Psyllid ID: psy10278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDGR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccHHHHccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MNFYADIKCLKKHIREVHkrlkpfqcpvcgfttgRKATLQLHVRQhtrekpyacptcefktgdhnvLRKHvqrhmpvkkyqctfcsyscterfrlkdhtlakhnpgtdgr
Flexible Loop (DISEMBL)
mnfyadikCLKKHIRevhkrlkpfqcpvcgFTTGRKATLQLHVRqhtrekpyacptcefktgdHNVLRKHVqrhmpvkkyQCTFCSYSCterfrlkdhtlakhnpgtdgr
Low Complexity Region (SEG)
MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDGR
Disordered region (IsUnstruct)
**FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKD*************
Disordered Region (DISOPRED)
*NFYA**KCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLA*********
Disordered Region (DISEMBL)
MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDGR
Disordered Region (DISPRO)
MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.890	0.065	0.32	8e-13
P08044	390	Protein snail OS=Drosophi	no	N/A	0.854	0.241	0.412	2e-12
Q9NPA5	681	Zinc finger protein 64 ho	no	N/A	0.9	0.145	0.34	4e-12
Q13127	1097	RE1-silencing transcripti	no	N/A	0.845	0.084	0.336	4e-12
Q6PD29	541	Zinc finger protein 513 O	no	N/A	0.818	0.166	0.373	6e-12
Q5FWU5	541	Zinc finger protein 513 O	no	N/A	0.818	0.166	0.373	6e-12
Q8N8E2	541	Zinc finger protein 513 O	no	N/A	0.818	0.166	0.373	7e-12
O43623	268	Zinc finger protein SNAI2	no	N/A	0.727	0.298	0.445	1e-11
P97469	269	Zinc finger protein SNAI2	no	N/A	0.727	0.297	0.445	2e-11
Q52KB5	672	Zinc finger and BTB domai	no	N/A	0.918	0.150	0.394	2e-11

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCEFKTGDHNVLR 68
           L +H+R  H   KPF+C  C +    +  +  H RQ H   KP  CP C++KT D +  +
Sbjct: 317 LTRHMR-THSGEKPFKCEQCSYVASNQHEVTRHARQVHNGPKPLTCPHCDYKTADRSNFK 375

Query: 69  KHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD 108
           KHV+ H+  +++ C  C Y+ +++  L+ H  ++H+  T+
Sbjct: 376 KHVELHVNPRQFLCPVCDYAASKKCNLQYHIKSRHSGCTN 415

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.
Xenopus laevis (taxid: 8355)

>sp|P08044|SNAI_DROME Protein snail OS=Drosophila melanogaster GN=sna PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 3   FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTG 62
            Y  I  LK HIR       P +CP+CG    R   LQ H+R HT EKP+ CP C     
Sbjct: 288 LYTTIGALKMHIR---THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFA 344

Query: 63  DHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT 99
           D + LR H Q H+ VKKY C  C  S +    L  H+
Sbjct: 345 DRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHS 381

Essential for the correct specification of ventral-dorsal patterns.

Drosophila melanogaster (taxid: 7227)

>sp|Q9NPA5|ZF64A_HUMAN Zinc finger protein 64 homolog, isoforms 1 and 2 OS=Homo sapiens GN=ZFP64 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 5   ADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDH 64
           AD   L KH+R +H   +PF+C +C + +   + L +H+R HT + P+ C  C  K    
Sbjct: 213 ADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKIS 271

Query: 65  NVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN 104
           + L++H++ H   K ++C FC+  CT +  LK H   KH+
Sbjct: 272 SDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHS 311

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCEFKTGDHNVLR 68
           L +H+R  H   KPF+C  C +    +  +  H RQ H   KP  CP C++KT D +  +
Sbjct: 319 LTRHMR-THSGEKPFKCDQCSYVASNQHEVTRHARQVHNGPKPLNCPHCDYKTADRSNFK 377

Query: 69  KHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           KHV+ H+  +++ C  C Y+ +++  L+ H  +KH
Sbjct: 378 KHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSKH 412

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q6PD29|ZN513_MOUSE Zinc finger protein 513 OS=Mus musculus GN=Znf513 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
           L +H++  H   KPF+C  C + +     L+ H R HT EKPY CP C +  G+   L++
Sbjct: 375 LARHMK-THSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKR 433

Query: 70  HVQRHMPVKKYQCTFCSYSCTERFRLKDHTL 100
           H + H   K ++C+ C+YSC +   LK H L
Sbjct: 434 HGRIHSGDKPFRCSLCNYSCNQSMNLKRHML 464

Transcriptional regulator that plays a role in retinal development and maintenance.

Mus musculus (taxid: 10090)

>sp|Q5FWU5|ZN513_RAT Zinc finger protein 513 OS=Rattus norvegicus GN=Znf513 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
           L +H++  H   KPF+C  C + +     L+ H R HT EKPY CP C +  G+   L++
Sbjct: 375 LARHMK-THSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKR 433

Query: 70  HVQRHMPVKKYQCTFCSYSCTERFRLKDHTL 100
           H + H   K ++C+ C+YSC +   LK H L
Sbjct: 434 HGRIHSGDKPFRCSLCNYSCNQSMNLKRHML 464

Transcriptional regulator that plays a role in retinal development and maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q8N8E2|ZN513_HUMAN Zinc finger protein 513 OS=Homo sapiens GN=ZNF513 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
           L +H++  H   KPF+C  C + +     L+ H R HT EKPY CP C +  G+   L++
Sbjct: 375 LARHMK-THSGEKPFRCARCPYASAHLDNLKRHQRVHTGEKPYKCPLCPYACGNLANLKR 433

Query: 70  HVQRHMPVKKYQCTFCSYSCTERFRLKDHTL 100
           H + H   K ++C+ C+YSC +   LK H L
Sbjct: 434 HGRIHSGDKPFRCSLCNYSCNQSMNLKRHML 464

Transcriptional regulator that plays a role in retinal development and maintenance.

Homo sapiens (taxid: 9606)

>sp|O43623|SNAI2_HUMAN Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           Y  +  LK HIR       P  C +CG    R   LQ H+R HT EKP++CP C     D
Sbjct: 168 YVSLGALKMHIR---THTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFAD 224

Query: 64  HNVLRKHVQRHMPVKKYQCTFCS 86
            + LR H+Q H  VKKYQC  CS
Sbjct: 225 RSNLRAHLQTHSDVKKYQCKNCS 247

Transcriptional repressor. Involved in the generation and migration of neural crest cells. Plays a role in mediating RAF1-induced transcriptional repression of the TJ protein, occludin (OCLN) and subsequent oncogenic transformation of epithelial cells.

Homo sapiens (taxid: 9606)

>sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musculus GN=Snai2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           Y  +  LK HIR       P  C +CG    R   LQ H+R HT EKP++CP C     D
Sbjct: 169 YVSLGALKMHIR---THTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFAD 225

Query: 64  HNVLRKHVQRHMPVKKYQCTFCS 86
            + LR H+Q H  VKKYQC  CS
Sbjct: 226 RSNLRAHLQTHSDVKKYQCKNCS 248

Transcriptional repressor. Involved in the generation and migration of neural crest cells. Plays a role in mediating RAF1-induced transcriptional repression of the TJ protein, occludin (OCLN) and subsequent oncogenic transformation of epithelial cells.

Mus musculus (taxid: 10090)

>sp|Q52KB5|ZBT24_DANRE Zinc finger and BTB domain-containing protein 24 OS=Danio rerio GN=zbtb24 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           + D   LKKH+R  H   KPF C +CG     K+TLQ H+R H  EKPY C  C+    D
Sbjct: 358 FMDAAQLKKHLR-THTGEKPFTCEICGKCFTAKSTLQTHIRIHRGEKPYVCKVCDKTFSD 416

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH--TLAKHNP 105
            +  R+H   H   K + C+ C  S   +  LK H  T  K NP
Sbjct: 417 PSARRRHEVSHTGKKTFSCSICKVSFARKDNLKAHIKTHNKENP 460

May be involved in BMP2-induced transcription.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
427782147	974	Putative gonadotropin inducible transcri	0.954	0.107	0.518	7e-27
322802269	711	hypothetical protein SINV_04694 [Solenop	0.909	0.140	0.49	3e-25
332031557	711	Zinc finger protein 16 [Acromyrmex echin	0.818	0.126	0.49	3e-25
328782580	694	PREDICTED: zinc finger protein 568-like	0.909	0.144	0.49	8e-25
380015352	694	PREDICTED: zinc finger X-linked protein	0.909	0.144	0.49	9e-25
383862973	695	PREDICTED: zinc finger protein 64-like [	0.909	0.143	0.49	1e-24
340719811	694	PREDICTED: zinc finger protein 84-like [	0.909	0.144	0.49	1e-24
350410804	694	PREDICTED: zinc finger protein 64 homolo	0.909	0.144	0.49	1e-24
427780001	824	Putative gonadotropin inducible transcri	0.954	0.127	0.518	1e-24
307205577	487	Zinc finger protein 112-like protein [Ha	0.909	0.205	0.49	2e-24

>gi|427782147|gb|JAA56525.1| Putative gonadotropin inducible transcription factor [Rhipicephalus pulchellus]

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           ++D KCL+KH + VH ++KP+ C  CG  + RKA LQLH+RQHT EKP+AC  CE++TGD
Sbjct: 690 FSDSKCLRKHHQAVHGKVKPYVCSFCGHMSARKAMLQLHLRQHTGEKPFACNLCEYRTGD 749

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG 109
           HN LR+H  RH   K Y+C  C Y+C +    K H   KH PG DG
Sbjct: 750 HNSLRRHKMRHSGTKPYKCPHCPYACIQAISYKMHMKNKH-PGLDG 794

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802269|gb|EFZ22665.1| hypothetical protein SINV_04694 [Solenopsis invicta]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 70/100 (70%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG  + RKA LQ+H+RQHT +KP++C  C++KTGD
Sbjct: 408 YANSKCLKNHIQAVHSKLRPYVCNVCGHASARKAMLQMHLRQHTGDKPFSCELCDYKTGD 467

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  C Y+  +    K+H  AKH
Sbjct: 468 HNTLRRHIMQHTGFRPYKCPHCPYTAIQSSSYKNHLKAKH 507

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031557|gb|EGI71029.1| Zinc finger protein 16 [Acromyrmex echinatior]

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 71/100 (71%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG  + RKA LQ+H+RQHT +KP++C  C++KTGD
Sbjct: 431 YANSKCLKNHIQAVHSKLRPYVCNVCGHASARKAMLQMHLRQHTGDKPFSCEICDYKTGD 490

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSYS  +    K+H  ++H
Sbjct: 491 HNTLRRHIMQHTGFRPYKCPHCSYSAIQSSSYKNHLKSRH 530

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782580|ref|XP_001121833.2| PREDICTED: zinc finger protein 568-like [Apis mellifera]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG ++ RKA LQ+H+RQHT +KP++C  CE+KTGD
Sbjct: 433 YANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGD 492

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 493 HNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRH 532

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015352|ref|XP_003691667.1| PREDICTED: zinc finger X-linked protein ZXDA/ZXDB-like [Apis florea]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG ++ RKA LQ+H+RQHT +KP++C  CE+KTGD
Sbjct: 433 YANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGD 492

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 493 HNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRH 532

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862973|ref|XP_003706957.1| PREDICTED: zinc finger protein 64-like [Megachile rotundata]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG ++ RKA LQ+H+RQHT +KP++C  CE+KTGD
Sbjct: 434 YANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGD 493

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 494 HNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRH 533

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719811|ref|XP_003398339.1| PREDICTED: zinc finger protein 84-like [Bombus terrestris]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG ++ RKA LQ+H+RQHT +KP++C  CE+KTGD
Sbjct: 433 YANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGD 492

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 493 HNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRH 532

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410804|ref|XP_003489146.1| PREDICTED: zinc finger protein 64 homolog, isoforms 3 and 4-like [Bombus impatiens]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG ++ RKA LQ+H+RQHT +KP++C  CE+KTGD
Sbjct: 433 YANSKCLKSHIQAVHSKLRPYVCNVCGHSSARKAMLQMHLRQHTGDKPFSCELCEYKTGD 492

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 493 HNTLRRHIMQHTGFRPYKCPHCSYTAIQSSSYKNHLKSRH 532

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780001|gb|JAA55452.1| Putative gonadotropin inducible transcription factor [Rhipicephalus pulchellus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           ++D KCL+KH + VH ++KP+ C  CG  + RKA LQLH+RQHT EKP+AC  CE++TGD
Sbjct: 641 FSDSKCLRKHHQAVHGKVKPYVCSFCGHMSARKAMLQLHLRQHTGEKPFACNLCEYRTGD 700

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG 109
           HN LR+H  RH   K Y+C  C Y+C +    K H   KH PG DG
Sbjct: 701 HNSLRRHKMRHSGTKPYKCPHCPYACIQAISYKMHMKNKH-PGLDG 745

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205577|gb|EFN83869.1| Zinc finger protein 112-like protein [Harpegnathos saltator]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 70/100 (70%)

Query: 4   YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
           YA+ KCLK HI+ VH +L+P+ C VCG  + RKA LQ+H RQHT +KP++C  CE+KTGD
Sbjct: 226 YANSKCLKNHIQAVHSKLRPYVCSVCGHASARKAMLQMHFRQHTGDKPFSCEICEYKTGD 285

Query: 64  HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           HN LR+H+ +H   + Y+C  CSY+  +    K+H  ++H
Sbjct: 286 HNTLRRHIMQHTGFRPYKCQHCSYTAIQSSSYKNHLKSRH 325

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0037031	445	CG11456 [Drosophila melanogast	0.872	0.215	0.464	1.6e-19
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.836	0.494	0.393	2.3e-16
FB|FBgn0037722	383	CG8319 [Drosophila melanogaste	0.872	0.250	0.412	9.5e-16
ZFIN|ZDB-GENE-990415-255	263	snai1a "snail homolog 1a (Dros	0.918	0.384	0.403	9.8e-16
ZFIN|ZDB-GENE-031118-80	666	zfp64 "zinc finger protein 64	0.9	0.148	0.35	3.4e-15
UNIPROTKB|E1C418	150	E1C418 "Uncharacterized protei	0.863	0.633	0.357	4.2e-15
FB|FBgn0003448	390	sna "snail" [Drosophila melano	0.845	0.238	0.427	7.8e-15
UNIPROTKB|F1RSE8	268	LOC100155170 "Uncharacterized	0.836	0.343	0.421	8.8e-15
UNIPROTKB|F1RSF0	254	F1RSF0 "Uncharacterized protei	0.836	0.362	0.421	8.8e-15
UNIPROTKB|E1C375	268	SNAI2 "Uncharacterized protein	0.836	0.343	0.421	8.8e-15

FB|FBgn0037031 CG11456 [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 46/99 (46%), Positives = 58/99 (58%)

Query:     8 KCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVL 67
             K L KH++ VH ++KPF C VCG  T RKA+L +H+RQHT EKP  C  C+F T D +VL
Sbjct:   243 KTLSKHVKTVHNKIKPFICNVCGKKTARKASLIIHMRQHTGEKPLQCGECKFSTRDPSVL 302

Query:    68 RKHVQRHMPV---KKYQCTFCSYSCTERFRLKDHTLAKH 103
              KH QRH         +C+ C Y C +   LK H    H
Sbjct:   303 HKHRQRHDSQDTRSSLKCSQCDYFCIQANALKRHMRLNH 341

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 37/94 (39%), Positives = 54/94 (57%)

Query:    10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
             L +H++  H   KPF CP+C + +     L+ H R HT EKPY C  C++  G+   L++
Sbjct:    42 LARHMK-THSGEKPFACPLCPYASAHLDNLKRHQRVHTGEKPYKCQLCDYACGNLANLKR 100

Query:    70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
             H + H   K +QC+ CSYSC +   LK H L +H
Sbjct:   101 HGRIHSGDKPFQCSLCSYSCNQSMNLKRHML-RH 133

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0037722 CG8319 [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 9.5e-16, P = 9.5e-16
 Identities = 40/97 (41%), Positives = 50/97 (51%)

Query:    10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
             LK HI   H   +P  CP C      K  L++H+R HT EKPY CP C     D+N L K
Sbjct:   281 LKVHIH-AHMGERPHACPFCVSNFRSKQALKVHIRIHTGEKPYQCPHCPKTFSDNNNLAK 339

Query:    70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG 106
             H +RH   + Y+C+ C     E+  LK H L KH  G
Sbjct:   340 HRRRHSDERPYKCSICLQDFREKHHLKRHFLGKHRDG 376

GO:0005634 "nucleus" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-990415-255 snai1a "snail homolog 1a (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 42/104 (40%), Positives = 55/104 (52%)

Query:     4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
             Y  +  LK HIR  H    P  CP CG    R   L+ H+R HT E+P++CP C     D
Sbjct:   159 YNSLGALKMHIRS-HTL--PCVCPTCGKAFSRPWLLRGHIRTHTGERPFSCPHCNRAFAD 215

Query:    64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGT 107
              + LR H+Q H  VKKYQC+ CS + +    L+ H+ A   P T
Sbjct:   216 RSNLRAHLQTHADVKKYQCSTCSRTFSRMSLLQKHSAAGCCPST 259

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IC;IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IEP;IMP

GO:0001837 "epithelial to mesenchymal transition" evidence=IMP

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0007369 "gastrulation" evidence=IDA

ZFIN|ZDB-GENE-031118-80 zfp64 "zinc finger protein 64 homolog (mouse)" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 35/100 (35%), Positives = 56/100 (56%)

Query:     5 ADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDH 64
             AD   LKKH+R +H   +PF+C +C + +   + L +H+R HT + P+ C  C+ K   +
Sbjct:   186 ADSSSLKKHLR-IHYDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCNQCDAKFKIN 244

Query:    65 NVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN 104
             + L++H + H   K Y+C  C Y C  +  LK H   KH+
Sbjct:   245 SDLKRHSRVHSGEKPYKCDLCDYRCAMKANLKSHVHLKHS 284

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1C418 E1C418 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 34/95 (35%), Positives = 47/95 (49%)

Query:    16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM 75
             + H   KPF CP C + + +   L  H+R HT EKPY C  C F       L++H + H 
Sbjct:     2 KTHNGEKPFACPQCAYASAQLVNLTRHLRTHTGEKPYRCTGCSFACSSLGNLKRHERVHS 61

Query:    76 PVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDGR 110
               K +QC  C Y C +   LK H L+   P  +G+
Sbjct:    62 QDKPFQCAACDYRCNQSRNLKRHMLSHRLPEGEGQ 96

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0003448 sna "snail" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
             Y  I  LK HIR  H    P +CP+CG    R   LQ H+R HT EKP+ CP C     D
Sbjct:   289 YTTIGALKMHIR-THTL--PCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFAD 345

Query:    64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT 99
              + LR H Q H+ VKKY C  C  S +    L  H+
Sbjct:   346 RSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHS 381

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0007370 "ventral furrow formation" evidence=TAS

GO:0007375 "anterior midgut invagination" evidence=NAS

GO:0001710 "mesodermal cell fate commitment" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007500 "mesodermal cell fate determination" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA;TAS

GO:0007369 "gastrulation" evidence=NAS

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007417 "central nervous system development" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0007450 "dorsal/ventral pattern formation, imaginal disc" evidence=NAS

GO:0007498 "mesoderm development" evidence=NAS;TAS

GO:0007501 "mesodermal cell fate specification" evidence=TAS

GO:0009950 "dorsal/ventral axis specification" evidence=NAS

GO:0007499 "ectoderm and mesoderm interaction" evidence=NAS

GO:0055059 "asymmetric neuroblast division" evidence=IGI

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010004 "gastrulation involving germ band extension" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IPI

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0031065 "positive regulation of histone deacetylation" evidence=IDA

GO:0034332 "adherens junction organization" evidence=IMP

UNIPROTKB|F1RSE8 LOC100155170 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:     4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
             Y  +  LK HIR  H    P  C +CG    R   LQ H+R HT EKP++CP C     D
Sbjct:   168 YVSLGALKMHIR-THTL--PCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCSRAFAD 224

Query:    64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
              + LR H+Q H  VKKYQC  CS + +    L  H
Sbjct:   225 RSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKH 259

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RSF0 F1RSF0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:     4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
             Y  +  LK HIR  H    P  C +CG    R   LQ H+R HT EKP++CP C     D
Sbjct:   154 YVSLGALKMHIR-THTL--PCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCSRAFAD 210

Query:    64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
              + LR H+Q H  VKKYQC  CS + +    L  H
Sbjct:   211 RSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKH 245

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C375 SNAI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:     4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
             Y  +  LK HIR  H    P  C +CG    R   LQ H+R HT EKP++CP C     D
Sbjct:   168 YVSLGALKMHIR-THTL--PCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFAD 224

Query:    64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
              + LR H+Q H  VKKYQC  CS + +    L  H
Sbjct:   225 RSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKH 259

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG2462|consensus	279		99.93
KOG2462|consensus	279		99.93
KOG1074|consensus	958		99.71
KOG3576|consensus	267		99.68
KOG3623|consensus	1007		99.67
KOG3576|consensus	267		99.66
KOG3623|consensus	1007		99.65
KOG1074|consensus	958		99.62
KOG3608|consensus	467		99.55
KOG3608|consensus	467		99.53
PHA00733	128	hypothetical protein	99.43
PHA02768	55	hypothetical protein; Provisional	99.18
PLN03086	567	PRLI-interacting factor K; Provisional	99.09
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.05
PHA00733	128	hypothetical protein	99.01
PHA02768	55	hypothetical protein; Provisional	99.01
PLN03086	567	PRLI-interacting factor K; Provisional	98.96
KOG3993|consensus	500		98.86
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.81
PHA00616	44	hypothetical protein	98.69
PHA00616	44	hypothetical protein	98.64
PHA00732	79	hypothetical protein	98.54
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.38
KOG3993|consensus	500		98.37
PHA00732	79	hypothetical protein	98.34
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.32
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.28
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.28
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.22
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.21
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.06
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.83
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.77
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.75
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.55
smart00355	26	ZnF_C2H2 zinc finger.	97.55
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.4
PRK04860	160	hypothetical protein; Provisional	97.31
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.31
smart00355	26	ZnF_C2H2 zinc finger.	97.31
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.27
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.98
PRK04860	160	hypothetical protein; Provisional	96.94
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.35
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.33
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.17
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.81
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.2
COG5048	467	FOG: Zn-finger [General function prediction only]	93.96
COG5048	467	FOG: Zn-finger [General function prediction only]	93.76
KOG1146|consensus	1406		93.49
KOG2893|consensus	341		93.43
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	93.19
COG4049	65	Uncharacterized protein containing archaeal-type C	93.12
COG1592	166	Rubrerythrin [Energy production and conversion]	92.11
COG5189	423	SFP1 Putative transcriptional repressor regulating	91.96
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	91.89
KOG4173|consensus	253		91.87
KOG2231|consensus	669		91.84
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.38
KOG2186|consensus	276		90.82
KOG2231|consensus	669		90.49
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	90.44
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	90.43
KOG2186|consensus	276		90.09
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.99
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	89.07
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	89.02
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	88.98
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	88.98
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.83
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	88.78
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	88.61
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	88.5
smart00531	147	TFIIE Transcription initiation factor IIE.	88.37
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	88.1
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.52
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	87.3
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.27
PRK06266	178	transcription initiation factor E subunit alpha; V	86.04
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.65
KOG2482|consensus	423		85.3
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	85.28
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	84.88
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	84.13
PF14353	128	CpXC: CpXC protein	84.09
PTZ00255	90	60S ribosomal protein L37a; Provisional	83.86
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.31
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	82.06
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	82.04
PRK09678	72	DNA-binding transcriptional regulator; Provisional	81.3
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	81.17
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	80.89
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	80.44

>KOG2462|consensus

Probab=99.93  E-value=2.8e-26  Score=137.01  Aligned_cols=98  Identities=40%  Similarity=0.686  Sum_probs=55.0

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      |.|.+...|+-|++ +|.  .+..|.+||+.|..+=.|+.|+++|+||+||.|+.|++.|...++|..|+++|.+.++|+
T Consensus       169 K~YvSmpALkMHir-TH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~q  245 (279)
T KOG2462|consen  169 KVYVSMPALKMHIR-THT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQ  245 (279)
T ss_pred             ceeeehHHHhhHhh-ccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcccc
Confidence            44555555555553 343  345555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCCcccccHHHHHhhhhhc
Q psy10278         82 CTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        82 C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      |..|+|+|+..+.|.+|..+.
T Consensus       246 C~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  246 CPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             CcchhhHHHHHHHHHHhhhhc
Confidence            555555555555555555443

>KOG2462|consensus

Probab=99.93  E-value=3.8e-26  Score=136.45  Aligned_cols=103  Identities=25%  Similarity=0.520  Sum_probs=94.5

Q ss_pred             cchhcHHHHHHHHHHHhc---CCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278          2 NFYADIKCLKKHIREVHK---RLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~---~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      |.|++...|.+|.+ .|-   ..+.+.|+.|++.+.+-..|+.|+++|.  .+.+|.+||+.|..+.-|+.|+++|+||+
T Consensus       138 k~ysT~snLsrHkQ-~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEK  214 (279)
T KOG2462|consen  138 KSYSTSSNLSRHKQ-THRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEK  214 (279)
T ss_pred             cccccccccchhhc-ccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCC
Confidence            67889999999995 664   3456899999999999999999999997  57899999999999999999999999999


Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      ||.|+.|+++|+.+++|+.||.+|.+.+.
T Consensus       215 PF~C~hC~kAFADRSNLRAHmQTHS~~K~  243 (279)
T KOG2462|consen  215 PFSCPHCGKAFADRSNLRAHMQTHSDVKK  243 (279)
T ss_pred             CccCCcccchhcchHHHHHHHHhhcCCcc
Confidence            99999999999999999999999998764

>KOG1074|consensus

Probab=99.71  E-value=1.6e-18  Score=116.40  Aligned_cols=55  Identities=22%  Similarity=0.417  Sum_probs=51.0

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +..|.+|.+...=.+.|+-|.++|+|||||+|..||++|+.+.+|+.|+.+|-..
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~  659 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK  659 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccC
Confidence            4689999999999999999999999999999999999999999999999888643

>KOG3576|consensus

Probab=99.68  E-value=3.9e-18  Score=98.67  Aligned_cols=102  Identities=25%  Similarity=0.473  Sum_probs=58.2

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC------
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM------   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~------   75 (110)
                      |.|.--.-|.+|++ .|...+.+.|..||+.|.....|++|+++|+|..||.|..|++.|.+.-.|..|++.-+      
T Consensus       125 K~F~lQRmlnrh~k-ch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~y  203 (267)
T KOG3576|consen  125 KKFGLQRMLNRHLK-CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQY  203 (267)
T ss_pred             hhhhHHHHHHHHhh-hccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHH
Confidence            45555555556662 45555555666666666666666666666666666666666666666655655555221      


Q ss_pred             -----CCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         76 -----PVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        76 -----~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                           .++-|.|..||.+-.....+..|++.+|.
T Consensus       204 aykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  204 AYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence                 13335666666665555566666655554

>KOG3623|consensus

Probab=99.67  E-value=1.1e-17  Score=111.44  Aligned_cols=82  Identities=21%  Similarity=0.408  Sum_probs=77.7

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhh
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH   98 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H   98 (110)
                      ..+-.|.|..|+++|.-.++|.+|...|+|.+||.|.+|.+.|..+-.|..|.+.|.||+||.|.+|+|.|+...++.+|
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQH  969 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhh
Confidence            34557999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q psy10278         99 TL  100 (110)
Q Consensus        99 ~~  100 (110)
                      |.
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            85

>KOG3576|consensus

Probab=99.66  E-value=3.7e-17  Score=94.63  Aligned_cols=86  Identities=29%  Similarity=0.556  Sum_probs=80.5

Q ss_pred             CCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhh
Q psy10278         20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT   99 (110)
Q Consensus        20 ~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~   99 (110)
                      +...+.|.+|++.|.....|.+|++.|...+.+.|..||+.|...-.|..|.++|+|.+||+|..|+++|+++.+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            44558999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC
Q psy10278        100 LAKHNP  105 (110)
Q Consensus       100 ~~~~~~  105 (110)
                      +.-|+-
T Consensus       194 ~kvhgv  199 (267)
T KOG3576|consen  194 KKVHGV  199 (267)
T ss_pred             HHHcCc
Confidence            977763

>KOG3623|consensus

Probab=99.65  E-value=9e-17  Score=107.15  Aligned_cols=101  Identities=23%  Similarity=0.462  Sum_probs=87.7

Q ss_pred             cchhcHHHHHHHHHHHhc-CCCCccCCcccccccCchhHHHHHHhcCC-------------CCceeCCCCCCCcCChHHH
Q psy10278          2 NFYADIKCLKKHIREVHK-RLKPFQCPVCGFTTGRKATLQLHVRQHTR-------------EKPYACPTCEFKTGDHNVL   67 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~-~~~~~~C~~c~~~~~~~~~l~~h~~~~~~-------------~~~~~c~~c~~~~~~~~~l   67 (110)
                      +.|.+...|+.|+...|. .+..|.|..|..+|.....|.+|+..|-.             .+.|+|..|++.|..+-.|
T Consensus       218 rgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHL  297 (1007)
T KOG3623|consen  218 RGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHL  297 (1007)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHH
Confidence            356667789999976665 45559999999999999999999988743             2348999999999999999


Q ss_pred             HHHHHhcCCCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         68 RKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        68 ~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      ..|+++|.||+||.|+-|+|.|+...++..||.+.
T Consensus       298 KEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  298 KEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             HhhheeecCCCCcCCcccccccccCCccccccccc
Confidence            99999999999999999999999999999998654

>KOG1074|consensus

Probab=99.62  E-value=5.1e-16  Score=104.68  Aligned_cols=58  Identities=24%  Similarity=0.359  Sum_probs=54.0

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCCC
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG  109 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  109 (110)
                      ..|.+|++.|..++.|..|+++|++++||.|..|++.|+.+.+|+.||..|...++..
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~s  937 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPS  937 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCc
Confidence            5799999999999999999999999999999999999999999999999988766544

>KOG3608|consensus

Probab=99.55  E-value=1.3e-14  Score=90.19  Aligned_cols=102  Identities=28%  Similarity=0.565  Sum_probs=80.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCC----------------------------CCcee
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR----------------------------EKPYA   53 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~----------------------------~~~~~   53 (110)
                      +.|.++..|..|++ .|++++..-|+.|+.-|.+...|..|.+..+.                            ...|.
T Consensus       187 ~~~~~k~~LreH~r-~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~yk  265 (467)
T KOG3608|consen  187 KHMGNKYRLREHIR-THSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYK  265 (467)
T ss_pred             hhhccHHHHHHHHH-hcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccc
Confidence            56777788888884 67877777777777777777777777654321                            13588


Q ss_pred             CCCCCCCcCChHHHHHHHH-hcCCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         54 CPTCEFKTGDHNVLRKHVQ-RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        54 c~~c~~~~~~~~~l~~h~~-~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |+.|+-.....+.|..|++ .|...+||+|..|.+.|...+.|.+|..+|..
T Consensus       266 CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~  317 (467)
T KOG3608|consen  266 CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSK  317 (467)
T ss_pred             ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccc
Confidence            9999999999999999999 68889999999999999999999999987763

>KOG3608|consensus

Probab=99.53  E-value=4.2e-14  Score=88.03  Aligned_cols=101  Identities=33%  Similarity=0.675  Sum_probs=84.5

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHH-hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      |.|.+...|..|+. .|-.  -|+|+.|.++....++|..|++ .|...+|++|..|+..+...+.|..|..+|. +..|
T Consensus       245 KrFaTeklL~~Hv~-rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y  320 (467)
T KOG3608|consen  245 KRFATEKLLKSHVV-RHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVY  320 (467)
T ss_pred             HHHhHHHHHHHHHH-Hhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccce
Confidence            67899999999984 4543  5899999999999999999998 5778899999999999999999999999887 5668


Q ss_pred             eccC--CCcccccHHHHHhhhhhcCCCC
Q psy10278         81 QCTF--CSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        81 ~C~~--C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      .|..  |...|.+..+++.|++.+|..+
T Consensus       321 ~C~h~~C~~s~r~~~q~~~H~~evhEg~  348 (467)
T KOG3608|consen  321 QCEHPDCHYSVRTYTQMRRHFLEVHEGN  348 (467)
T ss_pred             ecCCCCCcHHHHHHHHHHHHHHHhccCC
Confidence            8866  8888888888888888777433

>PHA00733 hypothetical protein

Probab=99.43  E-value=2.2e-13  Score=75.25  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=69.6

Q ss_pred             CCCCccCCcccccccCchhHHHH--HH---hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHH
Q psy10278         20 RLKPFQCPVCGFTTGRKATLQLH--VR---QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFR   94 (110)
Q Consensus        20 ~~~~~~C~~c~~~~~~~~~l~~h--~~---~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~   94 (110)
                      ..+++.|.+|...|.....+..+  +.   .+.+.++|.|..|++.|.....|..|+..+  +.++.|..|++.|.....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            35568999999888877666655  11   233477999999999999999999999976  467999999999999999


Q ss_pred             HHhhhhhcCCC
Q psy10278         95 LKDHTLAKHNP  105 (110)
Q Consensus        95 l~~H~~~~~~~  105 (110)
                      |..|+...|+-
T Consensus       115 L~~H~~~~h~~  125 (128)
T PHA00733        115 TLDHVCKKHNI  125 (128)
T ss_pred             HHHHHHHhcCc
Confidence            99999988863

>PHA02768 hypothetical protein; Provisional

Probab=99.18  E-value=1.1e-11  Score=57.88  Aligned_cols=44  Identities=16%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHH
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~   96 (110)
                      .|.|+.||+.|...+.|..|++.|+  +|++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3678888888888888888888877  6788888888887666553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.09  E-value=7.9e-10  Score=73.76  Aligned_cols=91  Identities=22%  Similarity=0.421  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCC----------hHHHHHHHHhcCC
Q psy10278          7 IKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD----------HNVLRKHVQRHMP   76 (110)
Q Consensus         7 ~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~----------~~~l~~h~~~h~~   76 (110)
                      ...|..|+. .+.  .++.|+ |+..+ ....|..|+..|-+.+++.|+.|+..+..          ...|..|.... +
T Consensus       465 ~s~LekH~~-~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G  538 (567)
T PLN03086        465 QGEMEKHMK-VFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-G  538 (567)
T ss_pred             hHHHHHHHH-hcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-C
Confidence            567788885 443  578888 88654 45778888777888888888888877741          34677787774 7


Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      .+++.|..|++.+..+ .+..|+...|.
T Consensus       539 ~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        539 SRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            7888888888877654 56667665543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.05  E-value=1.9e-10  Score=46.33  Aligned_cols=26  Identities=35%  Similarity=0.797  Sum_probs=21.6

Q ss_pred             HHHHHHHhcCCCCceeccCCCccccc
Q psy10278         66 VLRKHVQRHMPVKKYQCTFCSYSCTE   91 (110)
Q Consensus        66 ~l~~h~~~h~~~~p~~C~~C~~~f~~   91 (110)
                      +|..|++.|++++||.|+.|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46788889999999999999988863

...

>PHA00733 hypothetical protein

Probab=99.01  E-value=1.3e-09  Score=60.31  Aligned_cols=64  Identities=25%  Similarity=0.529  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278          9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus         9 ~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      .|..|+  .+.+++||.|+.|++.|.+...|..|+..+  ..++.|..|++.|.....|..|+...++
T Consensus        61 ~l~~~~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         61 YLYKLL--TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHhhc--ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            344454  245688999999999999999999999865  3478999999999999999999886553

>PHA02768 hypothetical protein; Provisional

Probab=99.01  E-value=1.4e-10  Score=54.25  Aligned_cols=44  Identities=18%  Similarity=0.451  Sum_probs=39.4

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHH
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLR   68 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~   68 (110)
                      .|.|+.||+.|.....|..|++.|+  +++.|..|++.|...+.|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4899999999999999999999998  6899999999998776654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.96  E-value=2.6e-09  Score=71.38  Aligned_cols=77  Identities=18%  Similarity=0.487  Sum_probs=64.1

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccc----------
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCT----------   90 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~----------   90 (110)
                      +..+.|+.|++.|. ...+..|+..++  +++.|+ |+..+ ....|..|+..|..++|+.|..|++.|.          
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d  525 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD  525 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh
Confidence            34578999999996 577999999874  789999 99755 6689999999999999999999999985          


Q ss_pred             cHHHHHhhhhhc
Q psy10278         91 ERFRLKDHTLAK  102 (110)
Q Consensus        91 ~~~~l~~H~~~~  102 (110)
                      ..+.|..|....
T Consensus       526 ~~s~Lt~HE~~C  537 (567)
T PLN03086        526 RLRGMSEHESIC  537 (567)
T ss_pred             hhhhHHHHHHhc
Confidence            245788888764

>KOG3993|consensus

Probab=98.86  E-value=3.8e-10  Score=72.07  Aligned_cols=81  Identities=20%  Similarity=0.387  Sum_probs=55.9

Q ss_pred             ccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC----------------------------
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM----------------------------   75 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~----------------------------   75 (110)
                      |.|.+|...|.....|.+|.-.-.....|.|+.|++.|.=..+|..|.+=|.                            
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            6666666666666666666443333345666666666666666666665441                            


Q ss_pred             -----CCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         76 -----PVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        76 -----~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                           .+..|.|..|++.|.....|++|+.+|+.
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                 12359999999999999999999999885

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.81  E-value=4.2e-09  Score=42.36  Aligned_cols=25  Identities=40%  Similarity=0.972  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhcCCCCccCCccccccc
Q psy10278          9 CLKKHIREVHKRLKPFQCPVCGFTTG   34 (110)
Q Consensus         9 ~l~~h~~~~~~~~~~~~C~~c~~~~~   34 (110)
                      +|..|++ .|.+++||.|+.|++.|.
T Consensus         1 ~l~~H~~-~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMR-THTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHH-HHSSSSSEEESSSSEEES
T ss_pred             CHHHHhh-hcCCCCCCCCCCCcCeeC
Confidence            4677885 688888888888887775

...

>PHA00616 hypothetical protein

Probab=98.69  E-value=7.7e-09  Score=46.22  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=16.6

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      |.|+.||+.|...+.+..|++.|+++.|+.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            4555555555555555555555555555544

>PHA00616 hypothetical protein

Probab=98.64  E-value=1.4e-08  Score=45.43  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      ||+|+.||+.|...+.+..|++.|++++++.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            689999999999999999999999999988775

>PHA00732 hypothetical protein

Probab=98.54  E-value=1.3e-07  Score=48.08  Aligned_cols=45  Identities=40%  Similarity=0.775  Sum_probs=28.2

Q ss_pred             CccCCcccccccCchhHHHHHHh-cCCCCceeCCCCCCCcCChHHHHHHHHh
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCEFKTGDHNVLRKHVQR   73 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~~~~~~~l~~h~~~   73 (110)
                      ||.|..|++.|.+...|..|++. |.+   +.|+.|++.|.   .+..|...
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            46677777777777777777663 432   36777777665   34455543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.38  E-value=1.1e-06  Score=41.46  Aligned_cols=49  Identities=29%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             eeCCCCCCCcCChHHHHHHHHh-cCC-CCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQR-HMP-VKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~-h~~-~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |.||.|++ ......|..|... |.. .+.+.|+.|...+.  .+|..|+...|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            34445544 2233344444442 222 12345555544333  24555555444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3993|consensus

Probab=98.37  E-value=1.7e-07  Score=60.28  Aligned_cols=71  Identities=30%  Similarity=0.416  Sum_probs=56.6

Q ss_pred             chhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCC---------------------------------C
Q psy10278          3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR---------------------------------E   49 (110)
Q Consensus         3 ~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~---------------------------------~   49 (110)
                      .|.+...|.+|. -..+-..-|.|+.|++.|.-..+|..|.+.|-.                                 .
T Consensus       276 kYeD~F~LAQHr-C~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~  354 (500)
T KOG3993|consen  276 KYEDAFALAQHR-CPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSS  354 (500)
T ss_pred             hhhhHHHHhhcc-CCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccC
Confidence            477778888886 334444459999999999999999999887721                                 1


Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhc
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h   74 (110)
                      ..|.|..|++.|.....|..|+.+|
T Consensus       355 gi~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  355 GIFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             ceeecHHhhhhhHHHHHHHHhHHhh
Confidence            2488999999999999999997766

>PHA00732 hypothetical protein

Probab=98.34  E-value=5.5e-07  Score=45.76  Aligned_cols=47  Identities=30%  Similarity=0.639  Sum_probs=37.5

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHh-cCCCCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQR-HMPVKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~-h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      ||.|..|++.|.....|..|++. |.   ++.|+.|++.|.+   +..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhcccC
Confidence            47899999999999999999984 54   3589999999984   667775544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.32  E-value=4.1e-07  Score=35.33  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=18.5

Q ss_pred             eeccCCCcccccHHHHHhhhhh
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLA  101 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~  101 (110)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5788888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.28  E-value=8.2e-07  Score=35.85  Aligned_cols=26  Identities=15%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ||.|..|++.|.....|..|++.++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68899999999999999999987764

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.28  E-value=2.3e-06  Score=40.43  Aligned_cols=50  Identities=30%  Similarity=0.649  Sum_probs=38.0

Q ss_pred             CccCCcccccccCchhHHHHHH-hcCCC-CceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVR-QHTRE-KPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      .|.||.|++ ..+...|..|.. .|..+ +.+.||+|...+.  .+|..|+...+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            488999999 566788999987 45553 5689999997544  48888887543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.22  E-value=1.2e-06  Score=34.11  Aligned_cols=24  Identities=29%  Similarity=0.693  Sum_probs=18.3

Q ss_pred             eeccCCCcccccHHHHHhhhhhcC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |.|+.|++.|.....|..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578888888888888888888765

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.21  E-value=1.7e-06  Score=45.69  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             cCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         25 QCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        25 ~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      +|..|+..|.+...+..|+....+...-   . ...+.....+...+.... ...+.|..|++.|.....|..|+..++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~---~-~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP---D-QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             Cccccccccccccccccccccccccccc---c-cccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            4889999999999999998754432211   1 111122333333433222 237999999999999999999999764

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=2.2e-06  Score=33.20  Aligned_cols=22  Identities=36%  Similarity=0.984  Sum_probs=13.4

Q ss_pred             ccCCcccccccCchhHHHHHHh
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQ   45 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~   45 (110)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.83  E-value=5.3e-06  Score=52.00  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=42.1

Q ss_pred             CCCccCCc--ccccccCchhHHHHHHh-cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHh
Q psy10278         21 LKPFQCPV--CGFTTGRKATLQLHVRQ-HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKD   97 (110)
Q Consensus        21 ~~~~~C~~--c~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~   97 (110)
                      ++||+|++  |.+.+.....|+-|+.. |-..+...-+.          ...+..+-...+||.|++|+|.+.....|.-
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~----------p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS----------PEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCC----------ccccccccccCCceeccccchhhccCcccee
Confidence            46777766  77777777777766552 21111111110          0011111335689999999999999988888


Q ss_pred             hhh
Q psy10278         98 HTL  100 (110)
Q Consensus        98 H~~  100 (110)
                      |+.
T Consensus       417 Hr~  419 (423)
T COG5189         417 HRK  419 (423)
T ss_pred             ccc
Confidence            875

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.77  E-value=3.4e-05  Score=35.40  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             CCCCceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         75 MPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        75 ~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      ..+.|-.|+.|+..+.+..+|+.|+...|...+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346778888888888888888888877776554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.76  E-value=1.2e-05  Score=32.28  Aligned_cols=24  Identities=42%  Similarity=0.805  Sum_probs=14.7

Q ss_pred             CccCCcccccccCchhHHHHHHhc
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      ||.|..|+..|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            355666666666666666665544

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.75  E-value=2.1e-05  Score=30.40  Aligned_cols=23  Identities=48%  Similarity=1.031  Sum_probs=13.1

Q ss_pred             ccCCcccccccCchhHHHHHHhc
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      |.|+.|+..|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666543

...

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.55  E-value=6.7e-05  Score=29.48  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=19.5

Q ss_pred             eeccCCCcccccHHHHHhhhhhc
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      |.|..|++.|.....+..|++++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57889999999999999998754

>smart00355 ZnF_C2H2 zinc finger

Probab=97.55  E-value=8.1e-05  Score=29.11  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=16.0

Q ss_pred             eeccCCCcccccHHHHHhhhhhc
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +.|..|++.|.....+..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45777777777777777777643

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.40  E-value=0.00011  Score=29.49  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             eeccCCCcccccHHHHHhhhhh
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLA  101 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~  101 (110)
                      |.|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.31  E-value=0.00027  Score=40.73  Aligned_cols=38  Identities=24%  Similarity=0.546  Sum_probs=32.1

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccH
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTER   92 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~   92 (110)
                      +|.|. |+.   ....+..|.+.+.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58897 886   566778999999999999999999987643

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.31  E-value=0.00016  Score=28.08  Aligned_cols=24  Identities=42%  Similarity=0.837  Sum_probs=16.6

Q ss_pred             eeccCCCcccccHHHHHhhhhhcCC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |.|+.|..... ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            57888887777 7788888877653

>smart00355 ZnF_C2H2 zinc finger

Probab=97.31  E-value=0.00025  Score=27.61  Aligned_cols=23  Identities=39%  Similarity=0.883  Sum_probs=13.4

Q ss_pred             ccCCcccccccCchhHHHHHHhc
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      |.|..|++.|.....+..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34666666666666666665543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.27  E-value=8e-05  Score=34.20  Aligned_cols=29  Identities=28%  Similarity=0.522  Sum_probs=12.6

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      .|..|++|+..+.+..+|..|+...++.+
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            34555555555555555555555444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.98  E-value=0.00031  Score=27.48  Aligned_cols=21  Identities=29%  Similarity=0.732  Sum_probs=14.1

Q ss_pred             ccCCcccccccCchhHHHHHH
Q psy10278         24 FQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      |.|.+|+..|.+...+..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            456677777777777766665

>PRK04860 hypothetical protein; Provisional

Probab=96.94  E-value=0.00095  Score=38.53  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=31.9

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD   63 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~   63 (110)
                      +|.|. |+.   ....+..|.+.+.++++|.|..|+..+..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            58998 987   66778999999999999999999987754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.35  E-value=0.0053  Score=32.14  Aligned_cols=66  Identities=17%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             chhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhc
Q psy10278          3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus         3 ~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h   74 (110)
                      .|.+...|..|+...|.-..+    . ...+.....+........ ...+.|..|+..|.....|..|+..+
T Consensus         8 ~f~~~~~l~~H~~~~H~~~~~----~-~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    8 SFSSVDDLLQHMKKKHGFDIP----D-QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccc----c-cccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            577888899999766654332    1 111112222333322221 22689999999999999999999964

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.33  E-value=0.0038  Score=24.54  Aligned_cols=19  Identities=26%  Similarity=0.553  Sum_probs=12.0

Q ss_pred             eccCCCcccccHHHHHhhhh
Q psy10278         81 QCTFCSYSCTERFRLKDHTL  100 (110)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H~~  100 (110)
                      .|+.|++.| ....|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            567777777 4456666654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.17  E-value=0.0056  Score=25.81  Aligned_cols=24  Identities=21%  Similarity=0.602  Sum_probs=18.7

Q ss_pred             ceeccCCCcccccHHHHHhhhhhc
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +|.|..|+..|.....+..|+...
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            577888888888888888887643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.81  E-value=0.023  Score=23.80  Aligned_cols=10  Identities=50%  Similarity=1.557  Sum_probs=4.7

Q ss_pred             ccCCcccccc
Q psy10278         24 FQCPVCGFTT   33 (110)
Q Consensus        24 ~~C~~c~~~~   33 (110)
                      |.|..||..+
T Consensus         2 ~~C~~CGy~y   11 (33)
T cd00350           2 YVCPVCGYIY   11 (33)
T ss_pred             EECCCCCCEE
Confidence            3455555443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.20  E-value=0.024  Score=30.64  Aligned_cols=14  Identities=29%  Similarity=0.757  Sum_probs=7.0

Q ss_pred             ceeCCCCCCCcCCh
Q psy10278         51 PYACPTCEFKTGDH   64 (110)
Q Consensus        51 ~~~c~~c~~~~~~~   64 (110)
                      |..|+.||..|...
T Consensus        26 PivCP~CG~~~~~~   39 (108)
T PF09538_consen   26 PIVCPKCGTEFPPE   39 (108)
T ss_pred             CccCCCCCCccCcc
Confidence            44555555554433

The function of members of this family is unknown.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.96  E-value=0.019  Score=37.53  Aligned_cols=55  Identities=22%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             ceeCCCCCCCcCChHHHHHHHH--hcCCC--Cceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQ--RHMPV--KKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~--~h~~~--~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ++.|..|...|.....+..|..  .|.++  +|+.|+  .|++.|.+...+..|...+.+.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence            4556666666666666666666  56666  677776  5777777766666666666553

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.76  E-value=0.017  Score=37.77  Aligned_cols=63  Identities=25%  Similarity=0.597  Sum_probs=54.7

Q ss_pred             CCccCCcccccccCchhHHHHHH--hcCCC--CceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccC
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVR--QHTRE--KPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTF   84 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~--~~~~~--~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~   84 (110)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.....+..|...|.+..++.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            36789999999999999999999  78888  899999  79999999999999999998877776643

>KOG1146|consensus

Probab=93.49  E-value=0.0096  Score=44.30  Aligned_cols=83  Identities=28%  Similarity=0.508  Sum_probs=46.8

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHh-cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHH
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFR   94 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~   94 (110)
                      ..+.-.+.+.|+.|+..+.....|-.|++. |.....   ..|.. +...-.+..-...-.+-+||.|..|...++.+.+
T Consensus       458 ~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~-gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~  533 (1406)
T KOG1146|consen  458 VLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKA-GQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGN  533 (1406)
T ss_pred             eeecccccccCCccchhhhhHHHhhhcccccccccch---hHhHh-ccccccccccccccCCCCcccceeeeeeeecchH
Confidence            334445667788888888887777777774 322211   11110 0000000000001123467899999999999999


Q ss_pred             HHhhhhhc
Q psy10278         95 LKDHTLAK  102 (110)
Q Consensus        95 l~~H~~~~  102 (110)
                      |..|+.+-
T Consensus       534 LsihlqS~  541 (1406)
T KOG1146|consen  534 LSIHLQSD  541 (1406)
T ss_pred             HHHHHHHH
Confidence            99998753

>KOG2893|consensus

Probab=93.43  E-value=0.015  Score=35.58  Aligned_cols=39  Identities=23%  Similarity=0.458  Sum_probs=18.6

Q ss_pred             CCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhh
Q psy10278         56 TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH   98 (110)
Q Consensus        56 ~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H   98 (110)
                      .|++.|.....|++|++    .+.|+|-.|.+.....-.|..|
T Consensus        15 ycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   15 YCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            45555555555555544    2335555555443333344333

>TIGR00622 ssl1 transcription factor ssl1

Probab=93.19  E-value=0.3  Score=26.61  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=51.5

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCCCc------------eeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcc
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKP------------YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYS   88 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~------------~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~   88 (110)
                      +-|-.|++|+-.+-+...|.+..-.-....+            ..|..|...|........  ..-.....|.|+.|...
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCCCc
Confidence            3477899999988888877755321111111            137788887765421110  00122346899999999


Q ss_pred             cccHHHHHhhhhhcCCC
Q psy10278         89 CTERFRLKDHTLAKHNP  105 (110)
Q Consensus        89 f~~~~~l~~H~~~~~~~  105 (110)
                      |--.-+.-.|-..|.-.
T Consensus        91 FC~dCD~fiHe~Lh~CP  107 (112)
T TIGR00622        91 FCVDCDVFVHESLHCCP  107 (112)
T ss_pred             cccccchhhhhhccCCc
Confidence            98887777787766644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.12  E-value=0.043  Score=25.78  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=14.5

Q ss_pred             CCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         76 PVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        76 ~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      ||--+.|+-|+..|....++..|....
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            344455555666555555555555433

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=92.11  E-value=0.1  Score=30.45  Aligned_cols=10  Identities=20%  Similarity=0.580  Sum_probs=5.1

Q ss_pred             CCceeccCCC
Q psy10278         77 VKKYQCTFCS   86 (110)
Q Consensus        77 ~~p~~C~~C~   86 (110)
                      +-|..||.||
T Consensus       147 e~P~~CPiCg  156 (166)
T COG1592         147 EAPEVCPICG  156 (166)
T ss_pred             CCCCcCCCCC
Confidence            4445555554

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=91.96  E-value=0.091  Score=33.72  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=25.3

Q ss_pred             CCCceeccC--CCcccccHHHHHhhhhhcCC
Q psy10278         76 PVKKYQCTF--CSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        76 ~~~p~~C~~--C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +++||+|++  |.|.+.....|.-|++-.|.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~  376 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQ  376 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhcccc
Confidence            469999976  99999999999999987773

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=91.89  E-value=0.2  Score=21.51  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=14.4

Q ss_pred             eCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCccc
Q psy10278         53 ACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSC   89 (110)
Q Consensus        53 ~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f   89 (110)
                      .|+.|+..|.-...-     ...+.+...|+.|+..|
T Consensus         4 ~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHHH-----cccCCcEEECCCCCcEe
Confidence            455555555443321     11223345566665544

>KOG4173|consensus

Probab=91.87  E-value=0.08  Score=31.82  Aligned_cols=78  Identities=22%  Similarity=0.376  Sum_probs=56.9

Q ss_pred             ccCCc--ccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhc----------CCCCceec--cCCCccc
Q psy10278         24 FQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH----------MPVKKYQC--TFCSYSC   89 (110)
Q Consensus        24 ~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h----------~~~~p~~C--~~C~~~f   89 (110)
                      +-|++  |...|.....+..|...-.+   -.|..|.+.|...--|..|+.-.          -|.-.|.|  ..|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            66876  77788887777766553332   37899999998888888887642          23345888  4599999


Q ss_pred             ccHHHHHhhhhhcCC
Q psy10278         90 TERFRLKDHTLAKHN  104 (110)
Q Consensus        90 ~~~~~l~~H~~~~~~  104 (110)
                      ........|+...|.
T Consensus       157 kT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  157 KTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhHHHHhcc
Confidence            988888888887664

>KOG2231|consensus

Probab=91.84  E-value=0.78  Score=32.64  Aligned_cols=47  Identities=23%  Similarity=0.412  Sum_probs=27.3

Q ss_pred             eCCCCCCCcCChHHHHHHHHhcCCCCceeccCC------CcccccHHHHHhhhhhcC
Q psy10278         53 ACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC------SYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        53 ~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C------~~~f~~~~~l~~H~~~~~  103 (110)
                      .|..|...|.....+..|++.++    |.|..|      .--|.....|..|.+..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            56667667766666666666443    233333      234556666666666655

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.38  E-value=0.048  Score=33.11  Aligned_cols=17  Identities=41%  Similarity=0.786  Sum_probs=11.8

Q ss_pred             CCccCCcccccccCchh
Q psy10278         22 KPFQCPVCGFTTGRKAT   38 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~   38 (110)
                      +...||+|+..|.++..
T Consensus         4 k~~~CPvC~~~F~~~~v   20 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKV   20 (214)
T ss_pred             CceECCCCCCeeeeeEE
Confidence            44678888888877643

>KOG2186|consensus

Probab=90.82  E-value=0.23  Score=30.85  Aligned_cols=49  Identities=18%  Similarity=0.444  Sum_probs=34.0

Q ss_pred             ccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      |.|..||....-+. +-.|+..-.+ .-|.|..|+..|.. ..+..|..--+
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcc
Confidence            67888888776654 4557776555 46888888888877 45566666433

>KOG2231|consensus

Probab=90.49  E-value=1  Score=32.07  Aligned_cols=72  Identities=21%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             cccCchhHHHHHH-hcCCCCceeCCCCCCCc------CChHHHHHHHHhcCC-CC----ceeccCCCcccccHHHHHhhh
Q psy10278         32 TTGRKATLQLHVR-QHTREKPYACPTCEFKT------GDHNVLRKHVQRHMP-VK----KYQCTFCSYSCTERFRLKDHT   99 (110)
Q Consensus        32 ~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~~------~~~~~l~~h~~~h~~-~~----p~~C~~C~~~f~~~~~l~~H~   99 (110)
                      .|.+...|+.|+. .|-.-....|..-.+.|      .....|..|+..... ++    .-.|..|..-|.....|..|+
T Consensus       123 ~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~  202 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHL  202 (669)
T ss_pred             chhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhh
Confidence            3447788999986 45433222232212222      334567777775332 22    146889999999999999999


Q ss_pred             hhcC
Q psy10278        100 LAKH  103 (110)
Q Consensus       100 ~~~~  103 (110)
                      +..|
T Consensus       203 ~~~h  206 (669)
T KOG2231|consen  203 RFDH  206 (669)
T ss_pred             ccce
Confidence            9766

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=90.44  E-value=0.16  Score=28.20  Aligned_cols=15  Identities=13%  Similarity=0.140  Sum_probs=7.8

Q ss_pred             CceeCCCCCCCcCCh
Q psy10278         50 KPYACPTCEFKTGDH   64 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~   64 (110)
                      .|..|+.||..|...
T Consensus        25 ~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        25 RPAVSPYTGEQFPPE   39 (129)
T ss_pred             CCccCCCcCCccCcc
Confidence            355566665554433

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=90.43  E-value=0.19  Score=21.16  Aligned_cols=10  Identities=50%  Similarity=1.560  Sum_probs=5.5

Q ss_pred             ccCCcccccc
Q psy10278         24 FQCPVCGFTT   33 (110)
Q Consensus        24 ~~C~~c~~~~   33 (110)
                      |.|..||..+
T Consensus         3 ~~C~~CG~i~   12 (34)
T cd00729           3 WVCPVCGYIH   12 (34)
T ss_pred             EECCCCCCEe
Confidence            5566666543

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=90.09  E-value=0.29  Score=30.44  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhcCCCCccCCcccccccCchhHHHHH
Q psy10278          9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHV   43 (110)
Q Consensus         9 ~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~   43 (110)
                      .+..|+- ...+ .-|.|-.|+..|.. .++..|.
T Consensus        17 ~vekH~s-rCrn-~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen   17 QVEKHMS-RCRN-AYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             chHHHHH-hccC-CeeEEeeccccccc-chhhhhh
Confidence            3444552 2333 23455555555555 3344443

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.99  E-value=0.33  Score=20.75  Aligned_cols=10  Identities=20%  Similarity=0.507  Sum_probs=5.3

Q ss_pred             eeccCCCccc
Q psy10278         80 YQCTFCSYSC   89 (110)
Q Consensus        80 ~~C~~C~~~f   89 (110)
                      ..|+.|+..|
T Consensus        26 v~C~~C~~~~   35 (38)
T TIGR02098        26 VRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEE
Confidence            4555555544

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=89.07  E-value=0.27  Score=25.43  Aligned_cols=14  Identities=14%  Similarity=0.458  Sum_probs=8.9

Q ss_pred             CceeccCCCccccc
Q psy10278         78 KKYQCTFCSYSCTE   91 (110)
Q Consensus        78 ~p~~C~~C~~~f~~   91 (110)
                      ..|.|..|+..|+-
T Consensus        52 GIW~C~kCg~~fAG   65 (89)
T COG1997          52 GIWKCRKCGAKFAG   65 (89)
T ss_pred             CeEEcCCCCCeecc
Confidence            45677777766653

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=89.02  E-value=0.28  Score=22.10  Aligned_cols=8  Identities=38%  Similarity=1.530  Sum_probs=3.8

Q ss_pred             eeccCCCc
Q psy10278         80 YQCTFCSY   87 (110)
Q Consensus        80 ~~C~~C~~   87 (110)
                      +.|+.||.
T Consensus        22 ~~Cp~CG~   29 (46)
T PRK00398         22 VRCPYCGY   29 (46)
T ss_pred             eECCCCCC
Confidence            44555543

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=88.98  E-value=0.63  Score=26.96  Aligned_cols=30  Identities=13%  Similarity=0.398  Sum_probs=16.6

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcc
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYS   88 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~   88 (110)
                      .-|.|+.|+..|+....+.         --|.|+.||-.
T Consensus       108 ~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       108 MFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             CeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            3466666666665554442         13666666643

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=88.98  E-value=0.66  Score=26.89  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=25.7

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCc
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKT   61 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~   61 (110)
                      .+..-|.|+.|+..|.....+.         ..|.|+.||...
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML  138 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence            3445699999999888776653         268999999743

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.83  E-value=0.53  Score=20.09  Aligned_cols=11  Identities=27%  Similarity=0.643  Sum_probs=5.9

Q ss_pred             ceeccCCCccc
Q psy10278         79 KYQCTFCSYSC   89 (110)
Q Consensus        79 p~~C~~C~~~f   89 (110)
                      ...|+.|+..|
T Consensus        25 ~v~C~~C~~~f   35 (36)
T PF13717_consen   25 KVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEe
Confidence            45555555544

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=88.78  E-value=0.39  Score=22.97  Aligned_cols=33  Identities=18%  Similarity=0.476  Sum_probs=18.7

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      ..|.|+.||..--....     +--.-..+|.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~-----~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA-----KCRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhh-----hHHHcCCceECCCcCc
Confidence            35788888854322211     1111246899998875

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.61  E-value=0.58  Score=20.73  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=12.2

Q ss_pred             CCceeccCCCcccccH----HHHHhhhhh
Q psy10278         77 VKKYQCTFCSYSCTER----FRLKDHTLA  101 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~----~~l~~H~~~  101 (110)
                      +.-..|..|++.+...    +.|..|++.
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~   42 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKK   42 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence            3445666676666543    566666643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=88.50  E-value=0.56  Score=21.05  Aligned_cols=10  Identities=30%  Similarity=0.866  Sum_probs=4.6

Q ss_pred             eeCCCCCCCc
Q psy10278         52 YACPTCEFKT   61 (110)
Q Consensus        52 ~~c~~c~~~~   61 (110)
                      |.|..|+..+
T Consensus         3 Y~C~~Cg~~~   12 (44)
T smart00659        3 YICGECGREN   12 (44)
T ss_pred             EECCCCCCEe
Confidence            4444444443

present in RNA polymerase I, II and III

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.37  E-value=1.5  Score=25.05  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCccc
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSC   89 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f   89 (110)
                      ...|.|+.|+..|.....+..   ... ...|.|+.||...
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEE
Confidence            345788888877764433211   112 3348888888654

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=88.10  E-value=0.16  Score=23.41  Aligned_cols=13  Identities=23%  Similarity=0.743  Sum_probs=7.9

Q ss_pred             ccCCcccccccCc
Q psy10278         24 FQCPVCGFTTGRK   36 (110)
Q Consensus        24 ~~C~~c~~~~~~~   36 (110)
                      |.|..|+..|...
T Consensus         6 y~C~~Cg~~fe~~   18 (52)
T TIGR02605         6 YRCTACGHRFEVL   18 (52)
T ss_pred             EEeCCCCCEeEEE
Confidence            5566666666544

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.52  E-value=0.76  Score=22.00  Aligned_cols=32  Identities=22%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             CceeCCCCCCC-cCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         50 KPYACPTCEFK-TGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        50 ~~~~c~~c~~~-~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      ..|.|+.||.. ...-..-.    .  -..+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~~CR----k--~~~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCEKCR----K--QSNPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeechhHH----h--cCCceECCCCCC
Confidence            35788888875 22221111    1  136788988875

>smart00614 ZnF_BED BED zinc finger

Probab=87.30  E-value=0.59  Score=21.39  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=11.8

Q ss_pred             eeccCCCcccccH-----HHHHhhhhh
Q psy10278         80 YQCTFCSYSCTER-----FRLKDHTLA  101 (110)
Q Consensus        80 ~~C~~C~~~f~~~-----~~l~~H~~~  101 (110)
                      -.|..|++.++..     +.|..|+..
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~   45 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRR   45 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence            4555565555433     456666653

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.27  E-value=0.2  Score=21.70  Aligned_cols=13  Identities=31%  Similarity=0.720  Sum_probs=7.1

Q ss_pred             ccCCcccccccCc
Q psy10278         24 FQCPVCGFTTGRK   36 (110)
Q Consensus        24 ~~C~~c~~~~~~~   36 (110)
                      |.|+.|+..|...
T Consensus         6 y~C~~Cg~~fe~~   18 (41)
T smart00834        6 YRCEDCGHTFEVL   18 (41)
T ss_pred             EEcCCCCCEEEEE
Confidence            4566666655443

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=86.04  E-value=0.97  Score=26.78  Aligned_cols=29  Identities=17%  Similarity=0.589  Sum_probs=15.7

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYS   88 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~   88 (110)
                      -|.|+.|+..|+....+.         --|.|+.||-.
T Consensus       117 ~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~  145 (178)
T PRK06266        117 FFFCPNCHIRFTFDEAME---------YGFRCPQCGEM  145 (178)
T ss_pred             EEECCCCCcEEeHHHHhh---------cCCcCCCCCCC
Confidence            456666666555544431         24666666643

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.65  E-value=0.18  Score=29.10  Aligned_cols=13  Identities=15%  Similarity=0.378  Sum_probs=7.8

Q ss_pred             eeCCCCCCCcCCh
Q psy10278         52 YACPTCEFKTGDH   64 (110)
Q Consensus        52 ~~c~~c~~~~~~~   64 (110)
                      +.|+.||..|...
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            5666666666443

>KOG2482|consensus

Probab=85.30  E-value=2.3  Score=27.96  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=21.3

Q ss_pred             eeccCCCcccccHHHHHhhhhhcCC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +.|-.|.+.|..+..|+.||+....
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK~H  220 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKKRH  220 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhccC
Confidence            7899999999999999999985443

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=85.28  E-value=0.52  Score=29.55  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHh--cCCCCceeCCCCCCCcCCh------HHHHHHHHh----cCCCCceeccCCC
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQ--HTREKPYACPTCEFKTGDH------NVLRKHVQR----HMPVKKYQCTFCS   86 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~--~~~~~~~~c~~c~~~~~~~------~~l~~h~~~----h~~~~p~~C~~C~   86 (110)
                      .|.+.|.|.+|..-+..-. --.|+.+  -.....|.|..|++.-..+      ..-..|.+.    ....+|+.|++|+
T Consensus       138 hGGrif~CsfC~~flCEDD-QFEHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg  216 (314)
T PF06524_consen  138 HGGRIFKCSFCDNFLCEDD-QFEHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCG  216 (314)
T ss_pred             CCCeEEEeecCCCeeeccc-hhhhhhhhhhhhcccccccccccccchhhhheeeeehhhhhhhcccccccCCCCCCCCCC
Confidence            4566789999976444333 3345542  3344567887776543221      111234332    2345789999999


Q ss_pred             cccccHHHHHhhhh
Q psy10278         87 YSCTERFRLKDHTL  100 (110)
Q Consensus        87 ~~f~~~~~l~~H~~  100 (110)
                      .--..-..|..-.+
T Consensus       217 ~et~eTkdLSmStR  230 (314)
T PF06524_consen  217 YETQETKDLSMSTR  230 (314)
T ss_pred             Ccccccccceeeee
Confidence            76665555544443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=84.88  E-value=0.75  Score=28.09  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=22.0

Q ss_pred             CCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         76 PVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        76 ~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .+..|.|+.|+|.|....-.++|+...|.+
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence            344599999999999999999999887754

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=84.13  E-value=0.81  Score=25.74  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=16.4

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      +....|-+||+.|..   |..|+..||+-.
T Consensus        70 ~d~i~clecGk~~k~---LkrHL~~~~glt   96 (132)
T PF05443_consen   70 PDYIICLECGKKFKT---LKRHLRTHHGLT   96 (132)
T ss_dssp             SS-EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred             cCeeEEccCCcccch---HHHHHHHccCCC
Confidence            344789999998886   488999987643

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF14353 CpXC: CpXC protein

Probab=84.09  E-value=0.16  Score=28.17  Aligned_cols=12  Identities=33%  Similarity=0.833  Sum_probs=7.1

Q ss_pred             cCCcccccccCc
Q psy10278         25 QCPVCGFTTGRK   36 (110)
Q Consensus        25 ~C~~c~~~~~~~   36 (110)
                      .|+.|+..|...
T Consensus         3 tCP~C~~~~~~~   14 (128)
T PF14353_consen    3 TCPHCGHEFEFE   14 (128)
T ss_pred             CCCCCCCeeEEE
Confidence            466676665543

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=83.86  E-value=0.57  Score=24.50  Aligned_cols=14  Identities=14%  Similarity=0.468  Sum_probs=8.6

Q ss_pred             CceeccCCCccccc
Q psy10278         78 KKYQCTFCSYSCTE   91 (110)
Q Consensus        78 ~p~~C~~C~~~f~~   91 (110)
                      ..|.|..|++.|+-
T Consensus        53 GIW~C~~C~~~~AG   66 (90)
T PTZ00255         53 GIWRCKGCKKTVAG   66 (90)
T ss_pred             EEEEcCCCCCEEeC
Confidence            45666666666653

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.31  E-value=1.2  Score=23.99  Aligned_cols=25  Identities=24%  Similarity=0.679  Sum_probs=23.2

Q ss_pred             eec----cCCCcccccHHHHHhhhhhcCC
Q psy10278         80 YQC----TFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        80 ~~C----~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |.|    ..|+....+...+..|...+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    9999999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=82.06  E-value=1.5  Score=17.24  Aligned_cols=18  Identities=22%  Similarity=0.462  Sum_probs=10.1

Q ss_pred             eccCCCcccccHHHHHhhh
Q psy10278         81 QCTFCSYSCTERFRLKDHT   99 (110)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H~   99 (110)
                      .|+.|++.+ ....+..|+
T Consensus         3 ~CPiC~~~v-~~~~in~HL   20 (26)
T smart00734        3 QCPVCFREV-PENLINSHL   20 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHH
Confidence            466666665 334555554

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=82.04  E-value=0.44  Score=26.74  Aligned_cols=59  Identities=24%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCC--hHHHHHHHHhcCCCCceeccCCCcccccHH
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD--HNVLRKHVQRHMPVKKYQCTFCSYSCTERF   93 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~--~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~   93 (110)
                      ....+.|+|.+|.++...+..|          +|-.|  ||.....  -..|+.+-..+.     .|+.|.-+|.+.+
T Consensus        75 F~d~~lYeCnIC~etS~ee~FL----------KPneC--CgY~iCn~Cya~LWK~~~~yp-----vCPvCkTSFKss~  135 (140)
T PF05290_consen   75 FLDPKLYECNICKETSAEERFL----------KPNEC--CGYSICNACYANLWKFCNLYP-----VCPVCKTSFKSSS  135 (140)
T ss_pred             ecCCCceeccCcccccchhhcC----------Ccccc--cchHHHHHHHHHHHHHcccCC-----CCCcccccccccc
Confidence            3456779999998876554433          23333  2222211  144555544443     6888888887543

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=81.30  E-value=0.49  Score=23.70  Aligned_cols=15  Identities=27%  Similarity=0.425  Sum_probs=8.1

Q ss_pred             CCceecc--CCCccccc
Q psy10278         77 VKKYQCT--FCSYSCTE   91 (110)
Q Consensus        77 ~~p~~C~--~C~~~f~~   91 (110)
                      ++.+.|.  .||.+|..
T Consensus        25 ~~Y~qC~N~eCg~tF~t   41 (72)
T PRK09678         25 ERYHQCQNVNCSATFIT   41 (72)
T ss_pred             eeeeecCCCCCCCEEEE
Confidence            4455555  56665543

>TIGR00280 L37a ribosomal protein L37a

Probab=81.17  E-value=0.65  Score=24.32  Aligned_cols=13  Identities=15%  Similarity=0.475  Sum_probs=8.0

Q ss_pred             CceeccCCCcccc
Q psy10278         78 KKYQCTFCSYSCT   90 (110)
Q Consensus        78 ~p~~C~~C~~~f~   90 (110)
                      ..|.|..|++.|+
T Consensus        52 GIW~C~~C~~~~A   64 (91)
T TIGR00280        52 GIWTCRKCGAKFA   64 (91)
T ss_pred             EEEEcCCCCCEEe
Confidence            3466666666665

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=80.89  E-value=1.4  Score=20.71  Aligned_cols=40  Identities=23%  Similarity=0.649  Sum_probs=21.3

Q ss_pred             ceeCCC--CCCCcCChHHHHHHHHhcCCCCceeccC----CCccccc
Q psy10278         51 PYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTF----CSYSCTE   91 (110)
Q Consensus        51 ~~~c~~--c~~~~~~~~~l~~h~~~h~~~~p~~C~~----C~~~f~~   91 (110)
                      +..|+.  |...+ ....|..|+...-..++..|+.    |+..+..
T Consensus         9 ~v~C~~~cc~~~i-~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~   54 (60)
T PF02176_consen    9 PVPCPNGCCNEMI-PRKELDDHLENECPKRPVPCPYSPYGCKERVPR   54 (60)
T ss_dssp             EEE-TT--S-BEE-ECCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred             EeeCCCCCcccce-eHHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence            455655  33323 2346677877666667788888    7776654

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.44  E-value=0.45  Score=19.16  Aligned_cols=19  Identities=32%  Similarity=0.518  Sum_probs=11.4

Q ss_pred             eeccCCCcccccHHHHHhhh
Q psy10278         80 YQCTFCSYSCTERFRLKDHT   99 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~   99 (110)
                      |.|-.|++.|. ...+..|.
T Consensus         1 ~sCiDC~~~F~-~~~y~~Ht   19 (28)
T PF08790_consen    1 FSCIDCSKDFD-GDSYKSHT   19 (28)
T ss_dssp             EEETTTTEEEE-GGGTTT--
T ss_pred             CeeecCCCCcC-cCCcCCCC
Confidence            57888888884 34444454

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-09
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-07
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		6e-07
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-07
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		7e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		8e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		8e-07
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		7e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		1e-05
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		8e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		9e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-04
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-04
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
          KP+ CP CG +  R   L  H R HT EKPY CP C     D   L +H + H   K Y+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 82 CTFCSYSCTERFRLKDH 98
          C  C  S ++R  L+ H
Sbjct: 80 CPECGKSFSQRANLRAH 96

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 22  KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
           KP++CP CG +  + + LQ H R HT EKPY CP C       + L+KH + H   K Y+
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 82  CTFCSYSCTERFRLKDHTLAKH 103
           C  C  S    F   DH L++H
Sbjct: 63  CPECGKS----FSRSDH-LSRH 79

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
          P +C VCG    RK  L+ H+R HT  KPY C TC++   D + L KH++ H   + ++C
Sbjct: 8  PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 83 TFCSYSCTERFRLKDH 98
            C Y+     +L  H
Sbjct: 68 QICPYASRNSSQLTVH 83

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4  YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
          ++D   L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K   
Sbjct: 16 FSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 64 HNVLRKHVQRHM 75
           +  ++H + H+
Sbjct: 75 SDERKRHTKIHL 86

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L  HIR +H   KPFQC +C     ++A+L  H+R HT EKP+AC  C  K    +   +
Sbjct: 22 LDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 4   YADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKT 61
           Y  +  L+ H R+ H   KP+QC    C     R   L+ H R+HT  KP+ C TC+ K 
Sbjct: 18  YFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 62  GDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN 104
              + L+ H + H   K + C +   SC ++F   D  +  HN
Sbjct: 77  SRSDHLKTHTRTHTGEKPFSCRW--PSCQKKFARSDELVRHHN 117

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 4  YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
          ++    L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K   
Sbjct: 16 FSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 64 HNVLRKHVQRHM 75
           +  ++H + H+
Sbjct: 75 SDERKRHTKIHL 86

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++
Sbjct: 21 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 79
Query: 70 HVQRHM 75
          H + H+
Sbjct: 80 HTKIHL 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
          +KPFQC +C     R   L  H+R HT EKP+AC  C  +F   D     + +Q  +P+
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
          L  HIR +H   KPFQC +C     +   L  H+R HT EKP+AC  C  K    +   +
Sbjct: 22 LDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDR 80
Query: 70 HVQRHM 75
          H + H+
Sbjct: 81 HTKIHL 86

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 25 QCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
          +C  CG        L +H+R HT EKPY C  CE+       LR H++RH
Sbjct: 6  ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 3  FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQH--TREKPYACPTC--E 58
           + D+  L +H +  H   KP+ CPVCG    RK  +  HVR H  +  KPY C +C   
Sbjct: 16 IFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG 74
Query: 59 FKTGDHNVLRKHVQR 73
          F   DH  L  H+++
Sbjct: 75 FSRPDH--LNGHIKQ 87

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 27  PVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCTF 84
           P C     + + L+ H+R HT EKPY C    C+++    + L +H ++H   K +QC  
Sbjct: 21  PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 85  CSYSCTERFRLKDHTLAKH 103
           C+ S    F   DH LA H
Sbjct: 81  CNRS----FSRSDH-LALH 94

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 10  LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHN 65
           L  HIR VH   KPF CP   CG    R   L++H R HT EKP+ C    C+ +  + +
Sbjct: 78  LVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 66  VLRKHVQRHMPVK 78
             +KH+  H   K
Sbjct: 137 DRKKHMHVHTSDK 149

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 8   KCLKKHIREVHKR----LKPFQCPVCGFTTGRKATLQLHVRQHT---REKPYACPTCEFK 60
           K L K+  +VH R     KPF+CP CG    RK  L  H  ++     E+ + C  C+  
Sbjct: 16  KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET 75
Query: 61  TGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG 109
                 LR H+  H     Y+C+ CS    ++  L+ H +  H+  + G
Sbjct: 76  FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 4   YADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACP--TCEF 59
           + +   LK+H + VH   KPFQC    CG        L+ HVR HT ++PY CP   C  
Sbjct: 44  FVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102
Query: 60  KTGDHNVLRKHVQRHMPVKKYQ 81
           K      L+ H+  H   K  Q
Sbjct: 103 KFAQSTNLKSHILTHAKAKNNQ 124

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
          F C +CG +  R +TL  H+  H+  +PY C  C  +    + ++KH   H   K ++C 
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 84 FCSYSCTERFRLKDHT 99
           C  + ++   L  H+
Sbjct: 62 VCGKAFSQSSNLITHS 77

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
          LK H+R  H   KP+ C    CG+   R   L  H R+HT  +P+ C  C+  F   DH 
Sbjct: 23 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 66 VLRKHVQRHM 75
           L  H++RH 
Sbjct: 82 AL--HMKRHF 89

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
          LK H+R  H   KP+ C    CG+   R   L  H R+HT  +P+ C  C+  F   DH 
Sbjct: 24 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 66 VLRKHVQRHM 75
           L  H++RH 
Sbjct: 83 AL--HMKRHF 90

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKK 79
          K F C  CG    +   L +H R HT E+PY C  C   F+  DH  LR H   H   K 
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--LRDHRYIHSKEKP 73
Query: 80 YQCTFC 85
          ++C  C
Sbjct: 74 FKCQEC 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	7e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-06
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	2e-05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-05
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	3e-05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	1e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-05
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	6e-05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-05
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	9e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	1e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	2e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	3e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	8e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
           P +C  C ++   KA L++H R H  ++P+ C  C F T   + L KH+++        
Sbjct: 8  HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67

Query: 82 CT 83
           +
Sbjct: 68 SS 69

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.7 bits (99), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 44  RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
              +   P  C  C +       LR H + H   + ++C +CS+   +   L  H + K 
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 50.9 bits (122), Expect = 5e-10
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTR---EKPYACPTCEFKTGDHNVLRKHVQRHMPVK 78
             QC +CGFT  +KA+L  H R+H        + C  C  +    + +  H  +  P  
Sbjct: 6  SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 79 KYQC 82
              
Sbjct: 66 LLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.4 bits (87), Expect = 6e-05
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 46  HTREKPYACPTCEFKTGDHNVLRKHVQRHMPV---KKYQCTFCSYSCTERFRLKDHTLAK 102
            +      C  C F       L  H ++H       ++ C FC     +   +  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 103 H 103
           H
Sbjct: 62  H 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 10 LKKHIREVHKRL---KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
          L  H R  H        F C  CG    +  ++  H  +       A    
Sbjct: 23 LNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 51.0 bits (123), Expect = 5e-10
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 18  HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHM 75
                      CG T  + + L+ H+R HT EKPY C    C +K    + L +H ++H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 76  PVKKYQCTFCSYSCTERFRLKDHTLAKH 103
             + +QC  C       F   DH LA H
Sbjct: 62  GHRPFQCQKCD----RAFSRSDH-LALH 84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
          LK H+R  H   KP+ C    CG+   R   L  H R+HT  +P+ C  C+  F   DH 
Sbjct: 23 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH- 80

Query: 66 VLRKHVQRHM 75
           L  H++RH 
Sbjct: 81 -LALHMKRHF 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 48.7 bits (117), Expect = 7e-09
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 22 KPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDHNVLRKHVQRHM 75
          +PF C  P C     + + LQ+H R+HT EKPY C   +    F   D   L++H +RH 
Sbjct: 5  RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ--LKRHQRRHT 62

Query: 76 PVKKYQCTFCSYSCTERFRLKDH 98
           VK +QC  C    +    LK H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTH 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDHN 65
           LK+H R  H  +KPFQC  C     R   L+ H R HT EKP++C        F   D  
Sbjct: 54  LKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE- 111

Query: 66  VLRKHVQRH 74
            L +H   H
Sbjct: 112 -LVRHHNMH 119

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.9 bits (115), Expect = 8e-09
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY 80
          +KPFQC +C     R   L  H+R HT EKP+AC  C  K    +  ++H      +   
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59

Query: 81 QCTFCSYSCTERFRLKDH 98
                   ++ + L++ 
Sbjct: 60 LEDKVEELLSKNYHLENE 77

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 10  LKKHIRE--VHKRLKPFQCPVCGFTTGRKA-----TLQLHVRQHTREKPYACPTCE---- 58
           L  HI    +H   K F C   G +   +       L +H+R+HT EKP+ C        
Sbjct: 19  LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS 78

Query: 59  FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           +   ++  L+ H++ H   K Y C      C++ F       AKH
Sbjct: 79  YSRLEN--LKTHLRSHTGEKPYMCEH--EGCSKAFSNASD-RAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQ---HTREKPYACPTCE-------FKTGDHNVLRKHV 71
             +   C      +  L  H+     H   K + C           FK      L  H+
Sbjct: 2  TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM--LVVHM 59

Query: 72 QRHMPVKKYQCTF--CSYSCTERFRLKDH 98
          +RH   K ++CTF  C  S +    LK H
Sbjct: 60 RRHTGEKPHKCTFEGCRKSYSRLENLKTH 88

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 47.6 bits (114), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
          LK H+R  H   KP++C    C +   R   L  H R+HT  KP+ C  C   F   DH 
Sbjct: 33 LKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH- 90

Query: 66 VLRKHVQRH 74
           L  H++RH
Sbjct: 91 -LALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.3 bits (108), Expect = 1e-07
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 18  HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCE--FKTGDHNVLRKHVQR 73
            +R+     P C     + + L+ H+R HT EKPY C    C+  F   D   L +H ++
Sbjct: 12  KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDE--LTRHYRK 69

Query: 74  HMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
           H   K +QC  C+      F   DH LA H
Sbjct: 70  HTGAKPFQCGVCN----RSFSRSDH-LALH 94

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 47.0 bits (113), Expect = 2e-08
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
           P +C VCG    RK  L+ H+R HT  KPY C TC++   D + L KH++ H   + ++
Sbjct: 7  GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 82 CTFCSYSCTERFRLKDH 98
          C  C Y+     +L  H
Sbjct: 67 CQICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.0 bits (100), Expect = 1e-06
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          L KH+R +H   +PF+C +C + +   + L +H+R HT +   + 
Sbjct: 52 LNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE--KPYACPTCEFKTGDHNVL 67
               R  H   KP++C +C     +  T+++H+ Q   E    + CP C+      + L
Sbjct: 3  SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 68 RKHVQRH 74
            H+++ 
Sbjct: 62 GVHLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.8 bits (107), Expect = 1e-07
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 38  TLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM--PVKKYQCTFCSYSCTERFRL 95
           +     R H+ EKPY C  C  +      ++ H+ +     V K+ C  C      +  L
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 96  KDHTLAKH 103
             H   +H
Sbjct: 62  GVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.1 bits (100), Expect = 1e-06
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 10 LKKHIREVH--KRLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYA 53
          +K HI      + +  F CP C     RK+ L +H+R QH+   P +
Sbjct: 31 MKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV---- 77
             +CP C      K  L++H R+HT EKP+ CP C         L +H +    +    
Sbjct: 6  SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSE 64

Query: 78 KKYQCTFCSYSCTERFRLKDH 98
          + + C+ C  +   R  L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.3 bits (103), Expect = 7e-07
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 10  LKKHIRE--VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
           L +H     +++  + F C VC  T  R+  L+LH+  HT E PY C +C
Sbjct: 51  LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
          +P+ CPV  C     +  +L  H+R HT +KP+ C  C   F   DH  L  H++ H   
Sbjct: 3  RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60

Query: 78 KKYQCTFCSYSCTERFRLKDH 98
          K + C  C          K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 45.9 bits (110), Expect = 4e-08
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
          L +HIR +H   KPFQC +C     R   L  H+R HT EKP+AC  C
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 35.1 bits (82), Expect = 6e-04
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
          L  HIR  H   KPF C +CG    R    + H + H R+K
Sbjct: 50 LTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 45.6 bits (109), Expect = 3e-08
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR 73
          + F C VC     R+  L+ H R HT EKPY C  C       ++L +H Q+
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 46.0 bits (110), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 10 LKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTC 57
          L  H +  H   K F CP   CG +   K  L+ H++ H+  + Y C   
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 22 KPFQCPV--CGFTTGRKATLQLHVR-QHTREKPYACPTCE----FKTGDHNVLRKHVQRH 74
              C    CG     +  L  H + QH  +K ++CP       F    H  L++H++ H
Sbjct: 6  SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH--LKEHMKLH 63

Query: 75 MPVKKYQCTFC 85
             + Y C F 
Sbjct: 64 SDTRDYICEFS 74

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 9  CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLR 68
                  +    KP+ CP CG +  R   L  H R HT EKPY CP C     D   L 
Sbjct: 8  SSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66

Query: 69 KHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
          +H + H   K Y+C  C  S ++R  L+ H
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAH 96

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.1 bits (108), Expect = 3e-07
 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
           L +H R  H   KP++CP CG +  ++A L+ H R HT EKPYACP C         LR 
Sbjct: 65  LTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123

Query: 70  HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
           H + H   K Y+C  C  S +    L  H
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTH 152

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 17  VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
            H+R     KP++CP CG +  R+  L  H R HT EKPY CP C
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.7 bits (107), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVL 67
                   K  K F C  CG    +   L +H R HT E+PY C  C   F+  DH  L
Sbjct: 5  SSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--L 61

Query: 68 RKHVQRHMPVKKYQCTFC 85
          R H   H   K ++C  C
Sbjct: 62 RDHRYIHSKEKPFKCQEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.1 bits (95), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10  LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           L+ H   +H + KPF+C  CG    +  TL +H   H +      
Sbjct: 61  LRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHNVLRKHVQRH 74
          +P+ CPV  C     R   L  H+R HT +KP+ C  C   F   DH  L  H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 41  LHVRQHTREKPYACP--TCE--FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK 96
           L      + +PYACP  +C+  F   D   L +H++ H   K +QC  C       F   
Sbjct: 9   LLNYVVPKMRPYACPVESCDRRFSRSDE--LTRHIRIHTGQKPFQCRICM----RNFSRS 62

Query: 97  DHTLAKH 103
           DH L  H
Sbjct: 63  DH-LTTH 68

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 44.0 bits (105), Expect = 3e-07
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHM--PV 77
              C +CG        L  H   H+ EKPY+CP C   FK  D   +  HV+ H     
Sbjct: 6  SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR--MSYHVRSHDGSVG 63

Query: 78 KKYQCTFCSYSCTERFRLKDH 98
          K Y C  C    +    L  H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.4 bits (106), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 9  CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLR 68
             +H+  +H  L+P+ C VCG     K  L  H++ HT  KPY C  C  +    +   
Sbjct: 24 QRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH 82

Query: 69 KHVQRHMPVKKYQCTFC 85
          +HV      K Y+    
Sbjct: 83 RHV--TSCTKSYEAAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
          K + C  CG +   K+    H+  H   +PY C  C  K    + L  H++ H  +K Y+
Sbjct: 9  KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67

Query: 82 CTFC 85
          C  C
Sbjct: 68 CNIC 71

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 10  LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHN 65
           L  HIR VH   KPF CP   CG    R   L++H R HT EKP+ C    C+ +  + +
Sbjct: 78  LVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136

Query: 66  VLRKHVQRHMPVKKYQCT 83
             +KH+  H   K    +
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 21/80 (26%), Gaps = 13/80 (16%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA---------CPTCE--FKTGDHN 65
          + +         C  T      L  HV       P           CP     FK     
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK- 77

Query: 66 VLRKHVQRHMPVKKYQCTFC 85
           L  H++ H   K + C F 
Sbjct: 78 -LVNHIRVHTGEKPFPCPFP 96

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.1 bits (100), Expect = 1e-06
 Identities = 8/40 (20%), Positives = 11/40 (27%)

Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
          +     F C  CG T  R+ T+  H               
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 40.2 bits (95), Expect = 5e-06
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE----KPYACPTCEFKTGDHN 65
               R  H   KP+ C  C  T  +K  L +H +++         + C  C       N
Sbjct: 3  SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 66 VLRKHVQRHMPVKKYQCTFC 85
           + +H          +    
Sbjct: 62 TMARHADNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 38 TLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH----MPVKKYQCTFCSYSCTERF 93
          +     R HT EKPYAC  C+       +L  H +R+         + C+ C  + T R 
Sbjct: 2  SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 94 RLKDH 98
           +  H
Sbjct: 62 TMARH 66

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVR--QHTREKPYACPTCEFK---TGDHNVLRK 69
            +      F+C  C         L +H+    H R+  +       K         L +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70

Query: 70 HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
             +    K  +C +C +S      L  H
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 41.7 bits (99), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
                 +H   KP+ C  CG    R + L  H R HT EKPY C  C
Sbjct: 2  SSGSSG-IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 37.8 bits (89), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 9  CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
           L +H R VH   KP++C  CG    + + L  H R HT      
Sbjct: 29 ILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
               +P+ C  CG   GR + L  H+++H REK    
Sbjct: 6  SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.4 bits (98), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVR--QHTREKPYACPTC--EFKTGDHNVLRKHVQRH 74
            ++C VC       +    H         K Y CP C  EF   D+  +  HV+  
Sbjct: 9  HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN--MTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 10 LKKHIR-EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR 48
            +H      + +K + CP C     RK  +  HV+   +
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPFQC  CG       +L  H+R H R  P   
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.3 bits (98), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
            +      +  + ++C  CG +    + L  H R HT EKPY C  C
Sbjct: 6  SGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 35.1 bits (82), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPY 52
          L KH R  H   KP++C  CG    +++ L  H R HT   P 
Sbjct: 34 LSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 40.3 bits (95), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTC 57
               KP+ C  CG    R   L  H++Q HT E+P+ C   
Sbjct: 6  SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQR-HMPVKKYQCTFC 85
               +  KPY C +C   F   DH  L  H+++ H   + ++C   
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDH--LNGHIKQVHTSERPHKCQVW 47

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF C  C      K+ L +H + H  EKP   
Sbjct: 9  KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK 79
          + C  CG    + + L+ H+R HT  +PY C  C F       L KH++     KK
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 9   CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDH 64
            ++KH+   H   +   C  CG      + L+ H   HT EKP+ C        F    +
Sbjct: 22  AMRKHLH-THGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 79

Query: 65  NVLRKHVQRHMPVKKYQCTF--CSYSCTERFRLKDH 98
             LR HV+ H   + Y C F  C+    +   LK H
Sbjct: 80  --LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KP+ C  CG T  +K+ L  H R HT EKP   
Sbjct: 2  SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.5 bits (96), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
          L  H+  +H   +P+ C  CG    +K+ ++ H   HT EKP+ C  C
Sbjct: 17 LSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 35.1 bits (82), Expect = 4e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQ 81
          F C +CG +  R +TL  H+  H+  +PY C  C   F       ++KH   H   K ++
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSD--MKKHTFIHTGEKPHK 59

Query: 82 CTFC 85
          C  C
Sbjct: 60 CQVC 63

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          +PF+C  CG   GR++ L  H+R H+REK    
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.1 bits (95), Expect = 5e-06
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
             H   +    KP++C  C  +   K  L  H   HT EKPY C  C
Sbjct: 5  HHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (87), Expect = 7e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPY 52
          L  H   VH   KP++C +CG    R A L+ H R H+ EKPY
Sbjct: 33 LASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KP++C  C      K+ L +H R HT E   + 
Sbjct: 2  SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KPF+C +CG +   ++ L  H   HT EKP   
Sbjct: 2  SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-06
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    P++C  CG    RK  L  H R H  EKP   
Sbjct: 2  SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.7 bits (93), Expect = 8e-06
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQR 73
            R++   C    CG T  + + L+ H R HT EKP++C    CE +    + L +H + 
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

Query: 74 H 74
          H
Sbjct: 72 H 72

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
            +  KP+QC  CG +      L  H   HTREKP   
Sbjct: 6  SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   K ++C VCG    + + LQ H R HT EKP   
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    +P++C  CG     K++L  H R HT EKP   
Sbjct: 2  SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 38.7 bits (91), Expect = 1e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C  C  T   K+ L +H R HT  KP   
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KP++C VC       A+L  H R H+ EKP   
Sbjct: 2  SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP +C  CG     K+ L +H R H  +K    
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  CG    R++ L +H + HT EKP   
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  C      K+ L +H R HT EKP   
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG    RK+ L +H + HT E+    
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C  CG     K+ L +H+R H+ EKP   
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          K F+C  CG    RK+TL +H + HT EKP   
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 38.0 bits (89), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
           P+ C  CG +  ++ +L +H R  ++  P +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C VC     +KA L  H + HT EKP   
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  C  T  +   L  H R HT E+    
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           P++C  C  +   K  L +H R HTREKP   
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    R+  L +H R H  EK    
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          + ++C  CG    RK+TL +H R HT EKP   
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          K + C  CG +  R   L  H R H+ EKP   
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C VCG      A L  H+R HT+E     
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  CG +   K  L  H R HT EK    
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPFQC  CG    + + L  H R HT EKP   
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP++C +CG +  +K+ L +H + HT EKP   
Sbjct: 2  SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           PF C  CG     K  L +H + HT E+P   
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           P++C  CG    RK  L  H R H  E   + 
Sbjct: 9  NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KP++C VCG     + +L +H R H+ +KP   
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
               KPF+C  CG      +    H R H+ EKP   
Sbjct: 6  SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C  CG     K+ L +H R HT E   + 
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KPF C  CG        L  H R HT EKP   
Sbjct: 3  SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 42  HVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKK---YQCTFCSYSCTERFRLKD 97
           + +    E  Y C  C F+T D N+   HV   H  V     Y C  C++       L +
Sbjct: 9   NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68

Query: 98  HTLAKHNPGTD 108
           H   K++PG +
Sbjct: 69  HN-LKYHPGEE 78

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVR-QHT---REKPYACPTCEFKTGDHNVLR 68
          H ++  K    ++C  C F T        HV  +H        Y C  C F T  ++ L 
Sbjct: 8  HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67

Query: 69 KHVQRHMP 76
          +H  ++ P
Sbjct: 68 EHNLKYHP 75

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                 +  +C  CG    + +    H R HT EKP   
Sbjct: 4  GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          K  QC  CG     K+ L  H R HT EKP   
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KPF+C  CG +    + L  H R HT EKP   
Sbjct: 2  SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP+ C  CG +  +K+ L  H R HT EKP   
Sbjct: 3  SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 37.2 bits (87), Expect = 4e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
          + ++C  CG +  +K +L LH R HT   P +
Sbjct: 9  RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP++C  CG    R+  L  H R HT EK    
Sbjct: 2  SSGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          K ++C  C     + ++L+LH   H  EKP   
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 37.3 bits (87), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 13 HIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPT 56
                   KPF C  P CG+   R   L  H R H+  KP    +
Sbjct: 3  SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 42 HVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
               T EKP+AC  P C ++    + L +H + H  VK    +
Sbjct: 3  SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          + ++C  CG    +K+TL +H R H  EKP   
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
          KP+ C +CG       TL+ H+R HT   P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG     +++L +H   H+ EKP   
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C VC  +    ++L +H R HT EKP   
Sbjct: 3  SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG     +  L  H   HT EKP   
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG     K  L +H + HT E+P   
Sbjct: 3  SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP++C  CG +  +K+ L +H R HT E P   
Sbjct: 2  SSGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.7 bits (86), Expect = 5e-05
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           P++C  CG    RK  L  H + H+ +   + 
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  CG    + + L  H R HT EKP   
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                   KP++C  CG    + + L  H   HT EKP   
Sbjct: 2  SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-05
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG    +KA L  H R HT EKP   
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 7e-05
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP +C  CG +    + L +H R HT E P   
Sbjct: 2  SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-05
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP++C VCG      + L  H   H+ E+P   
Sbjct: 2  SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 36.4 bits (85), Expect = 7e-05
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
               KP+ C  CG +    + L  H R H+ EKP   
Sbjct: 6  SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 26  CPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
              CG    +   L++H   HT++ PY C    C+ +    + L++H + H      +  
Sbjct: 6   FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 64

Query: 84  FCSYSCTERFRLKDHTLAKH 103
               SC+   +     L   
Sbjct: 65  ---DSCSFVGKTWTLYLKHV 81

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 7e-05
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG +   K+ L++H + HT E+    
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  CG    +   L  H+R HT EKP   
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 15/33 (45%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C  CG   G  A L  H R HT EKP   
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          K F+C  C  T  + ++L +H R HT EKP   
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KPF+C  CG +  ++  L  H R HT EKP   
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          +P+ C VCG     ++ L  H + HT EKP   
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG    +   L  H R HT EKP   
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 9e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP+QC  CG    + + L  H R HT EKP   
Sbjct: 2  SSGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 9e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP+ C  CG     ++ L  H + HT++KP   
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
          KP++C  CG    +K +L +H+R HT   P +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG      + L  H   HT EKP   
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG     +++L  H   HT +KP   
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
               KP++C  CG     K+ L +H R H      + 
Sbjct: 6  SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    K ++C  CG    R + L  H + HT EKP   
Sbjct: 2  SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG      + L  H R HT EKP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    R   L  H R HT  +P   
Sbjct: 3  SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP+ C  CG      ++L  H   HT EKP   
Sbjct: 3  SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHN 65
          L+ H+   H   KPF C    C         L  H   HT EK + C    C+ +     
Sbjct: 30 LQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 88

Query: 66 VLRKHVQRH 74
           ++KH  R 
Sbjct: 89 NMKKHFNRF 97

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    + + L  H   HT EKP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    + + L  H R HT  KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                    KP+ C  CG      + LQ H R HT EKP   
Sbjct: 2  SSGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    R + L  H   HT EKP   
Sbjct: 3  SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG    + + L  H R HT  KP   
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          KP++C  CG     ++ L  H + HT EKP   
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG   G  ++   H R HT ++P   
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    + + L  H R HT EKP   
Sbjct: 3  SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    + + L  H R HT EKP   
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                  KP++C  CG    + + L  H   HT EKP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 35.2 bits (80), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
            KP++CP C + +  KA L +H+R+HT EK
Sbjct: 6  SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
          KP++C  CG    + A L+ HV  HT   P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 42 HVRQHTREKPYACPTCE--FKTGDHNVLRKHVQRHMPV 77
            R  T  KP+ CP C+  F   DH  L  H +RHM V
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDH--LALHRKRHMLV 37

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
          +P +C  CG +  + A L  H R HT EKP   
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.5 bits (80), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
                 K   C  CG      + L++H R H  EK    
Sbjct: 4  GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 34.5 bits (79), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
           +  K   C +CG        L  H   H+ EKPY+    
Sbjct: 7  GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 35.3 bits (80), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 22  KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
           + +QC +C            H R         CP C  +     + ++H +     KK  
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-ESKCEYKKLT 71

Query: 82  CTFCSYSCTERFRLKDHTLAKHN 104
           C  C  +    F +  H +  HN
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVHN 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.92
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.91
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.91
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.9
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.89
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.86
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.82
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.81
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.79
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.76
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.75
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.74
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.74
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.74
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.74
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.72
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.72
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.71
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.71
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.7
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.7
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.68
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.66
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.63
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.62
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.62
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.6
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.59
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.59
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.58
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.58
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.53
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.49
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.48
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.44
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.44
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.43
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.43
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.43
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.42
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.42
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.42
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.41
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.41
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.41
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.4
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.4
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.4
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.4
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.39
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.39
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.39
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.35
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.35
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.34
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.34
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.33
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.33
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.33
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.32
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.3
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.3
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.28
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.26
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.23
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.23
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.22
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.21
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.2
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.18
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.17
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.17
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.16
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.16
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.16
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.15
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.13
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.1
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.04
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.03
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.0
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.0
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.93
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.92
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.91
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.89
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.87
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.84
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.84
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.82
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.81
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.81
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.8
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.8
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.8
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.74
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.74
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.74
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.73
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.72
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.72
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.7
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.7
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.67
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.67
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.64
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.05
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.61
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.03
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.99
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.56
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.55
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.52
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.5
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.5
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.5
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.49
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.47
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.47
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.47
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.44
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.44
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.41
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.4
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.38
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.73
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.36
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.32
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.54
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.11
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.07
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.88
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.81
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.49
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.92
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.83
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.74
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.52
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.78
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.53
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.39
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.45
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	90.71
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	90.64
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	90.17
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	89.79
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	89.52
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.28
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	87.35
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	86.66
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	86.18
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	86.0
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	85.91
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	85.86
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	84.61
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	83.77
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	83.17
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.5
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	82.37
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	81.55
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	81.11
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	80.55

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=7.8e-28  Score=133.46  Aligned_cols=92  Identities=24%  Similarity=0.334  Sum_probs=87.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHH
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRL   95 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l   95 (110)
                      .++.|+++|.|++|++.|.....|..|++.|.++++|.|..|++.|.....|..|+.+|++++||.|+.|++.|...+.|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCCCCC
Q psy10278         96 KDHTLAKHNPGT  107 (110)
Q Consensus        96 ~~H~~~~~~~~~  107 (110)
                      ..|++++|++.+
T Consensus        95 ~~H~~~hh~~~p  106 (133)
T 2lt7_A           95 SSHIKSVHSQDP  106 (133)
T ss_dssp             HHHHHHHTCCCT
T ss_pred             HHHhHHhcCCCC
Confidence            999999998754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=7.7e-26  Score=123.74  Aligned_cols=106  Identities=28%  Similarity=0.483  Sum_probs=97.8

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHh---cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQ---HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~---~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.+...|..|+..   +.+.++|.|..|++.|.....|..|++.|.+++
T Consensus        15 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (124)
T 2dlq_A           15 KKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM   93 (124)
T ss_dssp             CCCSSHHHHHHHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSC
T ss_pred             CcCCCHHHHHHHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            57999999999995 79999999999999999999999999985   577889999999999999999999999999999


Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      ||.|..|++.|.....|..|++..|....+
T Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~s  123 (124)
T 2dlq_A           94 PYKCSSCSQQFMQKKDLQSHMIKLHSGPSS  123 (124)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHTSSCSSC
T ss_pred             CccCCCccchhCCHHHHHHHHHHHCCCCCC
Confidence            999999999999999999999876655443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=2e-26  Score=134.38  Aligned_cols=105  Identities=33%  Similarity=0.594  Sum_probs=86.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.+...|..|++.|.++++|.|..|++.|.....|..|++.|.+++||.
T Consensus        85 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  163 (190)
T 2i13_A           85 KSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK  163 (190)
T ss_dssp             CEESCHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE
T ss_pred             CccCCHHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeE
Confidence            56778888888884 68888888888888888888888888888888888889889998888888889988888888999


Q ss_pred             ccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         82 CTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        82 C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      |+.|++.|.....|..|+++|+++.+
T Consensus       164 C~~C~~~f~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          164 CPECGKSFSRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHTTC-----
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            99999999999999999988887654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.93  E-value=1.2e-25  Score=122.26  Aligned_cols=100  Identities=30%  Similarity=0.527  Sum_probs=95.5

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCc
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK   79 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p   79 (110)
                      +.|.+...|..|++ .|.++++|.|+  .|++.|.+...|..|++.|.++++|.|..|++.|.....|..|++.|.+++|
T Consensus        16 ~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           16 KRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             CCBSCHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             chhCCHHHHHHHHH-hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            67999999999995 79999999999  7999999999999999999999999999999999999999999999999999


Q ss_pred             eec--cCCCcccccHHHHHhhhhhc
Q psy10278         80 YQC--TFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        80 ~~C--~~C~~~f~~~~~l~~H~~~~  102 (110)
                      |.|  +.|++.|.....|..|+++|
T Consensus        95 ~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           95 FSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHhcC
Confidence            999  88999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=1.1e-25  Score=123.20  Aligned_cols=105  Identities=27%  Similarity=0.489  Sum_probs=94.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHHHhcCCCCc
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKK   79 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~~p   79 (110)
                      +.|.+...|..|++ .| ++++|.|+.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|++.|.+++|
T Consensus        15 ~~f~~~~~l~~H~~-~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           15 KMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             CEESSHHHHHHHHG-GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CccCCHHHHHHHHH-Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence            67999999999994 67 8889999999999999999999999999999999986  99999999999999999999999


Q ss_pred             eecc--CCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         80 YQCT--FCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        80 ~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      |.|+  .|++.|.....|..|+++|+++.+.
T Consensus        93 ~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            9996  5999999999999999999987654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=7.3e-25  Score=124.11  Aligned_cols=107  Identities=25%  Similarity=0.420  Sum_probs=99.3

Q ss_pred             cchhcHHHHHHHHHHHhcCCCC--------ccCCcccccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHH
Q psy10278          2 NFYADIKCLKKHIREVHKRLKP--------FQCPVCGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHV   71 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~--------~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~   71 (110)
                      +.|.+...|..|++..|.++.+        |.|+.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+
T Consensus        33 ~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~  112 (155)
T 2rpc_A           33 RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK  112 (155)
T ss_dssp             CCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHH
Confidence            6799999999999655877665        899999999999999999999999999999998  999999999999999


Q ss_pred             HhcCCCCceeccC--CCcccccHHHHHhhhhhcCCCCCC
Q psy10278         72 QRHMPVKKYQCTF--CSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        72 ~~h~~~~p~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      +.|.+++||.|..  |++.|.....|..|+++|+++.+.
T Consensus       113 ~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A          113 RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             TTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCS
T ss_pred             HhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999997  999999999999999999987653

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.92  E-value=5.2e-25  Score=128.39  Aligned_cols=105  Identities=35%  Similarity=0.638  Sum_probs=93.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.+...|..|+..|.++++|.|..|++.|.....|..|++.|.+++||.
T Consensus        57 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  135 (190)
T 2i13_A           57 KSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK  135 (190)
T ss_dssp             CEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             chhCCHHHHHHHHH-hcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeE
Confidence            56888889999994 78888899999999999999999999999888889999999999999999999999999999999


Q ss_pred             ccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         82 CTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        82 C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      |+.|++.|.....|..|+++|+++.+
T Consensus       136 C~~C~~~f~~~~~L~~H~~~H~~~~~  161 (190)
T 2i13_A          136 CPECGKSFSREDNLHTHQRTHTGEKP  161 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            99999999999999999998887654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.7e-24  Score=113.71  Aligned_cols=90  Identities=31%  Similarity=0.654  Sum_probs=86.0

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHh
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKD   97 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~   97 (110)
                      ..++++|.|+.|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+..|.+++||.|..|++.|.....|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCC
Q psy10278         98 HTLAKHNPGT  107 (110)
Q Consensus        98 H~~~~~~~~~  107 (110)
                      |+++|+++..
T Consensus        83 H~~~h~~~~~   92 (96)
T 2dmd_A           83 HLRSHTGDSG   92 (96)
T ss_dssp             HHTTCCSCCC
T ss_pred             HHHHhcCCCC
Confidence            9999998764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.3e-24  Score=122.92  Aligned_cols=102  Identities=30%  Similarity=0.540  Sum_probs=87.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHH-HhcCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHV-QRHMP   76 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~h~~   76 (110)
                      +.|.+...|..|++ .|.+++||.|++  |++.|.....|..|++.|.++++|.|+.  |++.|.....|..|+ ..|.+
T Consensus        47 ~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           47 RPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             CCCSSHHHHHHHTH-HHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             hhhhhHHHHHHHHH-hcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            56888888888884 688888888985  9999988888999988888888899987  999998888888898 68888


Q ss_pred             CCceeccC--CCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTF--CSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~--C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ++||.|..  |++.|.....|..|++++|+
T Consensus       126 ~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            88899987  99999999999999888875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.91  E-value=2.3e-24  Score=112.01  Aligned_cols=87  Identities=25%  Similarity=0.532  Sum_probs=80.6

Q ss_pred             CCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHh
Q psy10278         20 RLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKD   97 (110)
Q Consensus        20 ~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~   97 (110)
                      +++||.|+  .|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            46799998  5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCC
Q psy10278         98 HTLAKHNPG  106 (110)
Q Consensus        98 H~~~~~~~~  106 (110)
                      |+++|+++.
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            999998764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.91  E-value=1.4e-23  Score=112.13  Aligned_cols=90  Identities=28%  Similarity=0.495  Sum_probs=85.5

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhh
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH   98 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H   98 (110)
                      ..+++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..|.+++||.|..|++.|.....|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCC
Q psy10278         99 TLAKHNPGTD  108 (110)
Q Consensus        99 ~~~~~~~~~~  108 (110)
                      +++|+++.+.
T Consensus        93 ~~~H~~~~~~  102 (106)
T 2ee8_A           93 KTLHMQTSSP  102 (106)
T ss_dssp             HHHTTSCCCC
T ss_pred             HHHhCCCCCC
Confidence            9999987653

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=2.5e-23  Score=109.09  Aligned_cols=88  Identities=26%  Similarity=0.484  Sum_probs=81.7

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCC--CceeccCCCcccccHHHHH
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV--KKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~--~p~~C~~C~~~f~~~~~l~   96 (110)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++  +||.|..|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             hhhhhcCCCC
Q psy10278         97 DHTLAKHNPG  106 (110)
Q Consensus        97 ~H~~~~~~~~  106 (110)
                      .|++..|...
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9997544433

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.90  E-value=7.1e-24  Score=108.33  Aligned_cols=82  Identities=26%  Similarity=0.547  Sum_probs=78.7

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      ||.|+.|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+..|.+++||.|..|++.|.....|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy10278        103 HN  104 (110)
Q Consensus       103 ~~  104 (110)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            74

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=2e-23  Score=115.72  Aligned_cols=90  Identities=19%  Similarity=0.336  Sum_probs=83.7

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC---
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK---   78 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~---   78 (110)
                      +.|.+...|..|++ +|.+++||.|+.|++.|.....|..|+++|++++++.|..|++.|.....|..|++.+++++   
T Consensus        30 k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~  108 (133)
T 2lt7_A           30 RSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSG  108 (133)
T ss_dssp             CEESCHHHHHHHHH-HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTS
T ss_pred             CCcCCHHHHHHHHH-HcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCC
Confidence            68999999999995 79999999999999999999999999999999999999999999999999999999887654   


Q ss_pred             ---ceeccCCCcccccH
Q psy10278         79 ---KYQCTFCSYSCTER   92 (110)
Q Consensus        79 ---p~~C~~C~~~f~~~   92 (110)
                         +|.|..|++.|...
T Consensus       109 ~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A          109 DSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SSCCEEECCCCSSCCCC
T ss_pred             CCCCeecCCCCchhhhc
Confidence               58999999988754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.8e-23  Score=111.62  Aligned_cols=87  Identities=24%  Similarity=0.429  Sum_probs=83.5

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHH
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~   96 (110)
                      .|.++++|.| .|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            4788999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCC
Q psy10278         97 DHTLAKHN  104 (110)
Q Consensus        97 ~H~~~~~~  104 (110)
                      .|++.++.
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            99998774

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=4.8e-23  Score=120.05  Aligned_cols=104  Identities=25%  Similarity=0.434  Sum_probs=60.1

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccC--CcccccccCchhHHHHHHhcCCCCceeCC--CCCCCcCChHHHHHHH-Hhc-C
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHV-QRH-M   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~-~~h-~   75 (110)
                      +.|.+...|..|++ .|.++++|.|  +.|++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+ ..| .
T Consensus        22 ~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  100 (190)
T 1tf6_A           22 AAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI  100 (190)
T ss_dssp             CBCSSHHHHHHHHH-HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSST
T ss_pred             chhCCHHHHHHHHH-hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            44556666666663 4556666666  55666666666666666666665566665  5666666666666665 344 2


Q ss_pred             CCCceec--cCCCcccccHHHHHhhhhhcCCCC
Q psy10278         76 PVKKYQC--TFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        76 ~~~p~~C--~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ++++|.|  ..|++.|.....|..|+++|+++.
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~  133 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL  133 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGGGSSSC
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHHhCCCC
Confidence            4455555  555555555555555555555443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=1.7e-22  Score=117.73  Aligned_cols=102  Identities=26%  Similarity=0.454  Sum_probs=95.5

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCC--cccccccCchhHHHHH-Hhc-CCCCceeC--CCCCCCcCChHHHHHHHHhcC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHV-RQH-TREKPYAC--PTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~--~c~~~~~~~~~l~~h~-~~~-~~~~~~~c--~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      +.|.+...|..|+ ..|.++++|.|+  .|++.|.+...|..|+ ..| .+..+|.|  ..|++.|.....|..|++.|.
T Consensus        52 ~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           52 KGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             CCCSSHHHHHHHH-TTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             hhhCCHHHHHHHH-HHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence            6799999999999 589999999999  8999999999999999 567 46789999  889999999999999999999


Q ss_pred             CCCceeccC--CCcccccHHHHHhhhhhcCC
Q psy10278         76 PVKKYQCTF--CSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        76 ~~~p~~C~~--C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +++||.|+.  |++.|.....|..|+++|++
T Consensus       131 ~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            999999988  99999999999999999876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=5.6e-25  Score=119.12  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHh--cCCCCcee-CCCCCCCc--CChHHHHHHHHhcCCCCceec
Q psy10278          8 KCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQ--HTREKPYA-CPTCEFKT--GDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus         8 ~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~--~~~~~~~~-c~~c~~~~--~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ..|..|+ .+|.+++||.|+.|++.|.....|..|++.  |.+.+++. |..|++.|  .....|..|++.|.+++||.|
T Consensus         5 ~~l~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            5 SSGKLYG-SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCC-CCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             hhhhhhe-eeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            4567788 479999999999999999999999999998  77666654 99999988  888999999999999999999


Q ss_pred             cCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         83 TFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        83 ~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      ..|++.|.....|..|++.++....
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCccc
Confidence            9999999999999999999886543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.4e-22  Score=114.58  Aligned_cols=106  Identities=25%  Similarity=0.393  Sum_probs=95.5

Q ss_pred             cchhcHHHHHHHHHH--HhcCCCCccCCcc-----cccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHHH
Q psy10278          2 NFYADIKCLKKHIRE--VHKRLKPFQCPVC-----GFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQ   72 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~--~~~~~~~~~C~~c-----~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~   72 (110)
                      +.|.+...|..|++.  +|.++++|.|++|     ++.|.....|..|++.|.+.++|.|..  |++.|.....|..|++
T Consensus        11 ~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~   90 (155)
T 2gli_A           11 QEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR   90 (155)
T ss_dssp             CBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHH
Confidence            679999999999964  5778899998753     489999999999999999999999985  9999999999999999


Q ss_pred             hcCCCCceeccC--CCcccccHHHHHhhh-hhcCCCCC
Q psy10278         73 RHMPVKKYQCTF--CSYSCTERFRLKDHT-LAKHNPGT  107 (110)
Q Consensus        73 ~h~~~~p~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~  107 (110)
                      .|.+++||.|+.  |++.|.....|..|+ .+|.++.+
T Consensus        91 ~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            999999999998  999999999999999 67766543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.7e-22  Score=108.13  Aligned_cols=88  Identities=17%  Similarity=0.339  Sum_probs=81.2

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHH
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~   96 (110)
                      +|.++++|.|..|++.|.....|..|++.|  .++|.|..|++.|.....|..|+. |.+++||.|..|++.|.....|.
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~   86 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIW   86 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHH
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHH
Confidence            578899999999999999999999999998  468999999999999999999996 99999999999999999999999


Q ss_pred             hhhh-hcCCCCC
Q psy10278         97 DHTL-AKHNPGT  107 (110)
Q Consensus        97 ~H~~-~~~~~~~  107 (110)
                      .|++ .|.++.+
T Consensus        87 ~H~~~~H~~~~~   98 (107)
T 1wjp_A           87 RHQVEVHNQNNM   98 (107)
T ss_dssp             HHHHHTSCCCCC
T ss_pred             HHHHHHcCCCCC
Confidence            9998 6666544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=4.6e-22  Score=108.01  Aligned_cols=89  Identities=34%  Similarity=0.635  Sum_probs=84.2

Q ss_pred             cCCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHH
Q psy10278         19 KRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFR   94 (110)
Q Consensus        19 ~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~   94 (110)
                      .++++|.|..  |++.|.....|..|++.|.+.++|.|.  .|++.|.....|..|++.|.+++||.|..|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4678999997  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCC
Q psy10278         95 LKDHTLAKHNPGT  107 (110)
Q Consensus        95 l~~H~~~~~~~~~  107 (110)
                      |..|+++|+++.+
T Consensus        82 l~~H~~~h~~~~~   94 (119)
T 2jp9_A           82 LKTHTRTHTGEKP   94 (119)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHhcCCCC
Confidence            9999999987654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.5e-21  Score=105.68  Aligned_cols=89  Identities=26%  Similarity=0.479  Sum_probs=83.5

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHh---cCCCCceeccCCCcccccHHHH
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR---HMPVKKYQCTFCSYSCTERFRL   95 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---h~~~~p~~C~~C~~~f~~~~~l   95 (110)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..   +.++++|.|+.|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            5678999999999999999999999999999999999999999999999999995   5788999999999999999999


Q ss_pred             HhhhhhcCCCCC
Q psy10278         96 KDHTLAKHNPGT  107 (110)
Q Consensus        96 ~~H~~~~~~~~~  107 (110)
                      ..|+++|+++.+
T Consensus        83 ~~H~~~h~~~~~   94 (124)
T 2dlq_A           83 RLHMVSHTGEMP   94 (124)
T ss_dssp             HHHHHHHSSSCS
T ss_pred             HHHHHHcCCCCC
Confidence            999999987654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=102.41  Aligned_cols=85  Identities=28%  Similarity=0.587  Sum_probs=80.1

Q ss_pred             CCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHH
Q psy10278         20 RLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRL   95 (110)
Q Consensus        20 ~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l   95 (110)
                      .+++|.|..  |++.|.....|..|++.|.+.++|.|+  .|++.|.....|..|++.|.+++||.|..|++.|.....|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            456799997  999999999999999999999999996  6999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCC
Q psy10278         96 KDHTLAKHN  104 (110)
Q Consensus        96 ~~H~~~~~~  104 (110)
                      ..|+++|++
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.86  E-value=8e-22  Score=95.08  Aligned_cols=58  Identities=21%  Similarity=0.438  Sum_probs=50.9

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ++||.|..|++.|...+.|..|+++|++++||.|..|+++|...+.|..|+++|+++.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6788999999999999999999999999999999999999999999999999888764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.86  E-value=1.7e-21  Score=100.82  Aligned_cols=82  Identities=29%  Similarity=0.584  Sum_probs=78.4

Q ss_pred             CCCccCCc--ccccccCchhHHHHHHhcCCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHH
Q psy10278         21 LKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        21 ~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~   96 (110)
                      ..+|.|+.  |++.|.....|..|++.|.+.++|.|+  .|++.|.....|..|++.|.+++||.|+.|++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            46799999  999999999999999999999999997  69999999999999999999999999999999999999999


Q ss_pred             hhhhhc
Q psy10278         97 DHTLAK  102 (110)
Q Consensus        97 ~H~~~~  102 (110)
                      .|+++|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            999887

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=1.6e-20  Score=102.58  Aligned_cols=87  Identities=22%  Similarity=0.456  Sum_probs=79.8

Q ss_pred             CCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccC--CCcccccHHHH
Q psy10278         20 RLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTF--CSYSCTERFRL   95 (110)
Q Consensus        20 ~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~--C~~~f~~~~~l   95 (110)
                      ++++|.|+  .|++.|.+...|..|++.| +.++|.|..|++.|.....|..|+..|.+++||.|..  |++.|.....|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            35689999  8999999999999999999 8889999999999999999999999999999999986  99999999999


Q ss_pred             HhhhhhcCCCCC
Q psy10278         96 KDHTLAKHNPGT  107 (110)
Q Consensus        96 ~~H~~~~~~~~~  107 (110)
                      ..|+++|+++.+
T Consensus        81 ~~H~~~h~~~~~   92 (124)
T 1ubd_C           81 RTHVRIHTGDRP   92 (124)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHhCCCCc
Confidence            999999988654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.83  E-value=2.6e-22  Score=103.99  Aligned_cols=84  Identities=25%  Similarity=0.425  Sum_probs=79.3

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhh
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTL  100 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~  100 (110)
                      ++||.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+..+++ .++.|..|++.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            57899999999999999999999999999999999999999999999999998885 89999999999999999999999


Q ss_pred             hcCCC
Q psy10278        101 AKHNP  105 (110)
Q Consensus       101 ~~~~~  105 (110)
                      ..|+.
T Consensus        80 ~~h~~   84 (88)
T 1llm_C           80 RLKKL   84 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.82  E-value=1.5e-20  Score=90.56  Aligned_cols=59  Identities=29%  Similarity=0.545  Sum_probs=56.1

Q ss_pred             CCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        20 ~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      .|+||.|..|++.|.....|..|+++|+++++|.|..|++.|...+.|..|+++|+++.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            37899999999999999999999999999999999999999999999999999999874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.81  E-value=7.2e-20  Score=93.83  Aligned_cols=78  Identities=27%  Similarity=0.565  Sum_probs=74.4

Q ss_pred             CccC--CcccccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHHHhcCCCCceeccC---CCcccccHHHH
Q psy10278         23 PFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTF---CSYSCTERFRL   95 (110)
Q Consensus        23 ~~~C--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~~p~~C~~---C~~~f~~~~~l   95 (110)
                      ||.|  +.|++.|.....|..|++.|.++++|.|+.  |++.|.....|..|++.|.+   |.|..   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            6889  889999999999999999999999999988  99999999999999999987   99999   99999999999


Q ss_pred             HhhhhhcC
Q psy10278         96 KDHTLAKH  103 (110)
Q Consensus        96 ~~H~~~~~  103 (110)
                      ..|++++|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=8.3e-20  Score=92.57  Aligned_cols=72  Identities=25%  Similarity=0.536  Sum_probs=67.9

Q ss_pred             cCCCCccCCc--ccccccCchhHHHHHH-hcCCCCceeCCC--CCCCcCChHHHHHHHHhcCCCCceeccCCCcccc
Q psy10278         19 KRLKPFQCPV--CGFTTGRKATLQLHVR-QHTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCT   90 (110)
Q Consensus        19 ~~~~~~~C~~--c~~~~~~~~~l~~h~~-~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~   90 (110)
                      .++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|++.|++++||.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5678899987  9999999999999999 799999999998  9999999999999999999999999999999883

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=3.2e-19  Score=95.00  Aligned_cols=80  Identities=25%  Similarity=0.449  Sum_probs=75.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.+++||.
T Consensus        25 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           25 RHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             CBCSSHHHHHHHHH-HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             CccCCHHHHHHHHH-HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            57899999999995 79999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             c
Q psy10278         82 C   82 (110)
Q Consensus        82 C   82 (110)
                      +
T Consensus       104 ~  104 (106)
T 2ee8_A          104 A  104 (106)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.79  E-value=4e-19  Score=100.42  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=81.0

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHh-cCCCCc--------eeCCCCCCCcCChHHHHHHHHhcCCCCceeccC--CCc
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKP--------YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTF--CSY   87 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~--C~~   87 (110)
                      ..+.+|.|..|++.|.+...|..|++. |.+..+        +.|..|++.|.....|..|++.|.+++||.|..  |++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            356679999999999999999999997 776654        789999999999999999999999999999998  999


Q ss_pred             ccccHHHHHhhhhhcCCCCC
Q psy10278         88 SCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        88 ~f~~~~~l~~H~~~~~~~~~  107 (110)
                      .|.....|..|+++|+++.+
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~  120 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKP  120 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCS
T ss_pred             ccCCHHHHHHHHHhhCCCCC
Confidence            99999999999999988654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=1.5e-19  Score=92.87  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCC----CceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE----KPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        10 l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~----~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |..|+ .+|.+++||.|..|++.|.....|..|++.+...    ++|.|..|++.|.....|..|++.|.+++++.|..|
T Consensus         3 ~~~H~-~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            3 SGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTCCS-TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             ccccc-ceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            44577 4789999999999999999999999999876654    689999999999999999999999999999999999


Q ss_pred             Cccc
Q psy10278         86 SYSC   89 (110)
Q Consensus        86 ~~~f   89 (110)
                      +..+
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8865

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=5.2e-19  Score=91.56  Aligned_cols=76  Identities=36%  Similarity=0.676  Sum_probs=70.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.+...|..|++.|.++++|.|..|++.|.....|..|++.|++++
T Consensus        14 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           14 RRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CccCCHHHHHHHHH-HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            67899999999995 79999999999999999999999999999999999999999999999999999999999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=9.7e-19  Score=88.30  Aligned_cols=64  Identities=27%  Similarity=0.456  Sum_probs=35.0

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445555555555555555555555555555555555555555555555555555555555544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.7e-18  Score=89.89  Aligned_cols=77  Identities=25%  Similarity=0.659  Sum_probs=73.0

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCc
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK   79 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p   79 (110)
                      +.|.+...|..|+ ..|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+++++
T Consensus        16 ~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           16 KCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             BCCCCHHHHHHHG-GGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CccCCHHHHHHHH-HhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            6789999999999 4799999999999999999999999999999999999999999999999999999999998765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.7e-19  Score=94.29  Aligned_cols=67  Identities=24%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCCCceeCCCCCCCcC-ChHHHHHHHHhcCC-CCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         39 LQLHVRQHTREKPYACPTCEFKTG-DHNVLRKHVQRHMP-VKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        39 l~~h~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~h~~-~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +..|++.|.++++|.|..|++.|. ....|..|++.|.+ ++||.|..|++.|.....|..|++.|+++
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            334444444444555555555554 44555555554444 44555555555555555555555544443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.75  E-value=2.7e-18  Score=87.35  Aligned_cols=74  Identities=26%  Similarity=0.513  Sum_probs=69.6

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+|
T Consensus         9 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A            9 KSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHH-HHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             ccccCchhHHHHHH-HcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            67899999999995 799999999999999999999999999999999999999999999999999999998864

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.7e-18  Score=91.68  Aligned_cols=70  Identities=24%  Similarity=0.505  Sum_probs=63.5

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHH-hc---CCCCceeCCCCCCCcCChHHHHHH-HHhcCCCCceeccCCCc
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVR-QH---TREKPYACPTCEFKTGDHNVLRKH-VQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~---~~~~~~~c~~c~~~~~~~~~l~~h-~~~h~~~~p~~C~~C~~   87 (110)
                      -.|++||.|..|++.|.....|..|++ .|   .++++|.|..|++.|.....|..| ++.|++++||.|..+..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            358899999999999999999999997 58   568899999999999999999999 89999999999987543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.6e-18  Score=85.16  Aligned_cols=65  Identities=25%  Similarity=0.458  Sum_probs=56.1

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++...
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~s   71 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS   71 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSSC
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            45778888999999999999999999999888889999999999999999999999988876553

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=6.6e-18  Score=83.73  Aligned_cols=63  Identities=21%  Similarity=0.513  Sum_probs=48.0

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      +.++++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|++.++++.+.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            556677777777777777777777777777777788888888888888888888777776553

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1e-17  Score=87.90  Aligned_cols=73  Identities=15%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             cccCchhHHHHHHhcCCCCceeCCCCCCCc-CChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhh-hhhcCCC
Q psy10278         32 TTGRKATLQLHVRQHTREKPYACPTCEFKT-GDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH-TLAKHNP  105 (110)
Q Consensus        32 ~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H-~~~~~~~  105 (110)
                      .+.....+..|++.+.++++|.|..|++.| .....|..|++.| +++||.|..|++.|.....|..| +++|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            456667777888888888888999999999 8888888998888 88899999999999998899999 7777653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=9.4e-18  Score=84.02  Aligned_cols=61  Identities=26%  Similarity=0.471  Sum_probs=33.8

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      +.++++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++.
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            3344555555555555555555555555555555555555555555555555555555443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=2.8e-18  Score=86.56  Aligned_cols=67  Identities=24%  Similarity=0.492  Sum_probs=55.9

Q ss_pred             HHHHHhcCCCCceeCCCCCCCcCChHHHHHHHH-hcCCC-CceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         40 QLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPV-KKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        40 ~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~-~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ..|++.|.++++|.|..|++.|.....|..|+. .|.++ +||.|..|++.|.....|..|++.+|+..
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            346677888888999999999999889999987 67664 78999999999999999999999877654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.72  E-value=2.8e-17  Score=82.27  Aligned_cols=64  Identities=31%  Similarity=0.541  Sum_probs=61.1

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      .+.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999986

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.4e-17  Score=86.53  Aligned_cols=76  Identities=14%  Similarity=0.253  Sum_probs=67.8

Q ss_pred             chhcHHHHHHHHHHHhcCCCCccCCcccccc-cCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHH-HHhcCCCCce
Q psy10278          3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTT-GRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKH-VQRHMPVKKY   80 (110)
Q Consensus         3 ~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~-~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~h~~~~p~   80 (110)
                      .|.....|..|.+ .+.++++|.|+.|++.| .....|..|++.| ++++|.|..|++.|.....|..| +..|+++..+
T Consensus        15 ~~~~~~~~~~~~~-~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           15 VYAAGSLEEQWYL-EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             SSCTTCHHHHHHH-HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCchHHHHHHH-HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            4666777888884 68899999999999999 9999999999999 99999999999999999999999 8889865444

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=79.55  Aligned_cols=57  Identities=25%  Similarity=0.514  Sum_probs=45.9

Q ss_pred             CCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         48 REKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        48 ~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |+++|.|..|++.|.....|..|++.|.+++||.|+.|++.|.....|..|++.+|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            356788888888888888888888888888889999999999999999999888763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.71  E-value=3e-17  Score=84.17  Aligned_cols=62  Identities=13%  Similarity=0.308  Sum_probs=55.1

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhh-hcCCCC
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTL-AKHNPG  106 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~-~~~~~~  106 (110)
                      .+.+.+++.|++|++.|.....|..|++.|++++||.|..|++.|.....|..|++ .|.+++
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45667889999999999999999999999999999999999999999999999975 454443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=2.4e-18  Score=90.66  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=71.0

Q ss_pred             hhcHHHHHHHHHHHhcCCCCccCCccccccc-CchhHHHHHHhcCC-CCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278          4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTG-RKATLQLHVRQHTR-EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus         4 f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~-~~~~l~~h~~~~~~-~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      +.....+..|+ .+|.++++|.|..|++.|. ....|..|++.|.+ +++|.|..|++.|.....|..|++.|++++|..
T Consensus         6 ~~~~~~~~~h~-~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            6 SGPGGPEEQWQ-RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCSCSHHH-HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCcHHHHH-HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            44455677888 4799999999999999999 99999999999988 899999999999999999999999999999865


Q ss_pred             ccC
Q psy10278         82 CTF   84 (110)
Q Consensus        82 C~~   84 (110)
                      ...
T Consensus        85 ~~~   87 (98)
T 2gqj_A           85 AEA   87 (98)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            433

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=6.5e-17  Score=84.38  Aligned_cols=75  Identities=33%  Similarity=0.681  Sum_probs=69.6

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCC--CceeCCCCCCCcCChHHHHHHHH-hcCCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE--KPYACPTCEFKTGDHNVLRKHVQ-RHMPV   77 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~--~~~~c~~c~~~~~~~~~l~~h~~-~h~~~   77 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.....|..|++.|.+.  ++|.|..|++.|.....|..|++ .|.++
T Consensus        15 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           15 KIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CEESSSHHHHHHHH-HSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CccCChHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            57889999999995 799999999999999999999999999999887  89999999999999999999996 78764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.5e-17  Score=81.44  Aligned_cols=61  Identities=25%  Similarity=0.424  Sum_probs=48.9

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHh-c-CCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQR-H-MPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-h-~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ++|.++++|.|..|++.|.....|..|+.. | .+++||.|+.|++.|.....|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            356677788888888888888888888876 6 578888888888888888888888887775

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=9.3e-17  Score=80.91  Aligned_cols=64  Identities=25%  Similarity=0.468  Sum_probs=59.7

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      .+.++++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++.+.
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4567889999999999999999999999999999999999999999999999999999988753

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.9e-17  Score=88.29  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=71.9

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHH-hcCCCCce
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKKY   80 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~p~   80 (110)
                      +.|.+...|..|++ .|  .++|.|+.|++.|.....|..|+. |.++++|.|..|++.|.....|..|++ .|.+++||
T Consensus        24 ~~f~~~~~l~~H~~-~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           24 AKLSSLLEQGSHER-LC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             CBCSSHHHHHHHHH-HH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             CccCCHHHHHHHHH-HC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCC
Confidence            67899999999995 57  368999999999999999999996 999999999999999999999999997 99999999


Q ss_pred             ecc
Q psy10278         81 QCT   83 (110)
Q Consensus        81 ~C~   83 (110)
                      .|.
T Consensus       100 ~~~  102 (107)
T 1wjp_A          100 PTS  102 (107)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            774

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.70  E-value=5.9e-18  Score=93.03  Aligned_cols=83  Identities=18%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             CCCccCCccccccc------CchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHH
Q psy10278         21 LKPFQCPVCGFTTG------RKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFR   94 (110)
Q Consensus        21 ~~~~~C~~c~~~~~------~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~   94 (110)
                      ++++.|++|...|.      ....|..|+ .|.++++|.|..|++.|.....|..|++.|  ++||.|..|++.|.....
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHH
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHH
Confidence            34567888777665      445566665 688899999999999999999999999998  899999999999999999


Q ss_pred             HHhhhhhcCCCC
Q psy10278         95 LKDHTLAKHNPG  106 (110)
Q Consensus        95 l~~H~~~~~~~~  106 (110)
                      |..|++.+++..
T Consensus       116 l~~H~~~h~~~~  127 (129)
T 2wbt_A          116 ALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHHCCcc
Confidence            999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.8e-17  Score=85.06  Aligned_cols=70  Identities=27%  Similarity=0.441  Sum_probs=63.1

Q ss_pred             HHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCC----CceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         39 LQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV----KKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        39 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~----~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      +..|++.|.++++|.|..|++.|.....|..|+..+..+    +||.|..|++.|.....|..|+++++++.+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            456788999999999999999999999999999876654    7999999999999999999999999987653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.69  E-value=8.9e-17  Score=76.48  Aligned_cols=56  Identities=29%  Similarity=0.691  Sum_probs=47.4

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ||.|..|++.|.....|..|++.|.+++||.|+.|++.|.....|..|+++|+++.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            47788888888888888888888888888888888888888888888888887764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=83.92  Aligned_cols=74  Identities=32%  Similarity=0.654  Sum_probs=69.4

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +.|.+...|..|++ .|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.+
T Consensus        25 ~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           25 KVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            67899999999995 79999999996  6999999999999999999999999999999999999999999998864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.4e-17  Score=80.71  Aligned_cols=64  Identities=27%  Similarity=0.557  Sum_probs=60.4

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      .+.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3678999999999999999999999999999999999999999999999999999999988874

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.1e-16  Score=85.61  Aligned_cols=73  Identities=27%  Similarity=0.510  Sum_probs=69.3

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      +.|.+...|..|++ .|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.
T Consensus        17 ~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           17 KSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             CEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHH-HcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHcc
Confidence            67999999999995 79999999999999999999999999999999999999999999999999999999775

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=8.5e-17  Score=80.11  Aligned_cols=62  Identities=34%  Similarity=0.575  Sum_probs=58.9

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+++.
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            58899999999999999999999999999999999999999999999999999999998754

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=1.3e-16  Score=82.27  Aligned_cols=73  Identities=33%  Similarity=0.707  Sum_probs=68.3

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      +.|.+...|..|++ .|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.
T Consensus        15 ~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           15 KTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            67899999999994 79999999997  599999999999999999999999999999999999999999998873

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.9e-16  Score=74.98  Aligned_cols=57  Identities=23%  Similarity=0.460  Sum_probs=47.2

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhh-hhcCCCC
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT-LAKHNPG  106 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~-~~~~~~~  106 (110)
                      ++|.|..|++.|.....|..|++.|.+++||.|+.|++.|.....|..|+ ..|.++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            36888888888888888888888888888999999999999999999997 4555443

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=79.90  Aligned_cols=54  Identities=19%  Similarity=0.454  Sum_probs=26.9

Q ss_pred             CCCCceeCCCCCCCcCChHHHHHHHHhcCC---CCceeccCCCcccccHHHHHhhhh
Q psy10278         47 TREKPYACPTCEFKTGDHNVLRKHVQRHMP---VKKYQCTFCSYSCTERFRLKDHTL  100 (110)
Q Consensus        47 ~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~---~~p~~C~~C~~~f~~~~~l~~H~~  100 (110)
                      .++++|.|..|++.|.....|..|++.|.+   ++||.|..|++.|.....|..|++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            344444444444444444444445444442   445555555555555555555553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=3.5e-16  Score=80.19  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=56.0

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHH-hcCCCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVK   78 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~   78 (110)
                      +...++|.|++|++.|.....|..|++.|.++++|.|..|++.|.....|..|++ .|.+|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            4567789999999999999999999999999999999999999999999999975 687764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=7.9e-16  Score=81.41  Aligned_cols=62  Identities=26%  Similarity=0.466  Sum_probs=56.8

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHH-hc---CCCCceeccCCCcccccHHHHHhh-hhhcCCCCC
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQ-RH---MPVKKYQCTFCSYSCTERFRLKDH-TLAKHNPGT  107 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h---~~~~p~~C~~C~~~f~~~~~l~~H-~~~~~~~~~  107 (110)
                      ..|+++|.|..|++.|.....|..|++ .|   .+++||.|..|++.|...+.|..| +++|+++.+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            467899999999999999999999998 58   678999999999999999999999 789988765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.63  E-value=3.5e-16  Score=74.35  Aligned_cols=56  Identities=36%  Similarity=0.703  Sum_probs=50.4

Q ss_pred             CCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        20 ~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      |++||.|+.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46799999999999999999999999999999999999999999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.62  E-value=1.2e-15  Score=72.54  Aligned_cols=56  Identities=30%  Similarity=0.660  Sum_probs=53.5

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      ||.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999999999999999999999999999998775

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.4e-16  Score=76.55  Aligned_cols=61  Identities=20%  Similarity=0.337  Sum_probs=56.4

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHh-c-CCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQ-H-TREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~-~-~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      .+|.+++||.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            368899999999999999999999999997 7 588999999999999999999999998764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1e-15  Score=77.24  Aligned_cols=66  Identities=24%  Similarity=0.460  Sum_probs=59.4

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC---CCceeCCCCCCCcCChHHHHHHHH-hcCCCCceecc
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR---EKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKKYQCT   83 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~---~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~p~~C~   83 (110)
                      |.+++||.|..|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++ .|.+++|....
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            7899999999999999999999999999985   789999999999999999999994 77777765443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5e-16  Score=83.69  Aligned_cols=81  Identities=17%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             cchhcHHHHHHHHHHH--hcCCCCc-cCCcccccc--cCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278          2 NFYADIKCLKKHIREV--HKRLKPF-QCPVCGFTT--GRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~--~~~~~~~-~C~~c~~~~--~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +.|.+...|..|++ .  |.+++++ .|+.|+..|  .....|..|++.|.++++|.|..|++.|.....|..|++.+..
T Consensus        27 k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           27 AAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CEESSHHHHHHHHH-HTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             chhcCHHHHHHHHH-HhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            67999999999995 5  5666654 499999998  8899999999999999999999999999999999999998876


Q ss_pred             CCceecc
Q psy10278         77 VKKYQCT   83 (110)
Q Consensus        77 ~~p~~C~   83 (110)
                      .....++
T Consensus       106 ~~~~~~~  112 (115)
T 2dmi_A          106 YQKVSGP  112 (115)
T ss_dssp             TTCSCCC
T ss_pred             cccCCCC
Confidence            6554443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.60  E-value=2e-15  Score=82.89  Aligned_cols=72  Identities=21%  Similarity=0.476  Sum_probs=65.2

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~   77 (110)
                      +.|.....|..|+  .|.+++||.|+.|++.|.....|..|++.|  +++|.|..|++.|.....|..|++.|++.
T Consensus        55 ~~~~~~~~l~~h~--~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           55 QLLDESSYLYRLL--ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             GGTTTHHHHHHHH--HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHH--HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3456777888888  488899999999999999999999999998  78999999999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.8e-15  Score=75.34  Aligned_cols=59  Identities=25%  Similarity=0.589  Sum_probs=46.1

Q ss_pred             hcCCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         45 QHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        45 ~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      .+.++++|.|+  .|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            45667778886  488888888888888888888888888888888888888888887663

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.9e-15  Score=76.30  Aligned_cols=60  Identities=25%  Similarity=0.524  Sum_probs=56.6

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCCCCCCCc
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKT   61 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~   61 (110)
                      +.|.+...|..|++..|.++++|.|+.  |++.|.....|..|++.|.++++|.|..|++.|
T Consensus        17 ~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           17 RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            679999999999964799999999999  999999999999999999999999999999987

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=3.8e-16  Score=78.65  Aligned_cols=68  Identities=21%  Similarity=0.482  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCCCCccCCcccccccCchhHHHHHH-hcCCC-CceeCCCCCCCcCChHHHHHHHHhc-CCCCc
Q psy10278         11 KKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVR-QHTRE-KPYACPTCEFKTGDHNVLRKHVQRH-MPVKK   79 (110)
Q Consensus        11 ~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~h-~~~~p   79 (110)
                      ..|+ .+|.+++||.|+.|++.|.....|..|+. .|.+. ++|.|..|++.|.....|..|++.+ ..+.|
T Consensus         4 ~~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            4 GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCC-CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             Cccc-cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3466 47999999999999999999999999997 67764 8999999999999999999999964 44544

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=4.1e-16  Score=77.71  Aligned_cols=68  Identities=26%  Similarity=0.609  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhcCCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278          8 KCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         8 ~~l~~h~~~~~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      ..|..|+..++.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            34555666678899999997  599999999999999999999999999999999999999999998774

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.58  E-value=5.6e-15  Score=75.35  Aligned_cols=70  Identities=26%  Similarity=0.490  Sum_probs=65.1

Q ss_pred             cchhcHHHHHHHHHHHhcCCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCCC---CCCCcCChHHHHHHHHhcC
Q psy10278          2 NFYADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPT---CEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         2 ~~f~~~~~l~~h~~~~~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~---c~~~~~~~~~l~~h~~~h~   75 (110)
                      +.|.+...|..|++ +|.++++|.|+.  |++.|.....|..|++.|.+   +.|..   |++.|.....|..|++.|+
T Consensus        11 ~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           11 KAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             cccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            67899999999994 799999999988  99999999999999999987   99999   9999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=77.34  Aligned_cols=60  Identities=20%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             ccCCcccccccCchhHHHHHHh-cCCCCc--------eeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQ-HTREKP--------YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|+.|++.|.....|..|++. |.+.++        |.|..|++.|.....|..|+++|++++||.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5677788888887788888776 777665        67777777777777777777777777777774

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=8.2e-15  Score=70.26  Aligned_cols=56  Identities=34%  Similarity=0.644  Sum_probs=52.2

Q ss_pred             CCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHH-HhcCCC
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHV-QRHMPV   77 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~-~~h~~~   77 (110)
                      +||.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            47999999999999999999999999999999999999999999999997 577764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=5.4e-15  Score=76.17  Aligned_cols=56  Identities=23%  Similarity=0.462  Sum_probs=53.3

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|++.+++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            46899999999999999999999999999999999999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4.7e-15  Score=72.53  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=43.5

Q ss_pred             CCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc-CCCcccccHHHHHhhhhhcCCCC
Q psy10278         48 REKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT-FCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        48 ~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~-~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      +.++|.|..|++.|. ...|..|++. ++++||.|. .|++.|...+.|..|+++|....
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            456777888888887 7778888777 777888888 78888888888888887766543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=6.8e-19  Score=87.78  Aligned_cols=70  Identities=20%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278          8 KCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus         8 ~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ..|..|+ .+|.+++||.|+.|++.|.....|..       +++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~l~~H~-~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQ-KIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCC-CCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHH-HHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4466677 46888888899999988888777654       5678888888888888888888888888888888776

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=69.98  Aligned_cols=59  Identities=24%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC-CCCCCcCChHHHHHHHHhcCCCCc
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP-TCEFKTGDHNVLRKHVQRHMPVKK   79 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~h~~~~p   79 (110)
                      -+++||.|..|++.|. ...|..|++. .++++|.|. .|++.|.....|..|++.|...+|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678999999999999 9999999999 999999999 999999999999999999887665

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.48  E-value=9.9e-14  Score=68.77  Aligned_cols=57  Identities=19%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             cCCCCceeCCC--CCCCcCChHHHHHHHHhcCCCCceeccC--CCcccccHHHHHhhhhhc
Q psy10278         46 HTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTF--CSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        46 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~h~~~~p~~C~~--C~~~f~~~~~l~~H~~~~  102 (110)
                      ....++|.|..  |++.|.....|..|++.|.+++||.|..  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567889987  9999999999999999999999999965  999999999999998764

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=7.1e-14  Score=65.69  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=36.5

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHH-hcCCCCceeccCCCccccc
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKKYQCTFCSYSCTE   91 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~p~~C~~C~~~f~~   91 (110)
                      +.++++|.|..|++.|.....|..|++ .|.+++||.|..|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            556777888888888888888888876 7888888888888888765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.7e-14  Score=64.46  Aligned_cols=44  Identities=25%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            34456666666666666666666666667666666666666655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.7e-14  Score=64.45  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=28.4

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            34455666666666666666666666666666666666666655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.9e-14  Score=64.04  Aligned_cols=44  Identities=27%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666666676677667666667777666666677766655

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.9e-14  Score=64.39  Aligned_cols=44  Identities=25%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44556667777777777777777777777777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4e-14  Score=64.30  Aligned_cols=43  Identities=26%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            3455555666666666666666666666666666666666554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.5e-14  Score=63.93  Aligned_cols=42  Identities=26%  Similarity=0.353  Sum_probs=25.6

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345555666666666666666666666666666666666554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=5.1e-14  Score=63.98  Aligned_cols=44  Identities=27%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666667777777777777777777777777777776655

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=3.9e-14  Score=64.34  Aligned_cols=44  Identities=20%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5e-14  Score=64.00  Aligned_cols=43  Identities=23%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|+..|++++||.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3455556666666666666666666666666666666666554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.8e-14  Score=63.76  Aligned_cols=44  Identities=25%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.43  E-value=4.6e-14  Score=64.16  Aligned_cols=43  Identities=26%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445555666666666666666666666666666666666554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.43  E-value=4.4e-14  Score=64.22  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445555555555555555555555555555555555555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.1e-14  Score=63.97  Aligned_cols=44  Identities=25%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666777777777777777777777777777777777665

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.8e-14  Score=63.81  Aligned_cols=44  Identities=23%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.43  E-value=4.4e-14  Score=64.21  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34455666666666666666666666666666666666666655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=6.8e-14  Score=63.54  Aligned_cols=44  Identities=27%  Similarity=0.258  Sum_probs=27.4

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|+..|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455666666666666666666666666666666666666554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.5e-14  Score=63.87  Aligned_cols=44  Identities=23%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.8e-14  Score=64.06  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455666666666666666666666666666666666666655

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.7e-14  Score=63.79  Aligned_cols=43  Identities=26%  Similarity=0.275  Sum_probs=24.6

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445555555555555555555555566555555556655554

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.8e-14  Score=63.76  Aligned_cols=44  Identities=20%  Similarity=0.134  Sum_probs=28.4

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.5e-14  Score=64.20  Aligned_cols=44  Identities=16%  Similarity=0.086  Sum_probs=30.2

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666677777777777777777777777777777777665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.43  E-value=4.2e-14  Score=64.25  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=5.3e-14  Score=63.90  Aligned_cols=43  Identities=26%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3455556666666666666666666666666666666666554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5.6e-14  Score=63.80  Aligned_cols=44  Identities=23%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566677777777777777777777777777777777777665

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.4e-14  Score=64.23  Aligned_cols=44  Identities=18%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.8e-14  Score=64.09  Aligned_cols=43  Identities=26%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3456666666666666666666666666666666666666655

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=6.3e-14  Score=63.62  Aligned_cols=43  Identities=23%  Similarity=0.187  Sum_probs=26.7

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3455566666666666666666666666666666666666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.42  E-value=5.4e-14  Score=63.86  Aligned_cols=44  Identities=27%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666667777777777777777777667777777776665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5.3e-14  Score=63.91  Aligned_cols=44  Identities=25%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666667777777777777777777777777777776665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8.1e-14  Score=63.30  Aligned_cols=43  Identities=19%  Similarity=0.184  Sum_probs=28.6

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.5e-14  Score=64.13  Aligned_cols=43  Identities=28%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445555555555555555555556566555555566655554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.42  E-value=5.8e-14  Score=63.79  Aligned_cols=44  Identities=23%  Similarity=0.219  Sum_probs=28.3

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.5e-14  Score=64.15  Aligned_cols=44  Identities=23%  Similarity=0.175  Sum_probs=27.7

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455666666666666666666666666666666666666655

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.6e-14  Score=63.39  Aligned_cols=43  Identities=23%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4456666666666666666666666666666666666666655

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=5.8e-14  Score=63.79  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            3455556666666666666666666666666666666666554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=4.5e-14  Score=64.17  Aligned_cols=44  Identities=27%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.41  E-value=8.5e-14  Score=63.24  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3456666666777777777766677777666766677766655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=4.8e-14  Score=64.08  Aligned_cols=44  Identities=27%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34455666666666666666666666666666666666666655

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=6.3e-14  Score=63.66  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|+..|.+++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455556666666666666666666666666666666666554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=4.9e-14  Score=64.04  Aligned_cols=44  Identities=23%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666655

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.6e-13  Score=69.02  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHh-cCCCCc--------eeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQR-HMPVKK--------YQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~-h~~~~p--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      .+.|..|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|+++.+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            46799999999999999999997 998888        99999999999999999999999987653

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.40  E-value=3e-15  Score=72.47  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=41.7

Q ss_pred             HHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHH
Q psy10278         41 LHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK   96 (110)
Q Consensus        41 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~   96 (110)
                      .|++.|.++++|.|+.|++.|.....|.   ..|.+++||.|..|++.|....++.
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            3556788888888888888888777765   6788888999999999888765443

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1e-13  Score=62.95  Aligned_cols=44  Identities=27%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666543

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=4.6e-14  Score=64.11  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3455566666666666666666666666666666666666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=4.6e-14  Score=64.13  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            33455566666666666666666666666666666666666655

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=6.5e-14  Score=63.66  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555555555555555555555555555555555555544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.3e-13  Score=62.77  Aligned_cols=44  Identities=23%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHH-hcCCCCceeccCC
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKKYQCTFC   85 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~p~~C~~C   85 (110)
                      |++.|.++++|.|..|++.|.....|..|++ .|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3445666666666666666666666666666 6666666666655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=9e-14  Score=63.15  Aligned_cols=43  Identities=23%  Similarity=0.180  Sum_probs=28.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3455666666666666666666666666666666666666655

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7.8e-14  Score=63.35  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            3445555566666666666666666666666666666666554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.5e-13  Score=61.66  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccC
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTF   84 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~   84 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            445566666666666666666666666666666666666654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=7.4e-13  Score=62.14  Aligned_cols=47  Identities=28%  Similarity=0.474  Sum_probs=43.5

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHH-hcCCCCceeCCCCCCCcCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYACPTCEFKTGD   63 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~~~~   63 (110)
                      .+.+++||.|+.|++.|.....|..|++ .|.++++|.|..|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3678899999999999999999999997 8999999999999999865

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.35  E-value=3.3e-13  Score=61.23  Aligned_cols=44  Identities=32%  Similarity=0.504  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SG-SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CC-CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44 368999999999999999999999999999999999999877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3e-13  Score=61.34  Aligned_cols=44  Identities=27%  Similarity=0.361  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SG-SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             Cc-ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999877

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.35  E-value=1.4e-12  Score=64.55  Aligned_cols=57  Identities=33%  Similarity=0.668  Sum_probs=51.8

Q ss_pred             hcCCCCccCCc--ccccccCchhHHHHHHhcCCCCceeCCC--CCCCcCChHHHHHHHHhc
Q psy10278         18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        18 ~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~h   74 (110)
                      ...+++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|++.|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            45678899998  9999999999999999999999999965  999999999999998764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.34  E-value=4e-13  Score=59.74  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            44555555555555555555555555555555555554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.34  E-value=3.1e-13  Score=61.34  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SG-SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CC-CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.8e-13  Score=60.96  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SG-SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CC-CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CC-CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45 368899999999999999999999999999999999999877

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.7e-13  Score=61.06  Aligned_cols=44  Identities=30%  Similarity=0.450  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SG-SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CC-CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CC-CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368899999999999999999999999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.5e-13  Score=61.06  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=39.1

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68899999999999999999999999999999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=7.9e-13  Score=60.54  Aligned_cols=42  Identities=26%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      +.++++|.|..|++.|.....|..|++.|++++||.|..|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            445566777777777777777777777777777777777764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=9.2e-16  Score=76.23  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             hhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         37 ATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        37 ~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      ..|..|++.|.++++|.|..|++.|.....|..       ++||.|..|++.|.....|..|+++|+++.+
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            446678888999999999999999988877765       7899999999999999999999999988765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.6e-13  Score=61.54  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SG-SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CC-CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cc-CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999877

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.6e-13  Score=61.55  Aligned_cols=44  Identities=27%  Similarity=0.386  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SG-SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CC-cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999887

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.8e-13  Score=60.68  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34555666666666666666666666666666666666664

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4e-13  Score=60.92  Aligned_cols=44  Identities=25%  Similarity=0.393  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SG-SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SS-CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cc-cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55 368999999999999999999999999999999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.5e-13  Score=61.14  Aligned_cols=44  Identities=30%  Similarity=0.534  Sum_probs=40.7

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SG-SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SS-SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CC-CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 368999999999999999999999999999999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.6e-13  Score=61.06  Aligned_cols=44  Identities=30%  Similarity=0.441  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SG-SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SS-CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CC-cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4e-13  Score=60.89  Aligned_cols=44  Identities=34%  Similarity=0.443  Sum_probs=40.8

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SG-SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CC-CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55 368999999999999999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.7e-13  Score=61.46  Aligned_cols=44  Identities=30%  Similarity=0.366  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SG-SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             Cc-CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.9e-13  Score=61.38  Aligned_cols=44  Identities=27%  Similarity=0.380  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CS-SCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CC-CCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.5e-13  Score=61.12  Aligned_cols=44  Identities=32%  Similarity=0.405  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SG-SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CC-CCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999876

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.1e-13  Score=59.11  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34455555555555555555555555555555555544

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.9e-13  Score=61.41  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SG-SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CC-CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.33  E-value=3.2e-13  Score=61.24  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SG-SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             Cc-CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45 368899999999999999999999999999999999999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.1e-13  Score=60.91  Aligned_cols=42  Identities=31%  Similarity=0.539  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             cCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            368999999999999999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.1e-13  Score=60.88  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SG-SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CC-CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             Cc-ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368899999999999999999999999999999999999876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=9.5e-13  Score=59.40  Aligned_cols=40  Identities=25%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      |.++++|.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            3444444454455555455555555555555555555444

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.6e-13  Score=61.04  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SG-SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CC-CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             Cc-cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.2e-13  Score=61.25  Aligned_cols=44  Identities=30%  Similarity=0.415  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SG-SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             Cc-ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999886

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.1e-13  Score=60.59  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555666666666666666666666666666666666654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.32  E-value=3.3e-13  Score=63.33  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=25.2

Q ss_pred             cCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         61 TGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        61 ~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      |.....|..|++.|.+++||.|..|++.|...+.|..|+++|+++.
T Consensus         6 ~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            6 AKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTS
T ss_pred             cCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            4444444455555555555555555555555555555555555544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.8e-13  Score=61.00  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SG-SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CC-CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             Cc-cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3e-13  Score=61.35  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SG-SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cc-cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.7e-13  Score=61.51  Aligned_cols=44  Identities=34%  Similarity=0.467  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SG-SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cc-cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=1.1e-12  Score=59.12  Aligned_cols=42  Identities=33%  Similarity=0.635  Sum_probs=40.0

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE   58 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~   58 (110)
                      .|.+++||.|..|++.|.....|..|++.|.++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            588999999999999999999999999999999999999986

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=2.8e-13  Score=61.45  Aligned_cols=44  Identities=30%  Similarity=0.425  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SG-SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CC-CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cc-cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.9e-13  Score=61.00  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             SCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=3.3e-13  Score=61.23  Aligned_cols=44  Identities=27%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SG-SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SC-SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             Cc-cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=61.35  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SG-SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cc-cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.9e-13  Score=59.75  Aligned_cols=42  Identities=26%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345666677777777777777777777777777777777665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-13  Score=61.13  Aligned_cols=44  Identities=30%  Similarity=0.399  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SG-SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CC-cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999876

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.1e-13  Score=60.33  Aligned_cols=41  Identities=22%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34555566666666666666666666666666666666554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.7e-13  Score=60.17  Aligned_cols=41  Identities=27%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.6e-13  Score=60.44  Aligned_cols=42  Identities=29%  Similarity=0.415  Sum_probs=39.6

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.9e-13  Score=60.62  Aligned_cols=42  Identities=24%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.31  E-value=6.4e-13  Score=60.25  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555666666666666666666666666666666554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.3e-13  Score=61.23  Aligned_cols=44  Identities=32%  Similarity=0.353  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|++|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SG-SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             Cc-CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 368999999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.6e-13  Score=61.07  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=61.47  Aligned_cols=44  Identities=27%  Similarity=0.461  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SG-SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CC-CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CC-CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            55 368999999999999999999999999999999999999876

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.6e-13  Score=59.96  Aligned_cols=41  Identities=27%  Similarity=0.308  Sum_probs=24.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            34455556666666666666666666666666666666554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=61.38  Aligned_cols=44  Identities=27%  Similarity=0.430  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SG-SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CC-CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.4e-13  Score=60.84  Aligned_cols=42  Identities=26%  Similarity=0.485  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999877

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.1e-13  Score=59.89  Aligned_cols=41  Identities=20%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555666666666666666666666666666666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.31  E-value=4.3e-13  Score=60.81  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SG-SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SC-CSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CC-CCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999877

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.4e-13  Score=59.28  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ++.|.++++|.|..|++.|.....|..|+..|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            3445555555555555555555555555555555555554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.3e-13  Score=60.81  Aligned_cols=44  Identities=32%  Similarity=0.460  Sum_probs=40.8

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SG-SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             ST-TCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cc-cCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55 378999999999999999999999999999999999999876

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.3e-13  Score=59.84  Aligned_cols=41  Identities=27%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.3e-13  Score=59.87  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34455555666666666666666666666666666666554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.8e-13  Score=58.99  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ++.|.++++|.|..|++.|.....|..|+..|.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            3445555666666666666666666666666666666655

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.1e-13  Score=59.68  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=25.1

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455566666666666666666666666666666666554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=59.81  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455555566666666666666666666566666666554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.30  E-value=7e-13  Score=62.21  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             ccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278         31 FTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus        31 ~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      +.|.....|..|++.|.++++|.|..|++.|.....|..|+..|++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34455555555666666666666666666666666666666666666654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.6e-13  Score=60.76  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555566666666666666666666666666666666554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.2e-13  Score=60.82  Aligned_cols=44  Identities=23%  Similarity=0.230  Sum_probs=40.4

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SG-SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CC-CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cc-ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45 368899999999999999999999999999999999999876

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.9e-13  Score=59.59  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=24.2

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            34455555666666666666666666666666666666553

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.4e-13  Score=59.22  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            3445555555555555555555555556555555555555

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.2e-13  Score=61.28  Aligned_cols=44  Identities=27%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CC-CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cC-cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44 368999999999999999999999999999999999999877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-13  Score=60.74  Aligned_cols=44  Identities=34%  Similarity=0.480  Sum_probs=40.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 h~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SG-SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CS-CCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CC-CccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44 368999999999999999999999999999999999999877

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.6e-13  Score=59.80  Aligned_cols=40  Identities=25%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3444555555555555555555555555555555555543

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=59.42  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455555555555555555555555555555555555553

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.6e-13  Score=61.07  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=40.4

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SG-SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CC-CCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CC-cCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999877

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8e-13  Score=59.91  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            3445555555555555555555555555555555555553

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=59.40  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445555555555555555555555555555555555553

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.6e-13  Score=59.95  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=25.4

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555566666666666666666666666666666666654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9e-13  Score=59.71  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            34455555566666666666666666666666666666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.2e-13  Score=61.24  Aligned_cols=44  Identities=32%  Similarity=0.477  Sum_probs=40.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SG-SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CC-CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368899999999999999999999999999999999999887

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8e-13  Score=59.96  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=23.2

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            4455555555655666666666666665555555565554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.28  E-value=2.6e-12  Score=58.19  Aligned_cols=42  Identities=31%  Similarity=0.532  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999999999999877

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7e-13  Score=60.10  Aligned_cols=44  Identities=27%  Similarity=0.422  Sum_probs=40.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SG-SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CC-CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45 368999999999999999999999999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1e-12  Score=59.59  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            334555566666666666666666666666666666666554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=59.34  Aligned_cols=41  Identities=29%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555666666666666666666666666666666553

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.2e-13  Score=59.91  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=40.3

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHH-hcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++ .|.++++|.|..|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SG-SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CC-CCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cc-cccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            44 36889999999999999999999999999 9999999999876

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.28  E-value=1.5e-12  Score=57.82  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34444455555555555555555555555555555443

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=58.76  Aligned_cols=40  Identities=18%  Similarity=0.259  Sum_probs=23.9

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            3445555566666666666666666666666666666555

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=59.11  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455556666666666666666666666666666666553

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=2.4e-12  Score=58.86  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=40.1

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEF   59 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   59 (110)
                      .+.++++|.|..|++.|.....|..|++.|.++++|.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3678899999999999999999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.6e-13  Score=59.83  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3444555555555555555555555555555555555543

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.8e-13  Score=59.35  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            344444445555555555555555555555555555444

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=58.97  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455555666666666666666666666666666666553

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8e-13  Score=58.72  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=12.0

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |.+++||.|..|++.|...+.|..|+++|+
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence            333344444444444444444444443333

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.3e-12  Score=59.19  Aligned_cols=44  Identities=32%  Similarity=0.461  Sum_probs=39.9

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SG-SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CC-CCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.1e-12  Score=57.98  Aligned_cols=39  Identities=13%  Similarity=0.149  Sum_probs=23.4

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      +.|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            345555566666666666666666666666666666655

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.9e-12  Score=58.03  Aligned_cols=42  Identities=31%  Similarity=0.463  Sum_probs=39.5

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            368899999999999999999999999999999999999887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.1e-12  Score=58.31  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=15.2

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      |.++++|.|..|++.|.....|..|++.|.+++||.
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            333444444444444444444444444444444443

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=58.41  Aligned_cols=38  Identities=32%  Similarity=0.409  Sum_probs=17.8

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            34444444444444444444444444444444444443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.1e-12  Score=57.50  Aligned_cols=41  Identities=32%  Similarity=0.494  Sum_probs=39.0

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999999999999999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=58.51  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC-CCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP-VKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~-~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+ ++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3445555555665566666555566666555555 5555553

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.6e-12  Score=58.19  Aligned_cols=41  Identities=34%  Similarity=0.498  Sum_probs=39.0

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            58899999999999999999999999999999999999877

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=59.17  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=58.75  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      +.|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            344445555555555555555555555555555555554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.8e-12  Score=57.12  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=16.2

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      .|.++++|.|..|++.|.....|..|++.|++++||.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            3344444444444444444444444444444444443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-12  Score=56.50  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688999999999999999999999999999999999874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.2e-12  Score=57.91  Aligned_cols=42  Identities=29%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             HhcCCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCceeccCC
Q psy10278         44 RQHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC   85 (110)
Q Consensus        44 ~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C   85 (110)
                      +.|.++++|.|.  .|++.|.....|..|++.|.+++||.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            346666777776  677777777777777777777777777665

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.2e-12  Score=59.27  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             HHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         43 VRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        43 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ++.|.++++|.|..|++.|.....|..|++.|.+++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            3445555555555555555555555555555555555555

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.22  E-value=2.9e-12  Score=56.89  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=36.8

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            688999999999999999999999999999999999884

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.9e-12  Score=58.01  Aligned_cols=43  Identities=30%  Similarity=0.475  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|..|++.|.....|..|++.|.++++|.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SG-SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SC-CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             Cc-cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.5e-12  Score=57.74  Aligned_cols=43  Identities=33%  Similarity=0.467  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SG-SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.21  E-value=2.9e-12  Score=58.05  Aligned_cols=43  Identities=33%  Similarity=0.475  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SG-SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CC-CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.4e-12  Score=57.78  Aligned_cols=43  Identities=28%  Similarity=0.395  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CC-cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            44 36889999999999999999999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.3e-12  Score=58.67  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=17.4

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      .|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34444444444444444444444444444444444443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.5e-12  Score=57.71  Aligned_cols=43  Identities=33%  Similarity=0.487  Sum_probs=39.3

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SG-SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CC-CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999964

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.4e-12  Score=57.34  Aligned_cols=43  Identities=30%  Similarity=0.495  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SG-SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CC-CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cc-cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.9e-12  Score=57.56  Aligned_cols=43  Identities=28%  Similarity=0.453  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SG-SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CC-CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CC-CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44 36889999999999999999999999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.8e-12  Score=57.27  Aligned_cols=41  Identities=32%  Similarity=0.451  Sum_probs=38.2

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36899999999999999999999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.5e-12  Score=57.74  Aligned_cols=43  Identities=28%  Similarity=0.405  Sum_probs=38.9

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CC-cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            44 36889999999999999999999999999999999999864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=54.88  Aligned_cols=37  Identities=14%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      |.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            4444555555555555555555555555555555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.7e-12  Score=57.63  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SG-SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CC-CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             cc-CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3e-12  Score=57.97  Aligned_cols=43  Identities=33%  Similarity=0.501  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SG-SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cc-cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999964

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.5e-12  Score=57.10  Aligned_cols=43  Identities=26%  Similarity=0.323  Sum_probs=38.8

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SG-SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CC-CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CC-CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44 36889999999999999999999999999999999999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1e-11  Score=56.17  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=23.2

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      .|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666666666666666666666666553

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.6e-12  Score=57.36  Aligned_cols=43  Identities=33%  Similarity=0.439  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SG-SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CC-SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             Cc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44 36899999999999999999999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.4e-12  Score=57.39  Aligned_cols=43  Identities=28%  Similarity=0.433  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.++++|.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SG-SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CC-CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CC-cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.1e-12  Score=57.47  Aligned_cols=43  Identities=33%  Similarity=0.481  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SG-SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CC-CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44 36889999999999999999999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=54.49  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=16.4

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      |.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3344444444444444444444444444444444433

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5e-12  Score=57.22  Aligned_cols=43  Identities=35%  Similarity=0.493  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SG-SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CC-SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cc-cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.7e-12  Score=57.60  Aligned_cols=43  Identities=33%  Similarity=0.434  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SG-SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CS-CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CC-CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            45 36889999999999999999999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.9e-12  Score=57.23  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SG-SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cc-cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.18  E-value=2.5e-13  Score=65.61  Aligned_cols=52  Identities=17%  Similarity=0.332  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHH
Q psy10278         11 KKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNV   66 (110)
Q Consensus        11 ~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~   66 (110)
                      ..|+ .+|.+++||.|+.|++.|.....|.   +.|.++++|.|..|++.|....+
T Consensus         3 ~~h~-~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDE-RDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCS-SSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhHH-HHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            3456 4689999999999999999887775   78999999999999999976654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=6.5e-12  Score=56.29  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SG-SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CS-CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             Cc-cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            45 3689999999999999999999999999999999998874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.3e-12  Score=56.52  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SG-SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SC-CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CC-cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            45 3688999999999999999999999999999999999884

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.6e-12  Score=56.45  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SG-SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CS-SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             Cc-cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            45 3689999999999999999999999999999999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4e-12  Score=57.54  Aligned_cols=43  Identities=30%  Similarity=0.407  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SG-SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SC-CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             cc-ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.8e-12  Score=57.59  Aligned_cols=43  Identities=33%  Similarity=0.439  Sum_probs=39.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|..|++.|.....|..|++.|.++++|.|++
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SG-SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SS-SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CC-cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999964

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.3e-11  Score=54.24  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      .|.+++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5789999999999999999999999999999999999863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.5e-12  Score=57.39  Aligned_cols=41  Identities=27%  Similarity=0.475  Sum_probs=38.1

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            36889999999999999999999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5e-12  Score=57.18  Aligned_cols=43  Identities=35%  Similarity=0.505  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SG-SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             Cc-cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=8.6e-13  Score=66.06  Aligned_cols=64  Identities=16%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         39 LQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        39 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |..|+..+.+.+++.|..|+..|. ...|..|. .+.+++|+.|+.|++.|. ...|..|+.++.+.
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            445666677788888888888884 77888888 788888888888888776 47888888877654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.4e-12  Score=56.83  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SG-SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SC-CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             Cc-cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45 3689999999999999999999999999999999999884

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=55.55  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             hcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        45 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      .|.++++|.|..|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555553

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.4e-11  Score=54.50  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=38.3

Q ss_pred             HHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        42 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55678999999999999999999999999999999999987

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.8e-11  Score=54.83  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=35.5

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      |++.|.+++||.|..|++.|...+.|..|+++|+++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            567889999999999999999999999999999987764

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.2e-12  Score=57.18  Aligned_cols=42  Identities=29%  Similarity=0.466  Sum_probs=38.5

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SG-SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CC-CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cc-cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            45 3688999999999999999999999999999999999886

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.16  E-value=1.4e-11  Score=53.08  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |++.|.+++||.|+.|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            456788888888988999998888888888887753

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.15  E-value=8.1e-12  Score=55.35  Aligned_cols=39  Identities=21%  Similarity=0.450  Sum_probs=36.4

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC   54 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c   54 (110)
                      .+|.+++||.|+.|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            368899999999999999999999999999999999876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.2e-11  Score=55.42  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=37.0

Q ss_pred             HHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        16 ~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      .+|.+++||.|..|++.|.....|..|++.|.++++|.|.
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3688999999999999999999999999999999999884

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.5e-11  Score=54.39  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=37.4

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      +|.+++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            5889999999999999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=8.3e-12  Score=56.48  Aligned_cols=43  Identities=28%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCC-CCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR-EKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~-~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.+ +++|.|..
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SG-SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CC-CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             Cc-cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44 368899999999999999999999999999999 99999863

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.8e-11  Score=55.09  Aligned_cols=40  Identities=35%  Similarity=0.499  Sum_probs=37.4

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      +|.+++||.|..|++.|.....|..|++.|.++++|.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5889999999999999999999999999999999999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.3e-12  Score=56.42  Aligned_cols=43  Identities=26%  Similarity=0.424  Sum_probs=39.0

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SG-SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CC-CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cc-cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36889999999999999999999999999999999999863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.7e-11  Score=54.28  Aligned_cols=40  Identities=33%  Similarity=0.544  Sum_probs=37.5

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      +|.+++||.|..|++.|.....|..|++.|.++++|.|..
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6889999999999999999999999999999999999863

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2e-11  Score=54.09  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      |++.|.+++||.|..|++.|...+.|..|+++|+++.+.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            456789999999999999999999999999999887653

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.2e-12  Score=56.68  Aligned_cols=43  Identities=33%  Similarity=0.546  Sum_probs=38.9

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT   56 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   56 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SG-SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CC-SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CC-cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45 36899999999999999999999999999999999999863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.13  E-value=7e-11  Score=50.09  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.4

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      |.+++||.|..|++.|...+.|..|+++|+++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            567888888888888888888888888887764

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.4e-11  Score=53.58  Aligned_cols=38  Identities=29%  Similarity=0.503  Sum_probs=35.8

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC   54 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c   54 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            58899999999999999999999999999999999876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.6e-11  Score=52.19  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      .|.+++||.|..|++.|.....|..|+++|+++.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            5778888888888888888888888888887764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.5e-11  Score=54.51  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      |++.|.+++||.|..|++.|.....|..|+++|+++.+.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            456789999999999999999999999999999887653

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.7e-11  Score=53.72  Aligned_cols=39  Identities=18%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      |++.|.+++||.|..|++.|.....|..|+++|+++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            567889999999999999999999999999999887653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.11  E-value=1.1e-10  Score=49.56  Aligned_cols=33  Identities=12%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      |.+++||.|..|++.|...+.|..|+++|+++.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            667888888888888888888888888887654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.9e-11  Score=54.26  Aligned_cols=41  Identities=32%  Similarity=0.534  Sum_probs=38.6

Q ss_pred             HhcCCCCccCC--cccccccCchhHHHHHHhcCCCCceeCCCC
Q psy10278         17 VHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTC   57 (110)
Q Consensus        17 ~~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   57 (110)
                      +|.+++||.|.  .|++.|.....|..|++.|.++++|.|..|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            58899999998  899999999999999999999999999876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=7.5e-12  Score=56.60  Aligned_cols=42  Identities=31%  Similarity=0.511  Sum_probs=38.4

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SG-SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CC-CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cc-cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45 3688999999999999999999999999999999999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=7.8e-12  Score=56.02  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=38.1

Q ss_pred             HHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        13 h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |+ .+|.+++||.|+.|++.|.....|..|++.|.++++|.|.
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SG-SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CC-CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CC-cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45 3689999999999999999999999999999999999874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.10  E-value=1.3e-10  Score=50.56  Aligned_cols=32  Identities=22%  Similarity=0.498  Sum_probs=15.6

Q ss_pred             CCCceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         76 PVKKYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        76 ~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      +++||.|..|++.|...+.|..|+++|+++.+
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            44445555555555555555555544444433

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=50.45  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             hcCCCCceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .+.+++||.|..  |++.|...+.|..|+++|++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            356789999986  999999999999999988765

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.04  E-value=2.8e-10  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=20.4

Q ss_pred             CCCCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278         47 TREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus        47 ~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      .++++|.|..|++.|.....|..|++.|++++||.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            34555666666666666666666666666555554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=4e-12  Score=65.46  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=36.3

Q ss_pred             HhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        44 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ..|.++++|.|..|++.|.....|..|++.|++++||.|..|.+    ...|..|.+.+.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            34666777777777777777777777777777777777765543    2334445555444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.4e-10  Score=49.88  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             HhcCCCCceeccCCCcccccHHHHHhh-hhhcCCC
Q psy10278         72 QRHMPVKKYQCTFCSYSCTERFRLKDH-TLAKHNP  105 (110)
Q Consensus        72 ~~h~~~~p~~C~~C~~~f~~~~~l~~H-~~~~~~~  105 (110)
                      +.|.+++||.|..|++.|...+.|..| +..|++.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357888999999999999999999999 7777653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.6e-10  Score=47.84  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=27.6

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            467788899988999998888888888888764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.4e-10  Score=47.89  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .|.+++||.|..|++.|...+.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            467788999999999999999999999888764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4e-10  Score=47.96  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=27.3

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            467788888888888888888888888887764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.00  E-value=3.1e-10  Score=51.73  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=24.1

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhh-hcCCCC
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTL-AKHNPG  106 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~-~~~~~~  106 (110)
                      |++++||.|..|++.|.....|..|++ +|.++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            667788888888888888888888887 666543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.00  E-value=4.3e-10  Score=47.14  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCCCCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG  109 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  109 (110)
                      +||.|..|++.|...+.|..|+++|+++.+..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            35666666666666666666666666655543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.7e-10  Score=48.88  Aligned_cols=33  Identities=15%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             hcCCCCceeccCCCcccccH-HHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTER-FRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~-~~l~~H~~~~~~~  105 (110)
                      +|.+++||.|..|++.|... +.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            57788888898899888888 8888888887764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6e-10  Score=47.39  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            356778888888888888888888888887765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=8.3e-10  Score=53.78  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=25.5

Q ss_pred             cCCCCceeCCC--CCCCcCChHHHHHHH-HhcCCCCceeccC
Q psy10278         46 HTREKPYACPT--CEFKTGDHNVLRKHV-QRHMPVKKYQCTF   84 (110)
Q Consensus        46 ~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~h~~~~p~~C~~   84 (110)
                      ..+++||.|..  |++.|...+.|..|+ ++|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            35666777743  777777777777775 4677777766643

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=1.7e-09  Score=52.64  Aligned_cols=39  Identities=21%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             hcCCCCccCCc--ccccccCchhHHHHH-HhcCCCCceeCCC
Q psy10278         18 HKRLKPFQCPV--CGFTTGRKATLQLHV-RQHTREKPYACPT   56 (110)
Q Consensus        18 ~~~~~~~~C~~--c~~~~~~~~~l~~h~-~~~~~~~~~~c~~   56 (110)
                      +.+++||.|..  |++.|.....|..|+ ++|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46777888854  888888888888886 4788888777754

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.7e-10  Score=48.43  Aligned_cols=33  Identities=18%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK   50 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~   50 (110)
                      |.+++||.|..|++.|.....|..|++.|.+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            455555555555555555555555555555443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.7e-11  Score=61.26  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278          9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus         9 ~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      .|..|+ ..+-+++|+.|+.|+..|. ...|..|+ .+.+++++.|+.|++.|.. ..|..|+..+.+++
T Consensus         4 ~L~~H~-~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHE-ETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCC-CCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             HHHhhC-cccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            455676 3578899999999999994 88899998 8889999999999998774 78899999888753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.3e-09  Score=46.37  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .+.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            356678888888888888888888888887764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=5.4e-11  Score=61.19  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.++++|.|..|..    ...+..|.+.|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            4789999999999999999999999999999999999987653    3355556666665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.91  E-value=1.7e-09  Score=45.57  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=14.8

Q ss_pred             cCCCCccCCcccccccCchhHHHHHHhcCCC
Q psy10278         19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        19 ~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      .+++||.|..|++.|.....|..|++.|.++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            3444455555555554444444444444443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.89  E-value=2.2e-09  Score=45.31  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=15.2

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      |.+++||.|..|++.|.....|..|++.|.++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            34444445555555444444444444444443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.87  E-value=1.2e-09  Score=46.79  Aligned_cols=31  Identities=39%  Similarity=0.740  Sum_probs=16.1

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      +|.+++||.|+.|++.|.....|..|++.|.
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            3445555555555555555555555555444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=2e-09  Score=46.36  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=23.1

Q ss_pred             cCCCCceecc--CCCcccccHHHHHhhhhhcCCCCC
Q psy10278         74 HMPVKKYQCT--FCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        74 h~~~~p~~C~--~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      |++++||.|.  .|++.|...+.|..|+++|+++.+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            3566777777  477777777777777777666544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.84  E-value=3.8e-09  Score=44.14  Aligned_cols=30  Identities=27%  Similarity=0.502  Sum_probs=16.1

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      +|.|..|++.|.....|..|+.+|++++||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555555555555555555555555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.84  E-value=3.5e-09  Score=45.32  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +.+|+||.|..|+++|++.+.|..|+...
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py~   31 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHHT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCeE
Confidence            35677777777777777777777777443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.82  E-value=4.1e-09  Score=42.12  Aligned_cols=28  Identities=14%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ++||.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999887753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.81  E-value=4.9e-09  Score=42.40  Aligned_cols=29  Identities=24%  Similarity=0.497  Sum_probs=23.1

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            46788888888888888888888877664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.81  E-value=4.3e-09  Score=41.76  Aligned_cols=27  Identities=15%  Similarity=0.405  Sum_probs=23.0

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478899999999999999999988764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.80  E-value=3.3e-09  Score=42.19  Aligned_cols=27  Identities=19%  Similarity=0.577  Sum_probs=23.5

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998763

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=4.8e-09  Score=50.96  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      +.++++|.|..|++.|.....|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            445667777777777777777777777776643

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=3.5e-09  Score=45.38  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=25.8

Q ss_pred             cCCCCceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         74 HMPVKKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        74 h~~~~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |++++||.|.  .|++.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5678888887  4888888888888888887764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=4.4e-09  Score=44.60  Aligned_cols=31  Identities=39%  Similarity=0.864  Sum_probs=17.2

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.+++||.|+.|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4455555555555555555555555555544

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=6.1e-09  Score=45.11  Aligned_cols=31  Identities=32%  Similarity=0.588  Sum_probs=17.7

Q ss_pred             hcCCCCccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      +.+++||.|+.  |++.|.....|..|+++|++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34555566654  66666666666666555554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=7.8e-09  Score=43.78  Aligned_cols=31  Identities=32%  Similarity=0.404  Sum_probs=17.4

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.++++|.|+.|++.|.....|..|++.|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4455555555555555555555555555544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.74  E-value=1.3e-09  Score=45.29  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCCCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNPGTD  108 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  108 (110)
                      +||.|..|++.|...+.|..|+++|+++.+.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4788888999998888888888888877653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=7.5e-09  Score=44.44  Aligned_cols=34  Identities=24%  Similarity=0.560  Sum_probs=18.1

Q ss_pred             CCCCceeCC--CCCCCcCChHHHHHHHHhcCCCCce
Q psy10278         47 TREKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus        47 ~~~~~~~c~--~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      .++++|.|.  .|++.|.....|..|++.|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            344555555  3555555555555555555555543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.74  E-value=7.9e-09  Score=41.51  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4788888888888888888888877654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.73  E-value=1.1e-08  Score=42.18  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             CCceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ++||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4678887  7888888888888888887764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=5e-09  Score=44.74  Aligned_cols=31  Identities=26%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             hcCCCCccCCcccccccCc-hhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRK-ATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~-~~l~~h~~~~~~   48 (110)
                      |.+++||.|+.|++.|... ..|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            5556666666666666666 666666665544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.72  E-value=1.1e-08  Score=41.06  Aligned_cols=28  Identities=21%  Similarity=0.502  Sum_probs=20.9

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4677777888888877888887777654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.72  E-value=3.8e-10  Score=51.19  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=27.1

Q ss_pred             HHHhcCCCCceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         70 HVQRHMPVKKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        70 h~~~h~~~~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +...|.+++||.|.  .|++.|...+.|..|+++|+++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            33457778888885  5888888888888888887764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.8e-08  Score=42.67  Aligned_cols=31  Identities=32%  Similarity=0.759  Sum_probs=16.2

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.+++||.|+.|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4445555555555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.70  E-value=1e-08  Score=41.40  Aligned_cols=29  Identities=34%  Similarity=0.776  Sum_probs=20.9

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      +||.|..|++.|...+.|..|+++|+++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36777777777777777777777776653

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.70  E-value=1.4e-08  Score=40.07  Aligned_cols=26  Identities=31%  Similarity=0.614  Sum_probs=21.4

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57888888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.2e-08  Score=42.37  Aligned_cols=31  Identities=13%  Similarity=0.204  Sum_probs=15.5

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.+++||.|..|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            3444555555555555555555555544443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.68  E-value=2.1e-08  Score=40.97  Aligned_cols=28  Identities=21%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             Cceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            467886  7888888888888888887764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.67  E-value=1.3e-08  Score=40.81  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4677888888888888888887777654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.67  E-value=7.5e-09  Score=41.47  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=20.9

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677777888887777787777777654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1e-08  Score=43.85  Aligned_cols=32  Identities=19%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             HhcCCCCccCCcccccccCchhHHHH-HHhcCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLH-VRQHTR   48 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h-~~~~~~   48 (110)
                      +|.+++||.|+.|++.|.....|..| ++.|.+
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            35566666666666666666666666 555544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=3.4e-08  Score=41.77  Aligned_cols=31  Identities=35%  Similarity=0.458  Sum_probs=15.9

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      +.+++||.|+.|++.|.....|..|++.|.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3444555555555555555555555555443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.64  E-value=3.3e-08  Score=44.80  Aligned_cols=32  Identities=31%  Similarity=0.640  Sum_probs=19.0

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHH-hcCCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVR-QHTRE   49 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~   49 (110)
                      |.+++||.|..|++.|.....|..|++ .|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            455666666666666666666666666 55554

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.05  E-value=4.1e-09  Score=42.71  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            36788888888888888888888877654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.61  E-value=1.5e-08  Score=43.33  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=11.7

Q ss_pred             CCCceeCCCCCCCcCChHHHHHHH
Q psy10278         48 REKPYACPTCEFKTGDHNVLRKHV   71 (110)
Q Consensus        48 ~~~~~~c~~c~~~~~~~~~l~~h~   71 (110)
                      +++||.|..|++.|...+.|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            344444544555555544444444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=4.9e-09  Score=42.23  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4678888888888888888888877654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=6.8e-09  Score=40.76  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             CceeccCCCcccccHHHHHhhhhhc
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +||.|..|++.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4788888999999888888888775

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=4.6e-08  Score=39.45  Aligned_cols=28  Identities=29%  Similarity=0.467  Sum_probs=20.9

Q ss_pred             CceeccCCCcccccHHHHHhh-hhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDH-TLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H-~~~~~~~  105 (110)
                      +||.|..|++.|...+.|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            467888888888888888888 5666553

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.55  E-value=3.5e-08  Score=42.12  Aligned_cols=31  Identities=32%  Similarity=0.620  Sum_probs=16.3

Q ss_pred             hcCCCCccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.+++||.|.+  |++.|.....|..|++.|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34555555553  55555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.52  E-value=1e-07  Score=38.02  Aligned_cols=26  Identities=38%  Similarity=0.695  Sum_probs=14.0

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|+.|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            45555555555555555555555543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=1.5e-07  Score=38.53  Aligned_cols=27  Identities=26%  Similarity=0.552  Sum_probs=15.4

Q ss_pred             CCccCC--cccccccCchhHHHHHHhcCC
Q psy10278         22 KPFQCP--VCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        22 ~~~~C~--~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      +||.|.  .|++.|.....|..|++.|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            455565  566666555555555555554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.50  E-value=1.8e-07  Score=37.45  Aligned_cols=26  Identities=27%  Similarity=0.569  Sum_probs=12.6

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +|.|..|++.|.....|..|++.|.+
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhcc
Confidence            44444455555444445555444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.50  E-value=1.1e-07  Score=46.16  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCCCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK   50 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~   50 (110)
                      +.+++||.|..|++.|.....|..|++.|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            567899999999999999999999999999864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.49  E-value=3.8e-09  Score=43.80  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=15.3

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCCCc
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTREKP   51 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~~~   51 (110)
                      ||.|+.|++.|.....|..|++.|.++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            45555555555555555555555554443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.47  E-value=1e-07  Score=37.54  Aligned_cols=25  Identities=32%  Similarity=0.755  Sum_probs=15.1

Q ss_pred             CCccCCcccccccCchhHHHHHHhc
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      +||.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566666666666666666665554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.47  E-value=8e-08  Score=38.13  Aligned_cols=26  Identities=38%  Similarity=0.816  Sum_probs=14.5

Q ss_pred             CCccCCcccccccCchhHHHHHHhcC
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      +||.|+.|++.|.....|..|++.|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45555556555555555555555443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.47  E-value=1.4e-07  Score=37.59  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             Cceecc--CCCcccccHHHHHhhhhhcCC
Q psy10278         78 KKYQCT--FCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        78 ~p~~C~--~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +||.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478888  899999999999999888753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=37.62  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=16.1

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|+.|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            56666666666666666666665544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.44  E-value=1.6e-07  Score=37.45  Aligned_cols=26  Identities=35%  Similarity=0.613  Sum_probs=13.7

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|+.|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            45555555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=2.4e-07  Score=37.10  Aligned_cols=27  Identities=22%  Similarity=0.695  Sum_probs=14.4

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      ||.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=9.1e-08  Score=43.07  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=18.2

Q ss_pred             hcCCCCccCC--cccccccCchhHHHHHHhcCCC
Q psy10278         18 HKRLKPFQCP--VCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        18 ~~~~~~~~C~--~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      |.+++||.|.  .|++.|.....|..|++.|.++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            5555566663  4666666666666665555543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.41  E-value=8.5e-08  Score=37.86  Aligned_cols=25  Identities=36%  Similarity=0.838  Sum_probs=15.3

Q ss_pred             CCccCCcccccccCchhHHHHHHhc
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      +||.|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4566666666666666666665544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=2.1e-07  Score=36.97  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=13.0

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +|.|..|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            34455555555555555555554444

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.38  E-value=4.2e-07  Score=36.86  Aligned_cols=26  Identities=46%  Similarity=0.779  Sum_probs=12.6

Q ss_pred             CccCC--cccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCP--VCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~--~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|+  .|++.|.....|..|++.|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            44454  455555555555555444443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=4.4e-08  Score=39.48  Aligned_cols=27  Identities=41%  Similarity=0.634  Sum_probs=16.5

Q ss_pred             CCccCCcccccccCchhHHHHHHhcCC
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      +||.|..|++.|.....|..|++.|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            456666666666666666666655544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.8e-08  Score=39.15  Aligned_cols=26  Identities=46%  Similarity=0.792  Sum_probs=15.5

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45666666666666666666555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.36  E-value=2.3e-07  Score=36.35  Aligned_cols=24  Identities=29%  Similarity=0.596  Sum_probs=13.4

Q ss_pred             ccCCcccccccCchhHHHHHHhcC
Q psy10278         24 FQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      |.|..|++.|.....|..|++.|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            455555555555555555555544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.32  E-value=3.7e-07  Score=36.61  Aligned_cols=26  Identities=23%  Similarity=0.519  Sum_probs=14.1

Q ss_pred             CccCCcccccccCchhHHHH-HHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLH-VRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h-~~~~~~   48 (110)
                      ||.|+.|++.|.....|..| ++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            45555555555555555555 344443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=36.65  Aligned_cols=24  Identities=33%  Similarity=0.747  Sum_probs=15.9

Q ss_pred             CccCCcccccccCchhHHHHHHhc
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      ||.|+.|++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            566777777777666666666554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.1e-05  Score=38.68  Aligned_cols=48  Identities=19%  Similarity=0.398  Sum_probs=31.3

Q ss_pred             CCCCCcCChHHHHHHHH-hcCCCC------ceecc--CCCcccccHHHHHhhhhhcC
Q psy10278         56 TCEFKTGDHNVLRKHVQ-RHMPVK------KYQCT--FCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        56 ~c~~~~~~~~~l~~h~~-~h~~~~------p~~C~--~C~~~f~~~~~l~~H~~~~~  103 (110)
                      .|++.|.....|..|+. .|.+.+      +|.|.  .|++.+.....|..|+++.|
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            35566666666666653 454443      67786  58877777778888877654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.07  E-value=1.8e-06  Score=34.12  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=14.6

Q ss_pred             CccCC--cccccccCchhHHHHHHhcC
Q psy10278         23 PFQCP--VCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        23 ~~~C~--~c~~~~~~~~~l~~h~~~~~   47 (110)
                      ||.|.  .|++.|.....|..|++.|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45565  66666666666666655553

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.88  E-value=6e-05  Score=36.09  Aligned_cols=48  Identities=25%  Similarity=0.516  Sum_probs=39.3

Q ss_pred             CcccccccCchhHHHHHH-hcCCCC------ceeCC--CCCCCcCChHHHHHHHHhc
Q psy10278         27 PVCGFTTGRKATLQLHVR-QHTREK------PYACP--TCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        27 ~~c~~~~~~~~~l~~h~~-~~~~~~------~~~c~--~c~~~~~~~~~l~~h~~~h   74 (110)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|+..+.....|..|++..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            348999999999999985 687665      78886  7998888888999998853

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.81  E-value=4.3e-06  Score=45.18  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      .++|++||.|..|++.|.+.+.|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            467788888888888888888888888754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.49  E-value=0.00014  Score=39.63  Aligned_cols=93  Identities=15%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             hcHHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHH--hcCCC-CceeC------CCCCCCcCChHHHHHHHHhcC
Q psy10278          5 ADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVR--QHTRE-KPYAC------PTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus         5 ~~~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~--~~~~~-~~~~c------~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      .....+...++..-....++.|.+|...|.+...+..|..  .|... +.+.+      +.-+..+....    +.....
T Consensus        14 ~~~~~~~~~~~e~~~~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   89 (127)
T 1zu1_A           14 VGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDG   89 (127)
T ss_dssp             CSHHHHHHHHHHTTTTBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSC
T ss_pred             cchHHHhhhhccccccCCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccC
Confidence            3444555555432333467889999999999999999973  33211 01110      11111221111    112345


Q ss_pred             CCCceeccCCCcccccHHHHHhhhhh
Q psy10278         76 PVKKYQCTFCSYSCTERFRLKDHTLA  101 (110)
Q Consensus        76 ~~~p~~C~~C~~~f~~~~~l~~H~~~  101 (110)
                      +...|.|..|+..|.+...+..|+..
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTS
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCC
Confidence            67789999999999999999999864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.001  Score=29.51  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=12.1

Q ss_pred             ceeCCCCCCCcCChHHHHHHHH
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      .+.|+-|+..|.....|..|+.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4555555555555555555555

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.83  E-value=0.00018  Score=38.87  Aligned_cols=27  Identities=19%  Similarity=0.208  Sum_probs=16.4

Q ss_pred             cCCCCceeCCCCCCCcCChHHHHHHHH
Q psy10278         46 HTREKPYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        46 ~~~~~~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      ++|+++|.|..|++.|.+...|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            555556666666666666666666555

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.69  E-value=0.0021  Score=26.65  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      .|.|+.|.+.|.....|..|....|.++.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~~   33 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAGN   33 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSSC
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccCC
Confidence            37788888888888888888777766543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.74  E-value=0.02  Score=25.39  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=15.1

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ++.|+.|+..|.....|+.||+.-.++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             ceeCCcccccccchHHHHhhhhhcCcc
Confidence            455666666666556666665544443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.52  E-value=0.045  Score=30.95  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             cccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         28 VCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        28 ~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      .|+.... ...+..|... =.-.+..|+.|+..+ ....+..|.......++..|+.|+..+.. ..+..|..+..++..
T Consensus        89 GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             TCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             CCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            3544433 2345555432 122456888898776 55678889987778899999999988765 577888887776543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.78  E-value=0.071  Score=30.13  Aligned_cols=70  Identities=16%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhcCCCCce
Q psy10278          7 IKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY   80 (110)
Q Consensus         7 ~~~l~~h~~~~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~   80 (110)
                      ...|..|. ... .-.+..|+.|+..+ ....|..|....=......|+.|+..+.. ..+..|...+.|+.++
T Consensus        96 ~~~l~~H~-~~C-~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A           96 LRHLEDHQ-AHC-EFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             GGGHHHHH-TTC-TTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             HhHHHHHH-hcC-CceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            45666776 222 23457799999877 45668889876556667889999887644 4678899988887653

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=94.53  E-value=0.044  Score=22.06  Aligned_cols=26  Identities=27%  Similarity=0.600  Sum_probs=21.1

Q ss_pred             eeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ..|..|.+.++.-.+|.+|++..|+.
T Consensus        10 qhcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46888888888888888888877764

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.39  E-value=0.09  Score=21.84  Aligned_cols=28  Identities=21%  Similarity=0.173  Sum_probs=20.8

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ..++.|..|+.+|.....+..|++.-..
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~YC~   33 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFYCK   33 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHTSC
T ss_pred             cCcCeeccccceehhhHHHhhhheecCC
Confidence            3457788888888888888888775443

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.45  E-value=0.073  Score=26.29  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=16.2

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccc
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCT   90 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~   90 (110)
                      |.|..|+.... ...+..|...-.+...|.|-.|+..|.
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            44444443322 223344444333333455555555554

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=90.71  E-value=0.14  Score=26.70  Aligned_cols=11  Identities=55%  Similarity=1.204  Sum_probs=5.5

Q ss_pred             CccCCcccccc
Q psy10278         23 PFQCPVCGFTT   33 (110)
Q Consensus        23 ~~~C~~c~~~~   33 (110)
                      |+.|..||+.|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            34555555544

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=90.64  E-value=0.11  Score=30.52  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=16.7

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      .|.|..||..+.             |+.|+.|+.|+.
T Consensus       171 ~~~C~~CG~i~~-------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          171 FHLCPICGYIHK-------------GEDFEKCPICFR  194 (202)
T ss_dssp             EEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             EEEECCCCCEEc-------------CcCCCCCCCCCC
Confidence            578888887654             145788888875

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=90.17  E-value=0.027  Score=27.91  Aligned_cols=14  Identities=14%  Similarity=0.458  Sum_probs=10.5

Q ss_pred             CceeccCCCccccc
Q psy10278         78 KKYQCTFCSYSCTE   91 (110)
Q Consensus        78 ~p~~C~~C~~~f~~   91 (110)
                      -.|+|+.||--|..
T Consensus        50 F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           50 FVFKCPVCGEEFYG   63 (95)
T ss_dssp             SEEECTTTCCEEET
T ss_pred             HhhcCCCccHHHhc
Confidence            45899999877753

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=89.79  E-value=0.41  Score=25.72  Aligned_cols=26  Identities=12%  Similarity=0.152  Sum_probs=15.3

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      .+..|..|...|.....+..|++..+
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhc
Confidence            34566666666666666666666444

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=89.52  E-value=0.33  Score=18.98  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=16.7

Q ss_pred             eeccCCCcccccHHHHHhhhh
Q psy10278         80 YQCTFCSYSCTERFRLKDHTL  100 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~  100 (110)
                      +.|+.|.........+..|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            788888888888888877753

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.28  E-value=0.12  Score=26.12  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceec
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC   82 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C   82 (110)
                      ...|.+||+.|..   |..|+..++|..|..+
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCHHHH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCHHHH
Confidence            3567777776653   4567776666666544

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=87.35  E-value=0.11  Score=26.07  Aligned_cols=12  Identities=42%  Similarity=1.231  Sum_probs=5.8

Q ss_pred             ceeccCCCcccc
Q psy10278         79 KYQCTFCSYSCT   90 (110)
Q Consensus        79 p~~C~~C~~~f~   90 (110)
                      .|.|+.|+..|+
T Consensus        45 iW~C~~Cg~~~a   56 (83)
T 1vq8_Z           45 IWQCSYCDYKFT   56 (83)
T ss_dssp             EEEETTTCCEEE
T ss_pred             eEECCCCCCEec
Confidence            345555554443

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=86.66  E-value=0.46  Score=23.06  Aligned_cols=13  Identities=15%  Similarity=0.634  Sum_probs=7.7

Q ss_pred             CceeccCCCcccc
Q psy10278         78 KKYQCTFCSYSCT   90 (110)
Q Consensus        78 ~p~~C~~C~~~f~   90 (110)
                      ..|.|..|++.|+
T Consensus        43 GIW~C~~C~~~~A   55 (72)
T 3jyw_9           43 GIWTCSCCKKTVA   55 (72)
T ss_dssp             SCBCCSSSCCCCC
T ss_pred             CeEECCCCCCEEe
Confidence            3466666666654

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=86.18  E-value=0.66  Score=21.11  Aligned_cols=21  Identities=19%  Similarity=0.583  Sum_probs=17.9

Q ss_pred             ccCCcccccccCchhHHHHHH
Q psy10278         24 FQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        24 ~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      -.|.+|+..|....+++.|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            579999999998888888875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.00  E-value=0.97  Score=22.81  Aligned_cols=52  Identities=19%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhc-CCCCceeccC--CCcc
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH-MPVKKYQCTF--CSYS   88 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h-~~~~p~~C~~--C~~~   88 (110)
                      ...|.|++|...|..               |...+.||..|...... .++... .....+.|+.  |...
T Consensus         5 ~~~~~CPI~~~~~~d---------------PV~~~~cGh~f~r~cI~-~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---------------PVKNKVCGHTYEEDAIV-RMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSS---------------EEEESSSCCEEEHHHHH-HHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcC---------------CEEcCCCCCeecHHHHH-HHHHHccCcCCCCCCCcCcCccc
Confidence            345789998876644               44444578777766443 344432 2345678999  8754

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=85.91  E-value=0.91  Score=26.19  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             hHHHHHHHHhcCCCC-------ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         64 HNVLRKHVQRHMPVK-------KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        64 ~~~l~~h~~~h~~~~-------p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ...|..|++...-..       -|+|..|++-. .-.++..|++.|.-
T Consensus       132 GgrlieHlK~~~~~GqDyvFWQFYKCe~CgKYv-DId~~~~Hlk~Hg~  178 (226)
T 2czr_A          132 GAALVNHIKNNALAGQDYIFWQFYKCEECGKYV-DIENLEAHLREHGI  178 (226)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCCEE-EGGGHHHHHHTTTC
T ss_pred             hHHHHHHHHhccccCcceEEEEEEehhhcCcee-cHHHHHHHHHHcCc
Confidence            456778887554322       27888888743 34567778876653

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=85.86  E-value=0.37  Score=27.44  Aligned_cols=24  Identities=25%  Similarity=0.699  Sum_probs=14.7

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      .|.|+.||..+.             ++-|-.||.|+.
T Consensus       138 ~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          138 VYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             EEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             eeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            466777776653             145557777763

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=84.61  E-value=0.47  Score=25.57  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=18.0

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHH
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      ...+-|.+|+..|.+...+..|..
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHC
Confidence            345678888888888888877765

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=83.77  E-value=0.63  Score=27.37  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CCceeccCCCccccc-HHHHHhhhhhc
Q psy10278         77 VKKYQCTFCSYSCTE-RFRLKDHTLAK  102 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~-~~~l~~H~~~~  102 (110)
                      ..|..|..|+..|.+ -..|..|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            568999999999986 88899998754

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=83.17  E-value=0.26  Score=26.22  Aligned_cols=31  Identities=32%  Similarity=0.753  Sum_probs=19.8

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCccccc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTE   91 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~   91 (110)
                      .|.|+.|++.-....        .  ...|.|..|++.|+.
T Consensus        60 kytCPfCGk~~vKR~--------a--vGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           60 DHACPNCGEDRVDRQ--------G--TGIWQCSYCDYKFTG   90 (116)
T ss_dssp             CEECSSSCCEEEEEE--------E--TTEEEETTTCCEEEC
T ss_pred             CCcCCCCCCceeEec--------C--ceeEECCCCCCEEEC
Confidence            588888886321111        1  246899999988864

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.50  E-value=0.66  Score=22.32  Aligned_cols=31  Identities=23%  Similarity=0.596  Sum_probs=14.0

Q ss_pred             HHHHHhcCCCCceeccCCCcccccHHHHHhhh
Q psy10278         68 RKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT   99 (110)
Q Consensus        68 ~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~   99 (110)
                      ..|+......++..|..|+..+.. ..|..|.
T Consensus        33 ~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A           33 PAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             TTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             HhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            344433333445555555555443 3344444

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=82.37  E-value=0.78  Score=24.39  Aligned_cols=26  Identities=19%  Similarity=0.485  Sum_probs=16.9

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCce-eccCCCcc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKY-QCTFCSYS   88 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~-~C~~C~~~   88 (110)
                      .+.|..|+..|..            .+.++ .||.|+..
T Consensus        73 ~~~C~~CG~~~e~------------~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKP------------NALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECS------------CCSTTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeC------------CCCCCCcCccccCC
Confidence            3678888777654            13456 78888754

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.55  E-value=0.76  Score=22.56  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=15.0

Q ss_pred             eeccCCCcccc-------cHHHHHhhhhhcCC
Q psy10278         80 YQCTFCSYSCT-------ERFRLKDHTLAKHN  104 (110)
Q Consensus        80 ~~C~~C~~~f~-------~~~~l~~H~~~~~~  104 (110)
                      -.|..|++.+.       .=+.|..|+...|.
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            45666666654       23467777776664

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=80.55  E-value=0.35  Score=28.02  Aligned_cols=25  Identities=16%  Similarity=0.506  Sum_probs=15.2

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSY   87 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~   87 (110)
                      .|.|..||..+...            +.|-.||.|+.
T Consensus       155 ~~~C~~CG~~~~g~------------~~p~~CP~C~~  179 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------GAPELCPACAH  179 (191)
T ss_dssp             EEEETTTCCEEEEE------------ECCSBCTTTCC
T ss_pred             eEEECCCCCEeeCC------------CCCCCCCCCcC
Confidence            46777777665411            34557777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	4e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	3e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.001
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 4e-06
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYAC 54
          KP+ C  CG    R   L  H++Q HT E+P+ C
Sbjct: 4  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE 49
          +H   KP+ C  CG    R + L  H R HT E
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
          K F CP C     R   L  H++ H  +K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 33.4 bits (77), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
          + F C VC     R+  L+ H R HT EK
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 7e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPYAC 54
           P CG +   K  L+ H++ H+  + Y C
Sbjct: 6  EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.001
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
          R H+ EKPY C  C  +      ++ H+ + 
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQK 31

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (72), Expect = 0.001
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV 77
            R  T  KP+ CP C+      + L  H +RHM V
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (70), Expect = 0.004
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
           H   KP+ C  C  T  +K  L +H +++    
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.5 bits (69), Expect = 0.004
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
             Q    + Y C  C       + L KH + H
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.79
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.73
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.56
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.55
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.55
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.48
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.47
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.47
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.37
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.35
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.33
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.3
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.28
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.23
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.2
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.14
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.13
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.12
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.1
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.1
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.06
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.02
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.94
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.91
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.9
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.88
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.75
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.67
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.57
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.53
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.53
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.44
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.29
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.19
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.19
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.17
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.15
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.13
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.1
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.07
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.01
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.95
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.94
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.92
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.86
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.77
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.75
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.71
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.69
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.66
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.63
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.58
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.54
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.5
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.49
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.48
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.31
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.22
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.21
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.19
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.03
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.91
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.87
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.84
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.74
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.68
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.59
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.44
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.94
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.91
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.74
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.52
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.35
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.13
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.97
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.93
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.1
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.05
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.6
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.45
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.16
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	93.1
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.09
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.85
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.71
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.97
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.87
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	89.95
d1fu9a_	36	U-shaped transcription factor, different fingers {	89.46
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	87.8
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	87.5
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	86.85
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	85.95
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.58
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.95
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.59
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.41
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	81.08
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	80.73

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.9e-20  Score=84.53  Aligned_cols=53  Identities=21%  Similarity=0.494  Sum_probs=46.1

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCCcccccHHHHHhhhhhc
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +++|.| .||+.|.....|..|+++|++++||.|..|+++|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            478888 49999999999999988999999999999999999999999998765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-18  Score=79.80  Aligned_cols=53  Identities=28%  Similarity=0.510  Sum_probs=50.7

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCCCceeCCCCCCCcCChHHHHHHHHhc
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~h   74 (110)
                      |+||.|. ||+.|.....|..|+++|++++||.|..|++.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 9999999999999999999999999999999999999999999876

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=64.02  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             HhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         72 QRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        72 ~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ++|+||+||.|..|+++|.+.+.|..|+++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            47899999999999999999999999999998875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-15  Score=62.07  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             hcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         73 RHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        73 ~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +|++++||.|..|+++|.+.+.|..|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478999999999999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.8e-16  Score=66.14  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |+.+|++++||.|..||++|.+.++|..|+++|+++
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567889999999999999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=61.52  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             HhcCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         72 QRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        72 ~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ++|+||+||.|+.|++.|+..++|..|++.+|.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            36899999999999999999999999988777654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=7.9e-15  Score=62.33  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             HHHhcCCCCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         70 HVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        70 h~~~h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |.+.|++|+||.|..|+++|++.++|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45688999999999999999999999999888753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.4e-14  Score=59.29  Aligned_cols=33  Identities=12%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             cCCCCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         74 HMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        74 h~~~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      |+||+||.|..|++.|.+.++|..|+++|+++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            678999999999999999999999999988753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-13  Score=58.57  Aligned_cols=35  Identities=26%  Similarity=0.588  Sum_probs=23.2

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHH-hcCCCCceecc
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKKYQCT   83 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~-~h~~~~p~~C~   83 (110)
                      ++||.|..|++.|...+.|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            456666666666666666666654 56666766664

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.2e-13  Score=54.68  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |+||.|..|++.|.+.+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6889999999999999999999988865

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.6e-13  Score=57.46  Aligned_cols=37  Identities=35%  Similarity=0.674  Sum_probs=34.0

Q ss_pred             CCCCccCCcccccccCchhHHHHHH-hcCCCCceeCCC
Q psy10278         20 RLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYACPT   56 (110)
Q Consensus        20 ~~~~~~C~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~   56 (110)
                      .++||.|..|++.|.....|..|++ .|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999999999999999986 799999999963

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-13  Score=55.94  Aligned_cols=31  Identities=39%  Similarity=0.646  Sum_probs=18.7

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |++++||.|..|++.|...+.|..|++.|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            5556666666666666666666666665554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-13  Score=58.44  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=15.8

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      +|.+++||.|+.|+++|...+.|..|+++|+|
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            34445555555555555555555555444444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.30  E-value=9.1e-13  Score=52.68  Aligned_cols=28  Identities=21%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|+.|++.|.+.+.|..|+++|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5777777777777777777777777765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.3e-13  Score=51.20  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      +||+|.+||++|.+.+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999998874

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=52.19  Aligned_cols=28  Identities=25%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|+.|++.|.+.+.|..|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            4677777777777777777777777765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.3e-12  Score=53.11  Aligned_cols=31  Identities=29%  Similarity=0.507  Sum_probs=17.2

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |+|++||.|.+|++.|.....|..|++.|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            3455555555555555555555555555544

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.8e-12  Score=52.91  Aligned_cols=31  Identities=29%  Similarity=0.580  Sum_probs=16.7

Q ss_pred             hcCCCCccCCcccccccCchhHHHHHHhcCC
Q psy10278         18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        18 ~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |+|++||.|..|+++|...+.|..|++.|.+
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            5555555555555555555555555555543

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=3.5e-12  Score=53.96  Aligned_cols=31  Identities=39%  Similarity=0.740  Sum_probs=16.6

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHHhcC
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      +|++|+||.|+.|++.|.....|..|++.|.
T Consensus         5 ~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             ccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            3555555555555555555555555555543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.16  E-value=2.1e-11  Score=48.63  Aligned_cols=27  Identities=19%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~~   77 (110)
                      ||.|.+|++.|...+.|..|+++|+||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            445555555555555555555555544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=5.5e-12  Score=49.82  Aligned_cols=27  Identities=44%  Similarity=0.806  Sum_probs=14.5

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcC
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      |+||.|+.|++.|.....|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            345555555555555555555555554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.7e-11  Score=49.15  Aligned_cols=28  Identities=32%  Similarity=0.488  Sum_probs=23.0

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|++  |++.|+..+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.7e-11  Score=51.30  Aligned_cols=32  Identities=25%  Similarity=0.677  Sum_probs=24.1

Q ss_pred             eeCCC--CCCCcCChHHHHHHHHhcCCCCceecc
Q psy10278         52 YACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCT   83 (110)
Q Consensus        52 ~~c~~--c~~~~~~~~~l~~h~~~h~~~~p~~C~   83 (110)
                      |.|+.  |++.|.....|..|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            55654  778888888888888888888888775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.1e-11  Score=48.04  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=13.3

Q ss_pred             CccCCcccccccCchhHHHHHHhcCCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      ||.|++|++.|...+.|..|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            444555555555555555555544443

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=6.7e-12  Score=55.72  Aligned_cols=37  Identities=27%  Similarity=0.676  Sum_probs=27.7

Q ss_pred             HHHHHhcCCCCceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         68 RKHVQRHMPVKKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        68 ~~h~~~h~~~~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ..|+ .|++++||.|.+  |++.|+..+.|..|+++|+++
T Consensus         8 ~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           8 DKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            3444 377788888876  888888888888888888776

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-11  Score=49.01  Aligned_cols=28  Identities=32%  Similarity=0.662  Sum_probs=23.3

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|++  |+++|+..+.|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5888876  888888888888888888775

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.2e-11  Score=49.61  Aligned_cols=28  Identities=25%  Similarity=0.647  Sum_probs=16.3

Q ss_pred             HhcCCCCccCCcccccccCchhHHHHHH
Q psy10278         17 VHKRLKPFQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        17 ~~~~~~~~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      +|+||+||.|+.|++.|.....|..|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            3555666666666666666666665554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-10  Score=47.10  Aligned_cols=28  Identities=21%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             Cceecc--CCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCT--FCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~--~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|+  .|++.|+..+.|..|+++|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            577785  4888888888888888887775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.3e-10  Score=47.16  Aligned_cols=29  Identities=17%  Similarity=0.437  Sum_probs=25.0

Q ss_pred             CCceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |+||.|++  |++.|+..+.|..|+++|...
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68899987  999999999999999988764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.7e-10  Score=51.11  Aligned_cols=32  Identities=25%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             hcCCCCccCCc--ccccccCchhHHHHHHhcCCC
Q psy10278         18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        18 ~~~~~~~~C~~--c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      |.+++||.|.+  |++.|...+.|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            55666666654  666666666666666666554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.4e-10  Score=45.31  Aligned_cols=27  Identities=19%  Similarity=0.453  Sum_probs=23.1

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +||.|.+  |++.|+..+.|..|+++|++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6889977  99999999999999988864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.1e-10  Score=47.85  Aligned_cols=32  Identities=34%  Similarity=0.799  Sum_probs=28.9

Q ss_pred             ccCCc--ccccccCchhHHHHHHhcCCCCceeCC
Q psy10278         24 FQCPV--CGFTTGRKATLQLHVRQHTREKPYACP   55 (110)
Q Consensus        24 ~~C~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~   55 (110)
                      |.|+.  |++.|.....|..|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56776  999999999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.7e-10  Score=44.34  Aligned_cols=26  Identities=35%  Similarity=0.710  Sum_probs=13.9

Q ss_pred             CccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            455544  55555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.5e-10  Score=43.19  Aligned_cols=24  Identities=29%  Similarity=0.570  Sum_probs=12.1

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhc
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h   74 (110)
                      ||.|.+||+.|...+.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            445555555555555555555444

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.3e-10  Score=44.28  Aligned_cols=26  Identities=46%  Similarity=0.797  Sum_probs=12.9

Q ss_pred             CccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            445544  55555555555555554444

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.7e-10  Score=44.28  Aligned_cols=26  Identities=31%  Similarity=0.696  Sum_probs=20.8

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~  103 (110)
                      +||.|++  |++.|+..++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788877  8888888888888888764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.1e-09  Score=42.73  Aligned_cols=27  Identities=22%  Similarity=0.544  Sum_probs=14.2

Q ss_pred             ceeCC--CCCCCcCChHHHHHHHHhcCCC
Q psy10278         51 PYACP--TCEFKTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus        51 ~~~c~--~c~~~~~~~~~l~~h~~~h~~~   77 (110)
                      ||.|+  .|++.|...+.|..|+++|++|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            44552  3555555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.4e-09  Score=38.64  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=22.2

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |.+|..|++.|+.+..|..|++.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56888999999999999999988874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=6.7e-09  Score=39.37  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |+||.|..||+.|+.......|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999998873

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.4e-08  Score=41.00  Aligned_cols=28  Identities=25%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             CCCccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         21 LKPFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        21 ~~~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |+||.|++  |++.|.....|..|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            45666655  66666666666666666653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.1e-08  Score=36.89  Aligned_cols=28  Identities=18%  Similarity=0.535  Sum_probs=19.3

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      |+||+|..|...-...++|..|+++|++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4677777777666677777777776665

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=7.5e-09  Score=40.86  Aligned_cols=25  Identities=48%  Similarity=0.943  Sum_probs=13.6

Q ss_pred             CccCCc--ccccccCchhHHHHHHhcC
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~~~   47 (110)
                      ||.|++  |++.|...+.|..|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            455544  5555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.5e-08  Score=38.92  Aligned_cols=26  Identities=27%  Similarity=0.765  Sum_probs=17.4

Q ss_pred             CCccCCc--ccccccCchhHHHHHHhcC
Q psy10278         22 KPFQCPV--CGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        22 ~~~~C~~--c~~~~~~~~~l~~h~~~~~   47 (110)
                      +||.|++  |++.|...+.|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4666766  7777777777777766653

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5e-08  Score=37.43  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=23.5

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +||.|..  |++.++..++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5888876  99999999999999998775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=7e-08  Score=36.07  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             eeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ..|.+||++|...+.|..|+.+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46888888888888888888888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.9e-08  Score=35.57  Aligned_cols=26  Identities=46%  Similarity=0.836  Sum_probs=15.6

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      |.+|++|++.|..+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            34566666666666666666665543

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.9e-08  Score=37.06  Aligned_cols=29  Identities=45%  Similarity=0.945  Sum_probs=23.9

Q ss_pred             CCCccCCcccccccCchhHHHHHHhcCCC
Q psy10278         21 LKPFQCPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        21 ~~~~~C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      |+||.|++|...|..+..+.-|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57888888888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.1e-07  Score=34.18  Aligned_cols=27  Identities=26%  Similarity=0.647  Sum_probs=24.0

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      +|++|..|.......++|.+|+++|.+
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCcccccccchhcchhhHhhhhhcccC
Confidence            689999999999999999999998853

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.2e-07  Score=35.60  Aligned_cols=29  Identities=21%  Similarity=0.478  Sum_probs=21.4

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |+||.|+.|...|..+.-+.-|.++|-+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46777877877777777777777776654

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.3e-07  Score=34.04  Aligned_cols=27  Identities=22%  Similarity=0.720  Sum_probs=14.5

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      +||+|+.|......++.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            355555555555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.1e-07  Score=36.00  Aligned_cols=26  Identities=19%  Similarity=0.520  Sum_probs=10.7

Q ss_pred             eccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         81 QCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      .|..||+.|..--.|..|..+|.++.
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ek   32 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEK   32 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            34444444444444444444444433

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.3e-06  Score=32.87  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=8.4

Q ss_pred             ccCCCcccccHHHHHhhhhhcC
Q psy10278         82 CTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        82 C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |+.|+.....++-|.+|+++|+
T Consensus         4 C~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           4 CEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccCcccCCHHHHHHHHHHhc
Confidence            3333333333333333333333

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=8.9e-07  Score=33.32  Aligned_cols=27  Identities=30%  Similarity=0.800  Sum_probs=25.3

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcCCCC
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHMPVK   78 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~~~~   78 (110)
                      |.|+.|+.....++.|..|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.17  E-value=1.2e-06  Score=31.71  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             eeccCCCcccccHHHHHhhhhhcC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |+|..|.++|..++.|..|+++|-
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578888888888888888887764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-06  Score=33.76  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=29.6

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHhcCCCCcee
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ   81 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~   81 (110)
                      .+...|..||+.|.....|..|...|.+|+||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            356789999999999999999999999999973

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=1.9e-06  Score=35.31  Aligned_cols=30  Identities=20%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNPGT  107 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~~~  107 (110)
                      +.|.|..|++.|.+...|-.|+..|..+..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchHH
Confidence            457777777777777777777776665543

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=8.2e-07  Score=33.50  Aligned_cols=25  Identities=36%  Similarity=0.788  Sum_probs=13.1

Q ss_pred             CCccCCcccccccCchhHHHHHHhc
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~   46 (110)
                      +||.|.+||..|........|.+.|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555555555555555555554444

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.3e-06  Score=36.06  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             CCCCceeccCCCcccccHHHHHhhhh
Q psy10278         75 MPVKKYQCTFCSYSCTERFRLKDHTL  100 (110)
Q Consensus        75 ~~~~p~~C~~C~~~f~~~~~l~~H~~  100 (110)
                      +|-+||.|..|++.|.++.++..|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46789999999999999999988864

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.8e-06  Score=32.41  Aligned_cols=29  Identities=17%  Similarity=0.505  Sum_probs=24.9

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |+-|.|..|...|..+-.|+.|+.+|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56788999999999999999999988874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.3e-06  Score=32.97  Aligned_cols=28  Identities=21%  Similarity=0.630  Sum_probs=24.1

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||+|..|...-.++++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            6899999998889999999999877654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=3.4e-06  Score=30.94  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=13.8

Q ss_pred             eCCCCCCCcCChHHHHHHHHhcCCC
Q psy10278         53 ACPTCEFKTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus        53 ~c~~c~~~~~~~~~l~~h~~~h~~~   77 (110)
                      .|+.|.+.|.+...|..|-+.|+||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            3555555555555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.4e-06  Score=31.39  Aligned_cols=26  Identities=31%  Similarity=0.728  Sum_probs=22.2

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ||.|..|...|..+.+|.+||++...
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH   26 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAH   26 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhhh
Confidence            68899999999999999999987654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.3e-06  Score=31.41  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=15.0

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcCCC
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~~~   77 (110)
                      ..|..||+.|..++.|..|...|++|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            34555666666666666665555543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.9e-06  Score=31.70  Aligned_cols=28  Identities=36%  Similarity=0.813  Sum_probs=18.1

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..|....+..++|.-|+++.|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4666666666666666666666666553

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.3e-06  Score=30.64  Aligned_cols=26  Identities=42%  Similarity=0.662  Sum_probs=23.9

Q ss_pred             cCCcccccccCchhHHHHHHhcCCCC
Q psy10278         25 QCPVCGFTTGRKATLQLHVRQHTREK   50 (110)
Q Consensus        25 ~C~~c~~~~~~~~~l~~h~~~~~~~~   50 (110)
                      +|+.|.+.|.++..|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.92  E-value=4.8e-06  Score=31.20  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=19.0

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhc
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~  102 (110)
                      .||+|+.  |++.|+..+-|..|-++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5777865  888888888888887765

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.86  E-value=9.7e-06  Score=31.20  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      ||.|..|++.|+.+.-|..|...-|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            688888888888888888887766554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.9e-06  Score=32.35  Aligned_cols=27  Identities=26%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             CceeccC--CCcccccHHHHHhhh-hhcCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHT-LAKHN  104 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~-~~~~~  104 (110)
                      +||.|..  |.+.|+..+...+|+ +.|.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5788866  888888888888887 45443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.75  E-value=6.6e-06  Score=30.97  Aligned_cols=28  Identities=25%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CceeccC--CCcccccHHHHHhhhhhcCCC
Q psy10278         78 KKYQCTF--CSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        78 ~p~~C~~--C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      +||.|..  |.++|...-.|..|..+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5777754  888888888888888887764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=2.8e-05  Score=31.72  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=14.2

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcCC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHMP   76 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~~   76 (110)
                      .|.|..|++.|.+...|-.|+..|..
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcc
Confidence            35555555555555555555555543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.6e-05  Score=30.28  Aligned_cols=23  Identities=26%  Similarity=0.652  Sum_probs=11.2

Q ss_pred             CccCCc--ccccccCchhHHHHHHh
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQ   45 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~   45 (110)
                      ||.|.+  |++.+..+++|..|++.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            444444  44555555555555443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=29.07  Aligned_cols=26  Identities=31%  Similarity=0.894  Sum_probs=19.1

Q ss_pred             CCccCCcccccccCchhHHHHHHhcC
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVRQHT   47 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~~~~   47 (110)
                      +||+|..|.......++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            47777777777777777777777664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=3.2e-05  Score=27.83  Aligned_cols=23  Identities=26%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             ceeccCCCcccccHHHHHhhhhh
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLA  101 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~  101 (110)
                      ||+|..|...|.++..|..|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            68888888888888888888754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=3.3e-05  Score=28.90  Aligned_cols=26  Identities=42%  Similarity=0.715  Sum_probs=17.7

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      -|.|..|.+.|...-.|..||..|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            46677777777777677777766665

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=3.2e-05  Score=28.50  Aligned_cols=24  Identities=17%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             ceeccCCCcccccHHHHHhhhhhc
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      ||+|..||+.+..+.+|..|-...
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            789999999999999998887644

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=6.2e-05  Score=28.32  Aligned_cols=23  Identities=26%  Similarity=0.797  Sum_probs=13.1

Q ss_pred             CccCCcccccccCchhHHHHHHh
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQ   45 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~   45 (110)
                      ||.|..|.......+.|+.|+.+
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            55555555555555555555554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.50  E-value=5.5e-05  Score=27.17  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=11.8

Q ss_pred             eCCCCCCCcCChHHHHHHHHhc
Q psy10278         53 ACPTCEFKTGDHNVLRKHVQRH   74 (110)
Q Consensus        53 ~c~~c~~~~~~~~~l~~h~~~h   74 (110)
                      .|..|.+.|...+.|..|++.|
T Consensus         2 kcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            4555555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.8e-05  Score=28.77  Aligned_cols=23  Identities=30%  Similarity=0.839  Sum_probs=17.9

Q ss_pred             CccCCcccccccCchhHHHHHHh
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQ   45 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~   45 (110)
                      ||.|..|...|..+..|-.||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57788888888888888888765

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.48  E-value=4e-05  Score=28.62  Aligned_cols=24  Identities=29%  Similarity=0.701  Sum_probs=12.4

Q ss_pred             CccCCc--ccccccCchhHHHHHHhc
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~~   46 (110)
                      ||.|+.  |++.|..++.|++|..+|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  555555555555554443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00013  Score=27.00  Aligned_cols=25  Identities=32%  Similarity=0.655  Sum_probs=18.2

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |.+|+.|..+.+++..|+.|-++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5577777777777777777777664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00017  Score=29.59  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=16.5

Q ss_pred             CCCceeCCCCCCCcCChHHHHHHHH
Q psy10278         48 REKPYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        48 ~~~~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      |.+||.|..|++.|-+...+..|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4566777777777777666666654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.22  E-value=0.00011  Score=27.53  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=17.0

Q ss_pred             CccCCc--ccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPV--CGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~--c~~~~~~~~~l~~h~~~~~~   48 (110)
                      ||.|..  |.+.|.+.-.|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            566644  77777777777777666655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00011  Score=26.40  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=15.0

Q ss_pred             CccCCcccccccCchhHHHHHH
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      ||+|..|...|.++..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6677777777777766666653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=28.17  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=16.5

Q ss_pred             CCccCCc--ccccccCchhHHHHH-HhcC
Q psy10278         22 KPFQCPV--CGFTTGRKATLQLHV-RQHT   47 (110)
Q Consensus        22 ~~~~C~~--c~~~~~~~~~l~~h~-~~~~   47 (110)
                      +||.|..  |.+.|...+.-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3666655  777777766666665 4553

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00034  Score=28.27  Aligned_cols=26  Identities=23%  Similarity=0.306  Sum_probs=16.9

Q ss_pred             CCceec--cCCCcccccHHHHHhhhhhc
Q psy10278         77 VKKYQC--TFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        77 ~~p~~C--~~C~~~f~~~~~l~~H~~~~  102 (110)
                      ++||.|  +-|+..|.+...|..|+..|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            567777  44777777776666666544

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00023  Score=26.63  Aligned_cols=23  Identities=35%  Similarity=0.920  Sum_probs=16.3

Q ss_pred             CCccCCcccccccCchhHHHHHH
Q psy10278         22 KPFQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        22 ~~~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      +||+|..|.....+.++|..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHH
Confidence            46777777777777777777765

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.91  E-value=0.00061  Score=26.05  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=12.6

Q ss_pred             ceeCCCCCCCcCChHHHHHHHH
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      ||.|.+|++.|....-+..|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4555666666666555555555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00082  Score=26.27  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      .|.|.+|+++|+.+..+..|--.-.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47889999999988888888766555

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00075  Score=24.79  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             eeccCCCcccccHHHHHhhhhhcC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      |.|+.|+-....++.|+.|++.-|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            678888888888888888887544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00052  Score=27.74  Aligned_cols=26  Identities=38%  Similarity=0.755  Sum_probs=19.1

Q ss_pred             CCCccC--CcccccccCchhHHHHHHhc
Q psy10278         21 LKPFQC--PVCGFTTGRKATLQLHVRQH   46 (110)
Q Consensus        21 ~~~~~C--~~c~~~~~~~~~l~~h~~~~   46 (110)
                      ++||.|  +-|+..|.++..|..|..-|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            677888  44888888888777776654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00083  Score=24.57  Aligned_cols=22  Identities=45%  Similarity=0.794  Sum_probs=12.6

Q ss_pred             CccCCcccccccCchhHHHHHH
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      ||+|..||+.+..+..|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4556666666666555555543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00059  Score=28.97  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      -|.|..|++.|+....|++|-..|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4678888888888888888877664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.59  E-value=0.00074  Score=26.14  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             ceeccCCCcccccHHHHHhhhhhc
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      .|.|..||..|++.+.|..|+..-
T Consensus         8 rf~c~pcgirfss~stleahqtyy   31 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTTT
T ss_pred             ceeccccceeecChhHHHhhhhee
Confidence            388999999999999999998643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00076  Score=28.63  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=21.8

Q ss_pred             CccCCcccccccCchhHHHHHHhcCC
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVRQHTR   48 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~~~~~   48 (110)
                      .|.|..|++.|.....|..|..+|-.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            47899999999999999999887743

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0025  Score=23.40  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=14.7

Q ss_pred             eeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         52 YACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        52 ~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      -+|+.|+...++...|..|.+.|.
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            356666666666666666666553

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0049  Score=22.89  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=18.6

Q ss_pred             ceeccCCCcccccHHHHHhhhhhcCCC
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      .|.|..|++...+...+.-|+...|+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            367777777777777777776655543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.91  E-value=0.0037  Score=22.31  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=16.2

Q ss_pred             eeccCCCcccccHHHHHhhhhhc
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~  102 (110)
                      |.|+.|=+-|+.+.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            56777777777777777776653

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.003  Score=24.81  Aligned_cols=18  Identities=22%  Similarity=0.246  Sum_probs=9.8

Q ss_pred             CcCChHHHHHHHHhcCCC
Q psy10278         60 KTGDHNVLRKHVQRHMPV   77 (110)
Q Consensus        60 ~~~~~~~l~~h~~~h~~~   77 (110)
                      .|.....|..|++.|+||
T Consensus        16 pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          16 PFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCSSHHHHHHHTHHHHCC
T ss_pred             cchhHHHHHHHHhhcCCC
Confidence            455555555555555543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0023  Score=29.64  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             ceeccCCCcccccHHHHHhhhhh
Q psy10278         79 KYQCTFCSYSCTERFRLKDHTLA  101 (110)
Q Consensus        79 p~~C~~C~~~f~~~~~l~~H~~~  101 (110)
                      .|.|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            47788888888888888777764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.35  E-value=0.0094  Score=23.24  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      +.-|.|..|.+.++.-+++-.|..+-|..+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk~n   35 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHKRN   35 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcccC
Confidence            345667777777777777777766655443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.004  Score=24.47  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=18.3

Q ss_pred             CCcccccccCchhHHHHHHhcCCC
Q psy10278         26 CPVCGFTTGRKATLQLHVRQHTRE   49 (110)
Q Consensus        26 C~~c~~~~~~~~~l~~h~~~~~~~   49 (110)
                      |+--++.|.....|..|++.|+|+
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444456688889999999998875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.97  E-value=0.013  Score=24.61  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=16.9

Q ss_pred             CCceeccCCCcccccHHHHHhhhhhcC
Q psy10278         77 VKKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        77 ~~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      ++|-.|+.|+....+.-+|+.|+...|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            566666666666666666666665433

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0087  Score=22.11  Aligned_cols=20  Identities=20%  Similarity=0.228  Sum_probs=14.9

Q ss_pred             cCCCcccccHHHHHhhhhhc
Q psy10278         83 TFCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        83 ~~C~~~f~~~~~l~~H~~~~  102 (110)
                      +-|++.|+++..|..|.+.-
T Consensus         6 ~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHG
T ss_pred             CCchhhhccHHHHHhHHHHH
Confidence            45888888888888777643

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.10  E-value=0.017  Score=21.72  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=15.2

Q ss_pred             eec--cCCCcccccHHHHHhhhhhcCCC
Q psy10278         80 YQC--TFCSYSCTERFRLKDHTLAKHNP  105 (110)
Q Consensus        80 ~~C--~~C~~~f~~~~~l~~H~~~~~~~  105 (110)
                      |.|  +.|+..|.....|..|+-.|+++
T Consensus         4 ~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           4 YICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             EECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             eEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            445  34666666666666666665543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.05  E-value=0.018  Score=20.78  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=12.0

Q ss_pred             CCCcccccHHHHHhhhhhc
Q psy10278         84 FCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        84 ~C~~~f~~~~~l~~H~~~~  102 (110)
                      -|++.|.....|..|+-+|
T Consensus         8 ~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeecc
Confidence            3666666666666666554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.60  E-value=0.048  Score=20.10  Aligned_cols=26  Identities=27%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             ceecc--CCCcccccHHHHHhhhhhcCC
Q psy10278         79 KYQCT--FCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        79 p~~C~--~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      .|+|.  .|+..|+.+.++.+|....|+
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            46673  588999999999999876664

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.45  E-value=0.014  Score=23.43  Aligned_cols=9  Identities=44%  Similarity=1.475  Sum_probs=4.8

Q ss_pred             CccCCcccc
Q psy10278         23 PFQCPVCGF   31 (110)
Q Consensus        23 ~~~C~~c~~   31 (110)
                      .|.|++||.
T Consensus         5 ~~vC~vCGy   13 (36)
T d1yuza2           5 FHLCPICGY   13 (36)
T ss_dssp             EEECSSSCC
T ss_pred             EEECCCCCC
Confidence            355555554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.046  Score=19.97  Aligned_cols=19  Identities=11%  Similarity=0.228  Sum_probs=13.8

Q ss_pred             CCCcccccHHHHHhhhhhc
Q psy10278         84 FCSYSCTERFRLKDHTLAK  102 (110)
Q Consensus        84 ~C~~~f~~~~~l~~H~~~~  102 (110)
                      -|++-|...+.+++|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3777777777777777655

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.033  Score=25.13  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             CceeccCCCcccccHHHHHhhhhhcC
Q psy10278         78 KKYQCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        78 ~p~~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      ..|.|..|+..|..-..|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45889999998988888888887664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.09  E-value=0.095  Score=21.91  Aligned_cols=25  Identities=32%  Similarity=0.671  Sum_probs=18.1

Q ss_pred             CCceeCCCCCCCcCChHHHHHHHHh
Q psy10278         49 EKPYACPTCEFKTGDHNVLRKHVQR   73 (110)
Q Consensus        49 ~~~~~c~~c~~~~~~~~~l~~h~~~   73 (110)
                      +.|..|+.|+....++-+|..|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            4567777777777777777777764

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.85  E-value=0.016  Score=23.36  Aligned_cols=8  Identities=50%  Similarity=2.020  Sum_probs=4.3

Q ss_pred             ccCCcccc
Q psy10278         24 FQCPVCGF   31 (110)
Q Consensus        24 ~~C~~c~~   31 (110)
                      |.|++||.
T Consensus         6 ~~C~vCG~   13 (37)
T d1nnqa2           6 YICPICGY   13 (37)
T ss_dssp             EECTTTCC
T ss_pred             EECCCCCC
Confidence            55555554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.042  Score=24.79  Aligned_cols=34  Identities=24%  Similarity=0.627  Sum_probs=15.5

Q ss_pred             CceeCCCCCCCcCChHHHHHHHHhcCCCCceeccCCC
Q psy10278         50 KPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCS   86 (110)
Q Consensus        50 ~~~~c~~c~~~~~~~~~l~~h~~~h~~~~p~~C~~C~   86 (110)
                      ..|.|+.|++.|+....+.  + .......|.|..|+
T Consensus        13 ~~y~Cp~C~~~ys~Lda~~--L-~d~~~~~F~C~~C~   46 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEANQ--L-FDPMTGTFRCTFCH   46 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH--H-EETTTTEEBCSSSC
T ss_pred             CceECCCCCCCcchhhHHH--h-cCcCCCeEEecCCC
Confidence            3455666655554433321  1 22223445565554

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.1  Score=20.44  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=17.8

Q ss_pred             eeccCCCcccccHHHHHhhhhhcCCCC
Q psy10278         80 YQCTFCSYSCTERFRLKDHTLAKHNPG  106 (110)
Q Consensus        80 ~~C~~C~~~f~~~~~l~~H~~~~~~~~  106 (110)
                      ..|-+|-++|.+..++-.|+...|+.+
T Consensus         4 ltclecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheecccc
Confidence            456777777777777767766665544

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.024  Score=26.06  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=15.6

Q ss_pred             ceeCCCCCCCcCChHHHHHHHH
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQ   72 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~   72 (110)
                      .|-|..|++.|.+...|..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            4667777777777777777655

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.95  E-value=0.19  Score=25.79  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=13.7

Q ss_pred             ceeCCCCCCCcCChHHHHHHHHhcC
Q psy10278         51 PYACPTCEFKTGDHNVLRKHVQRHM   75 (110)
Q Consensus        51 ~~~c~~c~~~~~~~~~l~~h~~~h~   75 (110)
                      +-.|..|.+.|.....+..|++..+
T Consensus        15 ~~~CLFCd~~f~s~~~~l~H~k~~H   39 (121)
T d1wira_          15 HTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             cceecccCCccCCHHHHHHHHHHhh
Confidence            3455555555555555555555443

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.46  E-value=0.22  Score=19.46  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=15.3

Q ss_pred             eccCCCcccccHHHHHhhhhhcC
Q psy10278         81 QCTFCSYSCTERFRLKDHTLAKH  103 (110)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H~~~~~  103 (110)
                      -|..|+..|...+.+..|.+.-.
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~YC   32 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQFYC   32 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTS
T ss_pred             HHhhCCceehhHHHHHHHHHhcc
Confidence            46677777777777777765443

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=87.80  E-value=0.3  Score=26.51  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=25.5

Q ss_pred             hHHHHHHHHhcCCCC-------ceeccCCCcccccHHHHHhhhhhcCC
Q psy10278         64 HNVLRKHVQRHMPVK-------KYQCTFCSYSCTERFRLKDHTLAKHN  104 (110)
Q Consensus        64 ~~~l~~h~~~h~~~~-------p~~C~~C~~~f~~~~~l~~H~~~~~~  104 (110)
                      ...|..|++...-..       -|+|..|++-. .-.++..|++.|.-
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgKYv-Die~~~~H~k~HG~  170 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGKYV-DIENLEAHLREHGI  170 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCCEE-EGGGHHHHHHTTTC
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCcee-cHHHHHHHHHHcCc
Confidence            456778887554322       27888888743 34567788876653

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.50  E-value=0.044  Score=22.05  Aligned_cols=9  Identities=0%  Similarity=-0.415  Sum_probs=3.9

Q ss_pred             ceeccCCCc
Q psy10278         79 KYQCTFCSY   87 (110)
Q Consensus        79 p~~C~~C~~   87 (110)
                      .-.|..||-
T Consensus        22 ~g~CD~cg~   30 (37)
T d2ak3a2          22 MGIDDLTGE   30 (37)
T ss_dssp             TTBCTTTCC
T ss_pred             cCCccCCCC
Confidence            344444443

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.33  Score=20.32  Aligned_cols=22  Identities=18%  Similarity=0.548  Sum_probs=17.1

Q ss_pred             CccCCcccccccCchhHHHHHH
Q psy10278         23 PFQCPVCGFTTGRKATLQLHVR   44 (110)
Q Consensus        23 ~~~C~~c~~~~~~~~~l~~h~~   44 (110)
                      +-.|.+|+..+....+++.|+.
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHT
T ss_pred             cccCcccceeeeeecchHhhhh
Confidence            3578888888888888888864

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=0.14  Score=20.62  Aligned_cols=9  Identities=11%  Similarity=0.017  Sum_probs=4.3

Q ss_pred             eCCCCCCCc
Q psy10278         53 ACPTCEFKT   61 (110)
Q Consensus        53 ~c~~c~~~~   61 (110)
                      .|+.|+..|
T Consensus         4 ~C~~cG~~Y   12 (38)
T d1akya2           4 IHPASGRSY   12 (38)
T ss_dssp             ECTTTCCEE
T ss_pred             CCcCccchh
Confidence            444555444

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.95  E-value=0.11  Score=24.15  Aligned_cols=13  Identities=38%  Similarity=1.109  Sum_probs=7.9

Q ss_pred             CceeccCCCcccc
Q psy10278         78 KKYQCTFCSYSCT   90 (110)
Q Consensus        78 ~p~~C~~C~~~f~   90 (110)
                      ..|.|..|++.|+
T Consensus        44 GIW~C~kC~~~~A   56 (73)
T d1vqoz1          44 GIWQCSYCDYKFT   56 (73)
T ss_dssp             TEEEETTTCCEEE
T ss_pred             EEEECCCCCCEEe
Confidence            3466666666664

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.51  Score=16.56  Aligned_cols=18  Identities=22%  Similarity=0.501  Sum_probs=10.7

Q ss_pred             eccCCCcccccHHHHHhh
Q psy10278         81 QCTFCSYSCTERFRLKDH   98 (110)
Q Consensus        81 ~C~~C~~~f~~~~~l~~H   98 (110)
                      .|+.|...|.+......|
T Consensus         2 vcpycslrf~sp~lk~eh   19 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEH   19 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHh
Confidence            366777777666544444

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.41  E-value=0.12  Score=23.97  Aligned_cols=12  Identities=25%  Similarity=0.849  Sum_probs=7.6

Q ss_pred             ceeccCCCcccc
Q psy10278         79 KYQCTFCSYSCT   90 (110)
Q Consensus        79 p~~C~~C~~~f~   90 (110)
                      .|.|..|++.|+
T Consensus        45 IW~C~kC~~~~A   56 (73)
T d1jj2y_          45 IWMCGHCGYKIA   56 (73)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEECCCCCCEEe
Confidence            466666666664

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.08  E-value=0.19  Score=19.79  Aligned_cols=8  Identities=25%  Similarity=0.584  Sum_probs=3.7

Q ss_pred             ceeccCCC
Q psy10278         79 KYQCTFCS   86 (110)
Q Consensus        79 p~~C~~C~   86 (110)
                      .-.|..|+
T Consensus        22 ~g~CD~cG   29 (35)
T d1zina2          22 PGVCDKCG   29 (35)
T ss_dssp             TTBCTTTC
T ss_pred             CCcCCCCC
Confidence            34444444

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.73  E-value=0.47  Score=23.55  Aligned_cols=9  Identities=33%  Similarity=0.899  Sum_probs=4.4

Q ss_pred             eCCCCCCCc
Q psy10278         53 ACPTCEFKT   61 (110)
Q Consensus        53 ~c~~c~~~~   61 (110)
                      .|..||..|
T Consensus        69 ~CrkCGfvF   77 (105)
T d2gmga1          69 QCRKCGFVF   77 (105)
T ss_dssp             BBTTTCCBC
T ss_pred             hhhhcCCee
Confidence            455555444