999999999998888753 10000 000000000
Q ss_pred hhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhc
Q psy10231 225 LQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMH 304 (607)
Q Consensus 225 ~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~ 304 (607)
+..|.+. .+...|..-+++.++..++..+.++
T Consensus 216 --------------------------~i~p~dp----------------------~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 216 --------------------------GITPSDP----------------------RWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------CCCCCCc----------------------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 1233577777777777777766666
Q ss_pred cccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhh
Q psy10231 305 AVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEA 384 (607)
Q Consensus 305 ~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (607)
.+|+.-. .+.+.++.++. ++.+.++.+.++..++.+.+...+.-++-....+++++||.+ +...+......
T Consensus 248 ~FPk~lp---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f-----~~~~la~~~~~ 318 (539)
T PF03137_consen 248 FFPKKLP---GTSERQEEKES-SERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVF-----MCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCC---Ccccccchhhh-hhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHH-----HHHHHHHHHHH
Confidence 6665421 11000000000 000000000000000000000011122334566677777744 34444444555
Q ss_pred hhHHHHHHHHHHHHHH-hCCCc-chHHH-HHHHHHHHHHHHHHHhHhhcccC--CchhHHHhhHHHHHHHHHHhhhh---
Q psy10231 385 SGMYIVLYYAVNFFED-AGSSL-DDYVA-SIIVAGLRFFMAIIGSACIQMFS--RRALATTSAFFMALSMGISGTYE--- 456 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~-~~~~~~~~~~~~~~~g~l~d~~g--rr~~l~~~~~~~~~~~~~~~~~~--- 456 (607)
.....+..|.|.|++. .+.+. .+... ..+.-.+..+|.+++|++.+|++ .|+.+....+...++.+.+...+
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 5678889999999985 35432 23333 23333466788999999999975 34444444444433333311110
Q ss_pred ---------hhhcc------c--c--------------------CCCC-CCChH-HHHHHHHHHHHHHhccchhhhhhhc
Q psy10231 457 ---------YYFSE------L--S--------------------MDDR-PLNWI-PLACILANVCASMLGMLQLPWVMIA 497 (607)
Q Consensus 457 ---------~~~~~------~--~--------------------~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (607)
..+++ . . -..+ ..... .++..++..........|.. ..+-
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~L 477 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITL 477 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeee
Confidence 00010 0 0 0000 01111 11222222222233333333 5566
Q ss_pred cccCccchhhHHHHHHHHHHH-HHHHHhhhcHHHHHhh
Q psy10231 498 ELFPLSVRGIMGGIVCSLGYL-FIFTTVKMYPDLMYLL 534 (607)
Q Consensus 498 e~~p~~~r~~~~g~~~~~~~~-~~~i~~~i~~~l~~~~ 534 (607)
..+|+++|+.|.|+...+.++ |.+-+|.++|.+.|..
T Consensus 478 R~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 478 RCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------
T ss_pred ccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 889999999999999988875 5677899999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-14 Score=149.76 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=105.5
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHH---HHhccchhHHHHHHHHHhhhhhhH
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTI---ITVSKGFTLLCVGRFITGMAIGMS 132 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~---~a~a~~~~~l~~~R~l~G~g~g~~ 132 (607)
++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+..
T Consensus 280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 67888888888888899999999999999999999999988877654443322 223456788889999999988877
Q ss_pred hh-hHhHHhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHHHhcCCCChh
Q psy10231 133 SA-CYVYVAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAAMHAVPETPS 201 (607)
Q Consensus 133 ~~-~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~~~pes~~ 201 (607)
.. ...++.|.+|++.|+..++. ++.+. ++..++|.+.+++ +|+..+++..+++++..+..+++||||+
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 77 88889999999999999886 45544 4445666665554 4666666555555555443333344433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=117.87 Aligned_cols=133 Identities=23% Similarity=0.412 Sum_probs=118.6
Q ss_pred HHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCC
Q psy10231 67 IASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLP 145 (607)
Q Consensus 67 i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~ 145 (607)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+...+ ...++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCCCC
Q psy10231 146 NDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVPET 199 (607)
Q Consensus 146 ~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~pes 199 (607)
++|++..++......+|..+++.+++.+ +|++.|++.++..++..+.. +..||+
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999998877 89999999888877766554 445553
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-10 Score=109.43 Aligned_cols=319 Identities=12% Similarity=0.115 Sum_probs=195.9
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhc-----Cchhhhh-hhhHHHHHHHHHHhc-----c-------ch--
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLG-----RKTTVQL-TAIPFIIGWTIITVS-----K-------GF-- 115 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~G-----rr~~l~~-~~~l~~~~~~~~a~a-----~-------~~-- 115 (607)
|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||..+++ |.++...+..+..++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 788888888888888887775 5899999999999 8887776 566666655555543 2 22
Q ss_pred --hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHH
Q psy10231 116 --TLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVAL 187 (607)
Q Consensus 116 --~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~ 187 (607)
....+.-.+.|+|.+...+ ..++++|..++++|+++.++...+.-+|.+++..+.+.+ .-|..-.+.....+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 2334457888999999999 999999999999999999999999999999998887766 12222222211111
Q ss_pred HHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 188 VGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 188 ~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
...+
T Consensus 168 ~~~l---------------------------------------------------------------------------- 171 (403)
T PF03209_consen 168 ALLL---------------------------------------------------------------------------- 171 (403)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSL 347 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (607)
.++..+. .|.++ .+.. +..
T Consensus 172 -------------------------------~~ia~wg-~E~r~-------~~~~--------~~~-------------- 190 (403)
T PF03209_consen 172 -------------------------------NLIALWG-QEPRR-------SRRA--------AAA-------------- 190 (403)
T ss_pred -------------------------------HHHHHHh-cccCC-------cccc--------cCC--------------
Confidence 0011111 12100 0000 000
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-H-----HhCCCcc-hHHHHHHHHHHHHH
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFF-E-----DAGSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~g~~~~-~~~~~~~~~~~~~~ 420 (607)
++++.+-.+.+.+...+|+.++ ++....+. .+.+++.+.+ + -.|++.. ........+.+.++
T Consensus 191 -~~~~~~f~~a~~~~~~~~~a~~-f~~fl~l~---------t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~ 259 (403)
T PF03209_consen 191 -ERPRPPFREAWRQVWASPQARR-FFVFLFLG---------TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLL 259 (403)
T ss_pred -CCCCccHHHHHHHHHhCCChhH-HHHHHHHH---------HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0001111234455566666554 32222222 2222232222 2 1255433 34567777788888
Q ss_pred HHHHHhHhhc-ccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccc
Q psy10231 421 MAIIGSACIQ-MFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAEL 499 (607)
Q Consensus 421 ~~~~~g~l~d-~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 499 (607)
+....+++.. |.++++....+.....++...+...... .+.+.......+++.+.+...... ...+.++
T Consensus 260 G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~---------~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~l 329 (403)
T PF03209_consen 260 GMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL---------GSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDL 329 (403)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHhhhHHHHHH-HHHHHhC
Confidence 8888888765 6777777777777777666655443221 334444444444444443332222 2556677
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 500 FPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 500 ~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
.+++..|..+|.-...+.+...++..+.|.+.|.
T Consensus 330 t~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 330 TSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999888888888888774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=129.11 Aligned_cols=179 Identities=13% Similarity=0.021 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+....+..+...........+.|.+.++.|.+.. .+.......++.+++.++.|++.||+|||+.+..+..+..++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 97 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL 97 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333333333334445566677877777777543 45666777788899999999999999999999988887777766
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
+.... ...+....... ..........+...+++.|.+|++.|+.+.++......+|..+++.+.+.+
T Consensus 98 ~~~~~------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 98 LCALA------------TNVTQLLILRF-LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHc------------cchHHHHHHHH-HHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 65541 12222222222 222222334566678999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 531 MYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 531 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.+..+|+..+++.+.+.++..++...++||+.+
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred hhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 998999888888776666666666666777643
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=136.45 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=121.2
Q ss_pred hHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhcc
Q psy10231 65 SWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEIC 143 (607)
Q Consensus 65 ~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~ 143 (607)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++..+ ..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445677789999999999999999999999999999999999999999988999999999999998999 999999999
Q ss_pred CCCccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHHHHHHhcCCCCh
Q psy10231 144 LPNDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVVALVGFAAMHAVPETP 200 (607)
Q Consensus 144 ~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~~~~~~~~~~~~pes~ 200 (607)
|.++|++++++......+|.+++|.+++.+ +....|++.++..++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998866 456677777777777777677789885
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=120.86 Aligned_cols=179 Identities=9% Similarity=0.009 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+....+.++.+...........|.+.++.+.+.. .+.......++..++.+..|++.||+|||+.+..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44444444444444455556666766667777554 46677778888899999999999999999999988888888777
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
..++. .+.+..+. .-.+.+.......+....++.|.+|++.|+.+.|+.+....+|..+++.+.+.+
T Consensus 89 ~~~~~------------~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 89 ATMFA------------TGPESLYL-LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHh------------cCHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76652 12222222 222333333334466667889999999999999999999999999999998887
Q ss_pred HH------hhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 531 MY------LLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 531 ~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.+ ..||+..|.+.+...++..++.++++||+++
T Consensus 156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 64 3589999999888887777777777788764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-11 Score=124.37 Aligned_cols=163 Identities=13% Similarity=-0.031 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.......|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+.++..++....++.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 4455556666667777543 5677788889999999999999999999999998888877777666552
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCA 546 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~ 546 (607)
...+.......+.+.+ .....+....++.|.+|++.|+.+.++......+|..+++.+.+.+.+..+|+..+++.+.+
T Consensus 80 -~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157 (399)
T ss_pred -cCHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 1222333333333333 33345666689999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhhhcccCCCC
Q psy10231 547 CLLAMVFIQAFLPETQG 563 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~~ 563 (607)
.++..++..+..||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHhhheecCCCC
Confidence 77777766666666544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=123.49 Aligned_cols=174 Identities=7% Similarity=-0.134 Sum_probs=126.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHh
Q psy10231 375 LIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISG 453 (607)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~ 453 (607)
..++..+...........+.|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+.++..++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 33344444333344567778888888888654 46677788888999999999999999999999988888888777665
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 454 TYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
.. ...+.......+.+.+.+. ..+....++.|.+|+++|+.++|+.+....+|..+++.+.+.+.+.
T Consensus 107 ~~------------~~~~~l~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 107 FS------------SSLWAFALLWVLNAFFQGW-GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred HH------------hHHHHHHHHHHHHHHHHHc-cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 52 1122222222222222332 2355568889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 534 LNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 534 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.||+..|++.++++++..++..+.+||+
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999888877666655555555654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-10 Score=112.67 Aligned_cols=173 Identities=17% Similarity=0.058 Sum_probs=145.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHH
Q psy10231 374 ILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGIS 452 (607)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~ 452 (607)
..+.+..|......+...-.+|.+-++.+.+.. ++.....++++..++.++...+.||+.||++++....++.++.++.
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~ 95 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence 344444455555567777888899888888654 6888899999999999999999999999999999999999999888
Q ss_pred hhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy10231 453 GTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532 (607)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 532 (607)
++ .+++..+...=+........+.++..++..++.|+++|+++.++..+-..+...++.++..++-+
T Consensus 96 al-------------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 96 AL-------------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HH-------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 87 44555555544444445555567777999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 533 LLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 533 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
..||+..|+..+.++++..+..+..+|
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=119.67 Aligned_cols=168 Identities=13% Similarity=0.005 Sum_probs=124.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccc
Q psy10231 384 ASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSEL 462 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
..+........|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------- 90 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------- 90 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 33444555556777777777543 5667778888899999999999999999999998888887777666541
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHH
Q psy10231 463 SMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542 (607)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~ 542 (607)
+..+.......+.+.+ .....+....++.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+++
T Consensus 91 -----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 -----NNIETLLVLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred -----ccHHHHHHHHHHHHcc-hhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 1222222222222222 2223455568889999999999999999999999999999999999998999999988
Q ss_pred HHHHHHHHHHHhhhcccCCCCC
Q psy10231 543 FSCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~ 564 (607)
.+.+.++..++..+..||++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC
Confidence 8888777777766666776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=117.70 Aligned_cols=160 Identities=10% Similarity=-0.007 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 390 VLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
.....|.+.++.|.+.. .+.......+...++.+..|.+.||+|||+.+..+..+..++.+..++. +
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~ 95 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------W 95 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------c
Confidence 33446777777777554 4566667777788888999999999999999999988888887766552 2
Q ss_pred CChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHH
Q psy10231 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACL 548 (607)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~ 548 (607)
+.+..++.-.+ .+.......+....++.|.+|++.|+.+.|+......++..++|.+.+.+.+..||+..|++.+.+++
T Consensus 96 ~~~~l~~~r~~-~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~ 174 (390)
T PRK03545 96 NFTVLLISRIG-IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174 (390)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence 22222322222 22222233455567889999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHhhhcccCCC
Q psy10231 549 LAMVFIQAFLPETQ 562 (607)
Q Consensus 549 ~~~~~~~~~~~~~~ 562 (607)
+..+......|+.+
T Consensus 175 l~~~~~~~~~~~~~ 188 (390)
T PRK03545 175 ITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHhCCCCC
Confidence 77666666566643
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-10 Score=116.98 Aligned_cols=181 Identities=14% Similarity=0.051 Sum_probs=126.9
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHH
Q psy10231 368 VWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMA 446 (607)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~ 446 (607)
.|+.++......+.... ..+......|.+.++.|.+.. .+.......+...++.++.|.+.||+|||+.+..+..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 18 NWSAVFSVAFCVACLII-VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 35444444333332222 223334456777777777544 4666677788888999999999999999999999999888
Q ss_pred HHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhh
Q psy10231 447 LSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKM 526 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i 526 (607)
++.++.... .+.+..+..-.+.+.+.+. ..+....++.|.+|++.|+.+.++.....+++..++|.+
T Consensus 97 ~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 163 (394)
T PRK10213 97 LSCLLVSFA------------NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPL 163 (394)
T ss_pred HHHHHHHHH------------ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666541 1222333333333333322 346666888999999999999999999999999999999
Q ss_pred cHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 527 YPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 527 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
.+.+.+..||+..|++.+.++++..+......||++
T Consensus 164 ~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 164 GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999998887776665555444556643
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=126.59 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=122.5
Q ss_pred ccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc----chhHHHHHHHHHhhhhhhHhh-h
Q psy10231 61 SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK----GFTLLCVGRFITGMAIGMSSA-C 135 (607)
Q Consensus 61 ~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~----~~~~l~~~R~l~G~g~g~~~~-~ 135 (607)
..+.+.+.+...++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+ .
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999988877776642 246677889999999999999 8
Q ss_pred HhHHhhccCCCccccccchhh-HHHHHHHHHHHHHhhhh----------hHHHHHHHhHHHHHHHHHHH-hcCCCChhhH
Q psy10231 136 YVYVAEICLPNDRGYLSAFGP-VFVSLGVLIVYSLGYIV----------TWQYTSAACAVVALVGFAAM-HAVPETPSWL 203 (607)
Q Consensus 136 ~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l----------~Wr~~f~~~~~~~~~~~~~~-~~~pes~~~~ 203 (607)
..++.|.+|+++|++..++.+ ...++|..+||.+++.+ ||+..|++.+++.++..++. +++||+.+..
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 999999999999999999997 67889999999999876 28999999888877766554 6678885443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=117.64 Aligned_cols=178 Identities=9% Similarity=0.039 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHH
Q psy10231 373 FILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGI 451 (607)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~ 451 (607)
+.......+....+........|.+.++.|.+.. .........++..++.++.|+++||+|||+.+..+.....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3344444445555566667788888888777554 455667777888889999999999999999999888877777766
Q ss_pred HhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH
Q psy10231 452 SGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 531 (607)
.... ...+..+....+.+.+ .....+....++.|.+|++.|+++.++.+....++..++|.+.+.+.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 85 CSLA------------ETSSLFLAGRFLQGIG-AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHh------------CcHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5541 1112222222222222 22223455678899999999999999999999999999999988888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 532 YLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 532 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+..+|+..+++.+.++++..++..+..||+++
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88899988988888887777776666777653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-10 Score=115.70 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=123.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 377 GFFLFQEASGMYIVLYYAVNFFEDAGSSLDD------YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+..+....+......+.|.+.++.|.+... +....+..+...++.++.|+++||+|||+.+..+....+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 3333444445566677888888887765332 4456667778889999999999999999999988877777766
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
++... .+.+..+....+.+.. .+..+....+..|.+|++.|+.+.++.+....++..+++.+.+.+
T Consensus 100 ~~~~~------------~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 100 LMGLA------------QNIWQFLILRALLGLL--GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHHH------------hhHHHHHHHHHHHHHh--hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55431 1222222222222222 233455556778899999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 531 MYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 531 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.+..+|+..+++.+.+.++..+...++.||.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 166 ADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9989999899888888777776666666664
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=117.41 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=119.2
Q ss_pred hhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhh
Q psy10231 382 QEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYF 459 (607)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~ 459 (607)
....+.+....+.+.++++ .|.+.. .+.......+...++.++.|+++||+|||+.+..+.....++.+.+++.
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~---- 93 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV---- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----
Confidence 3444566677777877754 577543 5666777778888999999999999999999988887777776655541
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHH
Q psy10231 460 SELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGM 539 (607)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~ 539 (607)
+..+..+.......... ....+....+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .+|+..
T Consensus 94 --------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~ 163 (395)
T PRK10054 94 --------NNVTLVVLFFALINCAY-SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLP 163 (395)
T ss_pred --------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcH
Confidence 11222222222222222 23345566788899999999999999999999999999999998775 688888
Q ss_pred HHHHHHHHHHHHHHhhhcccCCC
Q psy10231 540 MWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
|+..+.+.++..++..+.+|+++
T Consensus 164 f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 164 FWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 88887777776665555555543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=121.38 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=110.5
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh---c-Cch-hhhhhhhHHHHHHHHHHhc----cc
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL---G-RKT-TVQLTAIPFIIGWTIITVS----KG 114 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~---G-rr~-~l~~~~~l~~~~~~~~a~a----~~ 114 (607)
....|.+++ ++++++.+.....+...+...+ -++.|.++|-+ | ||| -++++.++..++.+..+.. .+
T Consensus 10 ~~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 10 LAIYPFLKD---DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 355677888 9999999999999999998876 68999999976 3 444 4455776665555555553 34
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccC--CCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICL--PNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVAL 187 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~ 187 (607)
.....+.-++..+|.+.... +-+.+.|... ++.||...+.......+|.+++..+++.+ ++|..|.+.+++.+
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 66777778889999999999 9999999985 34467777888888888999988888777 78888877776665
Q ss_pred HHHH
Q psy10231 188 VGFA 191 (607)
Q Consensus 188 ~~~~ 191 (607)
+..+
T Consensus 166 l~~~ 169 (433)
T PF03092_consen 166 LMLI 169 (433)
T ss_pred HHHH
Confidence 5544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=118.09 Aligned_cols=168 Identities=13% Similarity=-0.066 Sum_probs=121.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhc
Q psy10231 382 QEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFS 460 (607)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.............|.+.++.+.+.. .+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----- 100 (406)
T PRK11551 26 LEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----
Confidence 3333345556667777777777543 5667777888899999999999999999999998887777766555441
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHH
Q psy10231 461 ELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMM 540 (607)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~ 540 (607)
.+.+..+....+.+.+. ....+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..+|+..+
T Consensus 101 -------~~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 172 (406)
T PRK11551 101 -------WDFPSLLVARLLTGVGL-GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIF 172 (406)
T ss_pred -------ccHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 12222233333222222 2234556688999999999999999999999999999999888888888898888
Q ss_pred HHHHHHHHHHHHHhhhcccCCC
Q psy10231 541 WAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
++.+.+.++..++...++||+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 173 YVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCCh
Confidence 8877766666665566667754
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-11 Score=122.51 Aligned_cols=142 Identities=14% Similarity=0.169 Sum_probs=121.2
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+.......+++.+.+++.|++.+++.|...+
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998888888888999999999999999988877766666555556678888888999999999888888
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCCC
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVPE 198 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~pe 198 (607)
...+..|..|+ +|+++.++.+....+|..+++.+++.+ +|+..|++.+++.++..+..+++||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888999875 589999999888899999999888877 8999999988888887776666665
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=121.93 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=97.5
Q ss_pred HHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhh--hhHhh-hHhHHhhccCCC
Q psy10231 70 LGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAI--GMSSA-CYVYVAEICLPN 146 (607)
Q Consensus 70 ~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~--g~~~~-~~~~i~e~~~~~ 146 (607)
...+...+.++..|.++||+|||..+....+...+..+...+.. |++++ +.|+.. +.... ..++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34677788899999999999999999999998888887777766 33333 444443 34444 899999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCCCC
Q psy10231 147 DRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVPET 199 (607)
Q Consensus 147 ~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~pes 199 (607)
+|....++....+..+..++|.+++.+ |.-..|++..+..++..+.. +++||+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999887 66667777777766665532 445555
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=120.96 Aligned_cols=144 Identities=10% Similarity=0.070 Sum_probs=123.9
Q ss_pred cccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-h
Q psy10231 57 ISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-C 135 (607)
Q Consensus 57 ~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~ 135 (607)
.+.+..+.|++.+...++..++.++.|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+ .
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667889999999999999999999999999999999999999999989999999999999999999999998888 8
Q ss_pred HhHHhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCCCCh
Q psy10231 136 YVYVAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVPETP 200 (607)
Q Consensus 136 ~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~pes~ 200 (607)
..++.|.+|++.|+...+. ++....+|.++++.+.+.+ |||..|.+.+++.++..+.. +..++.+
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8999999999999887765 6777889999999888877 89999999888877655544 4444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=123.15 Aligned_cols=176 Identities=14% Similarity=0.010 Sum_probs=132.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHh
Q psy10231 375 LIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISG 453 (607)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~ 453 (607)
.+.+..+.............|.+.++.|.+. +..+......++..++.++.|++.||+|||+.+..+..+..++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455667777888888888754 356777888899999999999999999999999999888888777665
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 454 TYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
. ......+.....+.+.......+....++.|.+|++.|+.+.++......++..+++.+.+.+.++
T Consensus 86 ~-------------~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 152 (485)
T TIGR00711 86 V-------------APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN 152 (485)
T ss_pred C-------------cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence 4 122222333333333333344566778899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 534 LNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 534 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.+|++.|++.+.+.++..++..+..||+++
T Consensus 153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 153 YHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred cCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 999999988887777777666666676543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=114.65 Aligned_cols=182 Identities=10% Similarity=-0.074 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHH
Q psy10231 369 WKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMAL 447 (607)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~ 447 (607)
+.++++...+........=..+..-.|.+.++.+++.. .+.....+.+...++..+.|.++||.+.|..+..++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 44455555444443222233445556777777667654 57788888999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc
Q psy10231 448 SMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY 527 (607)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 527 (607)
..+++++. +..+...++..+-+.+-+.++ |.+...++.-+|+++||+..++-++..++|+.+.+++.
T Consensus 107 ~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 107 VNILFGFS------------PSLFLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHhhh------------hHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99999882 222333444444455555565 55558888999999999999999999999999999999
Q ss_pred --HHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 528 --PDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 528 --~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+.+.++.+|+..|++-++++++.+++.++.++++.+
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 888888899999999999999999888888766543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=114.13 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+..+.+..+.............|.+.++.|.+.. .+.......+...++.++.|.+.||+|||+.+..+..+.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34444455555555566667777777777777543 56677788889999999999999999999999988887777776
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
..++. ...+..+....+.+. ......+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+
T Consensus 93 ~~~~~------------~~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 93 ACGFA------------PGYITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHh------------ccHHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66541 122222222222222 22333455668889999999999999999999999999999999988
Q ss_pred HHhhh--hHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 531 MYLLN--MGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 531 ~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
.+..+ |+..+.+.+...++. ++.....||++
T Consensus 160 ~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 160 VPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred HHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 87766 887776654444433 33344556654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=118.66 Aligned_cols=178 Identities=12% Similarity=-0.008 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+...++..+........+..-.|.+.++.|.+. +..+....+.++...+.+..|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444445555555556667777899888887754 356677777888888899999999999999999999998888887
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhcccc-CccchhhHHHHHHHHHHHHHHHHhhhcHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELF-PLSVRGIMGGIVCSLGYLFIFTTVKMYPD 529 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 529 (607)
..+.. ++.+..+..-.+.+. ......+.....+.+.+ |++.|+.+.|+......+|..++|.+.+.
T Consensus 87 ~~~~a------------~~~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 87 AAAFS------------PTASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHc------------CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652 222233332222232 22233444445555554 77899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 530 LMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 530 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
+.++.+|++.|++...++++..++..+++|+.+
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999988888777777777777654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=113.87 Aligned_cols=164 Identities=7% Similarity=-0.064 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC
Q psy10231 387 MYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD 465 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
........|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+..+.+++.++.++.
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34555667777777777544 5677788889999999999999999999999999988888887766552
Q ss_pred CCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHH
Q psy10231 466 DRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSC 545 (607)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~ 545 (607)
++.+..+..-.+.+.+.+ ...+....++.|.+|++.|+.++++......++..+++.+.+.+.+..+|+..|++.+.
T Consensus 89 --~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred --CcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 122223332222222222 22344456788999999999999999999999999999999998888899999999888
Q ss_pred HHHHHHHHhhhcccCCCC
Q psy10231 546 ACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~ 563 (607)
+.++..+...+..||.++
T Consensus 166 ~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 166 FNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHHHhCCCCCc
Confidence 777776666666777543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-11 Score=121.84 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=119.6
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccch--hHHHHHHHHHhhhhhhHh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGF--TLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~--~~l~~~R~l~G~g~g~~~ 133 (607)
+++.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..+.++. ..+++..++.|++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 678888899999999999999999999999999999999999999999888888777653 335567888999998888
Q ss_pred h-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHH
Q psy10231 134 A-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 134 ~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~ 190 (607)
+ ...++.|.+|+++|++..++......+|..++|.+.+.+ ||++.|++.+++.++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 8 889999999999999999999999999999999988876 89999999888776653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-09 Score=114.11 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=112.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 378 FFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
..++..+...+....+.|.+.++.|.+.+ .+.......++..++.++.|+++||+|||+.+..+.+...++.++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~- 121 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-
Confidence 33344444455566667777777787554 3455666677788899999999999999999888877777776655541
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH----
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY---- 532 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~---- 532 (607)
.+.+..+..-++.+.+. ... .....++.|.+|++.|+.++|+.+...++|..+++.+.+.+..
T Consensus 122 -----------~s~~~l~~~r~l~G~~~-~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~ 188 (476)
T PLN00028 122 -----------SSATGFIAVRFFIGFSL-ATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD 188 (476)
T ss_pred -----------cCHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222222222222 222 2233567899999999999999998888888887776655432
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 533 -----LLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 533 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
..||+..|++.+++.++..++.+++.+
T Consensus 189 ~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 189 AGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 147999999988888777666555433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=116.00 Aligned_cols=171 Identities=10% Similarity=-0.060 Sum_probs=125.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 378 FFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
+..+......+.+..+.|.+.++.|.+.. .+.......++..++.++.|+++||+|||+.+..+..+..++.+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 33444444556777888999988887654 3456666677788899999999999999999988877777666554431
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
.+.+..+....+.+. ......+....++.|.+|++.|+++.|+.+....++..++|.+.+.+.+..+|
T Consensus 96 -----------~~~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw 163 (471)
T PRK10504 96 -----------GTLNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW 163 (471)
T ss_pred -----------CCHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence 122222222222222 22233456668889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 537 GGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
++.|++....+.+..+......|+.
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999888777777776666665654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=113.28 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=114.0
Q ss_pred HHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHH
Q psy10231 395 VNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIP 473 (607)
Q Consensus 395 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (607)
|.+.++.+.+.. ......++.++..++.++.|.++||+|||+.+..+..+..++.+..... .+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~l 107 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------TSMTQF 107 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------CCHHHH
Confidence 344455566443 4556677778888999999999999999999998888777777666541 122222
Q ss_pred HHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 474 LACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
+..-.+.+.+.+ ...+..+.+..|.+|++.|++++++.+....++..++|.+.+.+.+..||+..|++.++..++..+.
T Consensus 108 ~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 108 LIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 222222222222 2234455778899999999999999999999999999999998888889999999988888877766
Q ss_pred hhhcccCCCC
Q psy10231 554 IQAFLPETQG 563 (607)
Q Consensus 554 ~~~~~~~~~~ 563 (607)
.++.+||+++
T Consensus 187 ~~~~lp~~~~ 196 (413)
T PRK15403 187 LLLAMPETVK 196 (413)
T ss_pred HHHhCCCCcc
Confidence 6666788654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=121.21 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=120.3
Q ss_pred cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHh
Q psy10231 62 DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVA 140 (607)
Q Consensus 62 ~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~ 140 (607)
.+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++.++.+|.+.+++.+++.|++.+...+ ....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999999999998888888888889998899999999999999998 888889
Q ss_pred hccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCCCC
Q psy10231 141 EICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVPET 199 (607)
Q Consensus 141 e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~pes 199 (607)
|..|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+...++..+...++++.
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999998888777766 89999999888887776665555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-11 Score=119.61 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=134.6
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCch-hhhhhhhHHHHHHHHHHhccchhHHHHHH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKT-TVQLTAIPFIIGWTIITVSKGFTLLCVGR 122 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~-~l~~~~~l~~~~~~~~a~a~~~~~l~~~R 122 (607)
....|.+.+ +.+|.++.+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.++..+.++.+.+.+..
T Consensus 195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 272 (352)
T cd06174 195 LTYLPLYLQ--EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL 272 (352)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344455544 134889999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHh
Q psy10231 123 FITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMH 194 (607)
Q Consensus 123 ~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~ 194 (607)
++.|++.+...+ ..+++.|..|+++|++..++......+|..+++.+.+.+ +|++.+++.+++.++..+..+
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999 999999999999999999999999999999999999877 899999999998888766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-10 Score=114.29 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=119.9
Q ss_pred HHHHHHHHH-HHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC
Q psy10231 387 MYIVLYYAV-NFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM 464 (607)
Q Consensus 387 ~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
........| .+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence 444555666 4445566544 45677788888999999999999999999999999988888884444321
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHH
Q psy10231 465 DDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~ 544 (607)
.+.+..+.... ..........+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|+..+++.+
T Consensus 83 ---~~~~~~~~~~~-l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 83 ---SNFWLLLIARF-LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp ---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred ---hhHHHHhhhcc-ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 12232333333 33333334456677899999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHhhhcccCCCC
Q psy10231 545 CACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (607)
.+.++..++...+.++++.
T Consensus 159 ~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHHHCCC---ST
T ss_pred chhhhhhhhHhhhhhhccc
Confidence 9988887765455554433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=118.92 Aligned_cols=164 Identities=9% Similarity=-0.126 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC
Q psy10231 387 MYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD 465 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
...+....|.+.++.|.+.. .+.......++..++.++.|+++||+|||+.+..+..+..++.++..+.
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 34555666777677777544 5677788888999999999999999999999999988888877776652
Q ss_pred CCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHh-hhcHHHHHhhhhHHHHHHHH
Q psy10231 466 DRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTV-KMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~-~i~~~l~~~~g~~~~~~~~~ 544 (607)
...+..++... ....+.....+....++.|.+|++.|+.+.++.+....+|..+++ .+.+.+.+..+|+..+++.+
T Consensus 81 --~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 81 --TSLWVMAALWA-LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred --hhHHHHHHHHH-HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 12222222222 222333334566678999999999999999999999999999999 46666667778888888888
Q ss_pred HHHHHHHHHhhhcccCCCC
Q psy10231 545 CACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (607)
.+.++..++.+++.||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHHHHHheeeCCCcc
Confidence 7777776666666666543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=112.37 Aligned_cols=163 Identities=13% Similarity=0.037 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+....|.+.++.+.+.. .........++..++.++.|.++||+|||+.+..+.....++.+.....
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 98 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----------- 98 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3444445666667776543 4556677788889999999999999999999988887777776665441
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCA 546 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~ 546 (607)
...+..+....+.+... ....+.......|.+|++.|..+.++......++..++|.+.+.+.+..+|+..+++.+++
T Consensus 99 -~~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~ 176 (406)
T PRK15402 99 -QSIEQFTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAAL 176 (406)
T ss_pred -ccHHHHHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 11222222222222222 2223555677889999999999999998888899999999999998888999999888888
Q ss_pred HHHHHHHhhhcccCCCC
Q psy10231 547 CLLAMVFIQAFLPETQG 563 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~~ 563 (607)
+++..+..++..||+++
T Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 177 AALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 87777666666777653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=110.73 Aligned_cols=162 Identities=10% Similarity=0.025 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC
Q psy10231 387 MYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD 465 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
........|.+..+.+.+. +.+.......+...++.++.|+++||+|||+.+..+..+..++.+........
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------- 87 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------- 87 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3444555566666656543 35667777888899999999999999999999998887777766655543211
Q ss_pred CCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHH
Q psy10231 466 DRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSC 545 (607)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~ 545 (607)
.....+..+....+.+. ......+...+++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.+..+|+..+++.+.
T Consensus 88 ~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 88 GGLNIWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred CCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 00122333333333332 23333466668999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHhhh
Q psy10231 546 ACLLAMVFIQA 556 (607)
Q Consensus 546 ~~~~~~~~~~~ 556 (607)
..++..++...
T Consensus 167 ~~~~~~~~~~~ 177 (365)
T TIGR00900 167 GFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHh
Confidence 66655544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-09 Score=112.15 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=112.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHh
Q psy10231 375 LIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISG 453 (607)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~ 453 (607)
...+..+.............|.+.++.|.+.. .........++..++.++.|++.||+|||+.+..+.+..+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555566666667777543 56677778888999999999999999999999999988888877665
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 454 TYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
+. ...+..++.-.+.+ .......+....++.|.+|++.|+.+.++......+|..+++.+.+.+.+.
T Consensus 102 ~~------------~~~~~l~~~r~l~G-~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 102 LA------------SGVIMLTLSRFIVG-MGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HH------------hHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 52 11222222222222 222233455668889999999999999999999999999999988888888
Q ss_pred hhhHHHHHHHH
Q psy10231 534 LNMGGMMWAFS 544 (607)
Q Consensus 534 ~g~~~~~~~~~ 544 (607)
.+|+..+++..
T Consensus 169 ~~w~~~f~i~~ 179 (426)
T PRK12307 169 YGWRAAFFVGL 179 (426)
T ss_pred CCHHHHHHHHH
Confidence 89998887643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=113.02 Aligned_cols=163 Identities=10% Similarity=-0.027 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 390 VLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+....|.+.++ +.+.. .+.......+...++.++.|+++||+|||+.+..+.++.+++.+.+++.... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~ 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence 34556665555 76544 4667777888899999999999999999999998888887777666542100 01
Q ss_pred CChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc-HHHHHhhhhHHHHHHHHHHH
Q psy10231 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY-PDLMYLLNMGGMMWAFSCAC 547 (607)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~-~~l~~~~g~~~~~~~~~~~~ 547 (607)
..+..+....+.+.+.+ ...+.....+.|.+|++.|+.+.|+.+....+++.+.+++. ..+....+|+..|++.+.+.
T Consensus 119 ~~~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~ 197 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA 197 (452)
T ss_pred cHHHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11222222222233222 23344446778899999999999999888888865444333 33333458888888888877
Q ss_pred HHHHHHhhhcccCCC
Q psy10231 548 LLAMVFIQAFLPETQ 562 (607)
Q Consensus 548 ~~~~~~~~~~~~~~~ 562 (607)
++..++..+++||+.
T Consensus 198 ~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 198 ILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHccCCH
Confidence 777666666767654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-09 Score=108.98 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhcccc
Q psy10231 386 GMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELS 463 (607)
Q Consensus 386 ~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+.+....+.+.+++ +.|.+.. .+.......+...+..++.|+++||+|||+.+..+.....++.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------- 96 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------
Confidence 34566666676664 4566443 4556666677777888999999999999999999988888887776541
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHH
Q psy10231 464 MDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAF 543 (607)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~ 543 (607)
+..+.......+.+.+. ....+...+++.|.+|++.|+++.|+.+...+++..++|.+.+.+. ..+|+..|++.
T Consensus 97 ----~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 97 ----HEPWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred ----ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 12233333333223222 2234555678889999999999999999999999999999999988 67898888888
Q ss_pred HHHHHHHHHHhhhcccCC
Q psy10231 544 SCACLLAMVFIQAFLPET 561 (607)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~ 561 (607)
+.+.++..++..+..||.
T Consensus 171 ~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 877776666555556654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-09 Score=109.04 Aligned_cols=162 Identities=7% Similarity=-0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCC
Q psy10231 389 IVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDR 467 (607)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
......|.+.++.+.+.. .........+...++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 93 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------ 93 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 334445777777777554 4667777888899999999999999999999988877777766655431
Q ss_pred CCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHH
Q psy10231 468 PLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCAC 547 (607)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~ 547 (607)
+..+..+....+.+.+.+ ...+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..+|+..|++.+...
T Consensus 94 ~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~ 172 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG 172 (394)
T ss_pred ccHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 112222222222222222 2234445677888898999999999999889999999999999888889999998887777
Q ss_pred HHHHHHhhhcccCCCC
Q psy10231 548 LLAMVFIQAFLPETQG 563 (607)
Q Consensus 548 ~~~~~~~~~~~~~~~~ 563 (607)
++..++..++.||+++
T Consensus 173 ~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 173 AGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHhCCccCc
Confidence 6665555556677543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=116.49 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=120.2
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+...+
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (375)
T TIGR00899 229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI 308 (375)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999998888778888899999999999999999888777666666666778888888999999999999888
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcCC
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAVP 197 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~p 197 (607)
...++.|..|+ +|+++.++.+....+|..+++.+++.+ +|+..|++.++..++..+...+++
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 309 GMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 88999998875 566999999999999999999988876 899999999888877776555444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=110.48 Aligned_cols=162 Identities=13% Similarity=0.053 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.......|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+.+..+++...+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344556777777777543 5667777888899999999999999999999999888888877766542
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCA 546 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~ 546 (607)
...+.......+.+ .+.....+....++.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+++.+.+
T Consensus 77 -~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 77 -QTIDQLIYMRFLHG-LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred -ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 11222222222222 2222334555688899999999999999999999999999999999999988999899888888
Q ss_pred HHHHHHHhhhcccCCC
Q psy10231 547 CLLAMVFIQAFLPETQ 562 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (607)
+++..++..+..||++
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 155 AILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHhCCccC
Confidence 8777776666667654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-09 Score=109.42 Aligned_cols=159 Identities=11% Similarity=0.039 Sum_probs=113.7
Q ss_pred hhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhccc-CCchhHHHhhHHHHHHHHHHhhhhhhh
Q psy10231 383 EASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQMF-SRRALATTSAFFMALSMGISGTYEYYF 459 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~l~~~~~~~~~~~~~~~~~~~~~ 459 (607)
....++.+..++|.++.+ .|++.. +............++.+++|+++||+ |||+.+..+.++..++.++++..
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---- 96 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----
Confidence 444578888899999865 477544 45566667777788999999999998 99999999988888887655431
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc--chhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhH
Q psy10231 460 SELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS--VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMG 537 (607)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~ 537 (607)
. ...............+.+ ...+...++++|.+|++ .|.++.++.++..++|+.++|.+.+.+.+..||+
T Consensus 97 ------~-~~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 97 ------E-IHPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred ------h-cchhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 0 111112222222222222 22344558899999986 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10231 538 GMMWAFSCACLLAMVF 553 (607)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (607)
..|...++..+++.+.
T Consensus 169 ~~F~iaaigm~l~li~ 184 (493)
T PRK15462 169 MGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888766555544444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=113.19 Aligned_cols=162 Identities=11% Similarity=-0.037 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 390 VLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+....|.+. +.|.+.+ .+.......++..++.++.|++.||+|||+.+..+.++.+++.+..+... . ..
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~------~~ 115 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP---W------AT 115 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc---c------cc
Confidence 344455554 4476544 46677788888999999999999999999998888777777766554321 0 01
Q ss_pred CChH-HHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH-hhhhHHHHHHHHHH
Q psy10231 469 LNWI-PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY-LLNMGGMMWAFSCA 546 (607)
Q Consensus 469 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~-~~g~~~~~~~~~~~ 546 (607)
.... ......+.+.+.+. ..+.....+.|.+|++.|++++|+.++...+++.+++.+.+...+ ..+|+..|++.+.+
T Consensus 116 ~~~~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~ 194 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAIC 194 (438)
T ss_pred chHHHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1122 22222222222222 234445777899999999999999999999999999888776554 46899999988888
Q ss_pred HHHHHHHhhhcccCCC
Q psy10231 547 CLLAMVFIQAFLPETQ 562 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (607)
+++..++.+++.||++
T Consensus 195 ~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 195 AIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHHhccCCH
Confidence 8877766666667653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=104.23 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=82.2
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R 122 (607)
-++.+-.+.+ +.+.++.|++.+....+...++...+.|.++||+|||+.-++.+++++++++ +-.++|++.++++|
T Consensus 53 QGpY~Y~LY~---~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR 128 (354)
T PF05631_consen 53 QGPYLYALYE---SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR 128 (354)
T ss_pred hcchhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence 3444444444 8899999999999999999999999999999999999999999999999885 55679999999999
Q ss_pred HHHhhhhhhHhh-h-HhHHhhc
Q psy10231 123 FITGMAIGMSSA-C-YVYVAEI 142 (607)
Q Consensus 123 ~l~G~g~g~~~~-~-~~~i~e~ 142 (607)
++.|++....+. - .-++.|.
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888 4 4455665
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.4e-09 Score=106.78 Aligned_cols=162 Identities=14% Similarity=0.005 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+....|.+.++.+.+.. .+.....+.++..++.+..|++.||+|||+.+.........+......
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~------------ 75 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD------------ 75 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------------
Confidence 4455666777777777654 466777778888999999999999999998766544433333211111
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCA 546 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~ 546 (607)
....+..+..-.+.+.+. +..........|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+.+
T Consensus 76 ~~~~~~l~~~R~l~G~g~--~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l 153 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQ--PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAV 153 (368)
T ss_pred hccHHHHHHHHHHHHhHh--HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 011122222222222222 223334456689999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhhcccCCCC
Q psy10231 547 CLLAMVFIQAFLPETQG 563 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~~ 563 (607)
.++..++.++.+||.++
T Consensus 154 ~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 154 AAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88887777778887643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-10 Score=115.29 Aligned_cols=130 Identities=14% Similarity=0.068 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhh
Q psy10231 63 DASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAE 141 (607)
Q Consensus 63 ~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e 141 (607)
+.++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+ ..+.+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356667778888899999999999999999999999999999988888889999889999999999999988 8889999
Q ss_pred ccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHH
Q psy10231 142 ICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 142 ~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~ 192 (607)
.+++++|+++.++.+....+|..+++.+.+.+ ||+..|.+.+...++..+.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877 8999999998887776654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6e-09 Score=112.19 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
.+....+..+.............|.+.++.|.+.. .........++..++.++.|++.||+|||+.+..+.+..+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33344444444444455566667777777777543 45667777788889999999999999999999988888877777
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
..++. .+.+..... ..+.+....+..+....++.|.+|++.|+.+.++......+|..+++.+.+.+
T Consensus 101 ~~~~~------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 101 ACGFA------------PGYWTLFIA-RLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHH------------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66652 112222222 22223333334455668889999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHH
Q psy10231 531 MYLLNMGGMMWAF 543 (607)
Q Consensus 531 ~~~~g~~~~~~~~ 543 (607)
.+..+|+..|++.
T Consensus 168 ~~~~~w~~~f~~~ 180 (496)
T PRK03893 168 VPVWGWRALFFIG 180 (496)
T ss_pred hccCCHHHHHHHH
Confidence 9989999877654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-08 Score=105.41 Aligned_cols=151 Identities=8% Similarity=-0.064 Sum_probs=107.8
Q ss_pred HHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChH
Q psy10231 394 AVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWI 472 (607)
Q Consensus 394 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (607)
.|.+.++.+.+.. ......+..++..++.++.|+++||+|||+.+..+..+..++.+..... ...+.
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~ 96 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ESAAQ 96 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------cCHHH
Confidence 3444566676543 5667777888889999999999999999999988877777666655441 12222
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy10231 473 PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMV 552 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~ 552 (607)
.+....+.+.+.. ...+....+..|.+|++.++...+..+....++..++|.+.+.+.+..+|+..+++.+.+.++..+
T Consensus 97 l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~ 175 (401)
T PRK11043 97 LLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLIL 175 (401)
T ss_pred HHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 2222222222211 222334467889999998999999999889999999999999999999999888888877777666
Q ss_pred Hhhhc
Q psy10231 553 FIQAF 557 (607)
Q Consensus 553 ~~~~~ 557 (607)
...+.
T Consensus 176 ~~~~~ 180 (401)
T PRK11043 176 PTLRL 180 (401)
T ss_pred HHHHc
Confidence 55444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-08 Score=105.24 Aligned_cols=170 Identities=5% Similarity=-0.114 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
....+.+.++........+....|.+.++.+.+.. .........++..++.++.|++.||+|||+.+..+....+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333344443333345666677888777777654 45666777888899999999999999999999888887777776
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
+..+. +..+..+....+.+.+.+. ..+....++.|.+|++.|+.+.+..+....+++.++|.+.+.+
T Consensus 88 l~~~~------------~~~~~~~~~~~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 88 GLMFS------------HSLALFSIAMFVLGVVSGI-TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHc------------chHHHHHHHHHHHHHhhHh-hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66541 1122222222232332222 2344557888999999999999998888889999999888877
Q ss_pred HH-hhhhHHHHHHHHHHHHHHHHHh
Q psy10231 531 MY-LLNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 531 ~~-~~g~~~~~~~~~~~~~~~~~~~ 554 (607)
.+ ..+|+..|...+.+.++..++.
T Consensus 155 ~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 155 LARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHH
Confidence 65 4689988888777766655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.5e-10 Score=115.56 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=129.6
Q ss_pred cccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHH
Q psy10231 45 ILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFI 124 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l 124 (607)
...|.+.+. .+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++.++.++.+.+.++.++
T Consensus 244 ~~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 244 VLYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HhhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 344555441 388899999999999999999999999999999888888888888888888888888988888899999
Q ss_pred HhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHH-HHHhcCCC
Q psy10231 125 TGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGF-AAMHAVPE 198 (607)
Q Consensus 125 ~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~-~~~~~~pe 198 (607)
.|++.+...+ ..+++.|..|+++||++.+++.....+|..+|+.+.+.+ |++..+++.+...++.. +..+.+||
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998888 889999999999999999999999999999999988877 67777777666655544 33466677
Q ss_pred Chh
Q psy10231 199 TPS 201 (607)
Q Consensus 199 s~~ 201 (607)
.++
T Consensus 402 ~~~ 404 (417)
T PRK10489 402 LRR 404 (417)
T ss_pred ccc
Confidence 654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-09 Score=109.32 Aligned_cols=162 Identities=7% Similarity=-0.043 Sum_probs=118.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH---hCCCc-chHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHh
Q psy10231 379 FLFQEASGMYIVLYYAVNFFED---AGSSL-DDYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISG 453 (607)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~ 453 (607)
..+.+..+++....++|.++++ .|.+. +++.......+...++.+++|+++|| +|||+.+..+..+.+++.++++
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3334445577888889999875 46644 35677788888899999999999999 8999999999998888887776
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc---hhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 454 TYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV---RGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
+. ...+.......+ .........+...++.+|.+|++. |+.+.++.+...++|..+++.+.+.+
T Consensus 98 ~~------------~~~~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 98 MS------------IYPDLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred hc------------ccHhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 51 111222222222 222222234556678889998754 88899999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q psy10231 531 MYLLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 531 ~~~~g~~~~~~~~~~~~~~~~~~ 553 (607)
.++.||+..|...+..++++.+.
T Consensus 165 ~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 165 AENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHhcChHHHHHHHHHHHHHHHHH
Confidence 99889998888877655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-09 Score=106.05 Aligned_cols=167 Identities=19% Similarity=0.066 Sum_probs=112.9
Q ss_pred hhhhhHHHHHHHHHH-HHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhh
Q psy10231 382 QEASGMYIVLYYAVN-FFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYF 459 (607)
Q Consensus 382 ~~~~~~~~~~~~~~~-~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~ 459 (607)
..+...+....+.|. +.++.|.+.. .+.......++..++.++.|+++||+|||+.+..+.++..++.+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~--- 88 (366)
T TIGR00886 12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV--- 88 (366)
T ss_pred HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---
Confidence 334445667777785 4456677554 46677788889999999999999999999999999888888877665521
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh------
Q psy10231 460 SELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL------ 533 (607)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~------ 533 (607)
...+..+....+.+.+ . +..+....++.|.+|++.|+.+.++.....++|..+++.+.+.+...
T Consensus 89 --------~~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 158 (366)
T TIGR00886 89 --------QSYSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAG 158 (366)
T ss_pred --------hhHHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 0222222222222222 2 22344557889999999999999999988888888888877766653
Q ss_pred ----hhhHHHH-HHHHHHHHHHHHHhhhcccCC
Q psy10231 534 ----LNMGGMM-WAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 534 ----~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.+|++.+ ...+.+..+..++.....+|+
T Consensus 159 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 159 LPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3677777 333444444444444444554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-09 Score=91.23 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhh
Q psy10231 414 VAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPW 493 (607)
Q Consensus 414 ~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (607)
..++.+++.++.+++.||+|||+.+..+.....++.+..... ...+.......+.+... ....+...
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~-~~~~~~~~ 73 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGA-AFALVAGA 73 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 456778889999999999999999888877777666555431 12222233233333222 23345666
Q ss_pred hhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 494 VMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 494 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
.+..|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+++.+...++..+...+..||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 88899999999999999999999999999999999999888888888888888777777766665653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-08 Score=101.00 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=126.7
Q ss_pred ccccccCCCcccccCccchh-HHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHH
Q psy10231 46 LIPQLQKPSSIISISSDDAS-WIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFI 124 (607)
Q Consensus 46 ~~p~l~~~~~~~~~s~~~~~-~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l 124 (607)
+.|.+.+. +.|+++.|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-+..++
T Consensus 26 l~~yL~~~--~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~ 103 (412)
T PF01770_consen 26 LTPYLTGP--DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF 103 (412)
T ss_pred chHHHcCC--ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 33444442 3688887764 55566677788889999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHhhhHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh------hHHHHHHHhHHHHHHHHHHHhcCCC
Q psy10231 125 TGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV------TWQYTSAACAVVALVGFAAMHAVPE 198 (607)
Q Consensus 125 ~G~g~g~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l------~Wr~~f~~~~~~~~~~~~~~~~~pe 198 (607)
.|++.+....-.+|+-...++++-.++.+......-+|..++.++|..+ +++...++......++++..+++|.
T Consensus 104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999777888888888999888999999999999999999998877 6777777766666666666677776
Q ss_pred Chh
Q psy10231 199 TPS 201 (607)
Q Consensus 199 s~~ 201 (607)
.++
T Consensus 184 ~~~ 186 (412)
T PF01770_consen 184 PKR 186 (412)
T ss_pred CCc
Confidence 654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-09 Score=110.20 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+.+..+.+.+.++.|.+.. .........+...++.++.|+++||+|||+.++.+..+..++.+..++.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------
Confidence 4456667777777777543 4556666666778888999999999999999998887777776665542
Q ss_pred CCCChHHHHHH-HHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHH
Q psy10231 467 RPLNWIPLACI-LANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSC 545 (607)
Q Consensus 467 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~ 545 (607)
...+..+... .+.+.+.+.. .+....++.+.+| +.|+.+.|+.+....++..+++.+.+.+.+..||+..|++.++
T Consensus 105 -~~~~~l~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~ 181 (455)
T TIGR00892 105 -SNVIELYLTAGFITGLGLAFN-FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG 181 (455)
T ss_pred -hhHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1112222111 1212222222 2334466778886 6899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhccc
Q psy10231 546 ACLLAMVFIQAFLP 559 (607)
Q Consensus 546 ~~~~~~~~~~~~~~ 559 (607)
+.++..+..++..+
T Consensus 182 ~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 182 LLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHHhCC
Confidence 87766555444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-08 Score=106.57 Aligned_cols=146 Identities=13% Similarity=0.000 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCC--ChHHHHHHHHHHHHHH
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPL--NWIPLACILANVCASM 485 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 485 (607)
+.......++.+++.++.+++.||+|||+.+..+.++..++.++.+.... .... .+..+..-++.+. ..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~r~l~G~-~~ 129 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--------SSPKSVMATLCFWRFWLGV-GI 129 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--------cccchHHHHHHHHHHHHHH-HH
Confidence 45677778889999999999999999999998888888777766554210 0000 1222222233232 23
Q ss_pred hccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH-----------------------hhhhHHHHHH
Q psy10231 486 LGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY-----------------------LLNMGGMMWA 542 (607)
Q Consensus 486 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~-----------------------~~g~~~~~~~ 542 (607)
.+..+....+..|.+|++.|+.+.++.+....+|..+++.+...+.. ..+|+..+.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 33346667999999999999999999999999999888877665432 1368877765
Q ss_pred HHHHHHHHHHHhhhcccCCCC
Q psy10231 543 FSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.+..+++.. +..+++||+.+
T Consensus 210 ~~ip~~i~~-~~~~~lpESpr 229 (502)
T TIGR00887 210 GAVPALLAL-YFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHH-HHHHhCCCCHH
Confidence 555554443 33466799744
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-09 Score=107.54 Aligned_cols=166 Identities=8% Similarity=-0.106 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC
Q psy10231 386 GMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM 464 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+.+....+.+.++++.|.+. +.+.......+...++.++.|++.||+|||+.+..+..+..++.+........
T Consensus 28 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~------ 101 (402)
T TIGR00897 28 GDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG------ 101 (402)
T ss_pred hhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 34445567777777777754 45677788889999999999999999999999998888777765543221000
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHH-HHHhhhcHHHHHhhhhHHHHHHH
Q psy10231 465 DDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFI-FTTVKMYPDLMYLLNMGGMMWAF 543 (607)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~i~~~i~~~l~~~~g~~~~~~~~ 543 (607)
....+..+....+.+.+.. ...+.....+.+.+|+++|+++.|+.++...+|. ..++.+.+.+.+..|+...++..
T Consensus 102 --~~~~~~l~~~~~i~G~g~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 102 --HANYPLILLFYGIRGLGYP-LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred --CccHHHHHHHHHHHHcchH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 0112222222222222221 1223334567788899999999999999999886 57888888888877765555544
Q ss_pred HHHHHHHHHHhhhcccC
Q psy10231 544 SCACLLAMVFIQAFLPE 560 (607)
Q Consensus 544 ~~~~~~~~~~~~~~~~~ 560 (607)
.....+..++..++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 179 LAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 44434444444444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=110.64 Aligned_cols=145 Identities=14% Similarity=-0.024 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHh
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASML 486 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (607)
.+.......++..++.++.|++.||+|||+.+..+..+..++.++..... .....+..++.-.+.+.+. .
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~-~ 142 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---------FALSVEMLIVGRVLLGIGV-G 142 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------cccchHHHHHHHHHHHhhh-h
Confidence 46677788889999999999999999999999988888777776664421 0111123333333333322 2
Q ss_pred ccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc---HHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 487 GMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY---PDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 487 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~---~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
...+....++.|.+|++.|+.+.++.+....+|..+++.+. +...+..+|+..|++.+...++.. +..+++||+.
T Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~ 220 (481)
T TIGR00879 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESP 220 (481)
T ss_pred HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence 33455668899999999999999999999999999999888 555567789988888555554443 3445567763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=112.86 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=118.6
Q ss_pred cccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHH
Q psy10231 45 ILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFI 124 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l 124 (607)
..+|...+ +.+.+.++.+++.+...++..+++++.|++.||+|||+++..+..+..++.+... +.......+++
T Consensus 221 ~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l 294 (381)
T PRK03633 221 GLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFI 294 (381)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Confidence 34566555 5688888999999999999999999999999999999999888888777665443 23344567888
Q ss_pred HhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHh
Q psy10231 125 TGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMH 194 (607)
Q Consensus 125 ~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~ 194 (607)
.|++.....| ..+.+.|..|+++++...+......++|..+||.+++.+ +|++.|.+.+...++..+..+
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 8988888889 999999999998888888888888999999999999887 899999998888877665443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-08 Score=99.45 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=113.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 373 FILIGFFLFQEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
+....+.+...+...+......+.+-+ +.+++.+ ......+..+...+..+..|++.||+|.|+++..+..+..+..+
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 333334444443334444444444444 4566543 45566777788888889999999999999999988888877776
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
..++.... ..++.+..++.-.+.+.+ .+..+.....+++.+|++.||++.|+....+++|..+++.+.+.+
T Consensus 116 ~~~~a~~~-------~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 116 WLGIAVQN-------PNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHcc-------cCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66542100 001222223322222222 224455668889999999999999999888888887776666654
Q ss_pred H-----H-------------hhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 531 M-----Y-------------LLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 531 ~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
. . ..+++.+.+++..+.++..++.+++.++.
T Consensus 187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4 2 33456666677777777777766665554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=111.16 Aligned_cols=163 Identities=10% Similarity=-0.163 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 390 VLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+....|.+.++.+.+.. .+.....+.++..++.++.|+++||+|||+.+..+.+..++..+.++....... .
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------~ 120 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS-------V 120 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc-------c
Confidence 34446777777777544 466777788888999999999999999999998887777776666554221110 1
Q ss_pred CChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh---hhHHHHHHHHH
Q psy10231 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL---NMGGMMWAFSC 545 (607)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~---g~~~~~~~~~~ 545 (607)
..+..+..-.+.+.+.+ ...+....++.|.+|++.|+.++|+......+|..+++.+...+.+.. +|...|.+.+.
T Consensus 121 ~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~ 199 (467)
T PRK09556 121 SLGLMIALWALSGFFQS-TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI 199 (467)
T ss_pred hHHHHHHHHHHHHHHHh-ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 22223333333333323 334666689999999999999999999999999999988876665543 46666766666
Q ss_pred HHHHHHHHhhhcccC
Q psy10231 546 ACLLAMVFIQAFLPE 560 (607)
Q Consensus 546 ~~~~~~~~~~~~~~~ 560 (607)
+.++.+++.+++.++
T Consensus 200 ~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 200 IALIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHHHHhCCC
Confidence 666655555555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=111.45 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=123.7
Q ss_pred ccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHH
Q psy10231 46 LIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFIT 125 (607)
Q Consensus 46 ~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~ 125 (607)
..|...+ |+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.+...+..++.++++|.+.+++.+++.
T Consensus 227 ~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 227 FSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 4454445 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhh-hHhHHhhccCCCccccccchhh-HHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 126 GMAIGMSSA-CYVYVAEICLPNDRGYLSAFGP-VFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 126 G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
|+..+...+ ...++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.+.++++..+
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999999 99999998 9999999999886 57788999999998888 64 556666666665544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=105.25 Aligned_cols=154 Identities=16% Similarity=0.016 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHh
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASML 486 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (607)
.........++.+++.++.|+++||+|||+.+..+..+..++.+..++........ ..++......+...-.+.+....
T Consensus 57 ~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~R~l~G~~~g 135 (479)
T PRK10077 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI-GPDNTGYVPEFVIYRIIGGIGVG 135 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhHHHHHHHHHHHHhhhHh
Confidence 45677788889999999999999999999999999888877766555411100000 00001111222222233333333
Q ss_pred ccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH--------HhhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 487 GMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM--------YLLNMGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 487 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
+..+...+++.|.+|++.|+.++++......+|..+++.+.+.+. +..+|+..|++.+...++..+. .+++
T Consensus 136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l 214 (479)
T PRK10077 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFV 214 (479)
T ss_pred HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcC
Confidence 445666789999999999999999999888888888766544332 3468998888877766665544 5567
Q ss_pred cCCC
Q psy10231 559 PETQ 562 (607)
Q Consensus 559 ~~~~ 562 (607)
||+.
T Consensus 215 ~~s~ 218 (479)
T PRK10077 215 PETP 218 (479)
T ss_pred CCCc
Confidence 8864
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-10 Score=111.07 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=125.1
Q ss_pred hCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHH
Q psy10231 401 AGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILA 479 (607)
Q Consensus 401 ~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (607)
.+.+. ..+++...+.+..++++++.|++.||+.|++++..|..+-.++.+..++.. ....+...=.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-------------~Fwq~~l~R~ 129 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-------------HFWQVLLCRG 129 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 34433 357788888899999999999999999999999999998888888877742 2223333344
Q ss_pred HHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 480 NVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
+.+..-....|+...+++|.+|..+|+++.++.+.....|..+|-.+...+.+..+ |+++|...+++.++..++..++.
T Consensus 130 ~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 130 FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 44455566778888999999999999999999999999999998888877777766 89999999999999999988888
Q ss_pred cCCCCCCHHH
Q psy10231 559 PETQGKTLLE 568 (607)
Q Consensus 559 ~~~~~~~~~~ 568 (607)
+|..++..++
T Consensus 210 ~eP~rga~~~ 219 (493)
T KOG1330|consen 210 REPERGARDE 219 (493)
T ss_pred cCcccccccc
Confidence 8887664443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=105.97 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHH
Q psy10231 370 KPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMA 446 (607)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~ 446 (607)
+.+...+... +..-.+++....+++.|+++ .|.+.. .......+.....+..+++|+++|| +|||+.+..+.++..
T Consensus 14 ~~~~~~~~~~-~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVE-LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 3344433333 33445577788888888764 566544 4445555555666677899999999 999999999999999
Q ss_pred HHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc--hhhHHHHHHHHHHHHHHHHh
Q psy10231 447 LSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV--RGIMGGIVCSLGYLFIFTTV 524 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~i~~ 524 (607)
++.+.+++.. .. ...+...............|...+++.|.+|++. |+.+.++.+...++|..++|
T Consensus 93 ~g~~~~~~~~-----------~~-~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 93 IGYFMTGMSL-----------LK-PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHHhc-----------cc-hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 9887776521 11 1112122222223333344566689999998874 47789999999999999999
Q ss_pred hhcHHHHHhhhhHHHHHHHHHH
Q psy10231 525 KMYPDLMYLLNMGGMMWAFSCA 546 (607)
Q Consensus 525 ~i~~~l~~~~g~~~~~~~~~~~ 546 (607)
.+.|.+.++.||+..|++.++.
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHHH
Confidence 9999999999999888875443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=109.51 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=111.5
Q ss_pred ccccccc-CCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH--HHHHh--ccchhHHH
Q psy10231 45 ILIPQLQ-KPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW--TIITV--SKGFTLLC 119 (607)
Q Consensus 45 ~~~p~l~-~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~--~~~a~--a~~~~~l~ 119 (607)
...|.+. + +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.++
T Consensus 240 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
T TIGR00883 240 TYLPTYLTQ---TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFF 316 (394)
T ss_pred HHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445544 4 678899999999999999999999999999999999998876555444333 22222 25677778
Q ss_pred HHHHHHhhhhhhHhh-hHhHHhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh----h-HHHHHHHhHHHHHH
Q psy10231 120 VGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV----T-WQYTSAACAVVALV 188 (607)
Q Consensus 120 ~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l----~-Wr~~f~~~~~~~~~ 188 (607)
...++.|++.+...+ ..+++.|.+|+++|+++.++ ...+..+|..++|.+++.+ + |++.++..+...++
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l~ 392 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALI 392 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 889999999999999 99999999999999999998 4566778888888888877 5 88887776665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.4e-08 Score=102.40 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=104.6
Q ss_pred hhhhhHHHHHHHHHHHHH-HhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhhhhhh
Q psy10231 382 QEASGMYIVLYYAVNFFE-DAGSSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGTYEYY 458 (607)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~~~~~ 458 (607)
....+++....+.+.+++ +.|.+.. +...............+++|++.|| +|||+.+..+..+..++..++++..
T Consensus 32 ~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-- 109 (500)
T PRK09584 32 WERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344456778888888884 4576543 3333333333444445689999999 5999999999888888776665410
Q ss_pred hccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc--hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhh
Q psy10231 459 FSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV--RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNM 536 (607)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~ 536 (607)
+..+.......+.+.+. ....+...++..|.+|++. |..+.++.+...++|..++|.+.+++.+..||
T Consensus 110 ---------~~~~~l~~~~~l~gig~-g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 110 ---------HDAGIVYMGMATIAVGN-GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred ---------ccHHHHHHHHHHHHHhh-hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 11112222222222222 2234555578899998653 45678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10231 537 GGMMWAFSCACLLA 550 (607)
Q Consensus 537 ~~~~~~~~~~~~~~ 550 (607)
+..|.+.++...++
T Consensus 180 ~~~F~i~~i~~~i~ 193 (500)
T PRK09584 180 SVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888876544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=107.95 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=110.3
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh---c-cchhHHHHHHHHHhhhhhh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV---S-KGFTLLCVGRFITGMAIGM 131 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~---a-~~~~~l~~~R~l~G~g~g~ 131 (607)
++|.++.....+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|++.+.
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 67777776666666666777888899999999999999998887766555443322 2 2344555567777899888
Q ss_pred Hhh-hHhHHhhccCCCccccccchh-hHHHHHHHHHHHHHhhhh------hHHHHHHHhHHHHHHHHHHHhcCCCCh
Q psy10231 132 SSA-CYVYVAEICLPNDRGYLSAFG-PVFVSLGVLIVYSLGYIV------TWQYTSAACAVVALVGFAAMHAVPETP 200 (607)
Q Consensus 132 ~~~-~~~~i~e~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l------~Wr~~f~~~~~~~~~~~~~~~~~pes~ 200 (607)
..+ ..+++.|.+|.+.|+...++. ..+..+|..++|.+.+.+ +|+..+...++..++..+..+.+||+.
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 888 899999999999998888884 445568888888888776 488888888888887777766677754
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=102.26 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC
Q psy10231 387 MYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD 465 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
...+.+++--.+++.+.... -+........+.++..++.++++.|+|+-+++..++...++-++.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 44445555445566553222 3455566667788889999999999999999999888888877766553
Q ss_pred CCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHH-HHHHHHHhhhcHHHHHhhhhHHHHHHHH
Q psy10231 466 DRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLG-YLFIFTTVKMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~i~~~i~~~l~~~~g~~~~~~~~~ 544 (607)
.+.|.++..=++-+......+..+ .+|+..+.|++.|+++.++..... .+|-.+|+++.|.+.+.++-...|.+++
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 344555554455555555555444 489999999999999999987665 4788889999999999999998999988
Q ss_pred HHHHHHHHHhh
Q psy10231 545 CACLLAMVFIQ 555 (607)
Q Consensus 545 ~~~~~~~~~~~ 555 (607)
+.+++..++..
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 88877666544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-08 Score=101.73 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 390 VLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
.....+...++.+.+.. .......+.+...+..++.|++.||+|||+++..+..+.+++.+.+...
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~------------- 88 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG------------- 88 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------------
Confidence 33444445556555443 4666777788889999999999999999999999988877766554331
Q ss_pred CChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHH
Q psy10231 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACL 548 (607)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~ 548 (607)
... +..- ...+.......|...+++.|.+|+++|+++.|+......++..++|.+.|.+.+.. +...+.+.+...+
T Consensus 89 ~~~--~~~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~ 164 (393)
T PRK11195 89 IHP--LLAY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYL 164 (393)
T ss_pred HHH--HHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 111 1111 22333344456777799999999999999999999999999999999999988854 5545555444433
Q ss_pred HHHHHhhhcccCCC
Q psy10231 549 LAMVFIQAFLPETQ 562 (607)
Q Consensus 549 ~~~~~~~~~~~~~~ 562 (607)
++ .+..+.+||.+
T Consensus 165 ~~-~~~~~~l~~~~ 177 (393)
T PRK11195 165 LA-ALFNLFIPRLG 177 (393)
T ss_pred HH-HHHHhcCCCCc
Confidence 33 33345667653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=99.99 Aligned_cols=166 Identities=11% Similarity=-0.047 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC
Q psy10231 386 GMYIVLYYAVNFFEDAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM 464 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
..+.+..+.+.+.++.|.+... ...... +.......++.|++.||+|+|+++.++.++..++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~----- 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV----- 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 3567778888887777876543 333222 222334566789999999999999999999999988777631100
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHH
Q psy10231 465 DDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~ 544 (607)
-..+.+...+...+.+.+. ....+.....+.+.|| +.||.+.|+......+|+.+.+.+...+.. .++...+++.+
T Consensus 116 -i~~s~~~l~l~r~l~G~G~-~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~ 191 (591)
T PTZ00207 116 -IEGSVVRLSVYNGLMTLGC-MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLM 191 (591)
T ss_pred -ccCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 0012222222222222222 2223334466778887 679999999999999999876655555544 35666777888
Q ss_pred HHHHHHHHHhhhcccCC
Q psy10231 545 CACLLAMVFIQAFLPET 561 (607)
Q Consensus 545 ~~~~~~~~~~~~~~~~~ 561 (607)
.+.++.+++...++++.
T Consensus 192 vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 192 SFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHhheeCC
Confidence 87777777666665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=103.96 Aligned_cols=155 Identities=15% Similarity=0.041 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCCh
Q psy10231 392 YYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471 (607)
Q Consensus 392 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (607)
.-.+.+.++.|.+.+..+......+...++.++.|+++|.+|||..++.+.++..++.++.+.. .+..
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~~~ 132 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QNMN 132 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------CcHH
Confidence 3345566677776667777777888899999999999999999999999999999999887652 1222
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHH
Q psy10231 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAM 551 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 551 (607)
..+....+.+.+ .+........++|..|.+.|..+.++.....-.....++.+...+..+.+|++.|++.+....++.
T Consensus 133 ~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 223333333332 333344456689999999998887766654444444556665555556789999998888777766
Q ss_pred HHhhh-cccC
Q psy10231 552 VFIQA-FLPE 560 (607)
Q Consensus 552 ~~~~~-~~~~ 560 (607)
+...+ +.|.
T Consensus 211 vl~~~fY~PP 220 (599)
T PF06609_consen 211 VLIFFFYFPP 220 (599)
T ss_pred HHHHHHhCCC
Confidence 55443 4443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-08 Score=95.92 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=122.3
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhcc
Q psy10231 383 EASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSE 461 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (607)
.++..+.+....+.+-++.+++.+ ..+...+..+.+.+.++..|.+.||+|.|++...+.++..+-.+.+++....
T Consensus 26 ~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~--- 102 (417)
T COG2223 26 GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY--- 102 (417)
T ss_pred HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC---
Confidence 333334444444444455666544 4667777888899999999999999999999999999888888777764221
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh---hHH
Q psy10231 462 LSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN---MGG 538 (607)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g---~~~ 538 (607)
...+..+.+... .+.+.+.......++++.||++.+|.+.|+.. .+|+|..+...+.+.+....+ |+.
T Consensus 103 ------~~~~~ll~~gll--~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 103 ------PSTWQLLVIGLL--LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred ------CchHHHHHHHHH--HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 222333332222 22333445666688999999999999999999 999999999999999999998 888
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q psy10231 539 MMWAFSCACLLAMVFIQAFLPE 560 (607)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~ 560 (607)
...++....++..+..++...+
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888877777776544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=108.94 Aligned_cols=143 Identities=8% Similarity=-0.125 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
+.....+.++..++.++.|++.||+|||+.+..+.++..++.++..+.. ......++..-++.+.....
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~~~G~~~~~ 147 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFCRVIQGLAQGS 147 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHHHHHHHHhccc
Confidence 5566777788999999999999999999999888877766665543311 11112222222333333444
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL-LNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
..+....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+. .+|+..|++.++..++..++.+.+.+|.
T Consensus 148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 5566778999999999999999999999999999999999999888 4999999988887777666655554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-07 Score=97.83 Aligned_cols=149 Identities=14% Similarity=-0.004 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.......|.+.++.+.+.+ .+.......++..++.++.|++.||+|||+++..+..+.+++.+..++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 4456667888777787554 4677777888889999999999999999999999999999999888762
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh-hhHHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL-NMGGMMWAFSC 545 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~-g~~~~~~~~~~ 545 (607)
++.+..+..-.+.+.+.+ ...+....++.+.+| +.|+.++|+.......|..+++.+.+.+.++. +|+..+..++.
T Consensus 95 -~~~~~ll~~r~l~Gig~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~ 171 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIG-IIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL 171 (393)
T ss_pred -cchHHHHHHHHHHHhHHH-HHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122222222222223322 333445577888887 67999999999999999999999998888775 78877666555
Q ss_pred HHHHH
Q psy10231 546 ACLLA 550 (607)
Q Consensus 546 ~~~~~ 550 (607)
..++.
T Consensus 172 ~~~~~ 176 (393)
T PRK09705 172 PAVVA 176 (393)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-07 Score=98.06 Aligned_cols=178 Identities=10% Similarity=-0.112 Sum_probs=104.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhC---CCcc-h---HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 378 FFLFQEASGMYIVLYYAVNFFEDAG---SSLD-D---YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~-~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
+..+........+....|.+.++.+ .+.. . ........++..++.++.|++.||+|||+.+..+.....++.+
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3333444444555555666655543 2211 1 1223333455568999999999999999999999998888887
Q ss_pred HHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHH
Q psy10231 451 ISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDL 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l 530 (607)
..++....... .......+...-...+....+..+...+++.|.+|++.|+.+.++.......|..+++.+...+
T Consensus 109 ~~~~~~~~~~~-----~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 109 VIACLPGYETI-----GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHhhcCCchhH-----HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76652100000 0000011222222222222334566778999999999999999988777767766666554433
Q ss_pred H--------HhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 531 M--------YLLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 531 ~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
. ...||+.+|++.++..++... .....||+
T Consensus 184 ~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~ 221 (432)
T PRK10406 184 QQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDET 221 (432)
T ss_pred HHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 2 256899899876666655432 23344554
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=98.94 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHh-CCCc-----chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhc
Q psy10231 387 MYIVLYYAVNFFEDA-GSSL-----DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFS 460 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~-g~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.+.+.++...-++.. +.+. -++.....+++..++.++..|.++||+|||+++..+.+..++...+.+.
T Consensus 44 L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------ 117 (451)
T KOG2615|consen 44 LYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------ 117 (451)
T ss_pred hhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------
Confidence 455555555555543 3322 2466788889999999999999999999999999999988888877766
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH---hhhhH
Q psy10231 461 ELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY---LLNMG 537 (607)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~---~~g~~ 537 (607)
..+...++.. =+..+..-+...+.-++++|+++++.|+.+++.++....+|.++||.+.|++.. ..|.+
T Consensus 118 -------S~~F~afv~a-R~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~ 189 (451)
T KOG2615|consen 118 -------SRNFAAFVLA-RFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSY 189 (451)
T ss_pred -------HHHHHHHHHH-HHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccC
Confidence 2222222221 122233334455666999999999999999999999999999999999999887 33322
Q ss_pred HHH---HHHHHHHHHHHHHhhhcccCCCC
Q psy10231 538 GMM---WAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 538 ~~~---~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
..+ ++..+.+.....+..+++|||-.
T Consensus 190 p~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 190 PFALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 211 22222222223344567899843
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=108.09 Aligned_cols=155 Identities=14% Similarity=0.120 Sum_probs=132.2
Q ss_pred ccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccch
Q psy10231 36 NNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGF 115 (607)
Q Consensus 36 ~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~ 115 (607)
+++..+....++|.+.+ +++|.++...|++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.
T Consensus 230 ~~l~~~a~~aLlPl~a~--~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 230 FNLFASAVWALLPLFAR--DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred HHHhhhHHHHhhhHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence 34433334456777765 2689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~ 190 (607)
+..++.-++.|++.....+ ..+.+.+..|++.|||+++++......+..+|..+.+.+ |-+..+.+.++..++..
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 899999999999999999999888888888887777776 77888877776555544
Q ss_pred HH
Q psy10231 191 AA 192 (607)
Q Consensus 191 ~~ 192 (607)
++
T Consensus 388 ~~ 389 (524)
T PF05977_consen 388 LI 389 (524)
T ss_pred HH
Confidence 43
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=107.70 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccch--hHHHHHHHHHhhhhhhHhh-hHhHHhhc
Q psy10231 66 WIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGF--TLLCVGRFITGMAIGMSSA-CYVYVAEI 142 (607)
Q Consensus 66 ~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~--~~l~~~R~l~G~g~g~~~~-~~~~i~e~ 142 (607)
+......+....+.++.+++.||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+...+ ...+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777889999999999999999999999999988888887654 5556667788888888888 99999999
Q ss_pred cCCCccccccchhhHHHHHHHHHHHHHhhhh--hHHHHHHHhHHHHHHHHHHHhcCCCCh
Q psy10231 143 CLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV--TWQYTSAACAVVALVGFAAMHAVPETP 200 (607)
Q Consensus 143 ~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l--~Wr~~f~~~~~~~~~~~~~~~~~pes~ 200 (607)
+|++.|+.++++......+|.+++|.+.+.. ++...+++.+...++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999998832 667788888888877777778889875
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=99.48 Aligned_cols=168 Identities=14% Similarity=-0.037 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcch--HHHHHH-----HHHHHHHHHHHHhHhhcccCCchhHHHhhHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDD--YVASII-----VAGLRFFMAIIGSACIQMFSRRALATTSAFF 444 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~ 444 (607)
......+..+........+....|.+.++.+.+... ...... ..+...++.++.|++.||+|||+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 455555666666666777888889888887764432 222111 1222346788999999999999999999988
Q ss_pred HHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHh
Q psy10231 445 MALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTV 524 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~ 524 (607)
..++.++.++....... ........++.-++.+.+ .....+....++.|.+|++.|+.+.++.....+++..+++
T Consensus 96 ~~~~~~l~~~~~~~~~~----~~~~~~~l~~~R~l~G~~-~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 96 MASGTLLIAFVPGYATI----GLAAPLLVLLGRLLQGFS-AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHhCCcHHHH----HHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 88888777652100000 000000111111121221 1222344557899999999999999999888888777776
Q ss_pred hhcHHH--------HHhhhhHHHHHHHH
Q psy10231 525 KMYPDL--------MYLLNMGGMMWAFS 544 (607)
Q Consensus 525 ~i~~~l--------~~~~g~~~~~~~~~ 544 (607)
.+.+.+ .+..||+.+|++..
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 665554 34678888887643
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-06 Score=86.51 Aligned_cols=102 Identities=12% Similarity=-0.035 Sum_probs=88.0
Q ss_pred HHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCC
Q psy10231 68 ASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPN 146 (607)
Q Consensus 68 ~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~ 146 (607)
.++.+....+++++.+.+.|+.|.|..+.++...+....+..-+ +|-+-++++-.+.|+|.+..+. --.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67788888899999999999999999999999999887766644 5677888999999999999999 999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHh
Q psy10231 147 DRGYLSAFGPVFVSLGVLIVYSLG 170 (607)
Q Consensus 147 ~r~~~~~~~~~~~~lG~~ig~~l~ 170 (607)
.+.+..++.-.....+.++|+.+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999998888777777777765443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-07 Score=95.72 Aligned_cols=176 Identities=9% Similarity=-0.048 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhc----ccCCchhHHHh-hHHHHHHHHHHhhhhhhhc
Q psy10231 387 MYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQ----MFSRRALATTS-AFFMALSMGISGTYEYYFS 460 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~l~~~-~~~~~~~~~~~~~~~~~~~ 460 (607)
+.....+.+.++++.|.+.. ......+..+.+++..++.|+++| |+|||+.++.. .....+++.++++......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 45666777778888888554 456677778899999999999999 59999988764 4555555555544211100
Q ss_pred cccC--CCCCCCh---HHHHHHHHHHHHHHhccchhhhhhhccccCccch--hhHHHHHHHHHHHHHHHHhhhcHHH--H
Q psy10231 461 ELSM--DDRPLNW---IPLACILANVCASMLGMLQLPWVMIAELFPLSVR--GIMGGIVCSLGYLFIFTTVKMYPDL--M 531 (607)
Q Consensus 461 ~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~i~~~i~~~l--~ 531 (607)
.... ......+ ..+....+......... +..-++++|..|+++| +.+.++.+...++|+.+++.+.+.. .
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0000 0001111 11222222222222222 3334899999998876 5789999999999999998887754 2
Q ss_pred Hhh-------------hhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 532 YLL-------------NMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 532 ~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+.. +.+..|++-+++.+++.++..+..+|..-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 211 45667888888888888888888888653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=96.36 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhcc
Q psy10231 409 VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGM 488 (607)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (607)
....++.+++++|++..+.+.||+|||..+..+.++..++.++..+.... ......+..=++.+...+...
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~---------~~~e~li~GR~i~Gl~~gl~~ 134 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA---------PSFEMLILGRLIVGLACGLST 134 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHhHHHH
Confidence 35666778999999999999999999999998888888877776664332 222233333333333333333
Q ss_pred chhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc-HHHHHh-hhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 489 LQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY-PDLMYL-LNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 489 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~-~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
.....+..|..|++.||....+......+|..++..+. +.+... ..|...+....+.+++..+ ...++||+.+
T Consensus 135 -~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk 209 (485)
T KOG0569|consen 135 -GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPK 209 (485)
T ss_pred -HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcc
Confidence 23337899999999999999999999888888884433 344433 2355444444444444444 4556799854
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-07 Score=95.98 Aligned_cols=163 Identities=10% Similarity=-0.113 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhccc-----CCchhH-HHhhHHHHHHHHHHhhhhhhhccc
Q psy10231 389 IVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMF-----SRRALA-TTSAFFMALSMGISGTYEYYFSEL 462 (607)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
....-.|.+.++.|.+.+.........+...+ .++.|.++||+ |||+.+ +.+.+..++....+++..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------ 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------ 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence 34455677788878765532222222333333 88999999997 888864 555556655555554321
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-------
Q psy10231 463 SMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN------- 535 (607)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g------- 535 (607)
+....+.......+ .........+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+
T Consensus 79 ---~~~~l~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 79 ---PSTDLPLLAGLAFL-IAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred ---cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 00111222222222 2233333345556889999999999999999999999999999999998888888
Q ss_pred -hHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 536 -MGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 536 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
|+..|++.++..++..+..++..||.+
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 998998888877776655554556653
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=103.74 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=113.5
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+++++.+.+++..++.|++.+...+
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred hHhHHhhccCCCccccccchhh-HHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGP-VFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
...++.+. +++++++..+... ...++|..+|+.+++.+ ++ ..|+..++++++.++
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 88888886 5666788888775 55677878888888877 55 456666666655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=96.66 Aligned_cols=157 Identities=13% Similarity=-0.012 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.......|.+.++.+.+.. .+.......++..++++..+++.||+|||+.+..+..+.+++.++......
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3444666777677777553 567778888999999999999999999999999999888888766533110
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH--------------
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY-------------- 532 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~-------------- 532 (607)
..+.+..+...++.+.+.+. ..+..+.++.+..|++.|++..++.+.+..+|..+++.+.+.+..
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~ 169 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKL 169 (410)
T ss_pred hccHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhc
Confidence 01222233333333333322 233444677788899999999999999999999999998887742
Q ss_pred ------------hhhhHHHHHHHHHHHHHHHHHh
Q psy10231 533 ------------LLNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 533 ------------~~g~~~~~~~~~~~~~~~~~~~ 554 (607)
..+|+.+|.+.+.+.++..++.
T Consensus 170 ~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 170 SPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2458888888887766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=97.56 Aligned_cols=147 Identities=14% Similarity=0.009 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHH
Q psy10231 406 DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASM 485 (607)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (607)
..++......+.+++.+++.|.+.||+|+|..++.|.+++..+.+++++ ...+..++..=...+...
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-------------g~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-------------GNSYPMLFVARSLQGVGS 173 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-------------cchhHHHHHHHHHhhhhH
Confidence 3567788888999999999999999999999999999999999999887 233334444444444444
Q ss_pred hccchhhhhhhccccCccc-hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy10231 486 LGMLQLPWVMIAELFPLSV-RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 486 ~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (607)
........+++++.||.+. |++++|+.-.+..+|..++|++.|.+.+..|...+|.+++.++++...+.++.++.++.+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 4444556689999999876 699999999999999999999999999999999999999999999998888777766554
Q ss_pred C
Q psy10231 565 T 565 (607)
Q Consensus 565 ~ 565 (607)
+
T Consensus 254 ~ 254 (464)
T KOG3764|consen 254 P 254 (464)
T ss_pred c
Confidence 4
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-07 Score=95.37 Aligned_cols=169 Identities=11% Similarity=0.045 Sum_probs=115.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHhHhhccc-----CCch-hHHHhhHHHHHHHHHHh
Q psy10231 381 FQEASGMYIVLYYAVNFFEDAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMF-----SRRA-LATTSAFFMALSMGISG 453 (607)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~l~~~~~~~~~~~~~~~ 453 (607)
+.+.........-.|.++++.|.+.+. +.... .... .+..++.|+++||+ |||+ .+..+....+++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~-~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSL-VGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA 86 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 344555667778889999988886654 33322 2222 57889999999999 7765 67777777766666554
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 454 TYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
+.. .....+.......+. ..+.....+...+++.|.+|+++|+.+.++......++..+++.+.+.+.+.
T Consensus 87 ~~~---------~~~~~~~l~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 87 FCP---------PHAALWPLAGLAVLV-AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred hcC---------ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 421 111222222222222 3333444566678999999999999999999998899999999988888885
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 534 -LNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 534 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
.||+..|++.+.+.++..+. .+..||++
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 48999998888877665544 34556654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=103.41 Aligned_cols=134 Identities=7% Similarity=0.106 Sum_probs=115.6
Q ss_pred ccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hH
Q psy10231 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CY 136 (607)
Q Consensus 58 ~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~ 136 (607)
+.+....|++.+...+...++.+..|++.||+|||+.+.++.++.+++..+.+.++|.+.+++.+++.|++.+.... ..
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788999999999999999999999999999999999999888888878889999999999999999888777 77
Q ss_pred hHHhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 137 VYVAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 137 ~~i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.++.+..+++.++...+. .+....+|..+++.+++++ ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 888888888888887766 6778899999999888877 899999998888766544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=100.80 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=133.9
Q ss_pred cccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCc--hhhhhhhhHHHHHHHHHHh--------ccc
Q psy10231 45 ILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRK--TTVQLTAIPFIIGWTIITV--------SKG 114 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr--~~l~~~~~l~~~~~~~~a~--------a~~ 114 (607)
.......+ +++.+..+...+.-...+...+|++++|++.||+|.| ++++++++++.+..+...+ .++
T Consensus 303 ~~~i~a~~---~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~ 379 (477)
T PF11700_consen 303 FAGIYATE---VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKS 379 (477)
T ss_pred HHHHHHHH---hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCccc
Confidence 33344445 8999999999999999999999999999999999999 8999999888776666666 678
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALV 188 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~ 188 (607)
-+.+.+.-++.|+..|..++ +.++.+|+.|+++.+..+|++.+..-....+||.+-+.+ +-|+.+....++.++
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~ 459 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLI 459 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 89999999999999999999 999999999999999999999999999999999988888 588888888888888
Q ss_pred HHHHHhcCCCC
Q psy10231 189 GFAAMHAVPET 199 (607)
Q Consensus 189 ~~~~~~~~pes 199 (607)
.+++++++++.
T Consensus 460 gl~ll~~v~~~ 470 (477)
T PF11700_consen 460 GLILLFFVDVE 470 (477)
T ss_pred HHHHHhhccch
Confidence 88777777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=88.06 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=122.9
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc-------cchh
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-------KGFT 116 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-------~~~~ 116 (607)
+..-|++++ .+|.|++|...+.++-.+|..+| ++.|.+.|++|+|.++.+|.+...+|..+..++ .++|
T Consensus 22 s~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 22 SAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred hhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 466788998 99999999999999999999874 899999999999999999999999988877654 4678
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.+.+..++.|.+.+.... +.....+.+| ++||.+.++.-...+++..+-..+...+ .-+..+.....+.++.++
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 888889999999888777 7777788887 5899999999999999998877776666 344555555555555555
Q ss_pred HHhcCCCCh
Q psy10231 192 AMHAVPETP 200 (607)
Q Consensus 192 ~~~~~pes~ 200 (607)
..+++.+-|
T Consensus 177 ~~~~vr~~~ 185 (250)
T PF06813_consen 177 AMFFVRPVP 185 (250)
T ss_pred HhhheeccC
Confidence 555554333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=94.59 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=131.9
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
++|+++.+..++.-...+..+.|++++|++.||+|-|+++..++++..+.++..-+...-..+.++-.+.|...|+.+.
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 8999999999999999999999999999999999999999999999999999888888888888889999999999999
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHHHhcCCCC
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAAMHAVPET 199 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~~~~~pes 199 (607)
+.+|..+..|+++-++.++++....-.++.+||.+-+.+ +-|.-+....++-.+.++.++++|+.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999888877 67887777777777777777777765
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=108.34 Aligned_cols=144 Identities=9% Similarity=-0.047 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
.+......+..++.++++|+++||+|||+++........+........... ...+. ++...+..+.+...
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~-l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---------NSVPL-LFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHH-HHHHHHHHHHHHHh
Confidence 445556677788899999999999999987543222221111111111000 12223 33333333434444
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
..|...+++.+.+|++.|+.++|+.++...++..++|.+.|.+.+..+|...|+..+.+.+ ..++..+.+|+++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 198 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV-LGWLASLFIPKTG 198 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHhhCCCCC
Confidence 5678889999999999999999999999999999999999999999898877733333333 3344445556543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=92.43 Aligned_cols=138 Identities=12% Similarity=-0.059 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccc
Q psy10231 384 ASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSEL 462 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
.........+.|.+-++.+.+.. .+.....+.++..++.++.|++.||+|||+.+..+..+..++.+++.....
T Consensus 39 ~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~----- 113 (438)
T PRK10133 39 AVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE----- 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 33456667778888667777544 567778888999999999999999999999999999988888866432110
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH
Q psy10231 463 SMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531 (607)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 531 (607)
.+..+..+....+.+.+.+. ..+..+.++.|..|++.|....++.+....+|..+++.+.+.+.
T Consensus 114 ----a~~~~~ll~~r~l~G~g~g~-~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 ----IMNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ----cCCHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222333333333333333 33444566778777776667889999999999999988766543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.9e-07 Score=94.47 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=110.9
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhHhhccc-----CCchh-HHHhhHHHHHHHHHHhhhh
Q psy10231 383 EASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMF-----SRRAL-ATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-l~~~~~~~~~~~~~~~~~~ 456 (607)
+...........|.++++.|.+.+........+.. .++.++.+.++||+ |||+. +..+.+..+++...+++..
T Consensus 24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~ 102 (491)
T PRK11010 24 SGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE 102 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566667788887777654432222222222 26789999999999 98875 5566666666655554421
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH-hhh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY-LLN 535 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~-~~g 535 (607)
+....+.......+ ...+.....+...++..|.+|+++|+.+.++......+|..+++.+.+.+.+ ..|
T Consensus 103 ---------~~~~l~~l~~~~~l-~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 103 ---------PGTQLRWLAALAVV-IAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred ---------CcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 11122222222222 2223334445566889999999999999999999999999999999988888 469
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy10231 536 MGGMMWAFSCACLLAMVFIQAFLPETQ 562 (607)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (607)
|+..|++.+.+.++..+..+ ..||+.
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 99999998887776655544 357653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=99.14 Aligned_cols=136 Identities=13% Similarity=0.011 Sum_probs=106.6
Q ss_pred ccccCccchhHHHHHHH-HHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh------ccchhHHHHHHHHHhhh
Q psy10231 56 IISISSDDASWIASLGV-ISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV------SKGFTLLCVGRFITGMA 128 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~-l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~------a~~~~~l~~~R~l~G~g 128 (607)
|.|.++++.|++..... .+..++.++.|++.||+|+|+.+..+.++.++..+.... .++...+....++.+++
T Consensus 237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
T TIGR02718 237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI 316 (390)
T ss_pred hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence 67999999999988876 466778899999999999999998877665333332221 23344555566677777
Q ss_pred hhhHhh-hHhHHhhccCC-CccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 129 IGMSSA-CYVYVAEICLP-NDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 129 ~g~~~~-~~~~i~e~~~~-~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.+...+ ..+.+.+..++ +++++..++.+...++|..+||.+++.+ ||+..|+..+++.++..+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 888888 78887788776 8899999999999999999999999877 888999888877766544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=100.25 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=98.8
Q ss_pred CccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc-cchhHHHHHHHHHhhhhhhHhh-hHh
Q psy10231 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-KGFTLLCVGRFITGMAIGMSSA-CYV 137 (607)
Q Consensus 60 s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-~~~~~l~~~R~l~G~g~g~~~~-~~~ 137 (607)
++.+.+++.+...++..++.+++++++||+|||+++..+.++..++.++..+. ++.+.+++..++.|++.+...+ ..+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888887777665 4667778888999999999999 999
Q ss_pred HHhhccC-------CCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 138 YVAEICL-------PNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 138 ~i~e~~~-------~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
+++|..+ ++++|...++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999999888776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-08 Score=114.66 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=122.1
Q ss_pred ccccCcc-chhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh
Q psy10231 56 IISISSD-DASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA 134 (607)
Q Consensus 56 ~~~~s~~-~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~ 134 (607)
.++.+.. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.++.++..+.+.++++-++.|++.+...+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 6788888 999999999999999999999999999999999999999988888888888999999999999999999999
Q ss_pred -hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHHHH-HhcCCCC
Q psy10231 135 -CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGFAA-MHAVPET 199 (607)
Q Consensus 135 -~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~~~-~~~~pes 199 (607)
..+++.+..|+++||+++++.+....+|.++++.++..+ ++...|++.+.+.++..+. ...+|++
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999998887777665 4555666655554443332 2445555
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=101.43 Aligned_cols=190 Identities=12% Similarity=-0.014 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHH
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMG 450 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~ 450 (607)
+++.+.+..+.+.........-.+.+-++.+++. +.+.+...+.++..++.++.+++.||.+||+++..+.++.+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 3344443444443333334444455545566644 356677788889999999999999999999999999999999988
Q ss_pred HHhhhhhhhccccCC------------------------------------CC--CCChHHHHHHHHHHHHHHhccchhh
Q psy10231 451 ISGTYEYYFSELSMD------------------------------------DR--PLNWIPLACILANVCASMLGMLQLP 492 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (607)
+.++.-+........ .. ...+..++..-++.+.+.....+..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 876632111000000 00 0122233333333333334445667
Q ss_pred hhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh----------------------hhHHHHHHHHHHHHHH
Q psy10231 493 WVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL----------------------NMGGMMWAFSCACLLA 550 (607)
Q Consensus 493 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~----------------------g~~~~~~~~~~~~~~~ 550 (607)
.+++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.+.. +|+..|++.+.+.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999998877542 2555677777777666
Q ss_pred HHHhhhcccCCC
Q psy10231 551 MVFIQAFLPETQ 562 (607)
Q Consensus 551 ~~~~~~~~~~~~ 562 (607)
++.. +++|++.
T Consensus 274 ~v~l-~~~p~~l 284 (633)
T TIGR00805 274 SIPF-FFFPKAL 284 (633)
T ss_pred HHHH-HhCcccc
Confidence 5543 4456543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-08 Score=96.68 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=107.3
Q ss_pred hHHHhhhcccccccc--ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh----hhcCchhhhh-hhhH
Q psy10231 29 WIGKLHCNNLTHAIP--SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD----LLGRKTTVQL-TAIP 101 (607)
Q Consensus 29 ~~~~~~~~~~~~~~~--~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D----r~Grr~~l~~-~~~l 101 (607)
...+....|..+++. ...+|.... +++++....+.+--.-.+...+.+++.|..+| ||||||.++. +.++
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~---~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQ---SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHH---HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 334444556555543 233333333 57788888888888888888899999999999 6999887766 5556
Q ss_pred HHHHHHHHHhccchh-----------------HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCcccc-ccchhhHHHHHH
Q psy10231 102 FIIGWTIITVSKGFT-----------------LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGY-LSAFGPVFVSLG 162 (607)
Q Consensus 102 ~~~~~~~~a~a~~~~-----------------~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~-~~~~~~~~~~lG 162 (607)
..++.++..++.++. .++++--+.=++...... +-+++.|...++++.+ +.+.+....++|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 667777777775532 344444455556667777 9999999998776666 999999999999
Q ss_pred HHHHHHHhhhhhHHHHH
Q psy10231 163 VLIVYSLGYIVTWQYTS 179 (607)
Q Consensus 163 ~~ig~~l~~~l~Wr~~f 179 (607)
..+|..++.+.+|+-.|
T Consensus 192 nvLGY~~g~y~~~~~~~ 208 (498)
T KOG0637|consen 192 NVLGYALGSYLGLYKIF 208 (498)
T ss_pred ceeeeecccccCceEEe
Confidence 99999999888665543
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-07 Score=95.86 Aligned_cols=140 Identities=11% Similarity=0.048 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHh
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASML 486 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (607)
......++.++.++|.++.|.++||+|||++++.+.++..++.+..++ ..++..+...=.+.+.+..
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~-------------a~~~~~~~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF-------------APNYWMFLIFRFLSGFFGS 186 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH-------------hCcHHHHHHHHHHHHhhcc
Confidence 455677788889999999999999999999999999999888877766 4555666666666666667
Q ss_pred ccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 487 GMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 487 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+.....+.+..|.++++.|+.+..+ ....+.++.+++...+++.. +|++.+++.....++..++ +++.||.++
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence 7777788999999999999999999 88888999999988888887 7888888877777766655 555557643
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=87.73 Aligned_cols=157 Identities=9% Similarity=-0.053 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC
Q psy10231 391 LYYAVNFFEDAGSSLD--DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP 468 (607)
Q Consensus 391 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
.+-.|.+.++.|++.. .+.+...+..+..+..+.+|++.||+|.|+++..+.+.-.+..++.++. .
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------------~ 113 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------------T 113 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------------H
Confidence 3344555567787554 3567777888899999999999999999999999988888888777762 1
Q ss_pred CChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHH--HHHHH
Q psy10231 469 LNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMW--AFSCA 546 (607)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~--~~~~~ 546 (607)
......+.=++++.+-+.. . ....++...+|++.|+++.|+.+....+|.++++++.+. ....||..... .+...
T Consensus 114 Sl~~L~i~R~llGvaEA~~-~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~ 190 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAAR-I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLV 190 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Confidence 1222233333333333333 3 556889999999999999999999999999999999998 55667765332 23333
Q ss_pred HHHHHHHhhhcccCCC
Q psy10231 547 CLLAMVFIQAFLPETQ 562 (607)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (607)
+.+.+++..+++|..+
T Consensus 191 s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 191 FMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 3334444456667443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=91.66 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=121.2
Q ss_pred ccccccccccccccCCCcccccCc--cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccc-
Q psy10231 38 LTHAIPSILIPQLQKPSSIISISS--DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG- 114 (607)
Q Consensus 38 ~~~~~~~~~~p~l~~~~~~~~~s~--~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~- 114 (607)
++........+.+.. +++.+. .+.+++.+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+
T Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
T COG0477 16 LDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92 (338)
T ss_pred HhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence 444444555566655 555555 47899999999999999999999999999998888888776777788888876
Q ss_pred -hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCC-CccccccchhhH-HHHHHHHHHHHHhhhh------hHHHHHHHhHH
Q psy10231 115 -FTLLCVGRFITGMAIGMSSA-CYVYVAEICLP-NDRGYLSAFGPV-FVSLGVLIVYSLGYIV------TWQYTSAACAV 184 (607)
Q Consensus 115 -~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~-~~r~~~~~~~~~-~~~lG~~ig~~l~~~l------~Wr~~f~~~~~ 184 (607)
.+.+++.|+++|++.+...+ ..+++.|+.++ ++|+...+.... ...+|..+++.++..+ +||+.|.....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999999999999 99999999998 778888888888 5888888888776655 69997777666
Q ss_pred HHHHH
Q psy10231 185 VALVG 189 (607)
Q Consensus 185 ~~~~~ 189 (607)
.....
T Consensus 173 ~~~~~ 177 (338)
T COG0477 173 LGLLL 177 (338)
T ss_pred HHHHH
Confidence 65444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=90.25 Aligned_cols=147 Identities=13% Similarity=-0.019 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 388 YIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.......|.+.++.|.+.. .+.......++..++.++.|++.||+|||+.+..+.....++.+.. . .
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~-------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---A-------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---h--------
Confidence 3445567788788787554 5677788889999999999999999999999888877666555433 1 0
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh--hHHHHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN--MGGMMWAFS 544 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g--~~~~~~~~~ 544 (607)
+..+..+....+.+.+.+.. .+....++.|.+| +.|+.+.++.+....+|..+++.+.+.+.+..+ |+..|...+
T Consensus 85 -~~~~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~ 161 (355)
T TIGR00896 85 -PGTALLFAGTALIGVGIAII-NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWA 161 (355)
T ss_pred -ccHHHHHHHHHHHHHHHHHH-hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 12222222222222222222 2333456778876 579999999999999999999999888877653 666666655
Q ss_pred HHHHH
Q psy10231 545 CACLL 549 (607)
Q Consensus 545 ~~~~~ 549 (607)
...++
T Consensus 162 ~~~~~ 166 (355)
T TIGR00896 162 LPALL 166 (355)
T ss_pred HHHHH
Confidence 54433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-06 Score=77.84 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=74.5
Q ss_pred ccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy10231 48 PQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGM 127 (607)
Q Consensus 48 p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~ 127 (607)
|.+....+.++....|+|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.+++ +.-.+++|-.++++|++.|+
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGI 136 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhH
Confidence 44444444888999999999888888888999999999999999997665555555443 34467899999999999999
Q ss_pred hhhhHhh--hHhHHhhcc
Q psy10231 128 AIGMSSA--CYVYVAEIC 143 (607)
Q Consensus 128 g~g~~~~--~~~~i~e~~ 143 (607)
..+..+. -.-++.|..
T Consensus 137 aTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 9998888 445666755
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=92.50 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
.+......++..++.++.|+++|++|||+.++.+.+...++.++.+.. .......+.=++.+.+.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhhh
Confidence 578888899999999999999999999999999999999999888773 12223333333333333333
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL--NMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
. .+...+.+|..|++.||...+.......+|..++ .+.+....+. +|+..+.+..+.+++..+. .+++||+.+
T Consensus 160 ~-~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~ 234 (513)
T KOG0254|consen 160 S-VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR 234 (513)
T ss_pred h-hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence 2 3334899999999999999999999888777776 5555555543 7887777777777777766 677787643
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.6e-08 Score=101.27 Aligned_cols=156 Identities=17% Similarity=0.258 Sum_probs=141.2
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhc--CchhhhhhhhHHHHHHHHHHhccchh
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLG--RKTTVQLTAIPFIIGWTIITVSKGFT 116 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~G--rr~~l~~~~~l~~~~~~~~a~a~~~~ 116 (607)
.+......+|...+ +.+.++++.+.+.++..+...++.++.|+++|+.. ++.+..++++..+++.+.++++++++
T Consensus 313 g~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~ 389 (509)
T KOG2504|consen 313 GFNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV 389 (509)
T ss_pred HHHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33344566677777 88999999999999999999999999999999988 56677788888999999999999999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~ 190 (607)
.++..-.+.|+..|.... ...++.|..+.++-+.+.|+.....+++.++||.+++.+ +|...|+.+++..++..
T Consensus 390 ~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 390 GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA 469 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence 999999999999999999 888999999999999999999999999999999999988 69999999999998888
Q ss_pred HHHhcCC
Q psy10231 191 AAMHAVP 197 (607)
Q Consensus 191 ~~~~~~p 197 (607)
++++.+|
T Consensus 470 ~~~~~~~ 476 (509)
T KOG2504|consen 470 VLLLILR 476 (509)
T ss_pred HHHHHhH
Confidence 7777776
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=93.41 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=96.3
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc--chhHHHHHHHHHhhhhhhHh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK--GFTLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~--~~~~l~~~R~l~G~g~g~~~ 133 (607)
.+|.++...++......++..++.++.+++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~ 337 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM 337 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 4565555555555555677888999999999999999999999999888887777754 67777788899999999999
Q ss_pred h-hHhHHhhccCCC-------ccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 134 A-CYVYVAEICLPN-------DRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 134 ~-~~~~i~e~~~~~-------~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
+ ..++..|..+.+ ++|...++.+....+|..+|+.+.+.+
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999888754 358889999999999999988877655
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-05 Score=85.92 Aligned_cols=149 Identities=14% Similarity=0.193 Sum_probs=120.1
Q ss_pred cccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhccc-----
Q psy10231 41 AIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSKG----- 114 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~~----- 114 (607)
++.+.+...+.+ .++.++++...+...+....-+..+++|.++|+ +||++.++++.++..++.++.+++..
T Consensus 5 Gm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~ 81 (654)
T TIGR00926 5 GMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH 81 (654)
T ss_pred ecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 334445555555 678899999999999998889999999999995 69999999999999999988877521
Q ss_pred ---hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCc---cccccchhhHHHHHHHHHHHHHhhhh-----------hHH
Q psy10231 115 ---FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPND---RGYLSAFGPVFVSLGVLIVYSLGYIV-----------TWQ 176 (607)
Q Consensus 115 ---~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~ig~~l~~~l-----------~Wr 176 (607)
...++++-.+..+|.|++-+ ..+...|.+++++ |-....++..+.++|+++++.+..++ +|.
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 23466778889999999999 9999999997643 56778888889999999988777665 388
Q ss_pred HHHHHhHHHHHHHHHH
Q psy10231 177 YTSAACAVVALVGFAA 192 (607)
Q Consensus 177 ~~f~~~~~~~~~~~~~ 192 (607)
..|.+.++..++.++.
T Consensus 162 ~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 162 LAFGVPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877776653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-06 Score=79.44 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccc
Q psy10231 384 ASGMYIVLYYAVNFFEDAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSEL 462 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
....|.+..|.|++-++.|++++. ..+.....++..+ .++.|.+.|++|++..+.++.....++..++........
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-- 91 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-- 91 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence 345688899999998888987654 3344444455544 588899999999999999999999998877755321110
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcc-chhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 463 SMDDRPLNWIPLACILANVCASMLGM-LQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
...+.|.. +...+..+.+..+ .+.......+.||. .||++.|+.-....+++.+-..+...+.+.
T Consensus 92 ---~~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 92 ---PSLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ---CccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 11122222 2222222222222 23333555688985 699999999999999999888777666654
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=87.09 Aligned_cols=143 Identities=13% Similarity=0.005 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHh
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASML 486 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (607)
.+........+.+++.+.++++.||+|-|+++..+.++.+++.++..+.... ..+ .++..=++.+....
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----------~~~-~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----------GFY-LLLVLRFLQGLGQG 143 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----------cch-hhHHHHHHhHHHHh
Confidence 4567777888999999999999999999999999999999888888775322 222 22333333333333
Q ss_pred ccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhcccC
Q psy10231 487 GMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL-LNMGGMMWAFSCACLLAMVFIQAFLPE 560 (607)
Q Consensus 487 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (607)
...|....+.+.-.|+++|++..++.....++|..++-++.|.+.+. .||...|++.+++.++..++-+++..+
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577778899999999999999999999999999999999999998 999999999999998887775555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-06 Score=84.24 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=101.0
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
.+|.++.+.++..+.+..+..+|.++.+++.||+|+|+++.++.++..++.++....++... ..+-++.|++.+..+|
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998888888888776666555433 3456689999999999
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHH
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVV 185 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~ 185 (607)
..+...+..+++ .+.+.++. ....+|..++|.+.+.+ |.+..|++..+.
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 899888887754 34555665 45668889999877766 667777644433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=87.35 Aligned_cols=144 Identities=19% Similarity=0.298 Sum_probs=115.4
Q ss_pred ccc-cCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc-cchhHHHHH----HHHHhhhh
Q psy10231 56 IIS-ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-KGFTLLCVG----RFITGMAI 129 (607)
Q Consensus 56 ~~~-~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-~~~~~l~~~----R~l~G~g~ 129 (607)
+.+ .+....+.+.+...++-...-...+++..|+|.|++++++.+.+++=..+.+.. ++.+...+. ..++|+.-
T Consensus 236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf 315 (400)
T PF03825_consen 236 ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF 315 (400)
T ss_pred HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence 455 566777888888888888888999999999999999999999999988888887 555444333 45699999
Q ss_pred hhHhh-hHhHHhhccCCCccccccchhhH-HHHHHHHHHHHHhhhh----------hHHHHHHHhHHHHHHHHHHH-hcC
Q psy10231 130 GMSSA-CYVYVAEICLPNDRGYLSAFGPV-FVSLGVLIVYSLGYIV----------TWQYTSAACAVVALVGFAAM-HAV 196 (607)
Q Consensus 130 g~~~~-~~~~i~e~~~~~~r~~~~~~~~~-~~~lG~~ig~~l~~~l----------~Wr~~f~~~~~~~~~~~~~~-~~~ 196 (607)
+..+. +..|+.+..|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+...++..++. ++.
T Consensus 316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999 99999999999999999999875 4789999999999888 45566666666666655543 444
Q ss_pred CCC
Q psy10231 197 PET 199 (607)
Q Consensus 197 pes 199 (607)
+|+
T Consensus 396 k~~ 398 (400)
T PF03825_consen 396 KPK 398 (400)
T ss_pred cCC
Confidence 544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-06 Score=85.63 Aligned_cols=162 Identities=11% Similarity=-0.063 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHH-HhC----CCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhhhhh
Q psy10231 385 SGMYIVLYYAVNFFE-DAG----SSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGTYEY 457 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~-~~g----~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~~~~ 457 (607)
.++|.+..-+..|+. +.+ ++.+ +......++...-...+++|+++|| +|+|+...++.+++.++.++++...
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~- 113 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS- 113 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-
Confidence 345555555555543 233 5443 4445555666666778899999999 6999999999999999999987621
Q ss_pred hhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc--hhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh
Q psy10231 458 YFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV--RGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN 535 (607)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g 535 (607)
........+. +.+........=+....+..|.+|++. |-.+.++.++..++|+.++|.+.+++.++.|
T Consensus 114 ---------~~~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 114 ---------VSGPGGLYIG-LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred ---------cccccHHHHH-HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 0111122222 222222222334555688899987643 6778888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc
Q psy10231 536 MGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
|...|...++-+.++.+..++.
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988888888777765544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-06 Score=89.45 Aligned_cols=138 Identities=13% Similarity=0.173 Sum_probs=112.6
Q ss_pred hhhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc
Q psy10231 33 LHCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS 112 (607)
Q Consensus 33 ~~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a 112 (607)
.++..+.........+.+.+. .++.+ ...+.+.....++..++.+++++++||+|+|+++..+.++.+++.++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~--vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTY--VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHH--HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 344444555545555555541 23333 678888889999999999999999999999999999999999999999888
Q ss_pred c--chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCC-------CccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 113 K--GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLP-------NDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 113 ~--~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
+ |.+.+++.-++.|++.+.... ..++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 6 999999999999999999999 99999998873 3348888899888888888888877755
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-06 Score=89.39 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=118.0
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc----------cchhHHHHHHHHH
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS----------KGFTLLCVGRFIT 125 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a----------~~~~~l~~~R~l~ 125 (607)
++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 789999999999999999999999999999999999999999999999887654311 4444566678899
Q ss_pred hhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h-----HHHHH---HHhHHHHHHHHHH
Q psy10231 126 GMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T-----WQYTS---AACAVVALVGFAA 192 (607)
Q Consensus 126 G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~-----Wr~~f---~~~~~~~~~~~~~ 192 (607)
+++.+.... ...++.+..|++++|...++.....++|..+++.+++.+ | ++..+ .++.+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999888877 2 33333 2333444444445
Q ss_pred HhcCCCCh
Q psy10231 193 MHAVPETP 200 (607)
Q Consensus 193 ~~~~pes~ 200 (607)
.+++|+..
T Consensus 442 ~~llP~~~ 449 (468)
T TIGR00788 442 LHLLPRLE 449 (468)
T ss_pred HHhCCCCc
Confidence 56789743
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-06 Score=83.87 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=101.3
Q ss_pred HHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCcccc
Q psy10231 72 VISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGY 150 (607)
Q Consensus 72 ~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~ 150 (607)
.+.-.-|.++.+.+.||+|||+.+..+.++++++.++...+.+-....+.-|..-+...+.+. .++|.-|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 345556889999999999999999999999999999988876644444444444444555566 8899999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhhhh--hHHHHHHHhHHHHHHHHHHHhcCCCCh
Q psy10231 151 LSAFGPVFVSLGVLIVYSLGYIV--TWQYTSAACAVVALVGFAAMHAVPETP 200 (607)
Q Consensus 151 ~~~~~~~~~~lG~~ig~~l~~~l--~Wr~~f~~~~~~~~~~~~~~~~~pes~ 200 (607)
..|.-..+.-+|.++.|+++... +-.....+.+...+++.++.+++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999443 444455666677777777778888443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-05 Score=77.05 Aligned_cols=124 Identities=8% Similarity=-0.016 Sum_probs=86.8
Q ss_pred cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHh
Q psy10231 62 DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVA 140 (607)
Q Consensus 62 ~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~ 140 (607)
...+.+.-+-.+...+.-+.+.++.+|+.-+.=..++.+++.++.++.++++|.+.=+++-++.+++.|..-. ...+ +
T Consensus 59 ~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t 137 (402)
T PF02487_consen 59 VSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-T 137 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-H
Confidence 3345555556666677777888889988766556677778888999999999999999999999999998888 6665 4
Q ss_pred hccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHHHH
Q psy10231 141 EICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALVGF 190 (607)
Q Consensus 141 e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~~~ 190 (607)
..+++ ...+.+..|.+.+.++|+..-..+ +-|..+.+..++.++..
T Consensus 138 ~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~ 188 (402)
T PF02487_consen 138 HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFL 188 (402)
T ss_pred HhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 45553 356777777777777776544333 33555555544444333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=85.10 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=89.5
Q ss_pred CccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh-----ccchhHHHHHHHHHhhhhhhHhh
Q psy10231 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV-----SKGFTLLCVGRFITGMAIGMSSA 134 (607)
Q Consensus 60 s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~-----a~~~~~l~~~R~l~G~g~g~~~~ 134 (607)
+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655432 34567777788899999999999
Q ss_pred -hHhHHhhccCC-------CccccccchhhHHHHHHHHHHHHHhhh
Q psy10231 135 -CYVYVAEICLP-------NDRGYLSAFGPVFVSLGVLIVYSLGYI 172 (607)
Q Consensus 135 -~~~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~ig~~l~~~ 172 (607)
..+++.|..+. ++.|...+......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999662 223567888888888888888777664
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0013 Score=68.00 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy10231 391 LYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPL 469 (607)
Q Consensus 391 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
...+..|+...|++.. .+..-....+.++.+.++..++.+|+|..+.-..+......+..+.......+.. +....
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~---~~~~~ 354 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS---PFSSI 354 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC---Cchhh
Confidence 3344556666677544 3555666677888999999999999998887777766655554443333322221 00011
Q ss_pred ChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHH
Q psy10231 470 NWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTT 523 (607)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~ 523 (607)
....++..+...=.+--++--...-+..|..|++.||...|.-+...++...+.
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 111122222222111222222233678899999999999999998888765553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=84.10 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=87.3
Q ss_pred cchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh--ccchhHHHHHHHHHhhhhhhHhh-hHhH
Q psy10231 62 DDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV--SKGFTLLCVGRFITGMAIGMSSA-CYVY 138 (607)
Q Consensus 62 ~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~--a~~~~~l~~~R~l~G~g~g~~~~-~~~~ 138 (607)
...+.+.....++..++.+++++++||+|+|+.+..+.++..++.+...+ .++.+.+++..++.|++.+...+ ..++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999999999999999888766654443333 35777888889999999999999 9999
Q ss_pred HhhccCC-------CccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 139 VAEICLP-------NDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 139 i~e~~~~-------~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
++|..+. ++.|...+.......+|..+|+.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988762 2235667888888888888888888766
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-08 Score=105.21 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
........++..+|+++.|++.||+|||+.+..+..+..++.++.++... ..+.+...+.-.+.+. ...+
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~R~~~G~-~~g~ 118 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---------YNNFWMLLIGRFLIGF-GIGG 118 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---------cccccccccccccccc-cccc
Confidence 45666777888999999999999999999999999988888877766210 0022222222222222 2233
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh---hhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL---LNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
..+....++.|..|++.|+...++.+....+|..++..+.....+. .+|+..+...+..+++..+ ...++||+.+
T Consensus 119 ~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~ 196 (451)
T PF00083_consen 119 AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPR 196 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 3455668999999999999999998888878777766554433222 3366555555555544433 3466788743
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=82.75 Aligned_cols=144 Identities=11% Similarity=0.129 Sum_probs=119.3
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
+-+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++.+++.+=-+++++++|.+.+.+.+.+.|+-.+....
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhccCCCccccccchh-hHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHH-HhcCCCC
Q psy10231 135 CYVYVAEICLPNDRGYLSAFG-PVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAA-MHAVPET 199 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~-~~~~pes 199 (607)
...|+++.+|++-.++...+. +...++|..+...+++.+ |.+..|++.+.+.++..+. .+.+++.
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999999988877777664 788888888888888877 8899998888877665544 3445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=65.97 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.7
Q ss_pred ccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhH
Q psy10231 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117 (607)
Q Consensus 38 ~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~ 117 (607)
......++++|.+++ |.++|.++.||+.+..++|+.+|++...++.++..+++.+..+.+...+..+.+++.++++.
T Consensus 6 igRFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred hHHHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 334456889999999 99999999999999999999999999999999988899999999999999999999998876
Q ss_pred HH
Q psy10231 118 LC 119 (607)
Q Consensus 118 l~ 119 (607)
+.
T Consensus 83 w~ 84 (85)
T PF06779_consen 83 WS 84 (85)
T ss_pred Hh
Confidence 53
|
Note that many members are hypothetical proteins. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=82.75 Aligned_cols=143 Identities=12% Similarity=-0.019 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
+....++.++.+++.+.++.+.||++..+.+....+.-.+..++-.. ..+...+++.-++.+.+..+
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-------------~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-------------VHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHhcc
Confidence 55778888999999999999999999554444333332222211111 11223334444444445555
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH------hhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY------LLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
..|....++...|.++.|+.-+|+.+....+|++.++.+...+.+ ..||++.|.+-++++++.++++++++|+.
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 567777899999999999999999999999999999988887643 46899999999999999999999999876
Q ss_pred CC
Q psy10231 562 QG 563 (607)
Q Consensus 562 ~~ 563 (607)
..
T Consensus 231 P~ 232 (495)
T KOG2533|consen 231 PS 232 (495)
T ss_pred hh
Confidence 55
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.7e-05 Score=78.47 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhh
Q psy10231 414 VAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPW 493 (607)
Q Consensus 414 ~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (607)
.++..++.+...|.++||+|||..+....+...+....+.+. ..|..+ ... ..+.........+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~--~~~-l~g~~~~~~s~~~ 134 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL--LLG-LSGGFSAIFSVGF 134 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh--hcc-cccchhhhhhhhh
Confidence 467788899999999999999999888877777766665541 122222 111 1222222345566
Q ss_pred hhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCHH
Q psy10231 494 VMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLL 567 (607)
Q Consensus 494 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (607)
+++++...++.|....|+.+.....+..++|.+.+.+.+..|...++.+.....++..+...+.+||+...+.+
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999998766543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=77.15 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=127.5
Q ss_pred cccCcchhHHHhhhcccccccccc---ccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhh
Q psy10231 22 ISSDDASWIGKLHCNNLTHAIPSI---LIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQL 97 (607)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~---~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~ 97 (607)
..++...|-..++ .|+....... =+|.+.. |-|.|..+.|++.+...+.....++....+++|. .+|+..+.
T Consensus 204 vw~~~~aW~vtLf-mGlqS~~~Y~~~~WLP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~ 279 (395)
T COG2807 204 VWRSPLAWQVTLF-MGLQSLLYYIVIGWLPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL 279 (395)
T ss_pred cccCchhHHHHHH-HHhhHHHHHHHHHHHHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 4556667876664 3444433323 3466666 8999999999999999999999999999999965 56777777
Q ss_pred hhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCc-cccccchhhHHHHHHHHHHHHHhhhh--
Q psy10231 98 TAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPND-RGYLSAFGPVFVSLGVLIVYSLGYIV-- 173 (607)
Q Consensus 98 ~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~-r~~~~~~~~~~~~lG~~ig~~l~~~l-- 173 (607)
...++.++...+.+.+.-..+.. -++.|+|.|+.++ +.+.+.+..+..+ -++..++.+....+=..+||.+.+++
T Consensus 280 ~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 280 ALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 88888888888878776544444 4999999999999 9999998887544 46666676666666667788888888
Q ss_pred ---hHHHHHHHhHHHHHHHHHH
Q psy10231 174 ---TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 174 ---~Wr~~f~~~~~~~~~~~~~ 192 (607)
+|+...+......+...+.
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHH
Confidence 8999988888777766653
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00052 Score=67.50 Aligned_cols=128 Identities=11% Similarity=0.056 Sum_probs=83.1
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh-----hhcCchhhhh-hhhHHHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD-----LLGRKTTVQL-TAIPFIIGWT 107 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D-----r~Grr~~l~~-~~~l~~~~~~ 107 (607)
.+-|.-.|..+ .+|.+-+ .-|.|-++.+...-++.= + .--+.+.++.| |+||||..++ +..+.+....
T Consensus 41 llQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~P-~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml 114 (510)
T KOG3574|consen 41 LLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYWP-F-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML 114 (510)
T ss_pred HHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhhH-H-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence 34577777777 8888887 667777777655433221 1 12578899999 9999987665 3333333333
Q ss_pred HHHhc-----------cchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHH
Q psy10231 108 IITVS-----------KGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 108 ~~a~a-----------~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~ 167 (607)
+.+.- +|...+...-++.-+..+.--. .-.+.-.+..+++-|-+.....++...|.+++.
T Consensus 115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 33221 3344444455666666666666 667777788888888888888877777777654
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=75.95 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC-CChHHHHHHHHHHHHHH
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP-LNWIPLACILANVCASM 485 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 485 (607)
.........++.++|.++.|++.||+|||++.-..+++++++.++.++.... +.. .....+.+.=.+.+...
T Consensus 86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~-------~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT-------TSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC-------CCCcchhhHHHHHHHHhhccc
Confidence 3556677788899999999999999999999999888888888765552111 111 11122222222233333
Q ss_pred hccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHh
Q psy10231 486 LGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTV 524 (607)
Q Consensus 486 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~ 524 (607)
.+=.|+..++++|....+.||.-.+....++..|...+.
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence 345788889999999999999887776666665544433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.012 Score=61.89 Aligned_cols=124 Identities=6% Similarity=0.070 Sum_probs=91.5
Q ss_pred cccccCCCccccc-----CccchhHHHHHHHHHhhHh-hhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc----cc--
Q psy10231 47 IPQLQKPSSIISI-----SSDDASWIASLGVISTPVG-SLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS----KG-- 114 (607)
Q Consensus 47 ~p~l~~~~~~~~~-----s~~~~~~i~s~~~l~~~i~-~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a----~~-- 114 (607)
+-.++| .+.+ +...+.++-+...+..++. .++.+++++|++|++++-+....+...-++.++. ++
T Consensus 26 LR~lKD---~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 26 LRDTKD---TLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHhhhh---heeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 345555 6555 3357889998888877777 8999999999999999988888777777776655 11
Q ss_pred -------------------------hhHHHHHHHHHhhhhhhHhh--hHhHHhhccCCCccccccchhhHHHHHHHHHHH
Q psy10231 115 -------------------------FTLLCVGRFITGMAIGMSSA--CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 115 -------------------------~~~l~~~R~l~G~g~g~~~~--~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~ 167 (607)
.|...+.-+..-+-...... -..++.|.++.++-.|..++...+.++|.++++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333344444444443 567889999999999999999999999999999
Q ss_pred HHhhhh
Q psy10231 168 SLGYIV 173 (607)
Q Consensus 168 ~l~~~l 173 (607)
.+..++
T Consensus 183 ~~~~~~ 188 (472)
T TIGR00769 183 RTIKYF 188 (472)
T ss_pred HHHHHH
Confidence 887665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=64.48 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=108.9
Q ss_pred ccccCccchh-HHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh
Q psy10231 56 IISISSDDAS-WIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA 134 (607)
Q Consensus 56 ~~~~s~~~~~-~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~ 134 (607)
+.++++.|.. -+.-...-.+.+.-++.=.+.|-.--|++++.-.+.......+.-+.++.+.+=+.-++.|...+....
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIA 114 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIA 114 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHh
Confidence 5566666543 223333445556667777889999999999998888888888889999999999999999999988887
Q ss_pred hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh------hHHHHHHHhHHHHHHHHHHHhcCCCCh
Q psy10231 135 CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV------TWQYTSAACAVVALVGFAAMHAVPETP 200 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l------~Wr~~f~~~~~~~~~~~~~~~~~pes~ 200 (607)
-++|+-+..+|+++.++.+.-....-.|...|..++..+ +++..-.+......++....+++|..+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 889999999999999999999888888888888888877 444444444444444444334444444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00045 Score=73.39 Aligned_cols=168 Identities=9% Similarity=-0.034 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc----cCCch-hHHHhhHHHHHHHHHHhhhhhhh
Q psy10231 387 MYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM----FSRRA-LATTSAFFMALSMGISGTYEYYF 459 (607)
Q Consensus 387 ~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~l~~~~~~~~~~~~~~~~~~~~~ 459 (607)
...+..|+..++.+ .|.+.. .+....+.-+...+..++.|+++|| +|||+ .+..+.+..+++..++.. .+
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~---~p 101 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS---TP 101 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh---CC
Confidence 34555666666654 466543 4556666677888999999999997 57754 455565666665544322 11
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccC-ccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh----
Q psy10231 460 SELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP-LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL---- 534 (607)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~---- 534 (607)
.. ..........+..+++..++.....| ..++.+|+.+ .++|++..+.-...+.+|..+++.+...+....
T Consensus 102 ~~---s~~~~~~y~~~~~~~~~~~~t~~~ip-y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~ 177 (460)
T PRK11462 102 DL---SMNGKMIYAAITYTLLTLLYTVVNIP-YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN 177 (460)
T ss_pred CC---CcchHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 10 00011112222333333344333333 2377778766 688999999999999888888777765555443
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 535 ---NMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 535 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
+|.....+++++.+++..+++...+|.
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 344445555555555554544444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=72.77 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=128.7
Q ss_pred chhHHHhhhcccccccccccc-ccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhh-hhcCchhhhhhhhHHHH
Q psy10231 27 ASWIGKLHCNNLTHAIPSILI-PQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMD-LLGRKTTVQLTAIPFII 104 (607)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~D-r~Grr~~l~~~~~l~~~ 104 (607)
+.++..+++..+.+.+--.++ |+=.+ -|+++..|..-+.+....|..++-...|++.. |.++|+...+++....+
T Consensus 211 ~~f~~fl~l~t~a~~~QD~iLEPygg~---Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~ 287 (403)
T PF03209_consen 211 RRFFVFLFLGTLAFFMQDVILEPYGGE---VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL 287 (403)
T ss_pred hHHHHHHHHHHHHHHhhHHHcCCchhH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344555554444444433333 44444 78999999999999999999999999999888 67888888888887777
Q ss_pred HHHHHH---hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-------
Q psy10231 105 GWTIIT---VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV------- 173 (607)
Q Consensus 105 ~~~~~a---~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l------- 173 (607)
+..+.. ...+.+.+...-++.|++.|.... ..+.+.|+..+++-|..++.|.....++..++..+++.+
T Consensus 288 ~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~ 367 (403)
T PF03209_consen 288 AFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRAL 367 (403)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665544 447889999999999999999999 999999999999999999999999998888888888776
Q ss_pred -------hHHHHHHHhHHHHHHHHH
Q psy10231 174 -------TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 174 -------~Wr~~f~~~~~~~~~~~~ 191 (607)
+|-.+|.+.++.-++.+.
T Consensus 368 ~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 368 FGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHH
Confidence 566777777766665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-05 Score=65.15 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=96.0
Q ss_pred ccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hH
Q psy10231 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CY 136 (607)
Q Consensus 58 ~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~ 136 (607)
++++..--.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.+.. +-++.+.++.+-++.|++.+..++ .-
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 4555555556677777888899999999999999999999999988655443 567889999999999999999999 89
Q ss_pred hHHhhccCCCccccccchhhHHHHHHHHHHHHHhhh
Q psy10231 137 VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI 172 (607)
Q Consensus 137 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~ 172 (607)
.++.+..++++|++-.+++-.....+.++|.++...
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=70.87 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=119.1
Q ss_pred chhHHHhhhcccccccc---ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHH-
Q psy10231 27 ASWIGKLHCNNLTHAIP---SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPF- 102 (607)
Q Consensus 27 ~~~~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~- 102 (607)
.-|+...++..+...+. +.--..+++ .||+|+...+.+.+....-.++.+++.|.++|++|++...+.+..+.
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~fF~~---rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPMFFQK---RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT 341 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHH---hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence 35777766665544432 111123445 89999999999999999999999999999999999998777655444
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-------h
Q psy10231 103 IIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-------T 174 (607)
Q Consensus 103 ~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-------~ 174 (607)
.++-....| +++.=.++..+.|+....... ....++-..|+++-|.+.+..+...++|-.+.+++++.+ .
T Consensus 342 l~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~ 419 (459)
T KOG4686|consen 342 LLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD 419 (459)
T ss_pred HHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence 444444433 344445677888988887777 777888889999999999999999999999999999988 2
Q ss_pred HHH-HHHHhHHHHHHHHHHHhcC
Q psy10231 175 WQY-TSAACAVVALVGFAAMHAV 196 (607)
Q Consensus 175 Wr~-~f~~~~~~~~~~~~~~~~~ 196 (607)
|-- .|.+++.+++....+++.+
T Consensus 420 ~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 420 NLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhe
Confidence 333 3444555555544443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00061 Score=67.99 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy10231 391 LYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPL 469 (607)
Q Consensus 391 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
-...|.+.+..+.+. ++......+..+..++++..+++.+|+|+|+-++.+..++++++.++.-... ..
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~----------~~ 102 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS----------SK 102 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh----------hh
Confidence 444566655556654 4667777788888999999999999999999999999999998877632110 11
Q ss_pred ChHHHHHHHHHHHHHHhc-cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh---------------
Q psy10231 470 NWIPLACILANVCASMLG-MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL--------------- 533 (607)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~--------------- 533 (607)
.+. ..+..+|..+.+.+ .-+..+.++..+.|++..+.-+.+...+..+|++++|.+.+++..+
T Consensus 103 ~y~-~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~ 181 (422)
T COG0738 103 SYG-FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK 181 (422)
T ss_pred hHH-HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 121 22222222222222 2344557888888888888889999999999999999999988873
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHh
Q psy10231 534 ----LNMGGMMWAFSCACLLAMVFI 554 (607)
Q Consensus 534 ----~g~~~~~~~~~~~~~~~~~~~ 554 (607)
..++.++...+...++..+..
T Consensus 182 ~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 182 GADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 124456666666666555543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=8e-05 Score=77.06 Aligned_cols=161 Identities=10% Similarity=0.019 Sum_probs=105.6
Q ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHHHHHHHhHhhcccCC-chhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCCh
Q psy10231 396 NFFEDAGSSLD---DYVASIIVAGLRFFMAIIGSACIQMFSR-RALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW 471 (607)
Q Consensus 396 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (607)
.|+++.+.+.+ -++......++..+++++.++...|.+. |+.++.+.+++.++.++.......+. ...+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-------~~~y 131 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-------GVKY 131 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-------chHH
Confidence 45555444332 3566777889999999999999999886 78888899999999988855443321 1222
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh-------------hhhHH
Q psy10231 472 IPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL-------------LNMGG 538 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~-------------~g~~~ 538 (607)
..+++=+ ..+.+.+.....=.|+++..-.+.|.++++......-++.++||.+...+... .-+..
T Consensus 132 ~mL~~R~--l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa 209 (488)
T KOG2325|consen 132 LMLVARI--LTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA 209 (488)
T ss_pred HHHHHHH--HcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence 3222222 22333333444447888877777888888887776677777776655433221 11345
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy10231 539 MMWAFSCACLLAMVFIQAFLPETQGKT 565 (607)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (607)
+-|+.+.+.++..++..++++|..+..
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccCc
Confidence 788888888888888888888765443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.6e-05 Score=77.11 Aligned_cols=140 Identities=12% Similarity=0.043 Sum_probs=118.5
Q ss_pred CcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHh
Q psy10231 54 SSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 54 ~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~ 133 (607)
.+|.+-.+.-.|.....-..|-.+.-++.+++..++|+-+++..++..+.+=.+.....+|.|+.+..-+++|+..+.++
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW 477 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence 34667777788888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hHhHHhhccCCCccccccchhhHH-HHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH
Q psy10231 134 A-CYVYVAEICLPNDRGYLSAFGPVF-VSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM 193 (607)
Q Consensus 134 ~-~~~~i~e~~~~~~r~~~~~~~~~~-~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~ 193 (607)
. ..+|++...||+-|..+.++++.. .++|--+|.++|+.+ +=|..|.+.++.+++.+++.
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999998888887433 455555555555554 78888888888877766644
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=70.75 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=117.1
Q ss_pred cccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhhhhhHHHHHHHHHHhccc-----
Q psy10231 41 AIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQLTAIPFIIGWTIITVSKG----- 114 (607)
Q Consensus 41 ~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~a~a~~----- 114 (607)
++...++..+.. ++|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++..+..++..
T Consensus 55 g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 55 GLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred cchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 444566666677 8888888888888889888889999999999965 9999999999998888665544311
Q ss_pred --------------------hhHHHHHHHHHhhhhhhHhh-hHhHHhhccC---CCc---cccccchhhHHHHHHHHHHH
Q psy10231 115 --------------------FTLLCVGRFITGMAIGMSSA-CYVYVAEICL---PND---RGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 115 --------------------~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~---~~~---r~~~~~~~~~~~~lG~~ig~ 167 (607)
...+..+.-+..+|.|+.-+ ..++-+|-++ +++ +...+.++....++|..++-
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 23666778888899999999 9999999998 322 24778888888999998887
Q ss_pred HHhhhh----hHHHHHHHhHHHHHHHHH
Q psy10231 168 SLGYIV----TWQYTSAACAVVALVGFA 191 (607)
Q Consensus 168 ~l~~~l----~Wr~~f~~~~~~~~~~~~ 191 (607)
.+-.+. +|.+.|.+..+..+++.+
T Consensus 212 t~~vyiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 212 TVLVYIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred HHHHhhhhcccceeeccHHHHHHHHHHH
Confidence 777666 999999988887766655
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.1e-05 Score=57.50 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=50.0
Q ss_pred cccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHH
Q psy10231 43 PSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPF 102 (607)
Q Consensus 43 ~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~ 102 (607)
.+...|.+....++.|+|..|+|.+.++..+...++++++|.++||+||++..+....++
T Consensus 16 ~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 345556666555589999999999999999999999999999999999998877665543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00064 Score=70.33 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=96.9
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc--chhHHHHHHHHHhhhhhhHh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK--GFTLLCVGRFITGMAIGMSS 133 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~--~~~~l~~~R~l~G~g~g~~~ 133 (607)
-++.++.+..+.......+..++.+++.++++|+|+|+++..+.++..++.++.-+.+ +.+.+++..++.++|.+...
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 4455677777888888888888899999999999999999999999999999998876 78899999999999999999
Q ss_pred h-hHhHHhhccC------CCcc-ccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 134 A-CYVYVAEICL------PNDR-GYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 134 ~-~~~~i~e~~~------~~~r-~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
+ ..+++.|..+ .++| |...+......=+|..++..+.++.
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888887664 2222 6777777777777777777555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=58.07 Aligned_cols=160 Identities=14% Similarity=0.035 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCC
Q psy10231 392 YYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLN 470 (607)
Q Consensus 392 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (607)
.|.-.++++.|++.. ...........+.+...+.|.+.||+|||+..+...++..++++.--. ...
T Consensus 55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~ 121 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNY 121 (354)
T ss_pred chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------ccc
Confidence 333344466677544 444555555667788888999999999999888877777777754321 222
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhhhccc----cCccchhhHHHHHHHHHH-HHHHHHhhhcHHHHHhhhh--HHHHHHH
Q psy10231 471 WIPLACILANVCASMLGMLQLPWVMIAEL----FPLSVRGIMGGIVCSLGY-LFIFTTVKMYPDLMYLLNM--GGMMWAF 543 (607)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~g~~~~~~~-~~~~i~~~i~~~l~~~~g~--~~~~~~~ 543 (607)
+..+..=++.+.........--.=++.|. +|++..+...+......+ +.++.+..+.-.+.+..+. ..+|...
T Consensus 122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a 201 (354)
T PF05631_consen 122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence 23222222222221111111111123333 444444444444442322 3334444444455555544 5688887
Q ss_pred HHHHHHHHHHhhhcccCCCCC
Q psy10231 544 SCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~ 564 (607)
..+.+++.+++...-+|..+.
T Consensus 202 ~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 202 IVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHHhcccccCCC
Confidence 777777777776666776554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0063 Score=66.86 Aligned_cols=151 Identities=13% Similarity=-0.025 Sum_probs=96.2
Q ss_pred hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHH
Q psy10231 401 AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACIL 478 (607)
Q Consensus 401 ~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (607)
.+.+.. +......+....-+..+++|++.|+ +|+++.+..+.++..++..++.+...... .+..........+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-----~~~~~~~~~l~gL 92 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-----GHPLHDLLDLLGL 92 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-----ccchHHHHHHHHH
Confidence 455433 3444444555556677788999987 79999999888888888877765211100 0011111122223
Q ss_pred HHHHHHHhccchhhhhhhccccCcc---chhhHHHHHHHHHHHHHHHHhhhcHHHHHhh-------hhHHHHHHHHHHHH
Q psy10231 479 ANVCASMLGMLQLPWVMIAELFPLS---VRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL-------NMGGMMWAFSCACL 548 (607)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~-------g~~~~~~~~~~~~~ 548 (607)
.++.++..+.-|...+...|.++++ .|.+...+.++..++|+.+++.+.+++.+.. +|...|.+.+++++
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 3333333334455557777877653 4678899999999999999999999887543 47777777777777
Q ss_pred HHHHHhhh
Q psy10231 549 LAMVFIQA 556 (607)
Q Consensus 549 ~~~~~~~~ 556 (607)
++.++...
T Consensus 173 ia~lvf~~ 180 (654)
T TIGR00926 173 LALIVFMA 180 (654)
T ss_pred HHHHHHHH
Confidence 76665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0041 Score=64.13 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=82.1
Q ss_pred hhhhhhhhHHHHHHHHHHhc--c-ch------hHHHHHHHHHhhhhhhHhh-hHhHHhhccCCC---ccccccchhhHHH
Q psy10231 93 TTVQLTAIPFIIGWTIITVS--K-GF------TLLCVGRFITGMAIGMSSA-CYVYVAEICLPN---DRGYLSAFGPVFV 159 (607)
Q Consensus 93 ~~l~~~~~l~~~~~~~~a~a--~-~~------~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~---~r~~~~~~~~~~~ 159 (607)
|+++++.+++.+|.++..++ + +. ..++++-++.++|.|+.-| ..++++|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788889999998884444 2 22 6889999999999999999 999999999876 3567788899999
Q ss_pred HHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHH
Q psy10231 160 SLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAA 192 (607)
Q Consensus 160 ~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~ 192 (607)
++|..++..+..++ +|.+.|.+.++..+++.+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 99999999888888 8999999998887776653
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=59.46 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCCh--HHHHHHHHHHH
Q psy10231 405 LDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNW--IPLACILANVC 482 (607)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 482 (607)
..+.+...++.+..+...+.+-|+.||.|-|..+.++..+.+++..+=........ ++..+ +....-.+...
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v------~~~f~~~l~~~Gq~iaa~ 152 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV------PPLFRRPLTHTGQSIAAA 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc------cccchhhhhHHhHHHHHH
Confidence 34567888888999999999999999999999999999888888765433211100 01122 11121111111
Q ss_pred HHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 483 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
... ....++.-+..-.||+++|++|..+..+...+|..++..+-+.+..+
T Consensus 153 Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 153 AQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 111 11122224555679999999999999999999988887776666543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.033 Score=57.49 Aligned_cols=43 Identities=9% Similarity=-0.101 Sum_probs=32.9
Q ss_pred hhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 491 LPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 491 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
...++-+....+..-|+.+.+.|++.|+|+-.-..+.=++.|.
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 3446667778889999999999999999987766555555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=59.78 Aligned_cols=55 Identities=7% Similarity=-0.062 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhh
Q psy10231 471 WIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKM 526 (607)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i 526 (607)
+..++...+++...+.. .+..+.+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 373 ~~~~~~~~l~gltnGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333332 34455778888888999888888888777777766543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=62.40 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=82.0
Q ss_pred HHHHHHhHhhcccC-----CchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhh
Q psy10231 420 FMAIIGSACIQMFS-----RRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWV 494 (607)
Q Consensus 420 ~~~~~~g~l~d~~g-----rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (607)
...++.|.++|-+. ||+-++++.++..++.+.++..... ..........+++...+... .-.+.-+
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~l~la~~g~a~-~DV~aDa 109 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------ESSAAIAVVLLFLASFGYAF-ADVAADA 109 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------cchhhhHHHHHHHHHHHHHH-HHHhhhH
Confidence 35678899999963 4555566666665555555442110 01112222222222222211 1222334
Q ss_pred hhcccc---CccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q psy10231 495 MIAELF---PLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561 (607)
Q Consensus 495 ~~~e~~---p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (607)
+.+|.. |.+ |+.-.+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+...+..+|.
T Consensus 110 ~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 110 LVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred HHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 555554 444 788888999999999999999999999999888888888777777766666666663
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=48.62 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
+....+......+.+++.+.+.+++|.|+.++++.+...+-...... ...+..+....+.+.+.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHhhhhHHh
Confidence 34455556667778888999999999999999888777655443321 23344555555555555555
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY 527 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 527 (607)
+.+. -.++.+...++.+++-.++...+.+.+..+|..+.
T Consensus 107 W~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 107 WTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5444 36778888888999988888888887777765544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.036 Score=52.36 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=36.6
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHH---------HHhhHHHHhhhHHHHHHHHhhhccc
Q psy10231 256 NDRGYLSAFGPVFVSLGVLIVYSLGY---------IVTWQYTSAACAVVALVGFAAMHAV 306 (607)
Q Consensus 256 ~~r~~~~~~~~~~~~~g~~~~~~~~~---------~~~Wr~~~~~~~i~~~~~~~~~~~~ 306 (607)
|+|+....+...++.+|.++....-. ..+|++.+.+.+++.++-++.+.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888777544311 2259999998888877776666554
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=44.73 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=49.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhH
Q psy10231 382 QEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAF 443 (607)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~ 443 (607)
..+++...+.-|.+.++++.|++.. .+....+..+..+++.++.|.++||.++++.......
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3444567788889999998888654 5778888889999999999999999999887665443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.34 Score=51.05 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=73.4
Q ss_pred HHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC---------CCCC----------CChHHHHHHHH
Q psy10231 419 FFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM---------DDRP----------LNWIPLACILA 479 (607)
Q Consensus 419 ~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----------~~~~~~~~~~~ 479 (607)
++..++.+++++|++|++++...........+++++......+... .... ..|... ...+
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~-~FYv 136 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFA-LFYV 136 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHH-HHHH
Confidence 3347788999999999998887766666666666665433222100 0000 012111 1222
Q ss_pred HHHHHHhccch-hhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy10231 480 NVCASMLGMLQ-LPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532 (607)
Q Consensus 480 ~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 532 (607)
..-.++....+ +-|.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222232333 668999999999999999999999999999999988877663
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.074 Score=57.09 Aligned_cols=117 Identities=17% Similarity=0.059 Sum_probs=69.0
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhh-hhhHHH-HHHHHH----Hhccch-hHHHHHHHHHhhh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL-TAIPFI-IGWTII----TVSKGF-TLLCVGRFITGMA 128 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~-~~~l~~-~~~~~~----a~a~~~-~~l~~~R~l~G~g 128 (607)
-+|.+..+.+.+.+++++|.++|+.+++++.++.-|+...+- ...+.+ ++..+. ++...+ ..+...-++.|+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999988754333322111 111111 111111 111111 2233445667888
Q ss_pred hhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 129 IGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 129 ~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
.|+..| ...+..+.. .++-+...+-......+|.++|.++.+++
T Consensus 124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 888888 666555432 22234556667777777777777776655
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.25 Score=51.40 Aligned_cols=175 Identities=11% Similarity=0.016 Sum_probs=93.9
Q ss_pred hhhhHHHHHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhc
Q psy10231 383 EASGMYIVLYYAVNFFEDAGS-SL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFS 460 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
...+.-...+-.+.++.+... +. ........-.+..++.+...|...||..|.+....+.+..-++...-+..+..-.
T Consensus 14 s~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~ 93 (432)
T PF06963_consen 14 STWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLL 93 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666655422 22 2455666667778888889999999999988766665443333322222111111
Q ss_pred cccCCCCCCChHH---HHHHHHHHHHHHhccchhhhhhhcc------cc--CccchhhHHHHHHHHHHHHHHHHhhhcHH
Q psy10231 461 ELSMDDRPLNWIP---LACILANVCASMLGMLQLPWVMIAE------LF--PLSVRGIMGGIVCSLGYLFIFTTVKMYPD 529 (607)
Q Consensus 461 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e------~~--p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 529 (607)
..........+.. +.....+....-.+ ........| +. +++.....++...-+-.+...++|.+.|.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~La--s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~ 171 (432)
T PF06963_consen 94 SYPSSSSQSSWLFIALFALLILLGAIERLA--SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGL 171 (432)
T ss_pred hCCccccccchHHHHHHHHHHHHHHHHHHH--HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011211 12222222222221 111122211 11 23334555555555556789999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 530 LMYLLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 530 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
+.+..+......+.++..+++..+=++++.
T Consensus 172 l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 172 LMTFASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888888888877665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.81 E-value=2 Score=45.58 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=73.2
Q ss_pred CccchhHHHHHHHH-HhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc---------cc---------------
Q psy10231 60 SSDDASWIASLGVI-STPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS---------KG--------------- 114 (607)
Q Consensus 60 s~~~~~~i~s~~~l-~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a---------~~--------------- 114 (607)
+...+..+=....+ +..+...+..+++++++|.+++-+....+...-.+.++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 34445555554444 455567889999999999999988777777666666653 11
Q ss_pred -------hhHHHHHHHHHhhhhhhHhh--hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 115 -------FTLLCVGRFITGMAIGMSSA--CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 115 -------~~~l~~~R~l~G~g~g~~~~--~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
.|.+.+.-++.-+-.....+ -..+..|.++.++-.|..+++..+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222222222222 356677888888888999999999999998887776655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0018 Score=69.62 Aligned_cols=132 Identities=10% Similarity=-0.082 Sum_probs=0.6
Q ss_pred HhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccc--cC------------
Q psy10231 400 DAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSEL--SM------------ 464 (607)
Q Consensus 400 ~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 464 (607)
..+++. +.+.+....-++.++..++..++.+|..|-+++-.+.++++++.+++++=-+..... ..
T Consensus 32 RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~ 111 (539)
T PF03137_consen 32 RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISS 111 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccc
Confidence 446643 467778888888889999899999888887888888888888888776522111110 00
Q ss_pred --------------------CCCCCChHHHHHHHHHHHHHHh---ccchhhhhhhccccCccchhhHHHHHHHHHHHHHH
Q psy10231 465 --------------------DDRPLNWIPLACILANVCASML---GMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIF 521 (607)
Q Consensus 465 --------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 521 (607)
............+++.....+. ...++..+|+-|..+++..+...|+......+|-.
T Consensus 112 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa 191 (539)
T PF03137_consen 112 NLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPA 191 (539)
T ss_dssp ----------------------------------------SSS-------------------------------------
T ss_pred ccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHH
Confidence 0001111122222222233333 34556678999999999999999999998888877
Q ss_pred HHhhhcHHHH
Q psy10231 522 TTVKMYPDLM 531 (607)
Q Consensus 522 i~~~i~~~l~ 531 (607)
+|-.+.+...
T Consensus 192 ~Gf~lg~~~L 201 (539)
T PF03137_consen 192 LGFLLGSFCL 201 (539)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7766665444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.34 Score=49.70 Aligned_cols=131 Identities=7% Similarity=-0.039 Sum_probs=75.1
Q ss_pred HHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhc
Q psy10231 418 RFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIA 497 (607)
Q Consensus 418 ~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (607)
.++.-+....+.|.++.|++++.+.+...+...++.+ .......-..-++-+..... -...++++-
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~-------------~~sv~~mq~~q~~yg~~~a~-evay~sYiy 119 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF-------------GTSVLAMQLMQFFYGLATAA-EVAYYSYIY 119 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------------HCcHHHHHHHHHHHHHHHHH-HHHHHHHhe
Confidence 4445566777899999999999988877777666554 12222222222222222111 223346666
Q ss_pred cccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh--hhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 498 ELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL--LNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 498 e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
...|++.--++.+......-+|..++..+.-.+... ..+.....+..+...++.++ .+++|..++
T Consensus 120 s~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~fLP~~~~ 186 (412)
T PF01770_consen 120 SVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-ALFLPMPKR 186 (412)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence 666777777888888888877777777666655542 23333333333333333333 445676544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.79 Score=44.75 Aligned_cols=141 Identities=13% Similarity=-0.005 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCC
Q psy10231 390 VLYYAVNFFEDAGSSL---DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDD 466 (607)
Q Consensus 390 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.....+.+..+.+.+. ..........+...++.++.|.+.||.|||+.+..+.....++.+...+.. .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------~ 91 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------N 91 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---------c
Confidence 3344455555444332 245566666677777779999999999999777766654333333332210 0
Q ss_pred CCCChHHHHHHHHHHHHHHhccchhhhhhhccccCc-cchhhHHHHHHH-HHHHHHHHHhhhcHHHHHh--hhhHHHHH
Q psy10231 467 RPLNWIPLACILANVCASMLGMLQLPWVMIAELFPL-SVRGIMGGIVCS-LGYLFIFTTVKMYPDLMYL--LNMGGMMW 541 (607)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~~~~i~~~i~~~l~~~--~g~~~~~~ 541 (607)
...+........ .........+....+..|.+|. +.|+...+.... ...++..+++.+.+.+... .+|+..+.
T Consensus 92 -~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 92 -VGLALLLILRLL-QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred -chHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 011222222221 2222223446666888999987 668888888777 4667777777666555544 34554333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.58 E-value=3.6 Score=42.93 Aligned_cols=126 Identities=10% Similarity=0.128 Sum_probs=88.0
Q ss_pred cccccccCCCccccc---CccchhHHHHHHHH-HhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc--------
Q psy10231 45 ILIPQLQKPSSIISI---SSDDASWIASLGVI-STPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS-------- 112 (607)
Q Consensus 45 ~~~p~l~~~~~~~~~---s~~~~~~i~s~~~l-~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a-------- 112 (607)
..+-.+++ .+-+ .+..+.++=+...+ +..+..++.+++.+++.|.+++-+-+..+...-+++++.
T Consensus 44 ~~lR~lKD---slvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~ 120 (509)
T COG3202 44 NLLRSLKD---SLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDIL 120 (509)
T ss_pred HHHHHhhh---heEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33445555 5543 45567777777777 788889999999999999999998888888888888764
Q ss_pred -cc-----------------------hhHHHHHHHHHhhhhhhHhh--hHhHHhhccCCCccccccchhhHHHHHHHHHH
Q psy10231 113 -KG-----------------------FTLLCVGRFITGMAIGMSSA--CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 166 (607)
Q Consensus 113 -~~-----------------------~~~l~~~R~l~G~g~g~~~~--~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig 166 (607)
++ .|...+.-++.=+=...... -.....|.+..++-.|..++++.+.+++..++
T Consensus 121 hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~llls 200 (509)
T COG3202 121 HPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLS 200 (509)
T ss_pred CCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 11 02222222222222223332 34556788888888999999999999999998
Q ss_pred HHHhhhh
Q psy10231 167 YSLGYIV 173 (607)
Q Consensus 167 ~~l~~~l 173 (607)
+.+..++
T Consensus 201 g~~~~~~ 207 (509)
T COG3202 201 GEVTSWL 207 (509)
T ss_pred HHHHHHH
Confidence 8888777
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=56.38 Aligned_cols=164 Identities=12% Similarity=-0.018 Sum_probs=100.5
Q ss_pred hCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhh--ccc---c-------C---
Q psy10231 401 AGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYF--SEL---S-------M--- 464 (607)
Q Consensus 401 ~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~---~-------~--- 464 (607)
.+++. ..+++...+-++..+...+..+...|..|-+++-.+.++++++.++.++--+.. +.. . .
T Consensus 127 F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~ 206 (735)
T KOG3626|consen 127 FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSS 206 (735)
T ss_pred cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccc
Confidence 34433 355566666777788888888888888888888888899988888776531111 000 0 0
Q ss_pred ------------------CC---CCC---ChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHH
Q psy10231 465 ------------------DD---RPL---NWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFI 520 (607)
Q Consensus 465 ------------------~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 520 (607)
+. ... .+..+++.-++.+.+.....++...|+-|...++......|+.+.+.-+|-
T Consensus 207 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGP 286 (735)
T KOG3626|consen 207 LSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGP 286 (735)
T ss_pred cchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhh
Confidence 00 011 122222222233333333456666899999999988999999999888887
Q ss_pred HHHhhhcHHHHHh------------------hh-hHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy10231 521 FTTVKMYPDLMYL------------------LN-MGGMMWAFSCACLLAMVFIQAFLPETQGKT 565 (607)
Q Consensus 521 ~i~~~i~~~l~~~------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (607)
++|-.+.+..... .| |..-|.+.+.+.++.++..+ ++|++.+++
T Consensus 287 aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f-~fPk~lp~~ 349 (735)
T KOG3626|consen 287 AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF-FFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCcccCccc
Confidence 7776666655431 12 33355566666666666644 457665554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.6 Score=44.75 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=73.3
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCC------------C--------ChHHHHH
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRP------------L--------NWIPLAC 476 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--------~~~~~~~ 476 (607)
..++...+..++++++++.++.............++++..+...+. .+.+. - .|....
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~-lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~sl- 148 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDI-LHPDAFADKLLAILPPGFKGFIAMFRNWTFSL- 148 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhh-cCCCHHHHHhhhhccchHHHHHHHHHHHHHHH-
Confidence 3455667788999999999988777766666666666654332221 11111 0 011111
Q ss_pred HHHHHHHHHhccch-hhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy10231 477 ILANVCASMLGMLQ-LPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMY 532 (607)
Q Consensus 477 ~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 532 (607)
..+..-..+....+ +-|.++.|.++.++..+-.++....++++..+++.+...+.+
T Consensus 149 fYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 149 FYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222 457899999999999999999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.32 Score=50.13 Aligned_cols=118 Identities=8% Similarity=-0.173 Sum_probs=75.7
Q ss_pred hhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCcc---chhhHHHHH
Q psy10231 436 ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS---VRGIMGGIV 512 (607)
Q Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~ 512 (607)
+.+..+.++..++.+++.+....... ++........+.+.+ ...+..+.=|....+.+|.++++ .|.+.....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~---~~~~~~~~~~~gL~l-ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL---PSGIQLGLFYIGLAL-IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHH-HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh---hhhHHHHHHHHHHHH-HHhccccccccHHHHHHHHhcccchhhhhhhHHHH
Confidence 45667777788887775553332211 111122233333333 33333344466667888888765 467788889
Q ss_pred HHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 513 CSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 513 ~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
+...++|+.++..+.+++.++.||...|.+.++..+++.+..+..
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998988888888777665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.048 Score=55.65 Aligned_cols=157 Identities=10% Similarity=-0.000 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc----cCCchhHH-HhhH
Q psy10231 370 KPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQM----FSRRALAT-TSAF 443 (607)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~l~-~~~~ 443 (607)
+.++....+.+..++. ...-..|.+.++++.|.+.. .+......-+.+++..++.|..+|| +||||..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444444444443 45667788888888888554 4555555667788889999999998 68776655 4445
Q ss_pred HHHHHHHHHhhhhhhhccccCCCCCCC--hHHHHHHHHH---HHHHHhccchhhhhhhccccCccchhh-HHHHHHHHHH
Q psy10231 444 FMALSMGISGTYEYYFSELSMDDRPLN--WIPLACILAN---VCASMLGMLQLPWVMIAELFPLSVRGI-MGGIVCSLGY 517 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~ 517 (607)
...+++++++...........+...+. ..+...++.+ -........| .=++..|+...+.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHH
Confidence 555666655543222111111111111 1111111111 1111122223 3377888887777777 8888888888
Q ss_pred HHHHHHhhhcH
Q psy10231 518 LFIFTTVKMYP 528 (607)
Q Consensus 518 ~~~~i~~~i~~ 528 (607)
+|+.++-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88877655443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=4.8 Score=43.39 Aligned_cols=49 Identities=20% Similarity=0.100 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcHHHHH-hhhhHHHHHHHHHHHHHHHHH
Q psy10231 505 RGIMGGIVCSLGYLFIFTTVKMYPDLMY-LLNMGGMMWAFSCACLLAMVF 553 (607)
Q Consensus 505 r~~~~g~~~~~~~~~~~i~~~i~~~l~~-~~g~~~~~~~~~~~~~~~~~~ 553 (607)
-+...|-.+.+..+|+++|+.+.+.++- ..|.....++.+.+.++.+++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999887765 566655555555555544443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.037 Score=55.30 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=2.2
Q ss_pred chhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhh
Q psy10231 489 LQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKM 526 (607)
Q Consensus 489 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i 526 (607)
.+..+.+.++..+++.|..+..+...+-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888888888888777777777766665543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.25 Score=50.53 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=86.3
Q ss_pred ccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHH--HH---HHHHHHhccchhHH
Q psy10231 44 SILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPF--II---GWTIITVSKGFTLL 118 (607)
Q Consensus 44 ~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~--~~---~~~~~a~a~~~~~l 118 (607)
..+.|.+.-.. ++.-..++..+....|.+|-.++.--...+ |+ |++.+.+.+-. .+ .....-+.+|.|..
T Consensus 264 qGv~~tl~fp~-~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~iv 338 (402)
T PF02487_consen 264 QGVAPTLLFPN-SFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIV 338 (402)
T ss_pred hchHHHhcCCc-cCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445444321 233345677788888887766653322111 33 44444333322 22 22222345889999
Q ss_pred HHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh
Q psy10231 119 CVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173 (607)
Q Consensus 119 ~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l 173 (607)
++.-+..|+..|..+. ....+.|-.++++|...++...++-++|..++..++-.+
T Consensus 339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999888765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=92.26 E-value=15 Score=37.74 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHhhhhhhHhh-hHhHHhhcc
Q psy10231 114 GFTLLCVGRFITGMAIGMSSA-CYVYVAEIC 143 (607)
Q Consensus 114 ~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~ 143 (607)
.|...++.-++.|++.|.... .....+++-
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P 146 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLFP 146 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcCC
Confidence 366777778888888888877 555555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.2 Score=44.74 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHhhcccCC
Q psy10231 416 GLRFFMAIIGSACIQMFSR 434 (607)
Q Consensus 416 ~~~~~~~~~~g~l~d~~gr 434 (607)
+.+++..+....+..|+..
T Consensus 56 v~~l~~~~~~~~~~~~i~~ 74 (437)
T TIGR00939 56 LPSLLFNSLNLFLIFRIPV 74 (437)
T ss_pred HHHHHHHHHHHHHhhccCc
Confidence 3344444455555566554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.80 E-value=17 Score=38.13 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCC----------CC-C----------hHHHH
Q psy10231 417 LRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDR----------PL-N----------WIPLA 475 (607)
Q Consensus 417 ~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~----------~~~~~ 475 (607)
..++..++..+++++..+.++...-........+++++..+...+.. +.+ .+ . |....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~-hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~ 152 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDIL-HPDPEFSRDLFADLPMFLKWFILIVGEWSYSL 152 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCCHHHHHHHHhhCCccceeeeEeecchHHHH
Confidence 45677788889999999998887776666666777776655322211 111 01 1 22222
Q ss_pred HHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh
Q psy10231 476 CILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
.....-........-+-|..+.|....++..+-.++.+...+++..++..+..++.++
T Consensus 153 ~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 153 FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2221111112222224567889999999999999999999999999988888777653
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=4.6 Score=41.29 Aligned_cols=60 Identities=0% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcchHH----HHHHHHHHHHHHHHHHhHhhcc
Q psy10231 372 FFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYV----ASIIVAGLRFFMAIIGSACIQM 431 (607)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~ 431 (607)
....+++.........+.+.+-.+++.........+.. ......+..++..+.-.++..|
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444556666666666554322222222 2222333444445555555555
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=89.22 E-value=5.7 Score=41.62 Aligned_cols=106 Identities=8% Similarity=-0.102 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhc
Q psy10231 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLG 487 (607)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (607)
+....+......+.+++++.+.|+++.|..+.++........+.+.. .+.+..++...+.+.+.+..
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-------------~N~y~~yfssallG~Gaall 119 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-------------PNSYYLYFSSALLGFGAALL 119 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-------------cchHHHHHHHHHhhhhHHhe
Confidence 34466777788889999999999999999999888777666655433 34566666666667766665
Q ss_pred cchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhc
Q psy10231 488 MLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMY 527 (607)
Q Consensus 488 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~ 527 (607)
+.... .+.+|...++.+.+-.++...+...+.++|..+.
T Consensus 120 w~GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 120 WTGQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred ecccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 54443 7889999999999999999999988887775443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=89.15 E-value=3 Score=32.26 Aligned_cols=66 Identities=15% Similarity=-0.035 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhh
Q psy10231 389 IVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGT 454 (607)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~ 454 (607)
.+.-.+|...++.+.+.+ .+.......++.++|.+...++.++..+++.+..+.+...+..+.+++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778788777654 677888899999999999999999988888888888888888877766
|
Note that many members are hypothetical proteins. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=81.83 E-value=27 Score=38.13 Aligned_cols=149 Identities=9% Similarity=-0.046 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhhhhhhhcccc------CC----CCCCCh-HHH
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGTYEYYFSELS------MD----DRPLNW-IPL 474 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~-~~~ 474 (607)
+......++.......+.+++++|- .||-+...++.++..+++.++......+.... .. ...... ..+
T Consensus 75 aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~ 154 (571)
T KOG1237|consen 75 AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAV 154 (571)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHH
Confidence 3444455555666777889999998 47888888888888887766665544443210 00 000111 111
Q ss_pred HHHHHHHH-HHHhccchhhhhhhccccCc----cch--hhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHH
Q psy10231 475 ACILANVC-ASMLGMLQLPWVMIAELFPL----SVR--GIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCAC 547 (607)
Q Consensus 475 ~~~~~~~~-~~~~~~~~~~~~~~~e~~p~----~~r--~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~ 547 (607)
+...+... ....+.-|....+-+|-++. +.+ ..-+.......+.|..++..+..+..++.+|...|.+..+..
T Consensus 155 ~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~ 234 (571)
T KOG1237|consen 155 LYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLN 234 (571)
T ss_pred HHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHH
Confidence 11111111 12223344444666777762 222 356667777778888888888888888888888887777776
Q ss_pred HHHHHHhh
Q psy10231 548 LLAMVFIQ 555 (607)
Q Consensus 548 ~~~~~~~~ 555 (607)
.++.++..
T Consensus 235 ~lai~iF~ 242 (571)
T KOG1237|consen 235 ALAILIFL 242 (571)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.66 E-value=10 Score=39.89 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=17.6
Q ss_pred HhHhhcccCCchhHHH-hhHHHHHHHHHHhh
Q psy10231 425 GSACIQMFSRRALATT-SAFFMALSMGISGT 454 (607)
Q Consensus 425 ~g~l~d~~grr~~l~~-~~~~~~~~~~~~~~ 454 (607)
=...+.|+||||..++ .-.+.++.++.++.
T Consensus 60 Ds~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~ 90 (544)
T PF13000_consen 60 DSVYSKRIGRRKSWIIPIQYLSGILMLYLSY 90 (544)
T ss_pred hhhcccccCCcchhhhHHHHHHHHHHHHHHh
Confidence 3445678999886554 33455555555444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=81.36 E-value=2.9 Score=40.79 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhHHhhc
Q psy10231 64 ASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEI 142 (607)
Q Consensus 64 ~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~ 142 (607)
.|.+.-+-.+-..+--+-...+.||+---.=..+..++.+.+.++.++++|.++=+.+-.+..++.|.--. -..+. ..
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SR 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-cc
Confidence 44444455555556666667778876433334455667777888889999999999998888888887666 33332 22
Q ss_pred cCCCccccccchhhHHHHHHHHHHH
Q psy10231 143 CLPNDRGYLSAFGPVFVSLGVLIVY 167 (607)
Q Consensus 143 ~~~~~r~~~~~~~~~~~~lG~~ig~ 167 (607)
++ ....+.|..+.+...++|.
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa 163 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGA 163 (409)
T ss_pred CC----CceeccccCCCCcchhhhh
Confidence 32 3344555555444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 607 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-25 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.28 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.26 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.21 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.2 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.11 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.04 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.75 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=389.85 Aligned_cols=428 Identities=25% Similarity=0.392 Sum_probs=328.0
Q ss_pred hhccccccccccccccccCCCccc--------ccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSII--------SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIG 105 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~--------~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 105 (607)
+++|+|.+..+..+|.+++ ++ +.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.++
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4578888888888888876 44 334556899999999999999999999999999999999999999999
Q ss_pred HHHHH------------------hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHH
Q psy10231 106 WTIIT------------------VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 166 (607)
Q Consensus 106 ~~~~a------------------~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig 166 (607)
+++++ +++|+++++++|+++|+|.|+..+ +.++++|+.|+++|++..++.+.+..+|.+++
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 99999 478999999999999999999999 99999999999999999999999999999988
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHH
Q psy10231 167 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACY 246 (607)
Q Consensus 167 ~~l~~~l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 246 (607)
+.++.... . ..+..
T Consensus 179 ~~~~~~~~----------------~---~~~~~----------------------------------------------- 192 (491)
T 4gc0_A 179 YCVNYFIA----------------R---SGDAS----------------------------------------------- 192 (491)
T ss_dssp HHHHHHHH----------------T---TSCTT-----------------------------------------------
T ss_pred hhcchhhc----------------c---ccccc-----------------------------------------------
Confidence 77665430 0 00000
Q ss_pred HHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHH
Q psy10231 247 VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSL 326 (607)
Q Consensus 247 ~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l 326 (607)
......||..+.+..+++++.++..+++||||+|+..+++.+++++.+
T Consensus 193 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 193 --------------------------------WLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp --------------------------------TTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------cccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 000124555566666666666668889999999999999999999988
Q ss_pred HHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc
Q psy10231 327 VWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD 406 (607)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (607)
++.++++...++..+ .++..+++++. ......++ .++.........++++.+.+.+..|.+.+.+..+.+..
T Consensus 241 ~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4gc0_A 241 RKIMGNTLATQAVQE-IKHSLDHGRKT---GGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHH---TTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHhcCCchhHHHHHH-HHHHHHhhhhh---hhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence 877654433222211 11111111111 11111121 22355566667777888889999999999888776443
Q ss_pred -hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHH
Q psy10231 407 -DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASM 485 (607)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (607)
......+.++..+++.++++++.||+|||+.++.+.....++++.++..... ....+..+...+.+...+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--------QAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999888888877776654322 1334455566666677777
Q ss_pred hccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh------hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 486 LGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL------LNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 486 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
.+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+. .+....|++++++++++.++.++++|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 888889999999999999999999999999999999999888876543 34455788999999999999999999
Q ss_pred CCCCCCHHHHHHHhhccCC
Q psy10231 560 ETQGKTLLEIENHFRGKKN 578 (607)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (607)
|||+|++||+|+.++++++
T Consensus 465 ETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETK 483 (491)
T ss_dssp CCTTCCHHHHGGGTC----
T ss_pred CCCCCCHHHHHHHhCCCCc
Confidence 9999999999888765543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=300.24 Aligned_cols=379 Identities=13% Similarity=0.076 Sum_probs=278.0
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh--
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV-- 111 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~-- 111 (607)
++.+++.....+.+|.+.+ ++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 113 (451)
T 1pw4_A 38 AAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 113 (451)
T ss_dssp HHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566667788888888 88 99999999999999999999999999999999999999999999999999999
Q ss_pred --ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h-HHHHHHHhH
Q psy10231 112 --SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T-WQYTSAACA 183 (607)
Q Consensus 112 --a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~-Wr~~f~~~~ 183 (607)
++|++.++++|+++|++.+...+ ..+++.|++|+++|++++++...+.++|.++++.+++.+ + ||+.|++.+
T Consensus 114 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 114 WATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp HHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred hccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999875 7 999999999
Q ss_pred HHHHHHHHH-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccccc
Q psy10231 184 VVALVGFAA-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLS 262 (607)
Q Consensus 184 ~~~~~~~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~ 262 (607)
++.++..++ .+++||+|+....+..++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 221 (451)
T 1pw4_A 194 FCAILVALFAFAMMRDTPQSCGLPPIEE---------------------------------------------------- 221 (451)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCCCSCTT----------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCHhhcCCCChhh----------------------------------------------------
Confidence 888776554 355677654321111000
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHH
Q psy10231 263 AFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE 342 (607)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (607)
..+.++. +
T Consensus 222 -----------------------------------------------------~~~~~~~----------------~--- 229 (451)
T 1pw4_A 222 -----------------------------------------------------YKNDYPD----------------D--- 229 (451)
T ss_dssp -----------------------------------------------------TCCC-----------------------
T ss_pred -----------------------------------------------------hcccccc----------------c---
Confidence 0000000 0
Q ss_pred HHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHH
Q psy10231 343 IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~ 420 (607)
. ++.++++........++.++++..+.. .+..+......+....+.|.++++ .|.+.. .........++.++
T Consensus 230 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 230 Y-NEKAEQELTAKQIFMQYVLPNKLLWYI-----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred c-hhhhhcccccccchHHHHHcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 000000001111113455555544332 222223333466778888998876 566543 46677778889999
Q ss_pred HHHHHhHhhccc--CCchhHHHhhHHHH-HHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhc
Q psy10231 421 MAIIGSACIQMF--SRRALATTSAFFMA-LSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIA 497 (607)
Q Consensus 421 ~~~~~g~l~d~~--grr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (607)
+.++.+++.||+ +||+.+..+..+.. ++.+++... .....+.......+.+ .+.....+..+.+..
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIG-FLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHH-HHHhchHHHHHHHHH
Confidence 999999999999 99988877666555 444443321 1112223333333322 223334455568899
Q ss_pred cccCccchhhHHHHHHHHHHH-HHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 498 ELFPLSVRGIMGGIVCSLGYL-FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 498 e~~p~~~r~~~~g~~~~~~~~-~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
|.+|++.|+++.|+.+.+.++ +..+++.+.|.+.+..|+...|++.+++.+++.++..+.
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999888888888888777665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=281.92 Aligned_cols=354 Identities=13% Similarity=0.078 Sum_probs=264.5
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH---H
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII---T 110 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---a 110 (607)
++.+++....++.+|.+.+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666777888999988 999999999999999999999999999999999999999999999999999999 8
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhh---------------
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--------------- 174 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~--------------- 174 (607)
+++|++.++++|+++|++.+...+ ..+++.|++|+++|++++++.+.+.++|..+++.+++.+.
T Consensus 113 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 999999999999999999999999 9999999999999999999999999999999999988762
Q ss_pred ---------------HHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhc
Q psy10231 175 ---------------WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAI 239 (607)
Q Consensus 175 ---------------Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (607)
||+.|++.+++.++..+.
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~----------------------------------------------- 225 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL----------------------------------------------- 225 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 666665555444443331
Q ss_pred chhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCCh
Q psy10231 240 GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCT 319 (607)
Q Consensus 240 g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~ 319 (607)
+.....||+++. +++.
T Consensus 226 -------------------------------------------------------------~~~~~~p~~~~~---~~~~ 241 (438)
T 3o7q_A 226 -------------------------------------------------------------IMLTKFPALQSD---NHSD 241 (438)
T ss_dssp -------------------------------------------------------------HHHCCCCCCTTT---CCCC
T ss_pred -------------------------------------------------------------HHHHcCCccccc---cccc
Confidence 122234554320 0000
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHH-H
Q psy10231 320 KEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNF-F 398 (607)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 398 (607)
+ ++.+...++++.+++|..+...+..+ ...........|.|.+ +
T Consensus 242 ~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 242 A------------------------------KQGSFSASLSRLARIRHWRWAVLAQF-----CYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp S------------------------------STTSHHHHHHHHTTCSHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------cccchhhhHHHHHhChHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Confidence 0 00111234456677776554332222 2222356677888888 7
Q ss_pred HHh-CCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHH
Q psy10231 399 EDA-GSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLAC 476 (607)
Q Consensus 399 ~~~-g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
++. |.+.. .........++.+++.++.+++.||++||+.+..+..+..++.+++... ........
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 353 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHVGLIA 353 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcHHHHH
Confidence 765 66543 5667777888899999999999999999999988887777776655441 12222223
Q ss_pred HHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHH
Q psy10231 477 ILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMV 552 (607)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~ 552 (607)
..+.. .+.....+..+.+..|.+|++ ++.+.++.. .+.++..++|.+.|.+.+..| +...|++.+++.++..+
T Consensus 354 ~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 354 LTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333 333344577778888999977 888888877 778999999999999999998 88777765554444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=261.32 Aligned_cols=413 Identities=11% Similarity=0.001 Sum_probs=244.1
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~ 134 (607)
|+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 499999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred -hHhHHhhccCCCc--cccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcC-CCChhhHhhc
Q psy10231 135 -CYVYVAEICLPND--RGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAV-PETPSWLARQ 206 (607)
Q Consensus 135 -~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~-pes~~~~~~~ 206 (607)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+.. .++
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~ 204 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL---DPH 204 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc---ccc
Confidence 9999999999988 77788889999999999999999887 89999999887776665543322 2211 000
Q ss_pred cccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhH
Q psy10231 207 GMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQ 286 (607)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr 286 (607)
++..+.-....+ .....+
T Consensus 205 ~~~~~~~~~~~~--------------------------------------------------------------~~~~~~ 222 (491)
T 4aps_A 205 YLRPTDPLAPEE--------------------------------------------------------------VKPLLV 222 (491)
T ss_dssp CSCCSCCCSHHH--------------------------------------------------------------HHHHHH
T ss_pred ccCCCCccccch--------------------------------------------------------------hHHHHH
Confidence 000000000000 000001
Q ss_pred HHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccC
Q psy10231 287 YTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNS 366 (607)
Q Consensus 287 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (607)
.........++..+..... + +.+.++......... ........ .+. .+...... ..+++
T Consensus 223 ~~g~~l~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~-----~~~~~~~~---~~~--~~~~~~~~--~~~~~ 281 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLV--G-------WNSLPAYINLLTIVA-----IAIPVFYF---AWM--ISSVKVTS--TEHLR 281 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHH--S-------SCCTTHHHHHHHHHH-----HHHHHHHH---HHH--C--------------
T ss_pred HHHHHHHHHHHHHHHHHhc--c-------CcccccchhhhhHHH-----HHHHHHHH---HHH--hhcccccH--HHHHH
Confidence 1000011111111111000 0 000000000000000 00000000 000 00000000 00111
Q ss_pred cch-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCC-cchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHH----
Q psy10231 367 AVW-KPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSS-LDDYVASIIVAGLRFFMAIIGSACIQMFSRRALAT---- 439 (607)
Q Consensus 367 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~---- 439 (607)
... ........+.. ........+.+.+.++ .+.+ ...........+..+++.++.+++.||++||+...
T Consensus 282 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 282 VVSYIPLFIAAVLFW----AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp CTTHHHHHHHHHHHH----HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 111 11111111111 1223334455666654 2443 34555666677778888999999999999986544
Q ss_pred -HhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHH
Q psy10231 440 -TSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYL 518 (607)
Q Consensus 440 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 518 (607)
.+..+.+++.+++........ ...+...+.......+.+. ......+..+.++.|.+|++.|+++.|+.+...++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 433 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYG---TSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV 433 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCC---CCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444555454444333211100 0111233333333333333 33334567778999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 519 FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 519 ~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
|..+++.+.+.+.+. ++...+..++.+++++.++.+++.++.++
T Consensus 434 g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 434 GSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877654 56667888888888877777766665544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=256.39 Aligned_cols=344 Identities=14% Similarity=0.100 Sum_probs=248.2
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK 113 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~ 113 (607)
++.+++.....+.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc
Confidence 4455666677788888888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 114 GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 114 ~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
|++.+++.|+++|++.+...+ ..+++.|++|+++|+++.++...+..+|..+++.+++.+ +||+.|++.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999887 899999988888776
Q ss_pred HHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHH
Q psy10231 189 GFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVF 268 (607)
Q Consensus 189 ~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~ 268 (607)
..+.
T Consensus 167 ~~~~---------------------------------------------------------------------------- 170 (375)
T 2gfp_A 167 VTFS---------------------------------------------------------------------------- 170 (375)
T ss_dssp HHCC----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 6552
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy10231 269 VSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLK 348 (607)
Q Consensus 269 ~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (607)
..+.+||+++. +++
T Consensus 171 ---------------------------------~~~~~~~~~~~---~~~------------------------------ 184 (375)
T 2gfp_A 171 ---------------------------------MARWMPETRPV---DAP------------------------------ 184 (375)
T ss_dssp ---------------------------------CCCSSCCCSTT---TCC------------------------------
T ss_pred ---------------------------------HHHHCcccCCC---Ccc------------------------------
Confidence 23334444321 000
Q ss_pred HhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHHHHh
Q psy10231 349 VQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAIIGS 426 (607)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g 426 (607)
+++...++++.+++|+.+...+. .+...........+.|.++++ .|.+. ..+.......++.+++.++.+
T Consensus 185 ---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 185 ---RTRLLTSYKTLFGNSGFNCYLLM-----LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp ---CCCTTTCSTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHhcCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112233455555544432222 222233355666777777665 45533 345566677788888999999
Q ss_pred HhhcccCCchhHHHhhHH-HHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccch
Q psy10231 427 ACIQMFSRRALATTSAFF-MALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVR 505 (607)
Q Consensus 427 ~l~d~~grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 505 (607)
++.||.+++ ...+... ...+...+... .... .+.+.......+...+.+ ...+....+..|.+| +.|
T Consensus 257 ~l~~r~~~~--~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~ 324 (375)
T 2gfp_A 257 RPNKRFSTL--MWQSVICCLLAGLLMWIPD-WFGV-------MNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLA 324 (375)
T ss_dssp TTTTHHHHH--HHHHHHHHHHTSSSSSHHH-HHHH-------HHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHh-hhcc-------ccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-ccc
Confidence 999998772 2222222 11111111100 0000 112222233333333333 345667788999998 889
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHH
Q psy10231 506 GIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542 (607)
Q Consensus 506 ~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~ 542 (607)
+++.|+.+...+++..+++.+.+.+.+..++...+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999999999999999999999887777655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=241.40 Aligned_cols=366 Identities=13% Similarity=0.074 Sum_probs=227.8
Q ss_pred ccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH---HHHHhccch-
Q psy10231 41 AIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW---TIITVSKGF- 115 (607)
Q Consensus 41 ~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~---~~~a~a~~~- 115 (607)
+...+.+|. +++ ++|.++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+++++..
T Consensus 24 ~~~~~~~~~~l~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 24 GAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHTTTHHHHHHT---TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344554 445 789999999999999999999999999999999999999998887765532 212233221
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCC--CccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLP--NDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVVALVG 189 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~~~~~ 189 (607)
..+...|++.|++.+...+ ....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 1234567777777766665 55555555443 3557666777666777888888887766 7999999877765544
Q ss_pred HHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHH
Q psy10231 190 FAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFV 269 (607)
Q Consensus 190 ~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~ 269 (607)
.+..++.||
T Consensus 181 ~~~~~~~~~----------------------------------------------------------------------- 189 (417)
T 2cfq_A 181 AVLLFFAKT----------------------------------------------------------------------- 189 (417)
T ss_dssp HHHSCSSCC-----------------------------------------------------------------------
T ss_pred HHHHHHcCc-----------------------------------------------------------------------
Confidence 442222222
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy10231 270 SLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKV 349 (607)
Q Consensus 270 ~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (607)
|+|+ +.+.++. .+ +
T Consensus 190 --------------------------------------~~~~----~~~~~~~---------~~---------------~ 203 (417)
T 2cfq_A 190 --------------------------------------DAPS----SATVANA---------VG---------------A 203 (417)
T ss_dssp --------------------------------------CCSC----SSCSSSS---------SS---------------S
T ss_pred --------------------------------------cccc----ccccccc---------cc---------------c
Confidence 2110 0000000 00 0
Q ss_pred hhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCC---c-chHHHHHHHHHHHHHHHHH
Q psy10231 350 QMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSS---L-DDYVASIIVAGLRFFMAII 424 (607)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~-~~~~~~~~~~~~~~~~~~~ 424 (607)
++++....++++.+++++.+...+..+... ..+.....+.|.++.+. +.. . .......+..+..+++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 278 (417)
T 2cfq_A 204 NHSAFSLKLALELFRQPKLWFLSLYVIGVS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFF 278 (417)
T ss_dssp CCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhcCCchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 000011122345566665443222211111 12233344566666542 211 1 1233445556677888999
Q ss_pred HhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc
Q psy10231 425 GSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 425 ~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
.+++.||+|||+.+..+..+.++..+.+++. ...+..+....+..... ....+..+.++.|.+|++.
T Consensus 279 ~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHH
Confidence 9999999999998887777776665554331 11222222222222221 2223344688999999999
Q ss_pred hhhHHHHH-HHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy10231 505 RGIMGGIV-CSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 505 r~~~~g~~-~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (607)
|+++.++. +...++|+.++|.+.|.+.+..|+...|.+.+++++++.++.++..||+++.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 99999995 7888899999999999999988888888888888888887776666765543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=240.07 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=131.7
Q ss_pred cccccccCCCcccc------cCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhhhhhHHHHHHHHHHhcc-chh
Q psy10231 45 ILIPQLQKPSSIIS------ISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQLTAIPFIIGWTIITVSK-GFT 116 (607)
Q Consensus 45 ~~~p~l~~~~~~~~------~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~a~a~-~~~ 116 (607)
.+.+.+.+ ++| .+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+++++++ |++
T Consensus 34 ~l~~~l~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 34 ILTPFLMT---ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHH---SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHH---HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 33344566 677 9999999999999999999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccch---hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAF---GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~---~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
.++++|+++|++.+...+ ..+++.|++|+++|+++.+. ...+.++|..++|.+++.+ +||+.|++.++..++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999877666 8899999999999998877 899999998888766
Q ss_pred HHHHH
Q psy10231 189 GFAAM 193 (607)
Q Consensus 189 ~~~~~ 193 (607)
..+..
T Consensus 191 ~~~~~ 195 (524)
T 2xut_A 191 ATVFF 195 (524)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=128.50 Aligned_cols=181 Identities=12% Similarity=-0.069 Sum_probs=133.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHH
Q psy10231 373 FILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGI 451 (607)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~ 451 (607)
+....+..+...........+.|.+.++. .+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333444444434445566677777666 543 4677888888999999999999999999999999999988888877
Q ss_pred HhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH
Q psy10231 452 SGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 531 (607)
.++.... . ...+..+....+.+.+.+ ...+...+++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.
T Consensus 109 ~~~~~~~-~-------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 109 MGFVPWA-T-------SSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHCHHH-H-------SSSSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHhhhhc-c-------ccHHHHHHHHHHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652110 0 233344444333333333 345666789999999999999999999999999999999999988
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 532 YLLN-MGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 532 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+..| |+..|++.+.++++..++.++.+||+++
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 8888 9999999888888877777777777654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-10 Score=118.23 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=121.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 378 FFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
+..+.............|.+.++.|.+.. .+.......++..++.++.|+++||+|||+.+..+.++.+++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444446667777888788887654 57778888889999999999999999999999999998888887763211
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH-Hhhh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM-YLLN 535 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~-~~~g 535 (607)
.. ...+..+...++.+.+ .....+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 113 ~~---------~~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 113 EI---------MNYTLFLVGLFIIAAG-LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HT---------TCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred cc---------ccHHHHHHHHHHHHhh-HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11 2223333333333333 33345666789999999999999999999999999999999999888 4433
Q ss_pred -------------------------hHHHHHHHHHHHHHHHHHhh
Q psy10231 536 -------------------------MGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 536 -------------------------~~~~~~~~~~~~~~~~~~~~ 555 (607)
|+..|++.+.+.++..++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77788777766665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-10 Score=118.63 Aligned_cols=164 Identities=9% Similarity=-0.090 Sum_probs=122.1
Q ss_pred hhhhHHHHHHHHHHHHHH------hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhh
Q psy10231 383 EASGMYIVLYYAVNFFED------AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGT 454 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~ 454 (607)
...+++....+.+.++++ .|.+.. .+.......++..++.++.|+++|| +|||+.+..+..+..++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~ 104 (491)
T 4aps_A 25 ERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 333456666777777765 466543 5677788889999999999999999 89999999999888888877665
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc--hhhHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy10231 455 YEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV--RGIMGGIVCSLGYLFIFTTVKMYPDLMY 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 532 (607)
. .+.+..+....+.+.+. ....+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+
T Consensus 105 ~------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 105 P------------FGASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp C------------CSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h------------hhHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22333333333333333 3345666789999999988 7788888999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 533 LLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 533 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
..||+..|++.+...+++.+...+..|
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999998887777666665544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=119.07 Aligned_cols=165 Identities=9% Similarity=-0.080 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC
Q psy10231 386 GMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM 464 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.........|.+.++.|.+.. .+.......+...++.++.|+++||+|||+.+..+.....++.+......
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-------- 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--------
Confidence 345555666777777776544 56677888889999999999999999999999999888888887766521
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHH
Q psy10231 465 DDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~ 544 (607)
+.+..+... ...........+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+.+..+|+..+++.+
T Consensus 87 ----~~~~l~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 87 ----SLTVLIAAS-AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ----cHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 112222222 222333333456667889999999999999999999999999999999999999889999999888
Q ss_pred HHHHHHHHHhhhcccCCCC
Q psy10231 545 CACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (607)
...++..+...+..||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHCcccCC
Confidence 8888777766667777654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=114.34 Aligned_cols=162 Identities=10% Similarity=-0.023 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHH-hC------CCc-chHHHHHHHHHHHHHHHHHHhHhhccc-CCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 386 GMYIVLYYAVNFFED-AG------SSL-DDYVASIIVAGLRFFMAIIGSACIQMF-SRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~-~g------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
+.+....+.+.++++ .| .+. ..+.......++..++.++.|+++||+ |||+.+..+.++.+++.++.++..
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 355666777777654 56 544 356777888889999999999999999 999999998888888777766520
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHH---HHHHHHHHHHHHhhhcHHHHHh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGI---VCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
...+..+....+ .+.......+...+++.|.+|++.|+.+.+. .+...++|..++|.+.+.+.+.
T Consensus 107 -----------~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFL-IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHH-HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHH-HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 022233333333 3333334456777899999999999876666 8889999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 534 LNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 534 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
.+|+..|++.+.+.+++.+...+..+
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999998888777766655444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-10 Score=117.11 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=120.6
Q ss_pred CccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhH
Q psy10231 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVY 138 (607)
Q Consensus 60 s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~ 138 (607)
+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+ ...+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888888889999999999999999999999999988888888888888888888889999998888888 8899
Q ss_pred HhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCCCChh
Q psy10231 139 VAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVPETPS 201 (607)
Q Consensus 139 i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~pes~~ 201 (607)
+.|.+|++.|+...+. ++....+|..++|.+++.+ +++..|.+.+++.++..+.. +..||.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 4778889999999888876 78889988888877776654 44666543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-08 Score=102.99 Aligned_cols=153 Identities=16% Similarity=-0.004 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC-----CCCCChHHHHHHHHHHHH
Q psy10231 409 VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD-----DRPLNWIPLACILANVCA 483 (607)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 483 (607)
+......++.++|+++.|+++||+|||+.+..+.++..++.++.++........... ....+...+...=...+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 445556788899999999999999999999999999888887776421110000000 001222223333233333
Q ss_pred HHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh--------hhhHHHHHHHHHHHHHHHHHhh
Q psy10231 484 SMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL--------LNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 484 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
...+..+....++.|..|++.|+...++.+.....|...+..+....... .+|+..+.......++ .++..
T Consensus 139 g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhh
Confidence 33334566678999999999999999999988888888777666544432 2344334333333333 33444
Q ss_pred hcccCCC
Q psy10231 556 AFLPETQ 562 (607)
Q Consensus 556 ~~~~~~~ 562 (607)
++.||+.
T Consensus 218 ~~~peSp 224 (491)
T 4gc0_A 218 YTVPESP 224 (491)
T ss_dssp GGSCCCH
T ss_pred hcCCCCh
Confidence 5678863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 607 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-04 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 9/167 (5%)
Query: 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTT 94
L ++ +P L + S D + S I+ G D +
Sbjct: 36 AYYLVRKNFALAMPYLVE----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 91
Query: 95 VQ----LTAIPFIIGWTIITVSKGFTLLCVGRFITGMA-IGMSSACYVYVAEICLPNDRG 149
+ L A + + + ++ V F+ G C + +RG
Sbjct: 92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG 151
Query: 150 YLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAV 196
+ + ++G I L + + A+ A + A+
Sbjct: 152 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 43/368 (11%), Positives = 91/368 (24%), Gaps = 26/368 (7%)
Query: 207 GMAIGEFRYYLIPSKINILQYHIHTWFITGMA-IGMSSACYVYVAEICLPNDRGYLSAFG 265
A +P + + F+ G C + +RG + +
Sbjct: 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 157
Query: 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNS 325
++G I L + + A+ A + A+ A
Sbjct: 158 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF--------------AFAM 203
Query: 326 LVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEAS 385
+ +S + E + Q F + I
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 386 GMYIVLYYAVNFFEDAG--SSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAF 443
Y +L ++ + ++ + A + ++ R T F
Sbjct: 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 323
Query: 444 FMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503
FM L + Y + N + + + G + L + EL P
Sbjct: 324 FMTLVTIATIVYWMNPA--------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375
Query: 504 VRGIMGGIVCSLGYLF-IFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562
G G GYL + + G +LA++ + + +
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
Query: 563 GKTLLEIE 570
+ ++
Sbjct: 436 RRHEQLLQ 443
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.23 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.11 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-34 Score=296.01 Aligned_cols=378 Identities=15% Similarity=0.102 Sum_probs=260.8
Q ss_pred cccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhc----cc
Q psy10231 39 THAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVS----KG 114 (607)
Q Consensus 39 ~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a----~~ 114 (607)
+....+.+.|.+. |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++ ++
T Consensus 40 ~~~~~~~~~p~~~----~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (447)
T d1pw4a_ 40 VRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115 (447)
T ss_dssp HHTSHHHHHHHTT----SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred HHHHHHHHHHHHH----HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh
Confidence 3344566777764 569999999999999999999999999999999999999999999999999999876 58
Q ss_pred hhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh-----hHHHHHHHhHHHHHH
Q psy10231 115 FTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-----TWQYTSAACAVVALV 188 (607)
Q Consensus 115 ~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l-----~Wr~~f~~~~~~~~~ 188 (607)
++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+..+|..+++.++... +||+.|++.+++.++
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 195 (447)
T d1pw4a_ 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 195 (447)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHH
Confidence 89999999999999999999 999999999999999999999999999999998877765 899999998888776
Q ss_pred HHHHH-hcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhH
Q psy10231 189 GFAAM-HAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPV 267 (607)
Q Consensus 189 ~~~~~-~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~ 267 (607)
..+.. ++.+|+|+.......+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 219 (447)
T d1pw4a_ 196 VALFAFAMMRDTPQSCGLPPIEEY-------------------------------------------------------- 219 (447)
T ss_dssp HHHHHHHHCCCSSTTTCCCSCTTT--------------------------------------------------------
T ss_pred HHHHHHHhcccchhhcccchhhhh--------------------------------------------------------
Confidence 65543 444554432211111000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy10231 268 FVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSL 347 (607)
Q Consensus 268 ~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (607)
+.++. +..++.
T Consensus 220 --------------------------------------------------~~~~~-------------------~~~~~~ 230 (447)
T d1pw4a_ 220 --------------------------------------------------KNDYP-------------------DDYNEK 230 (447)
T ss_dssp --------------------------------------------------CCC---------------------------
T ss_pred --------------------------------------------------hhhcc-------------------cchhhc
Confidence 00000 000000
Q ss_pred HHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHHHHHHH
Q psy10231 348 KVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSSLD-DYVASIIVAGLRFFMAIIG 425 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~ 425 (607)
.+++........++.++++..+. .....+......+....+.+.++.+. +.+.. ......+..+..+++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (447)
T d1pw4a_ 231 AEQELTAKQIFMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305 (447)
T ss_dssp -----CCTHHHHHHTSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHcCchHHH-----HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhh
Confidence 00111112223334444443332 22222233334567778888887653 44443 4667777888899999999
Q ss_pred hHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccch
Q psy10231 426 SACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVR 505 (607)
Q Consensus 426 g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 505 (607)
+++.||++|++..........+........... .....+......+. ......+..+..+.+..|.+|++.|
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-------PAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------CTTCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred hhhhhhccccccccccchhHHHHHHHHHHHHhc-------ccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 999999998765444433333332222221111 11222333333332 2333334456667889999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy10231 506 GIMGGIVCSLGYLF-IFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFL 558 (607)
Q Consensus 506 ~~~~g~~~~~~~~~-~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 558 (607)
+++.|+.+.+++++ ..++|.+.|.+.+..|+...+++.+++++++.++..++.
T Consensus 378 g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998885 556788999999999999888888887777776665553
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=8.6e-26 Score=231.38 Aligned_cols=384 Identities=13% Similarity=0.044 Sum_probs=246.8
Q ss_pred cchhHHHh--hhcccccccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHH
Q psy10231 26 DASWIGKL--HCNNLTHAIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPF 102 (607)
Q Consensus 26 ~~~~~~~~--~~~~~~~~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~ 102 (607)
+.-|+..+ ++..+..+...+.+|. +.+ ++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+.
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 33454433 4445555555666665 455 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhH----HHHHHHHHhhhhhhHhh-hHhHHhhccCC--CccccccchhhHHHHHHHHHHHHHhhhh--
Q psy10231 103 IIGWTIITVSKGFTL----LCVGRFITGMAIGMSSA-CYVYVAEICLP--NDRGYLSAFGPVFVSLGVLIVYSLGYIV-- 173 (607)
Q Consensus 103 ~~~~~~~a~a~~~~~----l~~~R~l~G~g~g~~~~-~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~ig~~l~~~l-- 173 (607)
.++.++.++..+... .++.+.+.+.+.+.... ......+..++ +++.+..+........|..+++.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 999988888766544 34556666666666665 54444444433 3456677777888888888888888877
Q ss_pred -hHHHHHHHhHHHHHHHHH-HHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHH
Q psy10231 174 -TWQYTSAACAVVALVGFA-AMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAE 251 (607)
Q Consensus 174 -~Wr~~f~~~~~~~~~~~~-~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E 251 (607)
+|+..+........+..+ ..+..||+++...++.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 201 (417)
T d1pv7a_ 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV------------------------------------------ 201 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhh------------------------------------------
Confidence 566666555555444433 223334333211100000
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhc
Q psy10231 252 ICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRR 331 (607)
Q Consensus 252 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~ 331 (607)
+
T Consensus 202 -----------------------------------------------------------------------~-------- 202 (417)
T d1pv7a_ 202 -----------------------------------------------------------------------G-------- 202 (417)
T ss_dssp -----------------------------------------------------------------------H--------
T ss_pred -----------------------------------------------------------------------h--------
Confidence 0
Q ss_pred CchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-----c
Q psy10231 332 STAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-----D 406 (607)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~ 406 (607)
++++........+.++.+..+.... ........ ........+.+........ .
T Consensus 203 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (417)
T d1pv7a_ 203 -----------------ANHSAFSLKLALELFRQPKLWFLSL-YVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRV 260 (417)
T ss_dssp -----------------SCCCCCCHHHHHHHTTSSHHHHHHH-HHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred -----------------hhcccccccccccccccccccchhh-hhHHHHHH----HHhhhccccccccccccccccchhh
Confidence 0000111111122233332222222 22121111 1222222222222211111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHh
Q psy10231 407 DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASML 486 (607)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (607)
.........+...++..+.+++.||.++|+.+..+..+.+++.+.+... ...+.......+.+.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~- 327 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTLHMFEVP- 327 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------------CCHHHHHHHHHHHHHHHH-
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------------cccchhhHHHHHHHHHHH-
Confidence 2345556667788889999999999999999998888888877776551 223333333333333333
Q ss_pred ccchhhhhhhccccCccchhhHHHHHHH-HHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy10231 487 GMLQLPWVMIAELFPLSVRGIMGGIVCS-LGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKT 565 (607)
Q Consensus 487 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (607)
...+....+..|.+|++.|+++.|+... ...+|..++|.+.|.+.|..|+...+++.++++++..++..+.+++++..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 3346667889999999999999998654 566899999999999999999999999999999888888888877776666
Q ss_pred HHH
Q psy10231 566 LLE 568 (607)
Q Consensus 566 ~~~ 568 (607)
+++
T Consensus 408 ~~r 410 (417)
T d1pv7a_ 408 LLR 410 (417)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.1e-11 Score=127.03 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy10231 391 LYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPL 469 (607)
Q Consensus 391 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
....|. +++.|.+. +.++......++..++.++.|+++||+|||+.+..+.++.+++.++.+...... ..
T Consensus 45 ~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 115 (447)
T d1pw4a_ 45 ALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------SS 115 (447)
T ss_dssp HHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------SS
T ss_pred HHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------hh
Confidence 334453 34557654 467788888999999999999999999999999999988888887776532221 12
Q ss_pred ChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhh-hhHHHHHHHHHHHH
Q psy10231 470 NWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLL-NMGGMMWAFSCACL 548 (607)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~-g~~~~~~~~~~~~~ 548 (607)
.+..++...+.+.+.+ ...+....++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.+.. +|+..+++.+.+.+
T Consensus 116 ~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~ 194 (447)
T d1pw4a_ 116 IAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 194 (447)
T ss_dssp SSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHH
Confidence 2333333333333333 334556688999999999999999999999999999998888776654 67778888888777
Q ss_pred HHHHHhhhcccCCCC
Q psy10231 549 LAMVFIQAFLPETQG 563 (607)
Q Consensus 549 ~~~~~~~~~~~~~~~ 563 (607)
+..++.+++.+++++
T Consensus 195 ~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 195 LVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHHHHHHCCCSST
T ss_pred HHHHHHHHhcccchh
Confidence 777777766665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3.6e-11 Score=121.02 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=126.6
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA- 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~- 134 (607)
+.+.+....+...+...++..++..+.+++.||+|||+++.++.++.+++.++.++.++.+.+++.-++.|++.+...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 5566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhhccCCCccccccchh-hHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCC
Q psy10231 135 CYVYVAEICLPNDRGYLSAFG-PVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVP 197 (607)
Q Consensus 135 ~~~~i~e~~~~~~r~~~~~~~-~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~p 197 (607)
..+++.|.+|+++|++..++. +....+|..+++.+++.+ ||+..|++.+++.++..+.. +.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999974 567788998988888777 89999999888887766654 4444
|