Psyllid ID: psy10294

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MGPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRMSSNNNSEFLTQ
Secondary Structure (PSIPRED)
cccccccccccHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHEHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHccccEEcccccccHccc
Coil and Loop (DISEMBL)
mgpgfnssfvsmRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLtvnkfgkrpmslwstGICFVFTIALAICSmnlhwpgwiplTIFCICFWisgygilalpwmlmseifpvRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTktyigidwhRYYWRVVLAKSKQyrmssnnnsefltq
Flexible Loop (DISEMBL)
mgpgfnssFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKskqyrmssnnnsefltq
Low Complexity Region (SEG)
MGPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRMSSNNNSEFLTQ
Disordered region (IsUnstruct)
********FVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAK*****************
Disordered Region (DISOPRED)
MGPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV*************************************
Disordered Region (DISEMBL)
MGPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRMSSNNNSEFLTQ
Disordered Region (DISPRO)
****FNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRM***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRMSSNNNSEFLTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.685	0.192	0.288	1e-16
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.659	0.163	0.285	2e-15
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.659	0.172	0.291	4e-15
B4QBN2	857	Facilitated trehalose tra	N/A	N/A	0.659	0.173	0.285	5e-15
Q291H8	868	Facilitated trehalose tra	yes	N/A	0.659	0.171	0.279	6e-15
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.659	0.171	0.279	6e-15
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.659	0.174	0.279	7e-15
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.659	0.172	0.267	2e-14
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.659	0.173	0.279	3e-14
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.659	0.174	0.279	7e-14

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA- 73
           Y V+IFQ  G  +      ++ GV+    + ++++ +++ G R M L+ + +  + T+  
Sbjct: 607 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLG-RKMLLYISDVAMIITLMT 665

Query: 74  ------LAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGIC 127
                 +     ++   GW+PL  F I       G   +PW++M EI P +IRG A  + 
Sbjct: 666 LGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVA 725

Query: 128 AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRI 170
            A N    F+VTKT+   I   G HGT +++  I  IG A  I
Sbjct: 726 TAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVI 768

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Aedes aegypti (taxid: 7159)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI-- 72
           Y V+IFQ  G  +      ++ GV+    + ++++ +++ G++ + L+ + +  V T+  
Sbjct: 712 YTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRKVL-LYVSNVMMVLTLFV 770

Query: 73  --ALAICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                 C    M+    GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 771 LGGFFYCKSSGMDTSNVGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 828

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTK++   I + G HG  +++  I  IG 
Sbjct: 829 VATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGL 869

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
           Y V IF+  G  +      ++ GV+    + +++L +++ G++ + L+ + I  + T+ +
Sbjct: 667 YTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKIL-LYVSNIAMIITLFV 725

Query: 75  --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                    H P     GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 726 LGGFFYCKAHGPDVSHLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 783

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+   I   G HG  +++  I  IG 
Sbjct: 784 VATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGL 824

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
           Y V+IF+  G  + S    ++ G++    + +  L +++ G++ + L+ + I  + T+++
Sbjct: 658 YTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKIL-LYISDIAMILTLSI 716

Query: 75  --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                    H P     GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 717 LGGFFYCKAHGPDVSHLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGPAAS 774

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+       G HG  +++  I  +G 
Sbjct: 775 VVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGL 815

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila simulans (taxid: 7240)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI-- 72
           Y V IF+  G  +      ++ G++    + +++L +++ G++ + L+ + I  + T+  
Sbjct: 669 YTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKIL-LYVSNIAMIITLFV 727

Query: 73  --ALAICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                 C     ++   GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 728 LGGFFYCKSHGQDVSQLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPSKIRGSAAS 785

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+   I + G HG  +++  I  IG 
Sbjct: 786 VATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGL 826

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI-- 72
           Y V IF+  G  +      ++ G++    + +++L +++ G++ + L+ + I  + T+  
Sbjct: 670 YTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKIL-LYVSNIAMIITLFV 728

Query: 73  --ALAICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                 C     ++   GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 729 LGGFFYCKSHGQDVSQLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPSKIRGSAAS 786

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+   I + G HG  +++  I  IG 
Sbjct: 787 VATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGL 827

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
           Y V+IF+  G  +      ++ GV+    + +  L +++ G++ + L+++ I  V T+ +
Sbjct: 657 YTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAGRKIL-LYASDIAMVLTLFV 715

Query: 75  --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                    H P     GW+PLT  C   +I G+  G   +PW++M EI P +IRG A  
Sbjct: 716 LGGFFYCKAHGPDVSHLGWLPLT--CFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAAS 773

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  + N    F+VTKT+   +   G HG  +++  I  +G 
Sbjct: 774 VATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGL 814

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI-- 72
           Y V+IFQ  G  +      ++ GV+    + ++++ +++ G++ + L+ + +  + T+  
Sbjct: 664 YTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRAGRKIL-LYVSNVAMILTLFV 722

Query: 73  --ALAICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                 C    M+    GW+PL+  C   +I G+  G   +PW++M EI P +IRG A  
Sbjct: 723 LGGFFYCKSTGMDTSNVGWLPLS--CFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAAS 780

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTK++   I   G HG  +++  I  +G 
Sbjct: 781 VATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGL 821

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI-- 72
           Y V+IF+  G  +      ++ G++    + +  + +++ G++ + L+ + I  V T+  
Sbjct: 658 YTVQIFKDAGSTIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKIL-LYVSDIAMVLTLFV 716

Query: 73  --ALAICSMN---LHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                 C  N   +   GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 717 LGGFFYCKANGPDVSHLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 774

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+       G HG  +++  I  +G 
Sbjct: 775 VATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGL 815

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
           Y V+IF+  G  +      ++ GV+    + +  + +++ G++ + L+ + I  + T+ +
Sbjct: 657 YTVQIFKDAGSTIDGNICTIIVGVVNFLATFIGIVLIDRAGRKIL-LYVSNIAMILTLFV 715

Query: 75  --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                    H P     GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct: 716 LGGFFYCKAHGPDVSNLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 773

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           +  A N    F+VTKT+       G HG  +++  I  +G 
Sbjct: 774 VATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGL 814

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
291461573	507	sugar transporter 7 [Nilaparvata lugens]	0.703	0.313	0.408	4e-25
193664559	530	PREDICTED: facilitated trehalose transpo	0.690	0.294	0.356	1e-24
347965559	577	AGAP001236-PA [Anopheles gambiae str. PE	0.712	0.279	0.342	9e-24
170043906	566	sugar transporter [Culex quinquefasciatu	0.703	0.280	0.357	6e-23
157125518	570	sugar transporter [Aedes aegypti] gi|108	0.703	0.278	0.335	1e-21
193664561	470	PREDICTED: facilitated trehalose transpo	0.668	0.321	0.314	2e-17
193669080	515	PREDICTED: facilitated trehalose transpo	0.703	0.308	0.347	2e-17
157104959	806	sugar transporter [Aedes aegypti] gi|122	0.685	0.192	0.288	6e-15
312372485	422	hypothetical protein AND_20100 [Anophele	0.513	0.274	0.345	6e-14
242003132	387	conserved hypothetical protein [Pediculu	0.685	0.400	0.312	6e-14

>gi|291461573|dbj|BAI83421.1| sugar transporter 7 [Nilaparvata lugens]

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 98/159 (61%)

Query: 8   SFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGIC 67
           S + MRP+LV+IF+  G+P+ S WVLV++  L + GS+   LT++ FGKR ++  S  + 
Sbjct: 310 SLLGMRPFLVKIFEDMGMPMSSHWVLVISSGLQVVGSVTCMLTMHLFGKRHITFLSLSVS 369

Query: 68  FVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGIC 127
            V  I L I  M      WI   +F + F+ +G+G+  +PW+L+SEI+PV  RG+A G  
Sbjct: 370 VVSCILLGILLMMQAEHPWIAFFLFTLIFFATGFGVCPVPWVLLSEIYPVEGRGLAGGAS 429

Query: 128 AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166
           AA    + F+VTK+Y+  +  F ++GT FIYS    IGF
Sbjct: 430 AACYYFLGFIVTKSYINLVHLFDVYGTCFIYSAFGLIGF 468

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664559|ref|XP_001946897.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 97/160 (60%), Gaps = 4/160 (2%)

Query: 10  VSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV 69
           +  +PYL+ +F   G+P  ++W LV T +L + G+L++ LTV K GKRP++L S  +C  
Sbjct: 334 IPAKPYLITVFSEIGLPCSAQWTLVYTSILTLVGTLLNVLTVAKIGKRPITLVSMALCAF 393

Query: 70  FTIALAICSMNLHW----PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACG 125
             + + +  ++  +      WIP+ +    F+ SGYG+  +PWML+SEI+P + RG+A G
Sbjct: 394 SMLGIGMYMLSTTYFSFSSTWIPMILLNALFFFSGYGVFPIPWMLVSEIYPTKGRGIASG 453

Query: 126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
           + AA+  ++ F++TK ++    WF L G   +Y  IT +G
Sbjct: 454 LTAALAFLMTFILTKFFLEMQEWFTLPGLFIVYGSITLVG 493

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965559|ref|XP_321919.5| AGAP001236-PA [Anopheles gambiae str. PEST] gi|333470456|gb|EAA01784.5| AGAP001236-PA [Anopheles gambiae str. PEST]

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 17/178 (9%)

Query: 7   SSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
           S    MRPYLV+IFQ +GVPL + W  V TG+L +  ++V  +++   GKR +++ S  +
Sbjct: 331 SGLTGMRPYLVQIFQAYGVPLDANWATVSTGLLGLIANIVCMVSIKFVGKRRLAITSMAV 390

Query: 67  CFVFTIALAICSMNLHWPGW-----------------IPLTIFCICFWISGYGILALPWM 109
             +  I+L+I + N   PGW                 IP+ +F +  + +  G+L +PW+
Sbjct: 391 TALSCISLSIYAFNTFPPGWTSFDNHPGTSHVTSMGYIPMVLFFMLAFFTSVGVLPVPWI 450

Query: 110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFA 167
           L+SE+FP R R +ACGI AA++ ++ F+ TKTY    +   L G +  Y  +  +G A
Sbjct: 451 LLSEVFPFRNRSLACGITAALHYVMSFVTTKTYFNLESALSLPGVILFYGVMGMVGLA 508

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043906|ref|XP_001849608.1| sugar transporter [Culex quinquefasciatus] gi|167867183|gb|EDS30566.1| sugar transporter [Culex quinquefasciatus]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 17/176 (9%)

Query: 7   SSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
           S    MRPYLV+IFQ +GVPL + W  V TG+L +  ++V  +++   GKR ++L+S   
Sbjct: 325 SGLTGMRPYLVQIFQAYGVPLDANWATVSTGLLGLMANIVCMMSIKFVGKRRLALFSLCF 384

Query: 67  CFVFTIALAICSMNLHWPGW-----------------IPLTIFCICFWISGYGILALPWM 109
             +  I+LAI + N+  PGW                 IP+ +F +  + +  G+L +PW+
Sbjct: 385 TSLSCISLAIYAFNVFPPGWTSFDVHEKVNTADGLNYIPMLLFFLLAFSTSVGVLPVPWI 444

Query: 110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
           L+SE+FP + R +ACGI AA+N  + F+ TKTY    +   L G +  Y     IG
Sbjct: 445 LLSEVFPFKSRSMACGITAALNYAMTFVTTKTYFNLESSLSLPGVILFYGICGCIG 500

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125518|ref|XP_001654366.1| sugar transporter [Aedes aegypti] gi|108873601|gb|EAT37826.1| AAEL010219-PA [Aedes aegypti]

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 17/176 (9%)

Query: 7   SSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
           S    MRPYLV+IFQ +GVPL + W  V T +L +  ++V  +++   GKR ++L+S  +
Sbjct: 325 SGLTGMRPYLVQIFQAYGVPLDANWATVSTALLGLAANIVCMVSIKFVGKRRLALFSFTL 384

Query: 67  CFVFTIALAICSMNLHWPGW-----------------IPLTIFCICFWISGYGILALPWM 109
             +  ++LA+ + N+  PGW                 + + +F    + +  G+L +PW+
Sbjct: 385 TSLSCLSLAVYAFNVFPPGWSSSDAHDSVNTANGLNYLAMFLFFTLAFATSVGVLPVPWI 444

Query: 110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
           L+SE+FP + R +ACGI AA+N  + F+ TKTY    + F L G +  Y     IG
Sbjct: 445 LLSEVFPFKNRSLACGITAALNYAMTFVTTKTYFNLESSFSLPGVIMFYGICGAIG 500

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664561|ref|XP_001946962.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 93/159 (58%), Gaps = 8/159 (5%)

Query: 8   SFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGIC 67
           S V   PYLVE+F+TFG  +  +W +  +  +AI G +++ L VN+ GKR ++L +  IC
Sbjct: 285 SGVPFGPYLVEVFRTFGADVDVQWTVAFSLCIAIVGGILTVLLVNRLGKRFLTLTTLSIC 344

Query: 68  FVFTIALAICSMNLHW------PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRG 121
            +  I++ +  + ++W        W+ LT + I  +++ +GI+ + W+L++EIFP++ R 
Sbjct: 345 SICYISIGL--IGVYWTNSEQIKSWLLLTCYLISTFVASFGIMPIGWILLTEIFPMKSRN 402

Query: 122 VACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF 160
           + C IC+ ++ I+ F +TK Y   +     + T  I+ F
Sbjct: 403 ITCSICSTLSFILSFFMTKYYPDVVYLVDFYNTFTIFGF 441

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669080|ref|XP_001943832.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 7   SSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
           +S  +MRPY++E+F    VP+    + V +  L   G+L+    V   GKR +SL S   
Sbjct: 323 ASLTAMRPYMIEVFSRLQVPVSPSVLTVWSAALQGAGALICICLVRLVGKRVLSLVSMSC 382

Query: 67  CFVFTIALAICSMNLHWPGW-----IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRG 121
           C +  ++L   +       W     IPL +FC  ++    GI  +PW+L+SE+FP R RG
Sbjct: 383 CALCCLSLGAYTYLTTQHQWSPVPTIPLLLFCTLYFAMNLGISPVPWLLVSEVFPNRGRG 442

Query: 122 VACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
            A G CAA   I+ FLV+KT++   +   L+G  F+Y  +  IG
Sbjct: 443 EASGACAATFYIIAFLVSKTWLNLQSSVELYGCFFLYGILAAIG 486

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104959|ref|XP_001648649.1| sugar transporter [Aedes aegypti] gi|122069442|sp|Q17NV8.1|TRET1_AEDAE RecName: Full=Facilitated trehalose transporter Tret1 gi|108884141|gb|EAT48366.1| AAEL000567-PA [Aedes aegypti]

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA- 73
           Y V+IFQ  G  +      ++ GV+    + ++++ +++ G R M L+ + +  + T+  
Sbjct: 607 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLG-RKMLLYISDVAMIITLMT 665

Query: 74  ------LAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGIC 127
                 +     ++   GW+PL  F I       G   +PW++M EI P +IRG A  + 
Sbjct: 666 LGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVA 725

Query: 128 AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRI 170
            A N    F+VTKT+   I   G HGT +++  I  IG A  I
Sbjct: 726 TAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVI 768

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372485|gb|EFR20437.1| hypothetical protein AND_20100 [Anopheles darlingi]

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 17/133 (12%)

Query: 7   SSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
           S    MRPYLV+IFQ +GVPL + W  V TG+L +  ++V  L++   GKR ++L S  +
Sbjct: 208 SGLTGMRPYLVQIFQAYGVPLDANWATVSTGLLGLMANIVCMLSIKFVGKRKLALMSMTV 267

Query: 67  CFVFTIALAICSMNLHWPGW-----------------IPLTIFCICFWISGYGILALPWM 109
             +  I L+I + N    GW                 IP+ +F +  + +  G+L +PW+
Sbjct: 268 TALSCIGLSIYAFNSLPEGWTSFDIHTDTSHVSSKGYIPMVLFFMLAFFTSVGVLPVPWI 327

Query: 110 LMSEIFPVRIRGV 122
           L+SE+FP  + GV
Sbjct: 328 LLSEVFPFSLPGV 340

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003132|ref|XP_002422622.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505423|gb|EEB09884.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 11  SMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVF 70
           ++RP+++ I   FG P+   WV  ++ ++ + G +   + V K GKR +S+ S   C + 
Sbjct: 182 NIRPFMISILNEFGTPVNPIWVTAISSIVGMVGYISGMILVPKMGKRWVSILSMLGCALI 241

Query: 71  TIALAICSM--NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICA 128
              L+I     + +   W+P+ +F +  +I   GI  +PWML+SE+FP + RG+A G+ A
Sbjct: 242 NGLLSIYGFFFSDYNALWVPVVLFILLNFIWSLGIGQIPWMLISEVFPFKGRGIASGVVA 301

Query: 129 AINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
           AI+ I  F+  KTY +    F L G    +     +G
Sbjct: 302 AISYIQAFVFIKTYYSLQYSFSLAGAFGFFGLCAALG 338

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.676	0.189	0.284	1.1e-15
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.650	0.272	0.308	1.1e-15
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.668	0.309	0.290	1.9e-15
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.654	0.303	0.287	5.1e-15
UNIPROTKB|B4LPX5	911	Tret1 "Facilitated trehalose t	0.654	0.162	0.287	7.1e-15
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.654	0.172	0.281	8.3e-15
UNIPROTKB|B4QBN2	857	Tret1-1 "Facilitated trehalose	0.654	0.172	0.287	8.3e-15
UNIPROTKB|B3MG58	866	Tret1 "Facilitated trehalose t	0.654	0.170	0.293	8.4e-15
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.668	0.309	0.278	1.4e-14
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.654	0.170	0.281	1.8e-14

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 208 (78.3 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA- 73
             Y V+IFQ  G  +      ++ GV+    + ++++ +++ G++ M L+ + +  + T+  
Sbjct:   607 YTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATMLIDRLGRK-MLLYISDVAMIITLMT 665

Query:    74 ------LAICSMNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                   +     ++   GW+PL  F I  ++ G+  G   +PW++M EI P +IRG A  
Sbjct:   666 LGGFFYVKNSGQDVSQVGWLPLAAFVI--YVLGFSLGFGPIPWLMMGEILPGKIRGSAAS 723

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRI 170
             +  A N    F+VTKT+   I   G HGT +++  I  IG A  I
Sbjct:   724 VATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVI 768

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 50/162 (30%), Positives = 88/162 (54%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICF-VFTIA 73
             Y   IF      +++EW  +L G++ +  + VS+L V+K G+R + L ++GI   + T A
Sbjct:   345 YASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRILLL-ASGISMAISTTA 403

Query:    74 LAIC-------SMNLHWPGWIP---LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVA 123
             + +        +  +   GW+P   L +F I F I GYG   +PW++M E+F   I+G A
Sbjct:   404 IGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSI-GYG--PVPWLMMGELFATDIKGFA 460

Query:   124 CGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
               +    N ++ F+VTKT+V      G+ GT ++++ +T +G
Sbjct:   461 GSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTVVG 502

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 48/165 (29%), Positives = 83/165 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IF+  G  + S    ++ G++    + +  L +++ G++ + L+ + I  + T+++
Sbjct:   290 YTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKIL-LYISDIAMILTLSI 348

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   349 LGGFFYCKAHGPDVSHLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGPAAS 406

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF--ITGIGFAI 168
             +  A N    F+VTKT+       G HG  +++    I G+ F I
Sbjct:   407 VVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVI 451

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 46/160 (28%), Positives = 81/160 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IF+  G  + S    ++ GV+    + +  + +++ G++ + L+ + I  + T+++
Sbjct:   290 YTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGIILIDRLGRKIL-LYVSDIAMIVTLSI 348

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   349 LGGFFYCKAHGPDVSHLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGPAAS 406

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  A N    F+VTKT+       G HG  +++  I  +G
Sbjct:   407 VVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVG 446

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)]

 Score = 201 (75.8 bits), Expect = 7.1e-15, P = 7.1e-15
 Identities = 46/160 (28%), Positives = 84/160 (52%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IFQ  G  +      ++ GV+    + ++++ +++ G++ + L+ + +  V T+ +
Sbjct:   712 YTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRAGRKVL-LYVSNVMMVLTLFV 770

Query:    75 A----ICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                   C    M+    GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   771 LGGFFYCKSSGMDTSNVGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 828

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  A N    F+VTK++   I + G HG  +++  I  IG
Sbjct:   829 VATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIG 868

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 200 (75.5 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 45/160 (28%), Positives = 81/160 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IF+  G  +      ++ GV+    + +  L +++ G++ + L+++ I  V T+ +
Sbjct:   657 YTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRAGRKIL-LYASDIAMVLTLFV 715

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PLT F +  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   716 LGGFFYCKAHGPDVSHLGWLPLTCFVV--YILGFSVGFGPIPWLMMGEILPAKIRGAAAS 773

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  + N    F+VTKT+   +   G HG  +++  I  +G
Sbjct:   774 VATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVG 813

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)]

 Score = 200 (75.5 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 46/160 (28%), Positives = 81/160 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IF+  G  + S    ++ G++    + +  L +++ G++ + L+ + I  + T+++
Sbjct:   658 YTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKIL-LYISDIAMILTLSI 716

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PLT F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   717 LGGFFYCKAHGPDVSHLGWLPLTCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGPAAS 774

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  A N    F+VTKT+       G HG  +++  I  +G
Sbjct:   775 VVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVG 814

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B3MG58 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila ananassae (taxid:7217)]

 Score = 200 (75.5 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 47/160 (29%), Positives = 81/160 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V IF+  G  +      ++ GV+    + +++L +++ G++ + L+ + I  + T+ +
Sbjct:   667 YTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKIL-LYVSNIAMIITLFV 725

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   726 LGGFFYCKAHGPDVSHLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGSAAS 783

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  A N    F+VTKT+   I   G HG  +++  I  IG
Sbjct:   784 VATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIG 823

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 46/165 (27%), Positives = 83/165 (50%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V+IF+  G  + S    ++ G++    + +  + +++ G++ + L+ + I  + T+++
Sbjct:   290 YTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGRKIL-LYVSDIAMILTLSI 348

Query:    75 --AICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                      H P     GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   349 LGGFFYCKAHGPDVSHLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPAKIRGPAAS 406

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF--ITGIGFAI 168
             +  A N    F+VTKT+       G HG  +++    I G+ F I
Sbjct:   407 VVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVI 451

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 197 (74.4 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 45/160 (28%), Positives = 83/160 (51%)

Query:    15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
             Y V IF+  G  +      ++ G++    + +++L +++ G++ + L+ + I  + T+ +
Sbjct:   669 YTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKIL-LYVSNIAMIITLFV 727

Query:    75 A----ICS---MNLHWPGWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACG 125
                   C     ++   GW+PL+ F I  +I G+  G   +PW++M EI P +IRG A  
Sbjct:   728 LGGFFYCKSHGQDVSQLGWLPLSCFVI--YILGFSLGFGPIPWLMMGEILPSKIRGSAAS 785

Query:   126 ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG 165
             +  A N    F+VTKT+   I + G HG  +++  I  IG
Sbjct:   786 VATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIG 825

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-12
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-12
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-07
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	1e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 10/162 (6%)

Query: 15  YLVEIFQTFGV-PLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
           Y   IF+  GV    +  V ++ G +    + V+   V++FG+RP+ L       +    
Sbjct: 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365

Query: 74  LAICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACGI 126
           L I   +         G +   I  I  +I+ +  G   +PW+++SEIFP+ +R     I
Sbjct: 366 LGILGASFVTGSSKSSGNVA--IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423

Query: 127 CAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAI 168
             A N +  F+V   + T +   G+ G    +  +  +G   
Sbjct: 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF 465

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 15  YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
           Y   IF+T G+   S  V ++ GV+    + ++   V++FG+RP+ L       +  + L
Sbjct: 275 YSPTIFETLGL-SDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333

Query: 75  AICSMNLHWPGWI-PLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACGICAAIN 131
            +  + +        + I  I  +I+ +  G   +PW+++SE+FP+ +R  A  I  A N
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393

Query: 132 SIVCFLV 138
            +  FL+
Sbjct: 394 WLANFLI 400

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 15  YLVEIFQTFGVPLKSEWVL-VLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
           Y  EIF+T G       +  ++ GV+ +T ++++ +TV+KFG++P+ +       +   +
Sbjct: 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 352

Query: 74  LAIC-SMNLHWPGWIPLTIFCICFWISGYGILALP--WMLMSEIFPVRIRGVACGICAAI 130
           L          PG + L    + F+++ + +   P  W+L+SEIFP  IRG A  I  A 
Sbjct: 353 LGTAFYTQA--PGIVALL--SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408

Query: 131 NSIVCFLVTKTY 142
             I  + V+ T+
Sbjct: 409 QWIANYFVSWTF 420

Length = 479

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 40  AITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWIS 99
            + G  V+   V+  G++P+ L    I  V    L       H      L I+ +  + +
Sbjct: 348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN--HLSTHGFLAIYVLAQFFA 405

Query: 100 GYGILALPWMLMSEIFPVRIRGVACGICAA 129
            +G  A  +++  E+FP R R  A GI AA
Sbjct: 406 NFGPNATTFIVPGEVFPTRYRSTAHGISAA 435

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG0569|consensus	485		99.81
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.71
KOG0254|consensus	513		99.69
TIGR00893	399	2A0114 d-galactonate transporter.	99.67
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.65
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.63
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.63
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.63
PRK03545	390	putative arabinose transporter; Provisional	99.63
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.63
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.62
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.61
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.61
TIGR00895	398	2A0115 benzoate transport.	99.6
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.6
PRK11663	434	regulatory protein UhpC; Provisional	99.6
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.59
TIGR00891	405	2A0112 putative sialic acid transporter.	99.59
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.58
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.57
PRK10091	382	MFS transport protein AraJ; Provisional	99.57
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.57
TIGR00900	365	2A0121 H+ Antiporter protein.	99.56
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.55
TIGR00898	505	2A0119 cation transport protein.	99.54
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.53
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.52
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.52
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.51
PRK10642	490	proline/glycine betaine transporter; Provisional	99.51
KOG0255|consensus	521		99.51
PRK09874	408	drug efflux system protein MdtG; Provisional	99.5
PRK10054	395	putative transporter; Provisional	99.5
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.49
PRK10504	471	putative transporter; Provisional	99.49
PRK11043	401	putative transporter; Provisional	99.49
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.47
KOG1330|consensus	493		99.47
PRK12307	426	putative sialic acid transporter; Provisional	99.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.47
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.46
PRK03893	496	putative sialic acid transporter; Provisional	99.46
PLN00028	476	nitrate transmembrane transporter; Provisional	99.46
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.46
PRK09705	393	cynX putative cyanate transporter; Provisional	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
PRK10642	490	proline/glycine betaine transporter; Provisional	99.45
KOG0252|consensus	538		99.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.44
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.44
PRK03699	394	putative transporter; Provisional	99.43
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.42
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.41
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.38
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.37
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.37
PRK12382	392	putative transporter; Provisional	99.37
TIGR00901	356	2A0125 AmpG-related permease.	99.37
PRK05122	399	major facilitator superfamily transporter; Provisi	99.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.36
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.36
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.35
PRK10489	417	enterobactin exporter EntS; Provisional	99.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.34
PRK10489	417	enterobactin exporter EntS; Provisional	99.34
KOG0569|consensus	485		99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.33
PRK09952	438	shikimate transporter; Provisional	99.33
PRK12307	426	putative sialic acid transporter; Provisional	99.32
KOG0253|consensus	528		99.31
PRK15075	434	citrate-proton symporter; Provisional	99.31
PRK15075	434	citrate-proton symporter; Provisional	99.29
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.28
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.28
KOG2532|consensus	466		99.28
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.27
PRK11663	434	regulatory protein UhpC; Provisional	99.27
PRK11902	402	ampG muropeptide transporter; Reviewed	99.26
PTZ00207	591	hypothetical protein; Provisional	99.26
PRK05122	399	major facilitator superfamily transporter; Provisi	99.26
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.25
PRK09705	393	cynX putative cyanate transporter; Provisional	99.25
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.25
TIGR00891	405	2A0112 putative sialic acid transporter.	99.24
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.23
PRK12382	392	putative transporter; Provisional	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
PRK03633	381	putative MFS family transporter protein; Provision	99.23
KOG0254|consensus	513		99.22
PRK15011	393	sugar efflux transporter B; Provisional	99.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.22
PRK09952	438	shikimate transporter; Provisional	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.21
TIGR00898	505	2A0119 cation transport protein.	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.2
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.2
PRK10133	438	L-fucose transporter; Provisional	99.2
PRK15011	393	sugar efflux transporter B; Provisional	99.19
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.19
PRK09528	420	lacY galactoside permease; Reviewed	99.18
TIGR00893	399	2A0114 d-galactonate transporter.	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
KOG2615|consensus	451		99.16
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.16
PRK11010	491	ampG muropeptide transporter; Validated	99.15
KOG2504|consensus	509		99.13
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.13
PRK03545	390	putative arabinose transporter; Provisional	99.12
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
KOG2533|consensus	495		99.1
PRK09528	420	lacY galactoside permease; Reviewed	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.08
KOG3764|consensus	464		99.08
TIGR00805	633	oat sodium-independent organic anion transporter.	99.07
PRK03633	381	putative MFS family transporter protein; Provision	99.07
PRK03699	394	putative transporter; Provisional	99.06
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.05
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.04
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.02
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
PRK09874	408	drug efflux system protein MdtG; Provisional	99.0
TIGR00900	365	2A0121 H+ Antiporter protein.	98.99
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.98
PLN00028	476	nitrate transmembrane transporter; Provisional	98.96
TIGR00895	398	2A0115 benzoate transport.	98.96
PRK10504	471	putative transporter; Provisional	98.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.92
PRK11010	491	ampG muropeptide transporter; Validated	98.9
KOG0253|consensus	528		98.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.89
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.82
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.81
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.81
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.76
PRK10091	382	MFS transport protein AraJ; Provisional	98.76
KOG0252|consensus	538		98.76
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.75
PRK09669	444	putative symporter YagG; Provisional	98.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.71
PRK10429	473	melibiose:sodium symporter; Provisional	98.7
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.68
PRK09848	448	glucuronide transporter; Provisional	98.68
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.68
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.66
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.66
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.64
PRK11902	402	ampG muropeptide transporter; Reviewed	98.64
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.63
PF13347	428	MFS_2: MFS/sugar transport protein	98.62
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.6
TIGR00901	356	2A0125 AmpG-related permease.	98.57
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.56
PRK11462	460	putative transporter; Provisional	98.56
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.56
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.56
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.5
PRK11043	401	putative transporter; Provisional	98.49
PRK11462	460	putative transporter; Provisional	98.49
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.49
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.46
COG2211	467	MelB Na+/melibiose symporter and related transport	98.43
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.43
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.43
KOG2504|consensus	509		98.42
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.42
PRK10133	438	L-fucose transporter; Provisional	98.42
PRK10054	395	putative transporter; Provisional	98.42
KOG0255|consensus	521		98.41
PRK09669	444	putative symporter YagG; Provisional	98.41
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.39
KOG4686|consensus	459		98.39
KOG2816|consensus	463		98.37
KOG2532|consensus	466		98.37
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.37
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.36
PF13347	428	MFS_2: MFS/sugar transport protein	98.35
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.25
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.24
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.2
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.2
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.18
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.15
KOG2325|consensus	488		98.09
PRK09848	448	glucuronide transporter; Provisional	98.07
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.06
COG2211	467	MelB Na+/melibiose symporter and related transport	98.02
PF12832	77	MFS_1_like: MFS_1 like family	98.0
KOG2533|consensus	495		97.92
COG0477	338	ProP Permeases of the major facilitator superfamil	97.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.91
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.87
KOG3762|consensus	618		97.82
KOG2563|consensus	480		97.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.76
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.52
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.46
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.36
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.33
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.3
KOG2563|consensus	480		97.21
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.17
PTZ00207	591	hypothetical protein; Provisional	97.03
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.0
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.93
KOG1330|consensus	493		96.51
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.28
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.27
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.97
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.87
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.65
KOG3762|consensus	618		95.53
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.49
KOG3764|consensus	464		95.48
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.44
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.16
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.99
KOG2816|consensus	463		93.94
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	93.16
KOG2615|consensus	451		93.03
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.0
KOG0637|consensus	498		92.42
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.42
KOG3098|consensus	461		91.78
KOG4686|consensus	459		91.78
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	91.28
KOG3626|consensus	735		91.02
TIGR00805	633	oat sodium-independent organic anion transporter.	89.81
KOG4332|consensus	454		89.79
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	88.73
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	88.28
KOG1237|consensus	571		88.18
KOG3098|consensus	461		88.06
KOG3574|consensus	510		85.94
PRK03612	521	spermidine synthase; Provisional	83.37
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	82.09

>KOG0569|consensus

Probab=99.81  E-value=1.2e-18  Score=152.10  Aligned_cols=182  Identities=19%  Similarity=0.309  Sum_probs=155.2

Q ss_pred             cccccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhc
Q psy10294          3 PGFNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAIC-SMN   80 (226)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~   80 (226)
                      .+|++|.+.+.+|...++++.|++. ++.+.+...++...+.++++.++.||+|||++++.+..++.+..+.+... ...
T Consensus       280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~  359 (485)
T KOG0569|consen  280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS  359 (485)
T ss_pred             HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999998 77899999999999999999999999999999999999998833222221 222


Q ss_pred             CC---CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294         81 LH---WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI  157 (226)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (226)
                      +.   +..+..+...+.+...++.|.+|++|.+.+|++|++.|..+.++....+++..++....++.+.+.+|- ..|++
T Consensus       360 ~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~fil  438 (485)
T KOG0569|consen  360 NSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFIL  438 (485)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHH
Confidence            11   223344566777888889999999999999999999999999999999999999999999999999886 67888


Q ss_pred             HHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294        158 YSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       158 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~  199 (226)
                      +.+.+.+..              +..++++||  +|+.+|+.++
T Consensus       439 F~i~~~~~~--------------i~~~~~lPETkgr~~~eI~~~  468 (485)
T KOG0569|consen  439 FVIPLAIFL--------------IYLYRYLPETKGRTPYEIIEE  468 (485)
T ss_pred             HHHHHHHHH--------------HHHHHhCcccCCCCHHHHHHH
Confidence            888888887              788899999  7888888776

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.71  E-value=4e-16  Score=137.48  Aligned_cols=179  Identities=22%  Similarity=0.276  Sum_probs=127.2

Q ss_pred             ccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          6 NSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      ..+.+...+|.|.+.++.|.+. ...+......+...++.+++++++||+|||+.++.+..+..+..+....... ....
T Consensus       284 ~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~-~~~~  362 (479)
T PRK10077        284 FVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-TQAP  362 (479)
T ss_pred             HhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh-cCcc
Confidence            3445556678899999888876 4566666778888999999999999999999999988887774333322111 1112


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhchhhHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI------TWFGLHGTLFIY  158 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~  158 (226)
                      .............+.+.+..+..+.+++|.+|+++|+++.|+.+..+++++.+++.+.+.+.      +..+|+..++++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  442 (479)
T PRK10077        363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  442 (479)
T ss_pred             cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHH
Confidence            22222333333444444455777889999999999999999999999999999887777554      467888788888


Q ss_pred             HHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294        159 SFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       159 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~  199 (226)
                      +++..+..              +..+++.||  +++.+|.++.
T Consensus       443 ~~~~~~~~--------------~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        443 GCMGVLAA--------------LFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHH--------------HHHHhccccCCCCCHHHHHHH
Confidence            87766665              555556788  4555555444

>KOG0254|consensus

Probab=99.69  E-value=1.4e-15  Score=135.83  Aligned_cols=184  Identities=22%  Similarity=0.372  Sum_probs=149.8

Q ss_pred             CcccccccceecccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhc
Q psy10294          2 GPGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAIC-SMN   80 (226)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~   80 (226)
                      .++|++|++...+|.+++++..|.+.+......+.++...++..++.++.||+|||+.++.+...+.++.+..... ...
T Consensus       304 ~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~  383 (513)
T KOG0254|consen  304 LFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFA  383 (513)
T ss_pred             HHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999888643667778888889999999999999999999999999998833332221 111


Q ss_pred             ------CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q psy10294         81 ------LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGT  154 (226)
Q Consensus        81 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  154 (226)
                            .....+..+...+.+...+..+.++++|.+.+|.+|.+.|+++.++....+++.+++....++...+..+....
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~  463 (513)
T KOG0254|consen  384 LYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGT  463 (513)
T ss_pred             ccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence                  12335667777788888889999999999999999999999999999999999999888888887776554557


Q ss_pred             HHHHHHHHHHhhhhhhcccccccccce-eEEEEecc--CCCHHHHhhh
Q psy10294        155 LFIYSFITGIGFAIRIRGVACGICAAI-NSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       155 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~e--~~~~~~~~~~  199 (226)
                      |..+...+.+..              . ..++++||  +++.+|+++.
T Consensus       464 f~~f~~~~~~~~--------------~~fv~~~~pETkg~sleei~~~  497 (513)
T KOG0254|consen  464 FGYFGGICLLSL--------------IIFVFFFVPETKGLTLEEINEL  497 (513)
T ss_pred             HHHHHHHHHHHH--------------HHHheEEcccCCCCcHHHHHHH
Confidence            777777777776              5 67788999  7888888775

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.67  E-value=1.5e-15  Score=129.03  Aligned_cols=152  Identities=14%  Similarity=0.090  Sum_probs=118.0

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      ...+....|.+.+++|.+. +..+......++..++.++.|+++||+|||+.+..+..+..+.......      ..+..
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~   83 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF------AGAYV   83 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH------HcCHH
Confidence            3456677888888999987 7788888999999999999999999999999999888877774433333      12233


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+.....+.+.......+....+++|.+|+++|+++.++......++..+++.+.+.+.+..+|++.++..+.+..+..
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            3333333333322334456667899999999999999999999999999999999998899999999988877776665

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.65  E-value=1.7e-15  Score=129.85  Aligned_cols=152  Identities=11%  Similarity=0.004  Sum_probs=112.1

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +.....+.+|.+.+++|.+. +.++..+...++..++++..|+++||+|||+++............ ...     ...+.
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~-----~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL-----DPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-----HhccH
Confidence            34456778999999999998 667888889999999999999999999999876544333322221 112     11233


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..+...+++. +.+.+.........+|.+|+++|+++.++......+|..+++.+.+.+.+++|||+.|++.+.+..+..
T Consensus        80 ~~l~~~R~l~-G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        80 EWLLACQLLA-ALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHH-HhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            3333333333 223333334445668999999999999999999999999999999999999999999988888876665

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.63  E-value=4.6e-15  Score=126.64  Aligned_cols=153  Identities=15%  Similarity=0.140  Sum_probs=116.3

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +.....+..|.+.+++|.+. +..+......++..++.++.|++.||+|||+.+..+..+..+..+....      .++.
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~   93 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL------SNNI   93 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH------HccH
Confidence            34455667888999999987 7788888999999999999999999999999999888777774433333      1222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..+.....+.+.......+....++.|.+|+++|+++.++.+....++..+++.+.+.+.++.+|+..+++.+....+..
T Consensus        94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS  173 (385)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            22322232222222223345567889999999999999999999999999999999999999999998888777766654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.63  E-value=1.1e-14  Score=126.71  Aligned_cols=159  Identities=13%  Similarity=0.004  Sum_probs=119.4

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+.+..|.+.+++|.+. +.++..+...++..+++++.|++.||+|||+.+..+.++..+..+....      .++...+
T Consensus        26 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~l   99 (412)
T TIGR02332        26 NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF------ATGPESL   99 (412)
T ss_pred             hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH------hcCHHHH
Confidence            34455777788999988 6788889999999999999999999999999998888887774433333      1223333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhhHHHHHHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT------WFGLHGTLFIYSFITG  163 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~  163 (226)
                      .....+.+....+..+....+++|++|+++|+++.++.+....+|..+++.+.+++.+      ..|||+.|++.+...+
T Consensus       100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l  179 (412)
T TIGR02332       100 YLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSV  179 (412)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHH
Confidence            3333333333333445556688999999999999999999999999999999887764      3699999998877776


Q ss_pred             HhhhhhhcccccccccceeEEEEecc
Q psy10294        164 IGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       164 i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      +..              ++..+++||
T Consensus       180 ~~~--------------~~~~~~~~~  191 (412)
T TIGR02332       180 ILG--------------VMTWFWLDD  191 (412)
T ss_pred             HHH--------------HHHhhccCC
Confidence            655              445556787

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.63  E-value=6.6e-15  Score=131.03  Aligned_cols=174  Identities=19%  Similarity=0.269  Sum_probs=117.2

Q ss_pred             ccceecccHHHHHhhcCCCch-HHH------------HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPLK-SEW------------VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL   74 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~~-~~~------------~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~   74 (226)
                      ..+....|.|+++++.|.+.+ ...            ......++.+++.+++++++||+|||+.++.+..+..++....
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            445677788999988887642 111            1233444567788999999999999999988877776633222


Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q psy10294         75 AICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW------  148 (226)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  148 (226)
                      .. ... .................++.+..+..+.+.+|++|++.|+++.|+.+..+++++++++.+.+++.+.      
T Consensus       383 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (502)
T TIGR00887       383 GF-AYN-HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKG  460 (502)
T ss_pred             HH-HHH-hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccc
Confidence            22 110 0111111222222223344556677888899999999999999999999999999999999988773      


Q ss_pred             ----hchhhHHHHHHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhh
Q psy10294        149 ----FGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDW  198 (226)
Q Consensus       149 ----~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~  198 (226)
                          .++...++++++...+..              +.. +++||  +++.||+++
T Consensus       461 ~~~~~~~~~~~~i~~~~~~~~~--------------i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       461 YPTGIWMGHVLEIFALFMFLGI--------------LFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             ccccccchHHHHHHHHHHHHHH--------------HHh-eEeccCCCCCHHhhhC
Confidence                344556777777776665              433 56799  666666543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03545 putative arabinose transporter; Provisional

Probab=99.63  E-value=5.6e-15  Score=127.23  Aligned_cols=149  Identities=14%  Similarity=0.034  Sum_probs=114.7

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ....+|.+.+++|.+. +.++..+...++..++++..|++.||+|||+++..+..+..+..+....      .++...+.
T Consensus        28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~  101 (390)
T PRK03545         28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL------AWNFTVLL  101 (390)
T ss_pred             HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH------hccHHHHH
Confidence            3456788899999998 6788888888889999999999999999999999988887774333333      12233333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ......+.......+....++.|.+|+++|+++.|+......++..+++.+.+.+.+++|||+.|++.+.+.++..
T Consensus       102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~  177 (390)
T PRK03545        102 ISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            3333322222223355567888999999999999999999999999999999998899999999998888766654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=7.2e-15  Score=125.23  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=135.4

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .....+|++.+|+|++. ..++..+.+..+..+++++...+.||+.||++++....++.+..+....      .+++..+
T Consensus        31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al------Ap~f~~L  104 (394)
T COG2814          31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL------APSFAVL  104 (394)
T ss_pred             HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH------hccHHHH
Confidence            34556899999999998 7889999999999999999999999999999999999988885544444      3556666


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhhhhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIR  169 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  169 (226)
                      ...+...+.....+.++...+..|+.|+++|++++++......++..++.++..++-+.+|||.+|+..+.+..+..   
T Consensus       105 l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~---  181 (394)
T COG2814         105 LLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLAL---  181 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHH---
Confidence            66666665555566788888999999999999999999999999999999999999999999999999999988887   


Q ss_pred             hcccccccccceeEEEEec
Q psy10294        170 IRGVACGICAAINSIVCFL  188 (226)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~  188 (226)
                                 +..+..+|
T Consensus       182 -----------~~~~~~lP  189 (394)
T COG2814         182 -----------LLLWKLLP  189 (394)
T ss_pred             -----------HHHHHhCC
Confidence                       66666778

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.62  E-value=9e-15  Score=124.93  Aligned_cols=153  Identities=17%  Similarity=0.181  Sum_probs=117.5

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +.....+.+|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+..+..+.......      .++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~------~~~~   79 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL------AQTI   79 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH------HccH
Confidence            34456688999999999987 6778888899999999999999999999999999988887774443333      1222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..+.......+.......+....++.|.+|+++|+++.++.+....++..+++.+.+.+.++.+|++.+++.+.+..+..
T Consensus        80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            22333333323322233455567889999999999999999999999999999999999998999998888777766654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.61  E-value=9.5e-15  Score=127.07  Aligned_cols=150  Identities=12%  Similarity=0.064  Sum_probs=113.9

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ...+-+|.+.++++.+. ...+..+...++..++.++.|+++||+|||++++.+..+..+..+....      .++...+
T Consensus        34 ~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l  107 (413)
T PRK15403         34 LIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF------TTSMTQF  107 (413)
T ss_pred             hhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH------cCCHHHH
Confidence            34556777888899887 6778888889999999999999999999999999988777764443333      1233333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+.......+..+.+..|.+|+++|++++++......++..+++.+.+.+.+++|||+.|++.++...+..
T Consensus       108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~  184 (413)
T PRK15403        108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            33333322222222345567888999999999999999999999999999999888888899999998887766665

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.61  E-value=2.3e-15  Score=127.57  Aligned_cols=152  Identities=9%  Similarity=-0.022  Sum_probs=114.5

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      ...+....|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+..+..+..+....      ..+..
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~   84 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF------STSLW   84 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH------hhhHH
Confidence            3455667888888999988 6788888999999999999999999999999999998888774444333      12233


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVT-KTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+.....+.+.......+....+++|.+|+++|+++.++......++..+++ .+...+.+..+|++.+++.+.+..+..
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS  164 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            3333333333322333466677899999999999999999999999999998 466666677899998888777766654

>TIGR00895 2A0115 benzoate transport

Probab=99.60  E-value=1.2e-14  Score=124.14  Aligned_cols=150  Identities=19%  Similarity=0.173  Sum_probs=113.2

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ...++.|.+.+++|.+. +..+......++..++.++.++++||+|||+.+..+..+..+..+....      ..+...+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  108 (398)
T TIGR00895        35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL------ATNVTQL  108 (398)
T ss_pred             HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------ccchHHH
Confidence            44567888888899887 6677788888899999999999999999999999888777764333333      1222222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+.......+....++.|.+|+++|+++.++......++..+++.+.+.+.+..||+..+++.+.+..+..
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  185 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL  185 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence            22232222222233456677899999999999999999999999999999999999998999988887765555544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.60  E-value=1.9e-14  Score=124.37  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=115.1

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ...+|.+.+++|.+. +..+..+...+...+++++.|.++||+|||+.++.+..+..+..+....      .++...+..
T Consensus        40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~  113 (394)
T PRK10213         40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF------ANSFSLLLI  113 (394)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH------HChHHHHHH
Confidence            345788889999988 6678888889999999999999999999999999999998874433333      123333333


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.......+....+++|++|+++|+++.++......++..+++.+.+.+.+++|||+.|++.+.+..+..
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            333333333334466677889999999999999999999999999999999999999999999988776665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.60  E-value=1.3e-14  Score=126.94  Aligned_cols=149  Identities=12%  Similarity=0.113  Sum_probs=114.9

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ....+.|.+.+++|.+. +..+..+...++..+++++.|++.||+|||+.+.++.++..+..+....      ..+...+
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l  114 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF------SSSLWAF  114 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH------HhHHHHH
Confidence            45677899999999997 6778888999999999999999999999999999888888774444333      1222222


Q ss_pred             HHHH-HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFC-ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .... ..+.+.+.. .+....+++|++|+++|+++.++.+....++..+++.+.+.+.+.+|||+.|++.+++..+..
T Consensus       115 ~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        115 ALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            2222 222233322 345567889999999999999999999999999999999999999999999988777655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=5e-14  Score=122.81  Aligned_cols=168  Identities=21%  Similarity=0.381  Sum_probs=126.0

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC---
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW---   83 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~---   83 (226)
                      +...+..+.|.+.++.|.+. +..+......+...++.++.++++||+|||+.+..+..+..+..+...........   
T Consensus       299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (481)
T TIGR00879       299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS  378 (481)
T ss_pred             CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            34556778888888889887 55667778888889999999999999999999988877666633332210010011   


Q ss_pred             --chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         84 --PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                        .....+.....+..+++.+..+..+.+.+|.+|++.|+++.++.+....+++.+++.+.+.+.++.+|+..|++.+++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~  458 (481)
T TIGR00879       379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL  458 (481)
T ss_pred             cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence              133333444445555566666777778899999999999999999999999999999999999988999888888888


Q ss_pred             HHHhhhhhhcccccccccceeEEEEecc
Q psy10294        162 TGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      ..+..              +...++.||
T Consensus       459 ~~~~~--------------i~~~~~~~~  472 (481)
T TIGR00879       459 NVLGL--------------IFVYFFLPE  472 (481)
T ss_pred             HHHHH--------------HHHheeccc
Confidence            77776              555566777

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.59  E-value=1.3e-14  Score=124.83  Aligned_cols=154  Identities=8%  Similarity=0.032  Sum_probs=114.4

Q ss_pred             cccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294          7 SSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      .+......++|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.++.+.....+.......      .++
T Consensus        17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~------~~~   90 (392)
T PRK10473         17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL------AET   90 (392)
T ss_pred             HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH------hCc
Confidence            344455678999999999987 5677788888889999999999999999999999888777764333333      122


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ...+.....+.+.......+..+.++.|.+|+++|+++.++.+....++..+++.+...+.+..+|++.+++.+.+..+.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence            22222222222222222234566788999999999999999999988999999998888878889999888887776665


Q ss_pred             h
Q psy10294        166 F  166 (226)
Q Consensus       166 ~  166 (226)
                      .
T Consensus       171 ~  171 (392)
T PRK10473        171 L  171 (392)
T ss_pred             H
Confidence            5

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.59  E-value=3.4e-14  Score=121.88  Aligned_cols=149  Identities=18%  Similarity=0.218  Sum_probs=110.4

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ......|.+.+++|.+. +..+..+...++..+++++.|+++||+|||+.++.+..+..+..+....      .++...+
T Consensus        30 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l  103 (405)
T TIGR00891        30 LVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF------APGYITM  103 (405)
T ss_pred             HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH------hccHHHH
Confidence            34556788888899987 7778888999999999999999999999999999888777764333333      1223333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG--LHGTLFIYSFITGIG  165 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i~  165 (226)
                      .....+.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+  ||+.+++.+....+.
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            3333333322223345556788999999999999999999999999999999888887766  998887654444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.58  E-value=2.3e-14  Score=132.14  Aligned_cols=148  Identities=10%  Similarity=0.063  Sum_probs=107.6

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      +...+|.+.++++++. +..+..+...++.+++++++|+++||+|||+.++++.++..+..+...+      .++...+.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af------a~s~~~ll  259 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF------VQGYGFFL  259 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH------HhhHHHHH
Confidence            4456788888899987 6778888899999999999999999999999999988877774433333      12233333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------chhhHHHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-------------GLHGTLFI  157 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g~~~~~~~  157 (226)
                      ...++.+....+..+....+++|.+|++.|++..++...+..+|..+++.+...+...+             +||+.+++
T Consensus       260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i  339 (742)
T TIGR01299       260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV  339 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence            33333333333345777889999999999999999999999999888887766555433             57776666


Q ss_pred             HHHHHHHh
Q psy10294        158 YSFITGIG  165 (226)
Q Consensus       158 ~~~~~~i~  165 (226)
                      .++..++.
T Consensus       340 ~~lp~ll~  347 (742)
T TIGR01299       340 CAFPCVFA  347 (742)
T ss_pred             HHHHHHHH
Confidence            55544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.57  E-value=2.2e-14  Score=127.53  Aligned_cols=150  Identities=14%  Similarity=0.064  Sum_probs=113.4

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+...+|++.+++|.+. +.+|....+.++...+.+..|+++||+|||+.++.+..+..+..+....      .++...+
T Consensus        24 iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~------a~~~~~l   97 (495)
T PRK14995         24 VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF------SPTASWL   97 (495)
T ss_pred             HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH------cCCHHHH
Confidence            34566899999999987 7789999999999999999999999999999999999988874443333      1233333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+....+..+.....+.+.+ |+++|+++.|+......++..++|.+.+.+.++.|||+.|++...+..+..
T Consensus        98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~  175 (495)
T PRK14995         98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVM  175 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Confidence            33333333222223343334454555 789999999999999999999999999999999999999988776666554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.57  E-value=4.5e-14  Score=121.40  Aligned_cols=150  Identities=10%  Similarity=0.123  Sum_probs=115.1

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .....+|.+.+++|.+. +.++..+...++..+++++.|++.||+|||+++..+..+..+..+....      .++...+
T Consensus        21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~------~~~~~~l   94 (382)
T PRK10091         21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL------SSSYLML   94 (382)
T ss_pred             HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH------hCcHHHH
Confidence            44567889999999987 6788889999999999999999999999999999998888874444333      1233333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+.......+....++.|++|+++|+++.++......++..+++.+.+.+.+..+||+.|++.+.+..+..
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  171 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL  171 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence            33333322222222344556788999999999999999988899999999998888888999999998887766654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.57  E-value=1.8e-14  Score=126.98  Aligned_cols=151  Identities=18%  Similarity=0.156  Sum_probs=118.2

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      .......|.+.+++|.+. +..+......++..++.++.|+++||+|||+.++.+..+..+.......      .++...
T Consensus        19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~   92 (485)
T TIGR00711        19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV------APNLEL   92 (485)
T ss_pred             HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC------cCCHHH
Confidence            345567899999999987 6788889999999999999999999999999999988887774333333      223333


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.....+.+.......+....++.|.+|+++|+++.++......++..+++.+.+++.++++||+.|++.+.+..+..
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~  170 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVV  170 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHH
Confidence            333343333333334466678899999999999999999999999999999999999999999999888776665554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.56  E-value=7.6e-14  Score=117.84  Aligned_cols=154  Identities=8%  Similarity=-0.020  Sum_probs=112.6

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .....+|.+..+.+.+. +..+..+...+...++.++.|+++||+|||+.++.+..+..+...........+ ..+...+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   95 (365)
T TIGR00900        17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-GLNIWQV   95 (365)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHH
Confidence            34556778888888876 667888889999999999999999999999999988887766333222211111 1123333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      .....+.+.......+....++.|++|+++|+++.++.+....++..+++.+.+.+.++.||++.++..+....+.
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  171 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS  171 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3333333322223345566789999999999999999999999999999999999999999999888776655544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=4.5e-14  Score=121.93  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=111.6

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ......|.+.+++|.+. +..+......++..++.++.|+++||+|||+.+..+..+..+..+....     ..+ ...+
T Consensus        33 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~-~~~~  106 (406)
T PRK11551         33 SAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ-----AWD-FPSL  106 (406)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----hcc-HHHH
Confidence            34556788889999987 6778888999999999999999999999999999988777664333333     122 2222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+.......+....++.|.+|+++|+++.++.+....++..+++.+...+.+..+|+..+++.+....+..
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLV  183 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence            22232222222223355567889999999999999999999999999999888888888899988887766555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.55  E-value=1.1e-13  Score=119.84  Aligned_cols=151  Identities=12%  Similarity=0.106  Sum_probs=112.4

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ..+.+.+|.+.+++|.+. +..+......++..++.++.|+++||+|||+.++.+.....+..+....      .++...
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~------~~~~~~  103 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL------AQSIEQ  103 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH------HccHHH
Confidence            344566788888999987 6677788889999999999999999999999999888777764433333      122222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.....+.+.......+..+.++.|.+|+++|+++.++......++..++|.+.+.+.++.+|++.+++.+.+..+..
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~  181 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF  181 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            222333222222223355667888999999999999998888888889999998888888899999988777776654

>TIGR00898 2A0119 cation transport protein

Probab=99.54  E-value=7.5e-14  Score=124.05  Aligned_cols=144  Identities=18%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             ccHHHHHhhcCCC---c-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         14 PYLVEIFQTFGVP---L-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        14 ~~~~~~~~~~g~~---~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+.|.+.++++++   . +..+..+...++..+++++.|+++||+|||+.++++.++..+..+....      .++...+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF------SPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH------cccHHHH
Confidence            5677888888887   4 5678888999999999999999999999999999988887774444444      2334444


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+....+..+....++.|.+|+++|+++.++......+|..+++.+...+.+   ||+.+++.++..++..
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~  257 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFF  257 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHH
Confidence            4444444443434456777899999999999999999988888888888777654433   8988888777766554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.54  E-value=2.4e-14  Score=120.39  Aligned_cols=150  Identities=19%  Similarity=0.158  Sum_probs=116.9

Q ss_pred             eecccHH-HHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         11 SMRPYLV-EIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        11 ~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ...+..| .+.+++|.+. +..+..+...+...++.++.|+++||+|||+.+..+..+..+..+...+     ..+.+ .
T Consensus        14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-----~~~~~-~   87 (352)
T PF07690_consen   14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-----ASNFW-L   87 (352)
T ss_dssp             HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----HCCHH-H
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-----hhhHH-H
Confidence            4456677 6778889888 7788888999999999999999999999999999888888875222223     12333 3


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.....+.+.......+....++.|.+|+++|+++.++......++..+++.+.+.+.++++||+.+++.+.+..+..
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~  165 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA  165 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence            333333333333344566777899999999999999999999999999999999998888899999999888888775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.54  E-value=1.5e-13  Score=121.16  Aligned_cols=143  Identities=15%  Similarity=0.039  Sum_probs=98.9

Q ss_pred             CCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh---hc--CCCch-HHHHHHHHHHH
Q psy10294         24 GVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICS---MN--LHWPG-WIPLTIFCICF   96 (226)
Q Consensus        24 g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~---~~--~~~~~-~~~~~~~~~~~   96 (226)
                      +.+. +.++..+...++..+++++.|+++||+|||++++.+..+..+..+......   ..  ..... ...+.....+.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            6665 567888899999999999999999999999999998888766333322200   00  00111 22233333333


Q ss_pred             HHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhhHHHHHHHHHHHhh
Q psy10294         97 WISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------TWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        97 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +....+..+....+++|++|+++|+++.++.+....+|..+++.+...+.        +.+|||+.|++.+...++..
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~  208 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL  208 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence            33333344667778999999999999999999888888888766554332        35689999888766665554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.53  E-value=5.9e-14  Score=118.87  Aligned_cols=149  Identities=17%  Similarity=0.121  Sum_probs=109.2

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      +....+.|.+.+++|.+. +..+..+...++..+++++.|+++||+|||+++..+..+..+..+....      .++...
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~   93 (377)
T TIGR00890        20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI------ADSLAA   93 (377)
T ss_pred             hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH------HHHHHH
Confidence            455678999999999998 7788889999999999999999999999999999988887774333333      122333


Q ss_pred             HHHHHHH-HHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCIC-FWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.....+ +.+.+. ..+.......|.+| ++|+++.++......++..+.+++...+.+..+||+.+++.+++..+..
T Consensus        94 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  170 (377)
T TIGR00890        94 LYLTYGLASAGVGI-AYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVI  170 (377)
T ss_pred             HHHHHHHHhHHHHH-HHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3222222 222221 22233446677777 5699999999988888888877777777778899999988887776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.52  E-value=8.9e-17  Score=140.68  Aligned_cols=181  Identities=18%  Similarity=0.308  Sum_probs=137.3

Q ss_pred             cccccccceecccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHH--HHhhc
Q psy10294          3 PGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALA--ICSMN   80 (226)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~--~~~~~   80 (226)
                      +++.++.+.+..|.|.+.++.+.+.+ ........+...++.+++.++.||+|||+.++.+..++.++.....  . ...
T Consensus       263 ~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~-~~~  340 (451)
T PF00083_consen  263 FQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIF-FLG  340 (451)
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            45677778888999999988887755 3445566677778888888999999999999998888877333332  1 111


Q ss_pred             CCC---chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294         81 LHW---PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI  157 (226)
Q Consensus        81 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (226)
                      ...   .....+.........++.++++..+.+.+|.+|++.|+++.++....+++++.+.+.+.+.+.+..+-...+.+
T Consensus       341 ~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i  420 (451)
T PF00083_consen  341 VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLI  420 (451)
T ss_pred             cccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            111   13333444444445566677888889999999999999999999999999999999998888877763456788


Q ss_pred             HHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294        158 YSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       158 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~  199 (226)
                      ++.+..+..              +..++++||  +++.+|++++
T Consensus       421 ~~~~~~i~~--------------i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  421 FAGVCLIAI--------------IFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             hHHHHHHHH--------------hheeEEEeeCCCCCHHHHHhh
Confidence            888888877              788889999  8888888764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.52  E-value=3.4e-13  Score=116.12  Aligned_cols=149  Identities=11%  Similarity=-0.002  Sum_probs=109.9

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+..|.+.+++|.+. +..+......+...++.++.|+++||+|||+.+..+.....+..+....      .++...+.
T Consensus        27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~  100 (394)
T PRK11652         27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF------AHSLTVLI  100 (394)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH------HccHHHHH
Confidence            3455788889999998 6778888899999999999999999999999999888777664433333      12222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ....+.+.......+....+..|.+|.++|+++.++......++..+++.+.+.+.+..|||+.+++.+....+..
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            2222222211122344556778999999999999999888888999999999988888899999888776665543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.51  E-value=5.1e-13  Score=118.95  Aligned_cols=136  Identities=13%  Similarity=0.040  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHhccccchh
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW-PGWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      ..+......++..+++++.++++||+|||+++.++.++..+..+.... ..+... .+...+.....+.+....+..+..
T Consensus        58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~  136 (502)
T TIGR00887        58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL-SPGSSPKSVMATLCFWRFWLGVGIGGDYPLS  136 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-ccCcccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence            356778888999999999999999999999999888887774333333 111000 012233333333333333344667


Q ss_pred             hHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhchhhHHHHHHHHHHH
Q psy10294        108 WMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT-----------------------WFGLHGTLFIYSFITGI  164 (226)
Q Consensus       108 ~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~~~~i  164 (226)
                      ..+++|.+|+++|+++.++.+....+|..+++.+...+..                       .++||..+.+.++..++
T Consensus       137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i  216 (502)
T TIGR00887       137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL  216 (502)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH
Confidence            7899999999999999999999988888888777654322                       24799888665555544


Q ss_pred             h
Q psy10294        165 G  165 (226)
Q Consensus       165 ~  165 (226)
                      .
T Consensus       217 ~  217 (502)
T TIGR00887       217 A  217 (502)
T ss_pred             H
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.51  E-value=2.1e-13  Score=121.09  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             cccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      ...+.+..|+|.++++ .|++. +.........++..++.++.|+++||+|||+.+..+.+...+....... ... ...
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~-~~~  341 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI-LIN-SNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHh-CCC
Confidence            3455667789998854 68876 4455566677788899999999999999999888776654432222111 111 111


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITG  163 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  163 (226)
                      ...............+.+. +....+.+|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ |+.+++...+...
T Consensus       342 ~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            1122222222222222222 3344577899999999999998877788888889999888877654 5555554444444


Q ss_pred             Hh
Q psy10294        164 IG  165 (226)
Q Consensus       164 i~  165 (226)
                      +.
T Consensus       421 i~  422 (490)
T PRK10642        421 IG  422 (490)
T ss_pred             HH
Confidence            44

>KOG0255|consensus

Probab=99.51  E-value=2.2e-13  Score=121.71  Aligned_cols=130  Identities=21%  Similarity=0.243  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchh
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      ......++..++..+|++++|+++||+|||++++++..+..++.+....      .+++..+..+.++.+....+...+.
T Consensus       119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchhHHh
Confidence            4566788999999999999999999999999999999999996665555      4667777777777777777777888


Q ss_pred             hHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        108 WMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       108 ~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.+..|+++++.|+.+..+ ......++...+....++..  +||+.+++......+..
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~  248 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFL  248 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence            8999999999999999999 88888888888888888877  79999999888887775

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.50  E-value=3.8e-13  Score=115.98  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=110.7

Q ss_pred             ccceecccHHHHHhhcCCCc-hH-----HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KS-----EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL   81 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~   81 (226)
                      +.....+++|.+.+++|.+. +.     .+...+..+...++.++.|+++||+|||+.+..+.....+.......     
T Consensus        29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----  103 (408)
T PRK09874         29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL-----  103 (408)
T ss_pred             HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH-----
Confidence            33456678899999988875 32     45566777888899999999999999999998887776663333322     


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                       ..+...+.....+.+.. .+..+....++.|.+|+++|+++.++......++..+++.+.+.+.+..+|+..+++.+.+
T Consensus       104 -~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  181 (408)
T PRK09874        104 -AQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV  181 (408)
T ss_pred             -HhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence             12222222222222222 2334455567789999999999999999999999999999999998989999998888777


Q ss_pred             HHHhh
Q psy10294        162 TGIGF  166 (226)
Q Consensus       162 ~~i~~  166 (226)
                      ..+..
T Consensus       182 ~~~~~  186 (408)
T PRK09874        182 LFLCF  186 (408)
T ss_pred             HHHHH
Confidence            66554

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=1.7e-13  Score=118.50  Aligned_cols=153  Identities=7%  Similarity=0.042  Sum_probs=110.4

Q ss_pred             cccceecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      .+.+...+++|.+.+ ++|++. +..+..+...+...+++++.|+++||+|||+.++.+.....+..+....     .++
T Consensus        21 ~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~-----~~~   95 (395)
T PRK10054         21 IGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL-----VNN   95 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-----HhH
Confidence            344556677777664 589988 7788888888889999999999999999999998888777663333323     112


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      .+.............+ ...+....+.+|..|+++|+++.++.+....++..++|.+.+.+.+ .+|+..|+..++...+
T Consensus        96 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i  173 (395)
T PRK10054         96 VTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF  173 (395)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence            2222222222222222 2345566778899999999999999999999999999999888765 6899988877766655


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       174 ~~  175 (395)
T PRK10054        174 PL  175 (395)
T ss_pred             HH
Confidence            54

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.49  E-value=4.6e-13  Score=113.76  Aligned_cols=152  Identities=17%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             cccceecccHHH-HHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVE-IFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      ...+...++.|. +.+++|++. +..+......++..+++++.|+++||+|||+.++.+..+..+..+....     ...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~-----~~~   89 (366)
T TIGR00886        15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-----AVQ   89 (366)
T ss_pred             HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----Hhh
Confidence            344556778885 778899998 6788888999999999999999999999999999988888774433333     110


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hchhhH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW----------FGLHGT  154 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~  154 (226)
                      +...+.....+.+..+ +..+....+++|.+|+++|+++.++......++..+++.+.+.+.+.          .+||+.
T Consensus        90 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~  168 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA  168 (366)
T ss_pred             hHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence            3333333333332222 23334556888999999999999999877778877777776655542          379888


Q ss_pred             H-HHHHHHHHH
Q psy10294        155 L-FIYSFITGI  164 (226)
Q Consensus       155 ~-~~~~~~~~i  164 (226)
                      + +..+.+..+
T Consensus       169 ~~~~~~~~~~~  179 (366)
T TIGR00886       169 FVIVPAGILLL  179 (366)
T ss_pred             hHHHHHHHHHH
Confidence            8 333444333

>PRK10504 putative transporter; Provisional

Probab=99.49  E-value=2.5e-13  Score=119.65  Aligned_cols=152  Identities=13%  Similarity=0.015  Sum_probs=113.7

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      .+.+.++.|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.++.+..+..+..+....     ..+.+.
T Consensus        26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~  100 (471)
T PRK10504         26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL-----SGTLNE  100 (471)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-----hCCHHH
Confidence            3456678999999999987 5667778888888999999999999999999998887776663333233     122222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                       +.....+.+.......+....++.|.+|+++|+++.++......++..+++.+.+.+.++.|||+.|.+......+..
T Consensus       101 -l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~  178 (471)
T PRK10504        101 -LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGA  178 (471)
T ss_pred             -HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence             222222222222223456667888999999999999999999999999999999999999999999888766555544

>PRK11043 putative transporter; Provisional

Probab=99.49  E-value=7.1e-13  Score=114.41  Aligned_cols=149  Identities=11%  Similarity=0.057  Sum_probs=108.0

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+..|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+..+..+..+....      .++...+.
T Consensus        25 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~   98 (401)
T PRK11043         25 YLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW------VESAAQLL   98 (401)
T ss_pred             HHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH------hcCHHHHH
Confidence            3444566678889987 7788888999999999999999999999999999888777663333333      12222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ....+.+.......+....++.|.+|+++|++..+.......++..+++.+.+.+.+++|||..+++.+.+..+..
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            2222222111112233445778999999999998888888888999999999999999999998888777766554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.48  E-value=4.8e-13  Score=115.88  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=111.1

Q ss_pred             cccceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      .+.+...+++|.++ +++|.+. +.+.......+...+.+++.|+++||+|||+.+..+.....+..+....     .++
T Consensus        24 ~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~-----~~~   98 (400)
T PRK11646         24 LGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI-----AHE   98 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----hcc
Confidence            34455566777655 5678887 6677777778888888999999999999999999988888874444333     122


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      .+. +.......+.......+....++.|.+|+++|+++.|+......++..+++.+.+.+. .+||++.|++.+....+
T Consensus        99 ~~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~  176 (400)
T PRK11646         99 PWL-LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL  176 (400)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence            222 2222322222222233455567889999999999999999999999999999999888 67999988887766555


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       177 ~~  178 (400)
T PRK11646        177 AA  178 (400)
T ss_pred             HH
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.47  E-value=1.6e-12  Score=108.85  Aligned_cols=153  Identities=17%  Similarity=0.161  Sum_probs=117.6

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +........|.+.++.|.+. +..+......+...++.++.|+++||+|||+.+..+..+..+.......     . ++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~-----~-~~~   87 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF-----A-SSL   87 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH-----h-ccH
Confidence            44556777888999888887 6778888899999999999999999999999999888888875444444     1 223


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..........+.......+....+..|.+|+++|++..++.+....++..+++.+.+.+.+..+|+..+++.+....+..
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA  167 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33333333333322233455667899999999999999999999999999999999999998899988887766655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1330|consensus

Probab=99.47  E-value=5.2e-15  Score=126.66  Aligned_cols=154  Identities=10%  Similarity=-0.040  Sum_probs=127.3

Q ss_pred             HHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q psy10294         16 LVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCI   94 (226)
Q Consensus        16 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      .+.+.+.+|+++ ..+.......+...++++++|++.||++||+++.+|..+..+..++..+      ....+.+++...
T Consensus        56 ~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f------s~~Fwq~~l~R~  129 (493)
T KOG1330|consen   56 LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF------SNHFWQVLLCRG  129 (493)
T ss_pred             hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            445556678887 6778889999999999999999999999999999999999887766666      244555555665


Q ss_pred             HHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHhhhhhhccc
Q psy10294         95 CFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGIGFAIRIRGV  173 (226)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~  173 (226)
                      +.+..-....++...+++|.||..+|+++.++.+....+|+.++..+...+.++.+ ||+.|+..+++..+..       
T Consensus       130 ~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~-------  202 (493)
T KOG1330|consen  130 FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVG-------  202 (493)
T ss_pred             HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHH-------
Confidence            55555556678888999999999999999999999999999999888887777666 9999999999888877       


Q ss_pred             ccccccceeEEEEecc
Q psy10294        174 ACGICAAINSIVCFLV  189 (226)
Q Consensus       174 ~~~~~~~~~~~~~~~e  189 (226)
                             ++.+++.+|
T Consensus       203 -------~L~~~f~~e  211 (493)
T KOG1330|consen  203 -------LLVFLFVRE  211 (493)
T ss_pred             -------HHHHhhccC
Confidence                   666677777

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.47  E-value=1.4e-12  Score=113.31  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+..|.+.+++|.+. +..+..+...++..+++++.|+++||+|||+.+..+.....+.......      ..+...+.
T Consensus        37 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~------~~~~~~l~  110 (426)
T PRK12307         37 IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL------ASGVIMLT  110 (426)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH------HhHHHHHH
Confidence            3556778888899987 6778888899999999999999999999999999999888874433333      12233333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF  160 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  160 (226)
                      ....+.+....+..+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+||+.+++...
T Consensus       111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            3333332222233455667889999999999999999999999999999888888888899998876443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.47  E-value=5.4e-13  Score=113.55  Aligned_cols=153  Identities=10%  Similarity=-0.038  Sum_probs=103.8

Q ss_pred             ccceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHH-HHHHHHHHHHHHHhhcCCCc
Q psy10294          8 SFVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWST-GICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         8 ~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~-~~~~i~~~~~~~~~~~~~~~   84 (226)
                      +.....+.+|.+. +++|.+. +..+..+...+...+.+++.|.++||+|||+.++... ....+.......      .+
T Consensus        12 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~   85 (375)
T TIGR00899        12 AGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW------NR   85 (375)
T ss_pred             HHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh------cc
Confidence            3445566677665 5689887 6677778888888899999999999999988765543 333333222222      12


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVA--CGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFIT  162 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  162 (226)
                      ++..+.......+.......+....+..|..|++.|+++  .+.......++..+++.+.+.+.++++||+.+++.+...
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~  165 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF  165 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence            233333223322233333445555677788887777754  577777788999999999999989899999999888776


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      .+..
T Consensus       166 ~~~~  169 (375)
T TIGR00899       166 VLCG  169 (375)
T ss_pred             HHHH
Confidence            6554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.46  E-value=5.4e-13  Score=117.48  Aligned_cols=141  Identities=9%  Similarity=-0.025  Sum_probs=106.2

Q ss_pred             hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Q psy10294         22 TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISG  100 (226)
Q Consensus        22 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (226)
                      +++.+. +.+...+...++..++.++.|+++||+|||+.+..+.++..+..+.... .   .......+....++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~r~~~G~~~  145 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPW-A---AGGGIALVVFCRVIQGLAQ  145 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHH-H---HHcCchHHHHHHHHHHHhc
Confidence            566766 5567788889999999999999999999999999888877763332221 0   0122223333344333333


Q ss_pred             ccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHhh
Q psy10294        101 YGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-GLHGTLFIYSFITGIGF  166 (226)
Q Consensus       101 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~  166 (226)
                      ....+....+++|++|+++|+++.++......++..+++.+.+.+.+.+ |||..|++.+++..+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~  212 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWS  212 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHH
Confidence            3445666778999999999999999999999999999999999988884 99999988877766654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=9.3e-13  Score=116.68  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=109.3

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ......|.+.+++|.+. +..+......++..++.++.|+++||+|||+.++.+..+..+..+....      ..+...+
T Consensus        38 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l  111 (496)
T PRK03893         38 LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF------APGYWTL  111 (496)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH------HhHHHHH
Confidence            34456788888899987 6678888888999999999999999999999999888877774333333      1223333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF  160 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  160 (226)
                      .....+.+....+..+....++.|.+|+++|+++.++......++..+++.+.+.+.++++||+.+++...
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        112 FIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            33333333333334455567888999999999999999999999999999999999999999988776433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.46  E-value=1.1e-12  Score=116.09  Aligned_cols=150  Identities=13%  Similarity=0.038  Sum_probs=104.1

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      +...++.|.+.+++|++. +..+..+...++..++.++.|+++||+|||+++..+.++..+..+....     .. +...
T Consensus        53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~-s~~~  126 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL-----VS-SATG  126 (476)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-----hc-CHHH
Confidence            345667888999999987 6667777788888999999999999999999998888777664433333     12 2222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchhhHHHHHH
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT---------WFGLHGTLFIYS  159 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~  159 (226)
                      +....++.+....+..+ ...+++|++|+++|+++.|+.+....++..+++.+.+.+..         ..|||+.|++.+
T Consensus       127 l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        127 FIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            22222222222222222 33467899999999999999987777777777665554432         258999999888


Q ss_pred             HHHHHhh
Q psy10294        160 FITGIGF  166 (226)
Q Consensus       160 ~~~~i~~  166 (226)
                      ++.++..
T Consensus       206 ~l~l~~~  212 (476)
T PLN00028        206 LLHIIMG  212 (476)
T ss_pred             HHHHHHH
Confidence            8776654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1e-13  Score=117.75  Aligned_cols=149  Identities=11%  Similarity=0.071  Sum_probs=123.1

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      +..-.|.+.++.++|. +.....+...+.+.++.++.|.++||.+.|..+-.++++++++.+.+-+     ..+-....+
T Consensus        48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf-----s~s~~~~~~  122 (448)
T COG2271          48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF-----SPSLFLFAV  122 (448)
T ss_pred             HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh-----hhHHHHHHH
Confidence            3455788888888988 7788999999999999999999999999999999999999985555544     223344445


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTY--VTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +..+.+.+.+.|+.|. ...++.++|+++||+..++.+...++|+.+.+.+.  .....+.+||..|+.-+++.++..
T Consensus       123 l~~lng~fQg~Gwpp~-~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         123 LWVLNGWFQGMGWPPC-ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHhcCCCcHH-HHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            5556667777776554 45677999999999999999999999999999998  888888899999999998888776

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.45  E-value=3.8e-12  Score=109.98  Aligned_cols=147  Identities=15%  Similarity=-0.017  Sum_probs=111.6

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      +.+.+.+|.+.+++|.+. +..+..+...++..++++..|+++||+|||+++..+..+..+..+....      .++...
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~------a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL------YPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH------CcchHH
Confidence            556788999999999998 7788889999999999999999999999999999999999885554444      123333


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHH
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-GLHGTLFIYSFITG  163 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~  163 (226)
                      +.....+.+.......+....++.|.+| ++|+++.+........|..+++.+.+.+.++. +||..+.+++....
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~  174 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV  174 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3333333322222233445567888887 77999999999988899999999988888875 89987766555433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.45  E-value=1.2e-12  Score=115.17  Aligned_cols=150  Identities=9%  Similarity=0.035  Sum_probs=100.6

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+..|.+.++ |++. +..+..+...++..+++++.|+++||+|||++++.+..+..+..+.... ... ...+...+..
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~  125 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF-VPW-ATSSIAVMFV  125 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHh-hhc-ccccHHHHHH
Confidence            4567777777 8887 6778888999999999999999999999999999888887774433332 100 1112222222


Q ss_pred             H-HHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         92 F-CICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFL-VTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      . .+.+.+.+. ..+.....+.|++|+++|+++.++.+....+++.+ ++..........+||+.|++.+.+..+..
T Consensus       126 ~~~l~gi~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        126 LLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHHHHhc-cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            2 222233332 22333456779999999999999988888887654 44332233334489999888777666654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=7.3e-13  Score=115.48  Aligned_cols=150  Identities=17%  Similarity=0.055  Sum_probs=102.8

Q ss_pred             cccHHHHHhhcCCC--------c-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294         13 RPYLVEIFQTFGVP--------L-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        13 ~~~~~~~~~~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ....|.+..+++.+        . +..+..+...++..+++++.|+++||+|||+.++.+..+..+..+.... . . ..
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~-~-~~  124 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL-A-A-FA  124 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHH-h-c-cc
Confidence            33455555555554        4 5678888999999999999999999999999999888887773333222 0 0 11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHhhchhhHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTY---VTSITWFGLHGTLFIYSF  160 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~  160 (226)
                      .+...+.....+.+.......+....+++|.+|+++|+++.++.+....+|..+++.+.   ....+..+||+.|++.+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~  204 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI  204 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence            22112222222222222223355667899999999999999999999999999999887   444466789998888555


Q ss_pred             HHHHh
Q psy10294        161 ITGIG  165 (226)
Q Consensus       161 ~~~i~  165 (226)
                      ...+.
T Consensus       205 ~~~~~  209 (481)
T TIGR00879       205 PAGLL  209 (481)
T ss_pred             HHHHH
Confidence            44444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.45  E-value=2.9e-12  Score=113.85  Aligned_cols=146  Identities=16%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             ccHHHHHhhcCCCc-h-HHHH-----HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294         14 PYLVEIFQTFGVPL-K-SEWV-----LVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus        14 ~~~~~~~~~~g~~~-~-~~~~-----~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +..|.+.++++.+. + ..+.     .....++..+|++++|+++||+|||+++.++.++..+..+....      .++.
T Consensus        37 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~------~~~~  110 (490)
T PRK10642         37 FVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL------IPSY  110 (490)
T ss_pred             HHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh------cccH
Confidence            44566666664332 2 1221     24556778899999999999999999999999998885444444      1222


Q ss_pred             H--------HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------Hhhc
Q psy10294         87 I--------PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------TWFG  150 (226)
Q Consensus        87 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g  150 (226)
                      .        .+....++.+....+..+....+++|++|+++|++..++......+|..+++.+...+.        ..+|
T Consensus       111 ~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g  190 (490)
T PRK10642        111 ATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG  190 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc
Confidence            1        13333333333333344566779999999999999999988777777776665544332        3579


Q ss_pred             hhhHHHHHHHHHHHh
Q psy10294        151 LHGTLFIYSFITGIG  165 (226)
Q Consensus       151 ~~~~~~~~~~~~~i~  165 (226)
                      ||+.|++.+.+.++.
T Consensus       191 WR~~f~i~~~~~l~~  205 (490)
T PRK10642        191 WRIPFFIALPLGIIG  205 (490)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998866544443

>KOG0252|consensus

Probab=99.44  E-value=1e-13  Score=118.72  Aligned_cols=180  Identities=17%  Similarity=0.250  Sum_probs=131.9

Q ss_pred             ccccccceecccHHHHHhhcCCCc-hHHH---------HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHH
Q psy10294          4 GFNSSFVSMRPYLVEIFQTFGVPL-KSEW---------VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA   73 (226)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~---------~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~   73 (226)
                      ..-..+|....+...++++.|+.. +...         ...+.....++|..+...++|+.|||+..+.+.+++.++.+.
T Consensus       315 llDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~  394 (538)
T KOG0252|consen  315 LLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFV  394 (538)
T ss_pred             hhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHH
Confidence            344567778888889998877654 2211         122233333456667778999999999999999999884444


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----h
Q psy10294         74 LAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT-----W  148 (226)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  148 (226)
                      +.. ..+........+++..+...+...|++....++.+|.||++.|+++.|++...+..|++++...+.++.+     .
T Consensus       395 ~~~-~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~  473 (538)
T KOG0252|consen  395 IAG-PYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPN  473 (538)
T ss_pred             HcC-CcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcc
Confidence            333 2221112223344445555667778888888899999999999999999999999999999999999988     7


Q ss_pred             hchhhHHHHHHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294        149 FGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       149 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~  199 (226)
                      .+.+.++++.+...+++.              + ..+++||  +|+.||++++
T Consensus       474 ~g~~~v~~i~~~~~~~gi--------------~-~T~l~pEtk~~~leei~~e  511 (538)
T KOG0252|consen  474 IGVRNVFIILAGCMLLGI--------------L-FTLLIPETKGKSLEEISNE  511 (538)
T ss_pred             ccchHHHHHHHHHHHHhH--------------h-eeEEeecccccCHHHhcCh
Confidence            788999999999988885              4 4456789  7788887655

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.44  E-value=1.1e-12  Score=114.93  Aligned_cols=149  Identities=9%  Similarity=0.019  Sum_probs=102.8

Q ss_pred             ccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy10294         14 PYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        14 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      ...|.+.+ .|++. +..+......++..++.++.|+++||+|||+.+..+.++..+..+.... . .....+...+...
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~  124 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGF-V-PWATSSIAIMFVL  124 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhc-c-ccccchHHHHHHH
Confidence            34565554 58887 6778888999999999999999999999999988887777664333222 0 0001222222222


Q ss_pred             H-HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHhh
Q psy10294         93 C-ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI-TWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        93 ~-~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~  166 (226)
                      . ..+.+.+. ..+.....+.|.+|+++|+++.++.+....+++.+++.+.+... .+.+||..|++.+.+..+..
T Consensus       125 ~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~  199 (438)
T TIGR00712       125 LFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVA  199 (438)
T ss_pred             HHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            2 22222222 22334457789999999999999999999999988887766544 35689999988887776654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.44  E-value=4.2e-12  Score=110.98  Aligned_cols=150  Identities=12%  Similarity=-0.040  Sum_probs=95.6

Q ss_pred             cccHHHHHhhcC---CCc-hHHH---HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294         13 RPYLVEIFQTFG---VPL-KSEW---VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus        13 ~~~~~~~~~~~g---~~~-~~~~---~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      .+..|.+.++++   .+. +...   ......++..++++++|+++||+|||+++..+.....+..+.... .   ++..
T Consensus        42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~---~~~~  117 (432)
T PRK10406         42 SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC-L---PGYE  117 (432)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh-c---CCch
Confidence            344666777764   332 2112   223444555699999999999999999999999988884444333 0   1111


Q ss_pred             ------HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------Hhhch
Q psy10294         86 ------WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------TWFGL  151 (226)
Q Consensus        86 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~  151 (226)
                            ...+...+...+....+..+....+++|.+|+++|++..++.+.....|..+++.+...+.        ..+||
T Consensus       118 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        118 TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence                  1223333333333323344667789999999999999999887766666666665543332        25799


Q ss_pred             hhHHHHHHHHHHHhh
Q psy10294        152 HGTLFIYSFITGIGF  166 (226)
Q Consensus       152 ~~~~~~~~~~~~i~~  166 (226)
                      |..|++.++..++..
T Consensus       198 r~~F~i~~~~~ll~~  212 (432)
T PRK10406        198 RIPFALGAVLAVVAL  212 (432)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999987666655543

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=7.4e-12  Score=108.06  Aligned_cols=150  Identities=7%  Similarity=0.048  Sum_probs=109.5

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+...+|.+.+++|++. +..+..+...++..++.++.|++.||+|||+++..+..+..+.......     .++.+...
T Consensus        25 ~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~-----~~~~~~~~   99 (394)
T PRK03699         25 VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF-----SHSLALFS   99 (394)
T ss_pred             HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----cchHHHHH
Confidence            45566889999999987 6677888889999999999999999999999998888777664433333     12222222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT-WFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~  166 (226)
                      ......+.+.+. ..+....++.|.+|+++|+++.+..+....+++.+++.+.+.+.+ ..+||+.+...+.+.++..
T Consensus       100 ~~~~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~  176 (394)
T PRK03699        100 IAMFVLGVVSGI-TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF  176 (394)
T ss_pred             HHHHHHHHhhHh-hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            222222222222 234455678899999999999998888888888888888877654 5799999988777665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.42  E-value=5e-12  Score=111.87  Aligned_cols=154  Identities=12%  Similarity=0.051  Sum_probs=110.2

Q ss_pred             cccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          7 SSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .++|.+..++|.++++ +|++. +.............++.+++|+++||+ |||+.++++.++..+..+.... .   ..
T Consensus        23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~-~---~~   98 (493)
T PRK15462         23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA-S---EI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH-h---hc
Confidence            3567777888988765 78887 666777777788889999999999999 9999999888887773332222 0   11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVR--IRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ..............+.+. ..+....+++|.+|++  .|.++.++.++..++|+.++|.+.+++.++.||+..|...++.
T Consensus        99 ~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig  177 (493)
T PRK15462         99 HPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG  177 (493)
T ss_pred             chhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            111122212222222221 2344557889999985  7999999999999999999999999999999999988876544


Q ss_pred             HHHh
Q psy10294        162 TGIG  165 (226)
Q Consensus       162 ~~i~  165 (226)
                      ..++
T Consensus       178 m~l~  181 (493)
T PRK15462        178 MIAG  181 (493)
T ss_pred             HHHH
Confidence            4333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=6.8e-13  Score=117.13  Aligned_cols=154  Identities=9%  Similarity=0.003  Sum_probs=109.0

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      +....|.+.+++|.+. +.++..+...++..++.++.|+++||+|||+++..+.++..+..+.... ......++...+.
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  126 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA-SLGSGSVSLGLMI  126 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH-HHhcccchHHHHH
Confidence            3445788899999988 7788888999999999999999999999999998887777663322221 0000122333333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF---GLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~i~~  166 (226)
                      ......+.......+....+++|++|+++|+++.|+......+|..+++.+..++.+.+   +|+..|.+.+.+.++..
T Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~  205 (467)
T PRK09556        127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG  205 (467)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence            33333333222233556678999999999999999999988999999888877666653   58877777666655544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.41  E-value=2.7e-12  Score=113.04  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=107.9

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+..+.|.+.+++|.+. +..+..+...+...++.++.|+++||+|||+.++.+.++..+..+....     ..+.+...
T Consensus        37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~-----~~~~~~l~  111 (455)
T TIGR00892        37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF-----SSNVIELY  111 (455)
T ss_pred             chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH-----hhhHHHHH
Confidence            45667889999999987 6777777777788889999999999999999999888777663333323     11112221


Q ss_pred             HHHHHHHHHHhccc-cchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGI-LALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+ .+.+.+. .+....++.|++| ++|+++.++.+....++..+++.+.+.+.+.+|||+.|++.+++.++..
T Consensus       112 ~~~~~l-~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~  187 (455)
T TIGR00892       112 LTAGFI-TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC  187 (455)
T ss_pred             HHHHHH-HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            112122 1222222 2333456778886 7899999999999999999999999999999999999999888766543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.41  E-value=4.4e-12  Score=92.36  Aligned_cols=126  Identities=18%  Similarity=0.160  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhcc
Q psy10294         35 LTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEI  114 (226)
Q Consensus        35 ~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  114 (226)
                      ...++..++.+..+++.||+|||+.+..+.....+..+....     ..+.+.........+.. .....+..+.+..|.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----SSNITVLIIARFLQGFG-AAFALVAGAALIADI   79 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence            345677889999999999999999998887777664333333     12222222222222222 222345666788999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        115 FPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       115 ~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +|+++|+++.++.+....++..+++.+.+.+.+..+|+..+++.+....+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF  131 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888899888887777666654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=3.7e-12  Score=117.66  Aligned_cols=129  Identities=17%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      ....+..++.+++.+++++++||+|||++++.+.++.+++.+....     .......+...++. .+...+..+..+.+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~-----~~s~~~ll~~~~l~-g~~~~~~~~~~~a~  672 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF-----GNSESAMIALLCLF-GGLSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            3455667888999999999999999999999888888774444333     12222222222222 23233344667789


Q ss_pred             hhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        111 MSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ++|++|++.|++++|+.+..+++|++++|.+.+.+.+. +...++++.+++.+++.
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~  727 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG  727 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887765 34456666666665554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.40  E-value=9.2e-12  Score=110.68  Aligned_cols=149  Identities=11%  Similarity=0.023  Sum_probs=106.6

Q ss_pred             cccceecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          7 SSFVSMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .++|.+..+++.+.+ ++|.+. +..+.............+++|+++|| +|||++++++.++..+..+.... .   ..
T Consensus        28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~-~---~~  103 (489)
T PRK10207         28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM-S---LL  103 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH-h---cc
Confidence            455667777777765 588887 56677777776777778899999999 99999999999999884433333 0   11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVR--IRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF  160 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  160 (226)
                      ............ +.......+....++.|.+|++  +|+.+.++.+...++|..+++.+.+++.++.|||+.|++.++
T Consensus       104 ~~~ll~~~~~l~-~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        104 KPDLIFIALGTI-AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             chhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            112121222222 2222223455667899999987  457789999999999999999999999999999998887543

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=4.2e-12  Score=109.95  Aligned_cols=146  Identities=15%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ....+.|.+.+++|.+. +..+..+...+...+++++.|++.||+|||+.+..+..+..+.......  ......++..+
T Consensus        31 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~l  108 (402)
T TIGR00897        31 LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIV--FGLGHANYPLI  108 (402)
T ss_pred             hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH--HhccCccHHHH
Confidence            34557788888999987 7788888999999999999999999999999999988887773322211  00011223333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhhHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVC-FLVTKTYVTSITWFGLHGTLFIY  158 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~  158 (226)
                      .....+.+.......+.....+.|.+|+++|+++.|+.+....++. ..++.+.+.+.+.+||+..++..
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~  178 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA  178 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            3333322211111223334567788999999999999999988886 57788777777778865544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.38  E-value=3.7e-12  Score=112.86  Aligned_cols=146  Identities=18%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             ecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         12 MRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        12 ~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ...++|.+.+ ++|.+. +..+..+...++..++.++.++++||+|||+.+..+..+..+..+....  .  ........
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~  369 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA--I--GGANVWVL  369 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--c--cccHHHHH
Confidence            3457888885 788887 6677888888999999999999999999999988776655543222222  0  11222222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ........+.+.+..+....+++|.+|++.|+++.++.+....+++.++|.+.+.+.+++|++..+...+..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        370 GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            222222223333444555668889999999999999999999999999999999999999988776554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.37  E-value=1.3e-11  Score=104.43  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=106.3

Q ss_pred             ccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy10294         14 PYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        14 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      .+.+.+.++.+.+. +.........+...++.++.+++.||+|||+.+..+..+..+....... . + ...........
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~  302 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF-I-P-MLNDVLFLATV  302 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-c-c-cchhHHHHHHH
Confidence            44556667778776 4566777888889999999999999999999988877776663333322 0 0 11111121222


Q ss_pred             HHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         93 CICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .......+ ...+....+++|.+|+++|+++.|+.+....++..+++.+.+.+.++.||+..+.+.+.+.++..
T Consensus       303 ~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       303 ALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            22222222 22234456788999999999999999999999999999999999999999988888777766653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.37  E-value=1.5e-11  Score=108.98  Aligned_cols=153  Identities=13%  Similarity=0.036  Sum_probs=112.6

Q ss_pred             cccceecccHHHHHhh---cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10294          7 SSFVSMRPYLVEIFQT---FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSMNL   81 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~   81 (226)
                      .+++.+..++|.++++   +|++. +..+..........++++++|+++|| +|||+++.++..+..+..+....     
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~-----   98 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM-----   98 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-----
Confidence            4556777888888765   78887 77788888899999999999999999 89999999999888774433333     


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRI---RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIY  158 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  158 (226)
                      ....+.......+.+.+.+ ...+....+++|++|+++   |+++.++.+...++|..+++.+.+++.++.||+..|...
T Consensus        99 ~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924        99 SIYPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             cccHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            1122222222222222221 234556678889998754   888999999999999999999999999989999988876


Q ss_pred             HHHHHHh
Q psy10294        159 SFITGIG  165 (226)
Q Consensus       159 ~~~~~i~  165 (226)
                      +....+.
T Consensus       178 ~~~~~~~  184 (475)
T TIGR00924       178 AVGMVIG  184 (475)
T ss_pred             HHHHHHH
Confidence            6544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=1.9e-11  Score=105.26  Aligned_cols=154  Identities=7%  Similarity=-0.039  Sum_probs=105.3

Q ss_pred             eecccHHHH-HhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC--CCchH
Q psy10294         11 SMRPYLVEI-FQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL--HWPGW   86 (226)
Q Consensus        11 ~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~   86 (226)
                      ...+.+|.+ .+++|.|. +.++..+...+...+++++.|+++||+|||+.++.+.+.+.+..+.........  ...+.
T Consensus        33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (392)
T PRK12382         33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF  112 (392)
T ss_pred             HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence            344566654 46789988 778888899999999999999999999999999988877665322211100000  01222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      ..+.....+.+.......+....++.|.+|+++|+++.++.......+..+++.+.+.+.+++||+..+.+......+
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  190 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLL  190 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            333333332222222223444457789999999999999999888889999999999888888998766554444333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.37  E-value=2.5e-11  Score=103.13  Aligned_cols=151  Identities=12%  Similarity=-0.032  Sum_probs=101.2

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-----CChHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-----GKRPMSL-WSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-----Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ...+-.|.+.+++|++. +..+.... .+...+ .+++|+++||+     |||+.++ .+.+...+......+ . . ..
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~-~-~-~~   80 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF-L-V-PS   80 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc-C-C-cc
Confidence            34556889999999997 55555433 333333 88999999998     8998754 445444443333322 1 1 11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------hhhHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG--------LHGTL  155 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~  155 (226)
                      .....+...............+....+++|++|+++|+++.++......+|..+++.+...+.++.+        ||..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            2222222222222222223345556788999999999999999999999999999999988888888        99999


Q ss_pred             HHHHHHHHHhh
Q psy10294        156 FIYSFITGIGF  166 (226)
Q Consensus       156 ~~~~~~~~i~~  166 (226)
                      ++.++..++..
T Consensus       161 ~i~ai~~l~~~  171 (356)
T TIGR00901       161 FWTALLILPGL  171 (356)
T ss_pred             HHHHHHHHHHH
Confidence            88877666654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.36  E-value=1.5e-11  Score=106.11  Aligned_cols=155  Identities=11%  Similarity=0.062  Sum_probs=107.6

Q ss_pred             eecccHHHH-HhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc--hH
Q psy10294         11 SMRPYLVEI-FQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP--GW   86 (226)
Q Consensus        11 ~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~   86 (226)
                      ...+.+|.+ .+++|.+. +..+..+...+...+++++.|+++||+|||++++.+..+..+...............  ..
T Consensus        33 ~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (399)
T PRK05122         33 LPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL  112 (399)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHH
Confidence            345667765 46789887 778888999999999999999999999999999998887766322221101111111  12


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ..+.......+.......+....+..|..|+++|+++.++......++..+++.+.+.+.+++||+..+++...+..+.
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            2222222222222222334455677899999999999999888888888999999999989999998777665555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.36  E-value=4.1e-12  Score=112.18  Aligned_cols=153  Identities=12%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +....|.|.++++ +|++. +..+......++..++.+++|+++||+|||+..........+.......  .. ..+...
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~~-~~~~~~  351 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY--QH-ATSEYM  351 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH--Hh-cCcHHH
Confidence            3456789988754 78887 6667777888889999999999999999998766544433331111111  00 122222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHH------------hhchhhH
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSIT------------WFGLHGT  154 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~g~~~~  154 (226)
                      ........ +....+..........|.+|++.||++.|+.+..+.+ +..++|.+.+.+.+            ..||+..
T Consensus       352 ~~~~~~~~-G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~  430 (467)
T PRK09556        352 YLASLFAL-GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT  430 (467)
T ss_pred             HHHHHHHH-HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH
Confidence            22222222 2122222222235667999999999999999999887 66899999999988            5789888


Q ss_pred             HHHHHHHHHHhh
Q psy10294        155 LFIYSFITGIGF  166 (226)
Q Consensus       155 ~~~~~~~~~i~~  166 (226)
                      |++..+...++.
T Consensus       431 f~~~~~~~~~~~  442 (467)
T PRK09556        431 FAALDIAAIGCI  442 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            887766666654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.36  E-value=8.1e-12  Score=108.01  Aligned_cols=139  Identities=11%  Similarity=0.002  Sum_probs=102.9

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ....+.+.++++.+. ...+......+...+..++.|+++||+|||++++++..+..+..+....      ..+.   ..
T Consensus        23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~------~~~~---~~   93 (393)
T PRK11195         23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF------GIHP---LL   93 (393)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH------HHHH---HH
Confidence            344556677888776 5678888888999999999999999999999999999888773333222      0111   12


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ...+.+.......|....++.|++|+++|+++.++......++..++|.+.+.+.++. |+..+.+.+..
T Consensus        94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~  162 (393)
T PRK11195         94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALI  162 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            2222333333455777789999999999999999999999999999999999988753 66555555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.35  E-value=2.6e-11  Score=105.53  Aligned_cols=151  Identities=8%  Similarity=-0.037  Sum_probs=109.0

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+..|.+.+++|.+. +..+..+...++..++++..+++.||+|||+.+..+..+.++.........   ..+++..+.
T Consensus        22 ~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~---~~~~~~~~l   98 (410)
T TIGR00885        22 TNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA---EIMNYTLFL   98 (410)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---hhccHHHHH
Confidence            3477889989999998 778889999999999999999999999999999999988887433322200   112233222


Q ss_pred             HHH-HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q psy10294         91 IFC-ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT----------------------  147 (226)
Q Consensus        91 ~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  147 (226)
                      ... ..+.+.+. ..+....++.|..|+++|++..++.+....+|..+++.+.+.+..                      
T Consensus        99 ~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  177 (410)
T TIGR00885        99 VGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAI  177 (410)
T ss_pred             HHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHH
Confidence            222 22222222 223344577789999999999999999999999999988776642                      


Q ss_pred             ----hhchhhHHHHHHHHHHHhh
Q psy10294        148 ----WFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       148 ----~~g~~~~~~~~~~~~~i~~  166 (226)
                          ..+||.+|++.+.+..+..
T Consensus       178 ~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       178 KHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence                2469999988887666543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.34  E-value=1.5e-11  Score=106.90  Aligned_cols=150  Identities=13%  Similarity=-0.014  Sum_probs=106.1

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ....+.|.+.++ .|.+. ...+......++..++.++.+++.||.++|+.+..+..+..+..+....     ....+..
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~  315 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----MPMWILA  315 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----cchHHHH
Confidence            345677888887 78876 5667777888889999999999999988887777776665553322222     1122222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .......+.+.+ ...+....++.|..|++.|+++.|+.+....++..+++.+.+.+.+..|.+..++..+....+..
T Consensus       316 ~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        316 VLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence            222222222221 12244556888999999999999999999999999999999999999998877777776655544

>TIGR00896 CynX cyanate transporter

Probab=99.34  E-value=8.2e-11  Score=99.94  Aligned_cols=150  Identities=12%  Similarity=0.021  Sum_probs=106.2

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +..+..+.+|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+.+...+..... .     ..+.+
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~~~~~   88 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----APGTA   88 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----hccHH
Confidence            44566788999999999998 77888999999999999999999999999999998877665533222 2     12222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF--GLHGTLFIYSFITGI  164 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~i  164 (226)
                      ..+......+.+.+. ..+....++.|.+| ++|+++.++.+....++..+++.+.+.+.++.  +||..+...+....+
T Consensus        89 ~l~~~~~~~g~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        89 LLFAGTALIGVGIAI-INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHHH-HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            222222222222222 22334456778886 57999999999998999999998888777664  388777766654443


Q ss_pred             h
Q psy10294        165 G  165 (226)
Q Consensus       165 ~  165 (226)
                      .
T Consensus       167 ~  167 (355)
T TIGR00896       167 A  167 (355)
T ss_pred             H
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.34  E-value=7.8e-12  Score=108.60  Aligned_cols=156  Identities=13%  Similarity=0.021  Sum_probs=108.6

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      .......|.+.++.+.+. +.++......+...+++++.|+++||+|||+.+..+..+..+........... ..++...
T Consensus        34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  112 (417)
T PRK10489         34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL-PEPSLLA  112 (417)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc-CCCcHHH
Confidence            344566888888887776 67788889999999999999999999999999988777666522222110111 1222222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.......+.......+....++.|..|+++|+++.++......++..+++.+.+.+.+..+|++.++..+...++..
T Consensus       113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~  190 (417)
T PRK10489        113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL  190 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            222222222211112233445788999999999999999999999999999999999888899888877665555443

>KOG0569|consensus

Probab=99.34  E-value=6e-12  Score=110.38  Aligned_cols=132  Identities=15%  Similarity=0.084  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHh
Q psy10294         32 VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLM  111 (226)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (226)
                      ..++..++.++|++..++++||+|||..++++.+...+..+....+.   ..+....+..-.++.+...........+|.
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~---~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK---SAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46688889999999999999999999999888888777333333211   122333333333333322222234566899


Q ss_pred             hccCCcchhhhHHHHHHHHHHHHHHHHHHH-HHHHHH-hhchhhHHHHHHHHHHHhh
Q psy10294        112 SEIFPVRIRGVACGICAAINSIVCFLVTKT-YVTSIT-WFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       112 ~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~~~~~~~~~i~~  166 (226)
                      .|+.|.+.||....+...+..+|..++..+ .+.+.+ ...|++.+....+...+..
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l  198 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL  198 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence            999999999999988888888888887443 333442 3348776666666555553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.33  E-value=3.1e-11  Score=100.98  Aligned_cols=154  Identities=19%  Similarity=0.190  Sum_probs=117.4

Q ss_pred             cccceecccHHHHHhhc-CCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          7 SSFVSMRPYLVEIFQTF-GVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRP-MSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ........+.|.+.++. |.+. +.........++..++.++.+++.||+|||+ .+..+..+..+.......     ..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~  263 (352)
T cd06174         189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL-----AP  263 (352)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----hc
Confidence            34455567788888775 7776 6677888889999999999999999999999 888887777774433333     12


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITG  163 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  163 (226)
                      +.+......... +.......+....+..|..|+++|++..++.+....++..+++.+.+.+.+..+|+..+.+.+.+..
T Consensus       264 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         264 SLALLLVALLLL-GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             cHHHHHHHHHHH-HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            222333333333 3333334567778899999999999999999999999999999999999988899988888888877


Q ss_pred             Hhh
Q psy10294        164 IGF  166 (226)
Q Consensus       164 i~~  166 (226)
                      +..
T Consensus       343 i~~  345 (352)
T cd06174         343 LAA  345 (352)
T ss_pred             HHH
Confidence            765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.33  E-value=3.9e-11  Score=105.19  Aligned_cols=125  Identities=12%  Similarity=0.043  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH--------HHHHHHHHHHHHhccccch
Q psy10294         35 LTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI--------PLTIFCICFWISGYGILAL  106 (226)
Q Consensus        35 ~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  106 (226)
                      ...++..+++++.|+++||+|||+++..+..+..+.......      .++..        .+...+.+.+....+..+.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  145 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGL------LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGG  145 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Confidence            344556788999999999999999999988888874444333      11111        2333333333323233355


Q ss_pred             hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhhHHHHHHHHHHHh
Q psy10294        107 PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------TWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       107 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~i~  165 (226)
                      ...+++|.+|+++|++..+.......+|..++..+...+.        ..+|||..|++.++..++.
T Consensus       146 ~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~  212 (438)
T PRK09952        146 AALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA  212 (438)
T ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH
Confidence            5679999999999999999888888888877766655543        2579999888776655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.32  E-value=4e-11  Score=104.21  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      +..++|.+.++.|.+. ..........++..++.++.+++.||+|||+.+..+.++..+....... .   .........
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~  325 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR-I---PQDNYLLLG  325 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-H---ccccHHHHH
Confidence            4557788888888876 4455566777888999999999999999999988887766553332222 1   112222121


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHG  153 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  153 (226)
                      ...........+..+..+.++.|.+|++.|+++.|+.+....+++.++|.+.+.+.+++|+..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        326 ACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA  388 (426)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence            111111122223334555678899999999999999999999999999999999999888643

>KOG0253|consensus

Probab=99.31  E-value=1.6e-11  Score=103.01  Aligned_cols=129  Identities=14%  Similarity=0.236  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      ..-..+.....++|.++.+++.||+|||+.+..+.+++.++.+....|     ..........+....+...++ .+.|+
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~f-qvaYv  457 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAF-QVAYV  457 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchh-eEEEE
Confidence            445667788889999999999999999999999999999987777773     344444444444444444444 46788


Q ss_pred             HhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       110 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      |..|++|++.|+++.|.++..+++|+++.|.+.  +.....-..+..+++...++..
T Consensus       458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilag  512 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAG  512 (528)
T ss_pred             ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHH
Confidence            999999999999999999999999999999987  3332233446667777766665

>PRK15075 citrate-proton symporter; Provisional

Probab=99.31  E-value=8.1e-11  Score=102.94  Aligned_cols=145  Identities=14%  Similarity=0.027  Sum_probs=92.8

Q ss_pred             eecccHHHHHhhcCCCc-hHH-HHHHHH-----HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSE-WVLVLT-----GVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~-~~~~~~-----~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .+.+..|.+.++++.+. +.. +..+..     .+...+++++.|+++||+|||+.++.+..+..+.......     ..
T Consensus        33 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~-----~~  107 (434)
T PRK15075         33 LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF-----VP  107 (434)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh-----CC
Confidence            45677889999988766 432 222211     2222468899999999999999999998887774333333     11


Q ss_pred             chHH-------HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHh
Q psy10294         84 PGWI-------PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTS--------ITW  148 (226)
Q Consensus        84 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  148 (226)
                      +...       .+...+++.+.......+....+++|++|+++|+++.++......++..+++.+...+        .+.
T Consensus       108 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~  187 (434)
T PRK15075        108 GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE  187 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc
Confidence            1110       1222222222222222344557899999999999999998887777776666655544        356


Q ss_pred             hchhhHHHHHHH
Q psy10294        149 FGLHGTLFIYSF  160 (226)
Q Consensus       149 ~g~~~~~~~~~~  160 (226)
                      +|||++|++...
T Consensus       188 ~gWr~~f~~~~~  199 (434)
T PRK15075        188 WGWRIPFLIGCL  199 (434)
T ss_pred             cchHHHHHHHHH
Confidence            799998876443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.29  E-value=2.8e-11  Score=105.84  Aligned_cols=143  Identities=13%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             cccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      .+.+.+..|.|.++++ .|.+. +..+......+...++.++.|+++||+|||+.+..+.....+....... ... ...
T Consensus       252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~-~~~  329 (434)
T PRK15075        252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS-WLV-AAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHH-cCC
Confidence            3445667889998876 68886 5566677778888999999999999999999887765544332211111 010 112


Q ss_pred             hHHHH-HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchh
Q psy10294         85 GWIPL-TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITWFGLH  152 (226)
Q Consensus        85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~  152 (226)
                      ..... ........+.+ ...+..+.+.+|.+|++.|+++.++.+..+.. ++.++|.+.+.+.++.|++
T Consensus       330 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            22111 11111222222 22344456788999999999999997666554 5788999999999988853

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.28  E-value=1.5e-10  Score=103.16  Aligned_cols=153  Identities=12%  Similarity=-0.005  Sum_probs=100.9

Q ss_pred             cccceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          7 SSFVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .+++.+..++|.+. +++|++. +..+.............+++|+++|| +|||+.++.+..+..+....... .   ..
T Consensus        35 ~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~-~---~~  110 (500)
T PRK09584         35 FGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW-S---GH  110 (500)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-h---cc
Confidence            34556667777777 5689887 55555544444444556789999999 59999999998887763333323 0   11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRI--RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ............+.+.+ ...+....+.+|++|++.  |+.+.++.+...++|..++|.+.+++.+++|||+.|.+.++.
T Consensus       111 ~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~  189 (500)
T PRK09584        111 DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG  189 (500)
T ss_pred             cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            11112222222222222 233455568899998643  456788888999999999999999999999999998876654


Q ss_pred             HHH
Q psy10294        162 TGI  164 (226)
Q Consensus       162 ~~i  164 (226)
                      ..+
T Consensus       190 ~~i  192 (500)
T PRK09584        190 MLI  192 (500)
T ss_pred             HHH
Confidence            333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.28  E-value=6.4e-11  Score=103.30  Aligned_cols=149  Identities=15%  Similarity=0.045  Sum_probs=100.1

Q ss_pred             ccHHHHHhhcCCCc---------hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy10294         14 PYLVEIFQTFGVPL---------KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus        14 ~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      .+.|.+.++.|.+.         .......+..+..+++.+..+++.||+|||+++..+.++..+....... .  ....
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~-~--~~~~  305 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY-G--DPEY  305 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-c--Ccch
Confidence            44555666655432         2245556677778888999999999999999999888877663222222 0  0111


Q ss_pred             -hHHHHH-HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHh------hchhhHH
Q psy10294         85 -GWIPLT-IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICA-AINSIVCFLVTKTYVTSITW------FGLHGTL  155 (226)
Q Consensus        85 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~g~~~~~  155 (226)
                       ....+. .....+...+ ...+....+++|.+|++.|+++.|+.+ ....++..++|.+.+.+.++      +||+..|
T Consensus       306 ~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f  384 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMW  384 (418)
T ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHH
Confidence             112122 2222222222 223445568899999999999999997 56788999999999999887      4588888


Q ss_pred             HHHHHHHHHhh
Q psy10294        156 FIYSFITGIGF  166 (226)
Q Consensus       156 ~~~~~~~~i~~  166 (226)
                      .+.+++..+..
T Consensus       385 ~~~~~~~~i~~  395 (418)
T TIGR00889       385 LFFAGYIAILA  395 (418)
T ss_pred             HHHHHHHHHHH
Confidence            88777777666

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2532|consensus

Probab=99.28  E-value=3.1e-11  Score=106.26  Aligned_cols=139  Identities=13%  Similarity=0.084  Sum_probs=111.0

Q ss_pred             hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH--HHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy10294         22 TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV--FTIALAICSMNLHWPGWIPLTIFCICFWI   98 (226)
Q Consensus        22 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (226)
                      +++++. +..+..+....+.+++.+.++++.||+|-|+++.++.++.++  ...+...     ....+ .+...+++.+.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa-----~~~~~-~~~~~R~lqGl  140 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA-----SIGFY-LLLVLRFLQGL  140 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-----Hhcch-hhHHHHHHhHH
Confidence            456666 677888899999999999999999999999999999999988  3334444     22223 34444444443


Q ss_pred             HhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHhh
Q psy10294         99 SGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW-FGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        99 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~  166 (226)
                      ......|....+.+.+.|+++|++..++...+..+|.++..++.+.+.+. +||+..|++.+.+..+..
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~  209 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF  209 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            33333466667888999999999999999999999999999999999988 999999999999988876

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.27  E-value=1.1e-10  Score=102.49  Aligned_cols=152  Identities=18%  Similarity=0.175  Sum_probs=102.0

Q ss_pred             cccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      .+..+.+.+ ++|++. +..+..++..+...+..+..|++.||+|.|+++.++..+..+..+.... ...+..+++..+.
T Consensus        54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~-a~~~~~~s~~~ll  132 (462)
T PRK15034         54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGI-AVQNPNTPFGIFI  132 (462)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-HHcccCCCHHHHH
Confidence            344555555 689988 6777888888888899889999999999999999988888774333332 1111123344444


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------hhchh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI-----T-------------WFGLH  152 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~g~~  152 (226)
                      ....+.+..+. ..+.....+++++|+++||++.|+....+++|..+.+.+.+.+.     +             ..+|+
T Consensus       133 i~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~  211 (462)
T PRK15034        133 VIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLA  211 (462)
T ss_pred             HHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence            44443333332 33445568899999999999999998777777776666655433     2             23366


Q ss_pred             hHHHHHHHHHHHhh
Q psy10294        153 GTLFIYSFITGIGF  166 (226)
Q Consensus       153 ~~~~~~~~~~~i~~  166 (226)
                      ...+++..+.++..
T Consensus       212 ~~~~~~~~~~iv~~  225 (462)
T PRK15034        212 NAAWIWVPLLAIAT  225 (462)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66667776665554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.27  E-value=3.9e-11  Score=105.02  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=99.3

Q ss_pred             eecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHH-HHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294         11 SMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMS-LWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus        11 ~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      .+..|+|.+++ +.|++. +.........++..++.++.|+++||+  ++|+.. ........+.......  .  ....
T Consensus       261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~--~--~~~~  336 (434)
T PRK11663        261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL--M--PFAS  336 (434)
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH--c--cccc
Confidence            34567888884 578887 566777788889999999999999999  333332 2222111111111111  1  1111


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ...........+....+........++|.+|++.|+++.|+.+....+++.++|.+.+++.++.||+..+...+.+.++.
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            21111112211222222222334567899999999999999999999999999999999999999998888887777666


Q ss_pred             h
Q psy10294        166 F  166 (226)
Q Consensus       166 ~  166 (226)
                      .
T Consensus       417 ~  417 (434)
T PRK11663        417 A  417 (434)
T ss_pred             H
Confidence            5

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.26  E-value=1.3e-10  Score=100.61  Aligned_cols=151  Identities=9%  Similarity=0.033  Sum_probs=104.9

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-----CChH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-----GKRP-MSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-----Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ....-+|.++++.|++. +..+.......  .+..+++|+++||+     |||+ .+..+..+..+....... . . ..
T Consensus        17 ~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~-~-~-~~   91 (402)
T PRK11902         17 LTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF-C-P-PH   91 (402)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh-c-C-cc
Confidence            34556889999999998 55655444443  58899999999999     8876 566666666554333333 1 1 11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW-FGLHGTLFIYSFIT  162 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~  162 (226)
                      .+...+...............+....++.|.+|+++|+++.++......++..+++.+...+.+. .|||..|++.+.+.
T Consensus        92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~  171 (402)
T PRK11902         92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLM  171 (402)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHH
Confidence            22222332222223333334566677899999999999999999998899999999888888875 59999998888776


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      .+..
T Consensus       172 l~~~  175 (402)
T PRK11902        172 LAGA  175 (402)
T ss_pred             HHHH
Confidence            6554

>PTZ00207 hypothetical protein; Provisional

Probab=99.26  E-value=1.2e-10  Score=104.87  Aligned_cols=155  Identities=10%  Similarity=0.053  Sum_probs=98.4

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      .|.+..+.|.+.+++|++. +..+..... .......+++|++.||+|||+++.++.+...+..+....+.......+..
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~  121 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence            4566788899999999987 545544432 23334566789999999999999999999888433333311100012233


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+.+...+.+.......+.......++|| ++||++.|+......+|+.+.+.+...+.. .+|+..+++.+.+..+..
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence            33333322222222222334456778887 789999999999999999865555554443 357777777777766655

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.26  E-value=8.5e-11  Score=101.34  Aligned_cols=149  Identities=14%  Similarity=0.188  Sum_probs=102.9

Q ss_pred             eecccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ....+.|.+.++.|.+ +.........++..++.++.+++.||+|||+.+..+..+..+.......     ..+.+....
T Consensus       234 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  307 (399)
T PRK05122        234 TIATFITLYYAARGWD-GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL-----APSPWMALI  307 (399)
T ss_pred             HHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----hccHHHHHH
Confidence            3445677777766653 3344556677778889999999999999999888777766653333333     122222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.+.+. ..+.......|..|++.|+++.++.+....++..+++.+.+.+.++.||+..++..+.+..+..
T Consensus       308 ~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  382 (399)
T PRK05122        308 GAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGL  382 (399)
T ss_pred             HHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            22222222222 2233345567889999999999999999999999999999999999999988888777666654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.25  E-value=6.8e-11  Score=101.65  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=101.4

Q ss_pred             ccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHH-HHHHHHHHHHHHHhhcCCC
Q psy10294          6 NSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWST-GICFVFTIALAICSMNLHW   83 (226)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~-~~~~i~~~~~~~~~~~~~~   83 (226)
                      +.+.....+++|.+.+++|.+. +.++..+...+...+++++.++++||+|||....-.. +...+.......     ..
T Consensus        17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~   91 (382)
T PRK11128         17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF-----GA   91 (382)
T ss_pred             HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-----hc
Confidence            4445667788899999999988 7788888999999999999999999999953221111 111111111111     11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITG  163 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  163 (226)
                      ++...+.......+.......+....+..++  .++|+++.+.....+.++..++|.+.+.+.+++|||..++..+....
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~  169 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA  169 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            2233322233322222333445555566555  45688888889999999999999999999999999998887665444


Q ss_pred             Hh
Q psy10294        164 IG  165 (226)
Q Consensus       164 i~  165 (226)
                      +.
T Consensus       170 ~~  171 (382)
T PRK11128        170 SM  171 (382)
T ss_pred             HH
Confidence            33

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.25  E-value=1.8e-10  Score=99.55  Aligned_cols=152  Identities=13%  Similarity=0.034  Sum_probs=103.1

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +.+....|.|.+.++.|.+. +.........++.+++.++.+++.||+|||+....+..+..+....... .   .....
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~  295 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-L---PLQLP  295 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-c---cchHH
Confidence            34456678899998888887 5677788889999999999999999999999888876666553322222 0   11111


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGI  164 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i  164 (226)
                      ...  ....+.+.+. ..+.......|.. |+++|++..|+.+..+.+++.++|.+.+++.++.| +...+.+......+
T Consensus       296 ~~~--~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (393)
T PRK09705        296 VLW--AMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG  372 (393)
T ss_pred             HHH--HHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            111  1122222222 2233444445666 46789999999999999999999999999999887 55555555555544


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       373 ~~  374 (393)
T PRK09705        373 LM  374 (393)
T ss_pred             HH
Confidence            44

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.25  E-value=1.1e-10  Score=100.75  Aligned_cols=136  Identities=14%  Similarity=0.077  Sum_probs=97.7

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      +....|.|.+.++.|.+. +.........++..++.++.+++.||+|||+.+..+.+...+.......     ....+..
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  311 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----APSFAGM  311 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----cCcHHHH
Confidence            344557888888888887 6667777888889999999999999999999887765555443322222     1222222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      . ......+....+..+..+.+.+|.+|+++|+++.|+.+....+++.++|.+.+.+.++.++
T Consensus       312 ~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  373 (406)
T PRK11551        312 L-LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRS  373 (406)
T ss_pred             H-HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCc
Confidence            2 2222222222234456667889999999999999999999999999999999998876543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.24  E-value=2.8e-10  Score=97.54  Aligned_cols=138  Identities=15%  Similarity=0.108  Sum_probs=97.4

Q ss_pred             cccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+.|.+.+ +.|.+. +..+......++..++.++.+++.||+|||+.+..+.....+..+.... .   ....+. +.
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~-~~  332 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA-I---GANVAV-LG  332 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH-h---CCchHH-HH
Confidence            345666664 578876 5667777888899999999999999999999988777665442222222 1   122222 22


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTL  155 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~  155 (226)
                      ...........+..+..+.+++|.+|++.|+++.|+.+....+++.++|.+.+.+.++.| |+..+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL  398 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            221222222333445566788999999999999999999999999999999999999988 65433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.23  E-value=1.6e-10  Score=100.89  Aligned_cols=135  Identities=7%  Similarity=-0.024  Sum_probs=103.1

Q ss_pred             cccHHHHHhhcCCCc-h-HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-K-SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      .+..|.+.+++|++. + .+.+......++.+..+++|+++||+|-|+++..+.+...+......+      ..+...+.
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f------a~Sl~~L~  119 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL------GTSVWHMQ  119 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            345677778899998 5 567888999999999999999999999999999999888884443333      12233333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTL  155 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  155 (226)
                      ...++.+....... ....++.+++|+++|+++.|+...+..+|.++++.+.+. ...+||+...
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence            33333333322222 566789999999999999999999999999999999998 5678998643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK12382 putative transporter; Provisional

Probab=99.23  E-value=1.7e-10  Score=99.28  Aligned_cols=150  Identities=16%  Similarity=0.138  Sum_probs=104.7

Q ss_pred             ceecccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ..+..+.|.++++.+.+ +.........++..++.+..+++.||+|||+.+..+..+..+.......     ..+.+...
T Consensus       233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  306 (392)
T PRK12382        233 AVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-----APTAWVAL  306 (392)
T ss_pred             hHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-----cccHHHHH
Confidence            34456677777776665 3344455566677889999999999999999988877766663333323     12222222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ......+.+.+. ..+.......|.+|+++|+++.|+.+....++..+++.+.+.+.++.||+..+...+.+.++..
T Consensus       307 ~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~  382 (392)
T PRK12382        307 AGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGI  382 (392)
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            222222222221 2344445677889999999999999999999999999999999999999998888877766654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=1.3e-10  Score=101.54  Aligned_cols=154  Identities=12%  Similarity=0.232  Sum_probs=90.5

Q ss_pred             ccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294          8 SFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      ..+.+..|+|.++++ .|.+. +......+..+...++.++.|+++||+|||+.+.++..+..+....... ........
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~  336 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS-ALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH-HHHcCCcH
Confidence            345567788988764 68876 4555566666777888889999999999999887766554332222211 11111122


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhh-HHHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITWFGLHG-TLFIYSFITG  163 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~  163 (226)
                      ...+..........+. ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+...+ +..|++. .++..+....
T Consensus       337 ~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        337 YAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence            2222212111111111 2234567889999999999999999987765 344566666644 5556433 3333333333


Q ss_pred             H
Q psy10294        164 I  164 (226)
Q Consensus       164 i  164 (226)
                      +
T Consensus       415 i  415 (432)
T PRK10406        415 V  415 (432)
T ss_pred             H
Confidence            3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.23  E-value=2.4e-10  Score=98.23  Aligned_cols=136  Identities=11%  Similarity=-0.013  Sum_probs=99.6

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +.....+++|.+.+++|.+. +.++..+...++..+++++.|+++||+|||+.+..+..+..+.......      .++.
T Consensus        21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~------~~~~   94 (381)
T PRK03633         21 AIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL------MVGF   94 (381)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccH
Confidence            34456788999999999987 7788999999999999999999999999999999888887773333333      1223


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF  149 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (226)
                      ..+.......+.......+.......|..|+++|+++.+.......+|..+++.+.+.+.+..
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            333333333222222223333345568889999999999999999999999999988776643

>KOG0254|consensus

Probab=99.22  E-value=1.3e-10  Score=103.98  Aligned_cols=130  Identities=20%  Similarity=0.184  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      .+..+...+++.+++++.|.++|++|||+.++.+.+...+..+....      ..+...+...+.+.+....+...+..+
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~------a~~~~~l~~GR~l~G~g~G~~~~~~pi  165 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL------APSWYQLIVGRILTGLGVGGASVLAPV  165 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhccchhhhhhcchh
Confidence            58889999999999999999999999999999999998884444343      123333333333222222223345668


Q ss_pred             HhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHhh
Q psy10294        110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW--FGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       110 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~i~~  166 (226)
                      |.+|+.|++.||...+..+....+|..++ .+.+....+  ++||..+.+..+.+.+..
T Consensus       166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~  223 (513)
T KOG0254|consen  166 YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILA  223 (513)
T ss_pred             hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888766666 444444443  489977777776666665

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.22  E-value=2.5e-10  Score=98.52  Aligned_cols=149  Identities=10%  Similarity=-0.023  Sum_probs=91.9

Q ss_pred             eecccHHHHH-hhcCCCc-hHHHHHHHHHH-HHHHHHHHHHHHhcccCChHHHHH-HHHHHHHHHHHHHHHhhcCCCchH
Q psy10294         11 SMRPYLVEIF-QTFGVPL-KSEWVLVLTGV-LAITGSLVSSLTVNKFGKRPMSLW-STGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus        11 ~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~-~~~~~~~~~~~l~d~~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      .+.+++|.+. +++|.+. +.++..+...+ ....+.+.+++ .||+|||+.++. +.+...+.......      ..+.
T Consensus        33 ~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~  105 (393)
T PRK15011         33 LQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW------NRNY  105 (393)
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH------hhHH
Confidence            3456666654 5689887 55665444444 45556666666 999999987554 44433332222222      1222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRG--VACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      ..+........+.+....+....+..|..|++.|.  ...++.+....++..+++.+.+.+.+++|||..|+..+...++
T Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~  185 (393)
T PRK15011        106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIV  185 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            22222222222333334455556677766666553  3346777888899999999999999999999999888777666


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       186 ~~  187 (393)
T PRK15011        186 CG  187 (393)
T ss_pred             HH
Confidence            55

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.22  E-value=2.3e-10  Score=100.60  Aligned_cols=153  Identities=16%  Similarity=0.187  Sum_probs=96.7

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHH-HHHHHHHHHHHHHHHhhcCCCc
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMSLW-STGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      +....|.|.++++ .|++. +.........+...++.++.|+++||+  |||....+ ...+..+.......   .....
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~---~~~~~  346 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL---NPAGN  346 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH---hcccC
Confidence            4566789999876 67876 556666777788889999999999999  55543322 11211111111111   10111


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhchhhHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFL-VTKTYVTSITWFGLHGTLFIYSFITG  163 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~  163 (226)
                      ...........+ ....+.......+..|.+|++.||++.|+.+....+++.+ +|.+.+.+.+++||+..|++......
T Consensus       347 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~  425 (452)
T PRK11273        347 PTVDMACMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI  425 (452)
T ss_pred             hHHHHHHHHHHH-HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHH
Confidence            111111111111 1111222223346779999999999999999888887665 78999999999999988887777666


Q ss_pred             Hhh
Q psy10294        164 IGF  166 (226)
Q Consensus       164 i~~  166 (226)
                      ++.
T Consensus       426 ~~~  428 (452)
T PRK11273        426 LAV  428 (452)
T ss_pred             HHH
Confidence            554

>PRK09952 shikimate transporter; Provisional

Probab=99.22  E-value=5.1e-10  Score=98.12  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=96.9

Q ss_pred             ccceecccHHHHHh-hcCCCch-HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294          8 SFVSMRPYLVEIFQ-TFGVPLK-SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      +.+....|.|.+.+ ++|.+.+ .........+...++.++.|+++||+|||+.+..+.++..+....... ........
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~  343 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFM-ALEAQSIF  343 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHcCChH
Confidence            44555667777765 4677652 223344556667788899999999999999988776655443222222 11111112


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhh--chhhHHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINS-IVCFLVTKTYVTSITWF--GLHGTLFIYSFIT  162 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~  162 (226)
                      ............+.+ ...+..+.+++|.+|++.|+++.++.+..+. +++.++|.+.+++.+..  +|+..+...++..
T Consensus       344 ~~~~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  422 (438)
T PRK09952        344 WIVFFSIMLANIAHD-MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC  422 (438)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            221211222122222 2234566789999999999999999776655 78899999999988754  3665555555554


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      ++..
T Consensus       423 ~i~~  426 (438)
T PRK09952        423 LISA  426 (438)
T ss_pred             HHHH
Confidence            4443

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=5.1e-10  Score=96.91  Aligned_cols=157  Identities=16%  Similarity=0.190  Sum_probs=102.9

Q ss_pred             cccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHH-HHHHHHHHHHHHHHHHhhcCCCc
Q psy10294          7 SSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSL-WSTGICFVFTIALAICSMNLHWP   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~~   84 (226)
                      .+.+....|.|.+.++.|.+. +.........++..++.+..|+++||+|||+... .+.....+.............+.
T Consensus       236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            344566778999998888887 5556667778889999999999999999988764 22222322212211100000112


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      .+.........+.+.+ +..+.. ...+|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+++.+++.++
T Consensus       316 ~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i  392 (402)
T TIGR00897       316 FAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV  392 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            2222222222222222 223332 35567655 58999999999999999999999999999999998888888777666


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       393 ~~  394 (402)
T TIGR00897       393 SA  394 (402)
T ss_pred             HH
Confidence            54

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.21  E-value=4.4e-11  Score=104.73  Aligned_cols=156  Identities=17%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +....|.|.++++ .|.+. +..+......+..+++.+++++++||+++|+....+......................+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            4566788988876 57776 566777788888999999999999999654322223222222111111101111111222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVC-FLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ........ +....+..........|.+|++.|+++.|+.+....+++ .++|.+.+.+.++.||...+.+......++.
T Consensus       348 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       348 DMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHH-HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHH
Confidence            11111111 111112222223456799999999999999998888775 6789999999999999888877777666655

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.21  E-value=1.5e-10  Score=102.92  Aligned_cols=131  Identities=12%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhccccchh
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP-GWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      .........+..+++.++.+++.||+|||+.+.++.++..+..+.... .   ... .+...........+. .+..+..
T Consensus       357 ~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~  431 (505)
T TIGR00898       357 IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-V---PVDLYFLRTALAVLGKFGI-TSAFQMV  431 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-c---CCCchHHHHHHHHHHHHHH-HHHHHHH
Confidence            344455667778889999999999999999999888877774433333 1   112 122222222222222 2233566


Q ss_pred             hHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        108 WMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       108 ~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.+.+|.+|++.|+++.|+.+....+++.++|.+.+ + ...++..++++++....+..
T Consensus       432 ~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~  488 (505)
T TIGR00898       432 YLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAG  488 (505)
T ss_pred             HHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999888 3 34455667777777666654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.21  E-value=2.1e-10  Score=97.73  Aligned_cols=152  Identities=14%  Similarity=0.015  Sum_probs=93.7

Q ss_pred             ceecccHHHHHhhcCC--Cc-hHHHHHH-----HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10294         10 VSMRPYLVEIFQTFGV--PL-KSEWVLV-----LTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL   81 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~--~~-~~~~~~~-----~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~   81 (226)
                      +.+.+..+.+.++...  ++ .......     ...+...+++++.|+++||+|||+++..+..+..+....... .   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~---   85 (394)
T TIGR00883        10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL-L---   85 (394)
T ss_pred             HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-C---
Confidence            3444556666666433  22 2222222     222333568899999999999999999988887774333333 0   


Q ss_pred             CCchH------HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------H
Q psy10294         82 HWPGW------IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------T  147 (226)
Q Consensus        82 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  147 (226)
                      .+...      ..+.......+.......+....+++|.+|+++|++..++......+|..+++.+...+.        +
T Consensus        86 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~  165 (394)
T TIGR00883        86 PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL  165 (394)
T ss_pred             CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence            11110      112222222222222233455678999999999999999999888888888887765543        3


Q ss_pred             hhchhhHHHHHHHHHHHh
Q psy10294        148 WFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       148 ~~g~~~~~~~~~~~~~i~  165 (226)
                      .++||..+++.+.+..+.
T Consensus       166 ~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       166 EWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            568998887766655544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.20  E-value=2.1e-10  Score=97.71  Aligned_cols=151  Identities=16%  Similarity=0.182  Sum_probs=97.9

Q ss_pred             cceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          9 FVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         9 ~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      .+....+.|.+. ++.|.+. +.........+...++.++.++++||+|||+.+.....+..+....... ......+.+
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  313 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALLDSGSFT  313 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHhcCCchH
Confidence            344556788887 4577776 5566677778888999999999999999999877655544442211111 111112222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICA-AINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFI  161 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  161 (226)
                      ...........+.+ ...+....+++|.+|++.|+++.++.+ ....+++.++|.+.+.+.++.| |+..++.....
T Consensus       314 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       314 LFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            22222222222222 233556678899999999999999854 4456788899999999999888 76655544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.20  E-value=1.6e-10  Score=99.35  Aligned_cols=147  Identities=13%  Similarity=0.069  Sum_probs=99.6

Q ss_pred             ccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH-HHHHHHHHHhhcCCCch
Q psy10294          8 SFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICF-VFTIALAICSMNLHWPG   85 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~-i~~~~~~~~~~~~~~~~   85 (226)
                      +.....+++|.+.+++|.+. +.++..+...+...+++++.++++||+|||........+.. +.......     ..++
T Consensus        19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~   93 (382)
T TIGR00902        19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-----GAHN   93 (382)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-----hhhh
Confidence            33456688899999999988 77888888899999999999999999998654432222221 11111111     1122


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ...+...............+....+..|.  +++|++..|.....+.+|..+++.+.+.+.+++|||..+++....
T Consensus        94 ~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        94 AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            22222223222222223345555565543  577899999999999999999999999999999999988776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10133 L-fucose transporter; Provisional

Probab=99.20  E-value=6.7e-10  Score=97.49  Aligned_cols=131  Identities=6%  Similarity=-0.084  Sum_probs=92.6

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ....+.|.+.+++|.+. +.++......++..+++++.|++.||+|||+++..+..+..+..+......   ..+++..+
T Consensus        44 ~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~---~a~~~~~l  120 (438)
T PRK10133         44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA---EIMNYTLF  120 (438)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHH
Confidence            34567889988899998 778888999999999999999999999999999999988888433321100   12333333


Q ss_pred             HHHHHH-HHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         90 TIFCIC-FWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTS  145 (226)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      ...... +.+.+. ..+....++.|..|+++|....++.+....+|..+++.+...+
T Consensus       121 l~~r~l~G~g~g~-~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        121 LVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHH-HHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333332 222222 3344455677887777777788888888888888888776543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.19  E-value=4.6e-10  Score=96.91  Aligned_cols=147  Identities=10%  Similarity=0.088  Sum_probs=96.9

Q ss_pred             cccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+.|.+.+ ++|.+. +............+++.++.|+++||+|||+.+..+.....+.......     ..+.+..+.
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~  310 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-----AHSPAILLG  310 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHH
Confidence            345777665 468876 4555555556667888999999999999999877665554442222222     112222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .........+.. .+....+..|.+|++ |+++.++.+....++..+++.+.+.+.+++||+..+++...+..+..
T Consensus       311 ~~~l~~~~~g~~-~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~  384 (393)
T PRK15011        311 LQLLNAIYIGIL-GGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL  384 (393)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            222222222221 123345678999865 99999999888899999999999999999999888877666665554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.19  E-value=1.5e-10  Score=103.96  Aligned_cols=145  Identities=16%  Similarity=0.119  Sum_probs=103.8

Q ss_pred             cHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q psy10294         15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCI   94 (226)
Q Consensus        15 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      -++.+.++.|-+++..|......+...++.++.|.++|.||||..++.+.++..+..+....     .++.........+
T Consensus        66 ~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-----A~~~~~~iag~~l  140 (599)
T PF06609_consen   66 ILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT-----AQNMNTFIAGMVL  140 (599)
T ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc-----CCcHHHHHHHHHH
Confidence            35677888888777788888889999999999999999999999999999888883333333     1233333333334


Q ss_pred             HHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         95 CFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+.+  .|........++|+.|.|.|..+.++...........++.+...+..+-+|||.+++..++..+..
T Consensus       141 ~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  141 YGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            3333  344444556689999999999888776655444444566666655556789999998888776665

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.18  E-value=1.9e-10  Score=100.11  Aligned_cols=132  Identities=12%  Similarity=0.047  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhh
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPW  108 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (226)
                      .+.......+...++.++++++.||+|||+.+..+..+..+.......     ..+.+.............+ ...+...
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~~l~g~~~~-~~~~~~~  337 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF-----ATGPLEVSILKLLHAFEVP-FLLVGVF  337 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            345566677778899999999999999999988777766663333222     1222322222222222211 1123344


Q ss_pred             HHhhccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        109 MLMSEIFPVRIRGVACGI-CAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       109 ~~~~e~~p~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+++|.+|++.|++..+. .+....++..+++.+.+++.+.+||+..|...+.+..+..
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            677899999999988765 4566789999999999999999999998888877776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.18  E-value=3.6e-10  Score=95.91  Aligned_cols=156  Identities=13%  Similarity=0.189  Sum_probs=102.5

Q ss_pred             cceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHH--HHHHHHHHHH-HHHHHHHHhhcCCC
Q psy10294          9 FVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPM--SLWSTGICFV-FTIALAICSMNLHW   83 (226)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~--~~~~~~~~~i-~~~~~~~~~~~~~~   83 (226)
                      ...+..+.|.+.++ .|.+. +..+......+...++.++.++++||+|||+.  .......... ....... ...+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  309 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM-FATNYV  309 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH-HHhccc
Confidence            33455677777754 67776 56677778888899999999999999999962  1111111111 1111111 000111


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFIT  162 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  162 (226)
                      ....... ......+.+.+..+..+.+.+|.+|++.|+++.++.+....+++.+++.+.+.+.+..| |+..++..+.+.
T Consensus       310 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~  388 (399)
T TIGR00893       310 NIPYAAL-ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALA  388 (399)
T ss_pred             hhHHHHH-HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHH
Confidence            1222222 22222233333567778899999999999999999999999999999999999999888 888777777666


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      .+..
T Consensus       389 ~~~~  392 (399)
T TIGR00893       389 LIGA  392 (399)
T ss_pred             HHHH
Confidence            5554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.1e-10  Score=99.25  Aligned_cols=147  Identities=19%  Similarity=0.254  Sum_probs=111.7

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HH-HHHHHHhhcCCCchHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FT-IALAICSMNLHWPGWIPL   89 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~-~~~~~~~~~~~~~~~~~~   89 (226)
                      ....+.+.+++|++. |..+...+..+...+.-++.|++.||||-|+....+.++..+ +. .....     ..+++..+
T Consensus        34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~-----~~~~~~~l  108 (417)
T COG2223          34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV-----TYPSTWQL  108 (417)
T ss_pred             HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc-----cCCchHHH
Confidence            344556668899998 778888899999999999999999999999999999988877 32 22222     23333333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG---LHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~i~~  166 (226)
                      ..+.++.+..+ +.-++...+++++||++++|.+.|+.. .+++|..+...+.|.+....+   |+....++.....+..
T Consensus       109 l~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~  186 (417)
T COG2223         109 LVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA  186 (417)
T ss_pred             HHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33333333322 233445568999999999999999999 899999999999999999999   8888888877777765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.17  E-value=2.2e-10  Score=99.66  Aligned_cols=149  Identities=15%  Similarity=0.124  Sum_probs=97.7

Q ss_pred             cccceecccHHHHHhhc--CCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHH-HHHHHHHHHHHHHHHHHhhcCC
Q psy10294          7 SSFVSMRPYLVEIFQTF--GVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMS-LWSTGICFVFTIALAICSMNLH   82 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~   82 (226)
                      .+.+.+..|+|.++++.  +.+. +.........+...++.++.++++||++||+.. ........+. +....  .  .
T Consensus       256 ~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~~--~--~  330 (412)
T TIGR02332       256 NTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG-WLLAS--A--T  330 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH-HHHHH--h--c
Confidence            34556678999999885  4554 556677888888999999999999999987753 3333232222 11111  1  1


Q ss_pred             CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHH
Q psy10294         83 WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFI  161 (226)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  161 (226)
                      ...............+. ....+..+....|.+|++.|+++.|+.+....+++.++|.+.+.+.+..| |+..++..+++
T Consensus       331 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       331 DHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             CCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            11222221111111111 11223344566788999999999999999999999999999999888775 88777665554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=9.5e-11  Score=103.28  Aligned_cols=151  Identities=11%  Similarity=-0.021  Sum_probs=99.8

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHH--HHHHHHHHHHHHHhhcCCCc
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMSLWST--GICFVFTIALAICSMNLHWP   84 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~~~~~--~~~~i~~~~~~~~~~~~~~~   84 (226)
                      +....++|.+.++.|.+. +......+.+++.+++.++.++++||.  ++|+....+.  ....+..+....     ..+
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----~~~  332 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----AGD  332 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----hch
Confidence            344557788888888887 666777788888899999999999974  3343333322  222221111111     122


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHH
Q psy10294         85 GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITG  163 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  163 (226)
                      .+.........+.+. ....+..+.++.|.+|+++|+++.|+.+....+++.++|.+.+.+.+..+ |+..|++.+++.+
T Consensus       333 ~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~l  411 (455)
T TIGR00892       333 YTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVV  411 (455)
T ss_pred             HHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHH
Confidence            222222222222222 22335556778899999999999999999999999999999999888774 8888887777665


Q ss_pred             Hhh
Q psy10294        164 IGF  166 (226)
Q Consensus       164 i~~  166 (226)
                      +..
T Consensus       412 i~~  414 (455)
T TIGR00892       412 SAG  414 (455)
T ss_pred             HHH
Confidence            554

>KOG2615|consensus

Probab=99.16  E-value=1e-10  Score=98.42  Aligned_cols=111  Identities=10%  Similarity=0.032  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      +...+.+++.+.+.++.+|.++||+|||++++.+....++.......      +.+...++.-.+.. +..-+...+.-+
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~-Gi~kgnl~v~rA  143 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLG-GIFKGNLSVIRA  143 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh-hhccCchHHHHH
Confidence            56677889999999999999999999999999998888884433333      23333333324433 444455567778


Q ss_pred             HhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       110 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      +++|+.+++.|+.+++.......+|-+++|.+++++..
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999999999999999999877

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.16  E-value=2.1e-13  Score=119.36  Aligned_cols=132  Identities=16%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHhccccchhh
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW-PGWIPLTIFCICFWISGYGILALPW  108 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  108 (226)
                      .+......++..+|++++|+++||+|||+.++.+..+..+..+.... .   .. .+...+.....+.+....+..+...
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF-A---PSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccccccccccccccc-c---cccccccccccccccccccccccccccc
Confidence            46677888899999999999999999999999988888774333333 0   10 1333333333333332223345677


Q ss_pred             HHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhchhhHHHHHHHHHHHh
Q psy10294        109 MLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT---WFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       109 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~  165 (226)
                      +++.|..|+++|++..++.+....+|..++..+.....+   ..+||..+....+..++.
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~  184 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV  184 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999998888877777776655443322   235887766666665554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.15  E-value=4.3e-10  Score=100.13  Aligned_cols=151  Identities=11%  Similarity=0.083  Sum_probs=100.4

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-----CChHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-----GKRPMSL-WSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-----Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .....+|.+.++.|.+. +.... ...... .++.+++++++||+     |||+..+ .+.+...+....... . . ..
T Consensus        30 ~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~-~-~-~~  104 (491)
T PRK11010         30 LTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF-L-E-PG  104 (491)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH-c-C-Cc
Confidence            33445778888888876 33433 222222 26889999999999     9998654 444444443333323 1 1 11


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT-WFGLHGTLFIYSFIT  162 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~  162 (226)
                      .+...+...............+....+..|++|+++|+++.++......+|..+++.+...+.+ ..|||..|++.+.+.
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~  184 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALL  184 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            2222333233333333334445566789999999999999999999999999999999888888 579999999888776


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      .+..
T Consensus       185 ll~~  188 (491)
T PRK11010        185 IPCI  188 (491)
T ss_pred             HHHH
Confidence            6654

>KOG2504|consensus

Probab=99.13  E-value=4.6e-10  Score=100.01  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=112.2

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .+..+.+.+.++++.+. +..|..++......+.+++.+.+.||+|.|++.+.+.++..+..+...+      ..+...+
T Consensus        64 ~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF------~~~i~~l  137 (509)
T KOG2504|consen   64 SFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSF------ATSLWQL  137 (509)
T ss_pred             eehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH------HhhHHHH
Confidence            34467788888888877 6788888888888999999999999999999999999999985444444      1223333


Q ss_pred             HHHHHHHHHHhccccchhh-HHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPW-MLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~-~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .+......+.+.+....+. +.+. .+.+|+|+.++|+......+|.++.|.+..++.+.+|||+.+++.+.+.+-..
T Consensus       138 ~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~  214 (509)
T KOG2504|consen  138 YLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVL  214 (509)
T ss_pred             HHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            3333333333444332222 2344 45567799999999999999999999999999999999999999888876554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.13  E-value=2.3e-09  Score=91.27  Aligned_cols=147  Identities=14%  Similarity=0.213  Sum_probs=98.1

Q ss_pred             cccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+.|.+. +++|.+. +..+..........++.++.+++.||+|||+.+..+.....+.......     ..+.+....
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  293 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA-----DNSLWALLM  293 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            34456665 4578776 4555555555566778899999999999999888776654443222222     112222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .......+.+. ..+....+..|..|++ |+++.++.+....++..+++.+.+.+.+..||+..++..++...+..
T Consensus       294 ~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~  367 (375)
T TIGR00899       294 LQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL  367 (375)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            22222222222 2345556788988865 66999999999999999999999999999999988888777766654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.12  E-value=8.9e-10  Score=94.89  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=97.3

Q ss_pred             cccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+.|.+.++ .|.+. +..+......+..+++.++.+++.||+|||+... +..+.......... .   ..+.+....
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~-~---~~~~~~~~~  299 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLP-A---ANSEWHLSV  299 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHH-H---hchHHHHHH
Confidence            3455655555 67776 5667777788889999999999999999887543 33333332222111 0   122222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                       ...+.+.......+.....+.|..| +.|+++.|+.+....++..+++.+.+.+.+++|++..++..+.+..+..
T Consensus       300 -~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~  373 (390)
T PRK03545        300 -LSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAAL  373 (390)
T ss_pred             -HHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence             2222222222233334456667766 5789999999999999999999999999999999988888877777665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=1.5e-09  Score=105.34  Aligned_cols=128  Identities=9%  Similarity=-0.006  Sum_probs=88.3

Q ss_pred             HHHhhcCCCch---HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q psy10294         18 EIFQTFGVPLK---SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCI   94 (226)
Q Consensus        18 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      .+..+++.+..   ..+..++..+...++++++|+++||+|||++++++..+.++..+....+..   ..+...+....+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~  111 (1146)
T PRK08633         35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY---LGWFWLAFAVTF  111 (1146)
T ss_pred             HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHH
Confidence            34444555432   245566777888899999999999999999999887765552222221010   122333333333


Q ss_pred             HHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         95 CFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      +.+.......+....+++|++|+++|+++.|+......++..+++.+.+++.+.
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333334566678999999999999999999999999999999999988775

>KOG2533|consensus

Probab=99.10  E-value=3.1e-09  Score=94.16  Aligned_cols=141  Identities=16%  Similarity=0.008  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhhcCCCchHHHHHHHHHHHHHHhccccch
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFT-IALAICSMNLHWPGWIPLTIFCICFWISGYGILAL  106 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (226)
                      +-+...+++.++.+++.+.++.+.||+.-.+.+....+...+.. +....       .+...+....++.+.+..+..|.
T Consensus        82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~llGl~es~~wP~  154 (495)
T KOG2533|consen   82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLLGLFESGGWPG  154 (495)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhcccchH
Confidence            34577889999999999999999999996666666555555533 22222       22333444444445555555566


Q ss_pred             hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhchhhHHHHHHHHHHHhhhhhhcccccccccc
Q psy10294        107 PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI------TWFGLHGTLFIYSFITGIGFAIRIRGVACGICAA  180 (226)
Q Consensus       107 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  180 (226)
                      ...+++.++.+++|++-+++.+....+|+++++.+...+.      ...|||+.|++.++++++..              
T Consensus       155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g--------------  220 (495)
T KOG2533|consen  155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG--------------  220 (495)
T ss_pred             HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH--------------
Confidence            6678999999999999999999999999999998887753      34689999999999999988              


Q ss_pred             eeEEEEecc
Q psy10294        181 INSIVCFLV  189 (226)
Q Consensus       181 ~~~~~~~~e  189 (226)
                      +++++++|+
T Consensus       221 i~~f~~lp~  229 (495)
T KOG2533|consen  221 IVVFFFLPD  229 (495)
T ss_pred             heEEEEecC
Confidence            889999998

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.09  E-value=5.7e-10  Score=97.08  Aligned_cols=155  Identities=14%  Similarity=0.072  Sum_probs=94.5

Q ss_pred             cceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          9 FVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      .....+++|.++++ +|++. +.+...+...+...+++++.|+++||+|||+.++++..+..+........... .....
T Consensus        26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  104 (420)
T PRK09528         26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA-PLLQY  104 (420)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            34556777777776 89988 77888999999999999999999999999999887665554421111110000 00000


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFP--VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      .............+.+..+.. ....++.+  .+.|+...|.......+|..+++.+.+.+.+ .+|+..|+..+....+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~  182 (420)
T PRK09528        105 NILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALI  182 (420)
T ss_pred             HHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHH
Confidence            001111111111111111111 11222222  2456777788888889999999999888766 4888888887766665


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       183 ~~  184 (420)
T PRK09528        183 LL  184 (420)
T ss_pred             HH
Confidence            54

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.09  E-value=1.7e-09  Score=93.16  Aligned_cols=158  Identities=12%  Similarity=0.005  Sum_probs=101.4

Q ss_pred             cccceecccHHHHHhhcCCCc-hHHHH--HHHHHHHHHHHHHHH-HHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcC
Q psy10294          7 SSFVSMRPYLVEIFQTFGVPL-KSEWV--LVLTGVLAITGSLVS-SLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNL   81 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~~~~~~~~-~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~   81 (226)
                      .......+++|.++++.|.+. +.+..  .....+...+.+++. ++..||+|||+..++...+... ....... ....
T Consensus        15 ~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~-~~~~   93 (390)
T TIGR02718        15 IPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL-VGPD   93 (390)
T ss_pred             hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc-CCcc
Confidence            344556789999999999987 55554  345566776776666 5678999999987655533222 2222221 0011


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      .......+. .............+....+..|..+++.++...+.......+|..+++....++.+++|||.+|++.+.+
T Consensus        94 ~~~~~~~~~-~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l  172 (390)
T TIGR02718        94 VAGAGWAVG-LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACV  172 (390)
T ss_pred             hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            111112122 2222222233334445556778888888888888887777888899988888889999999999988887


Q ss_pred             HHHhh
Q psy10294        162 TGIGF  166 (226)
Q Consensus       162 ~~i~~  166 (226)
                      ..+..
T Consensus       173 ~~~~~  177 (390)
T TIGR02718       173 PLASL  177 (390)
T ss_pred             HHHHH
Confidence            76654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.08  E-value=3.1e-09  Score=93.88  Aligned_cols=164  Identities=12%  Similarity=0.035  Sum_probs=103.7

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHH-HHHHHHHHhh-----
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVN----KFGKRPMSLWSTGICFV-FTIALAICSM-----   79 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d----~~Grr~~~~~~~~~~~i-~~~~~~~~~~-----   79 (226)
                      ....+++.+.+++|.+. ..........+...+..++.|+++|    |+|||+.++.+..+..+ ....+.....     
T Consensus        22 l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~  101 (477)
T TIGR01301        22 LQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF  101 (477)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence            34566777888899987 6677777888888999999999999    59999999876444443 2222222000     


Q ss_pred             c----CCCchH---HHHHHHHHHHHHHhccccchhhHHhhccCCcchh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHh
Q psy10294         80 N----LHWPGW---IPLTIFCICFWISGYGILALPWMLMSEIFPVRIR--GVACGICAAINSIVCFLVTKTYVTS--ITW  148 (226)
Q Consensus        80 ~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  148 (226)
                      .    .....+   ..+..+.+..........| .-++++|.+|+++|  +.+.++.+....+|+.+++.+.+..  .+.
T Consensus       102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~  180 (477)
T TIGR01301       102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI  180 (477)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence            0    000011   1111122222222222223 34689999999866  5788888888889999988877653  222


Q ss_pred             h-------------chhhHHHHHHHHHHHhhhhhhcccccccccceeEEEEecc
Q psy10294        149 F-------------GLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       149 ~-------------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      +             +.+..|++-+++..+..              ++..+..||
T Consensus       181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~--------------l~t~~~v~E  220 (477)
T TIGR01301       181 FPFTKTEACGVSCANLKSCFLIDIILLAILT--------------YIALSAVKE  220 (477)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHH--------------HHHeeeeec
Confidence            2             34667777777666666              666677888

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764|consensus

Probab=99.08  E-value=3.4e-10  Score=95.80  Aligned_cols=133  Identities=11%  Similarity=0.069  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchh
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      +.++......+.+++.+++.|.+.||+|+|..+++|..+.....+...+      ...+..+...+.+.+..........
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf------g~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF------GNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH------cchhHHHHHHHHHhhhhHHHHHhhh
Confidence            4567788888999999999999999999999999999999886655555      2334444444444444333334445


Q ss_pred             hHHhhccCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        108 WMLMSEIFPVRI-RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       108 ~~~~~e~~p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..++++.||.+. |++++|+.-.+..+|..++|+.++.+.+..|.+.+|.+.+++.++..
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~  240 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG  240 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence            568889999855 79999999999999999999999999999999999999999998876

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.07  E-value=2.6e-10  Score=104.31  Aligned_cols=136  Identities=12%  Similarity=-0.003  Sum_probs=98.1

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc----------
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICS-MN----------   80 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~-~~----------   80 (226)
                      ..-+|++.++++++. +.++..+...++..++.++.+++.||+|||+.+.++.++.++..+....-. ..          
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            344677788899987 778888899999999999999999999999999999888888332222101 00          


Q ss_pred             ---------------C-----------------C--CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHH
Q psy10294         81 ---------------L-----------------H--WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGI  126 (226)
Q Consensus        81 ---------------~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~  126 (226)
                                     .                 .  ...+..+.+..++.+.......+....++.|.+|+++|++..++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                           0                 0  00122232333333333333345667899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy10294        127 CAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      .+....+|..+++.+.+.+.+.
T Consensus       213 ~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc
Confidence            9999999999999998887754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.07  E-value=1.1e-08  Score=87.80  Aligned_cols=145  Identities=9%  Similarity=0.000  Sum_probs=102.9

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ..++|.+.++.|.+. +.........+...++.+..+++.||+|||+.+..+.....+.......      .. .. ...
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~------~~-~~-~~~  291 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS------QA-AM-APA  291 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh------hH-HH-HHH
Confidence            456788888888876 5566667778888999999999999999999888776666553222111      11 11 111


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ....+ ..+....|.....+.|..|+++++...+.......+|+.++|.+.+.+.++.|+++.|.+.+.+.++..
T Consensus       292 ~~l~g-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        292 LFILG-AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHH-HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            11111 112233455666778999988888888887788889999999999999999999888888777766554

>PRK03699 putative transporter; Provisional

Probab=99.06  E-value=3.5e-09  Score=91.45  Aligned_cols=150  Identities=15%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +.+..|.|.+.++ +|++. +.........++..++.++.++++||++||+.+.....+..+.......     ..+...
T Consensus       222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~  296 (394)
T PRK03699        222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN-----TDDPSH  296 (394)
T ss_pred             HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-----cCCchH
Confidence            4556788988854 68887 5667777888889999999999999999999887766655543222222     112222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ........+ ....+..+....+..|..|. .+++..+.......+++.++|.+.+++.+..|++..++..+.+..+..
T Consensus       297 ~~~~~~~~G-~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (394)
T PRK03699        297 LLYAILGLG-FFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF  373 (394)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence            222222222 22222334444566676664 467778888888899999999999999999999888887777666654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.05  E-value=1.6e-09  Score=91.83  Aligned_cols=142  Identities=16%  Similarity=0.133  Sum_probs=90.8

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHH-HHHHHHHHHHHHhhcCCCch
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTG-ICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~-~~~i~~~~~~~~~~~~~~~~   85 (226)
                      ..+..+.|.+.++ .|.+. +.........+...++.++.+++.||..+ |+....... ...........   .....+
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  309 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW---LNPAAN  309 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh---cCcchh
Confidence            3445667777754 68876 56677778888899999999999998643 332221111 11111111111   001112


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGT  154 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  154 (226)
                      ...........+....+..+..+.+.+|.+|++.|+++.|+.+....+++.+++.+.+.+.+++||+..
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            222222222222223333444566788999999999999999999999999999999999999998764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.04  E-value=6.7e-10  Score=95.86  Aligned_cols=156  Identities=10%  Similarity=0.028  Sum_probs=95.1

Q ss_pred             cccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCC-C
Q psy10294          7 SSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLH-W   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-~   83 (226)
                      .+.....+++|.+.++ +|.+. +..+......+...++.++.|+++||+|||+.++.+.....+............. .
T Consensus        16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (396)
T TIGR00882        16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ   95 (396)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444556777777654 79887 7788889999999999999999999999999998776665542221111000000 0


Q ss_pred             chHH-HHHHHH-HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         84 PGWI-PLTIFC-ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        84 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      .... ...... ......+. ..+....+..|..  +.++...|.....+.+|..+++.+.+.+.+ .+|+..|++.+.+
T Consensus        96 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~  171 (396)
T TIGR00882        96 SNILVGAIVGGLYLGFVFSA-GAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGF  171 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHH
Confidence            0111 111111 11111221 2233333444432  234455667777778888899988877654 5999988887777


Q ss_pred             HHHhh
Q psy10294        162 TGIGF  166 (226)
Q Consensus       162 ~~i~~  166 (226)
                      ..+..
T Consensus       172 ~~~~~  176 (396)
T TIGR00882       172 ALILM  176 (396)
T ss_pred             HHHHH
Confidence            66654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.02  E-value=4.9e-10  Score=95.55  Aligned_cols=154  Identities=16%  Similarity=0.198  Sum_probs=111.6

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHhhcCCCch
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMSLWSTGICFVFTIALAICSMNLHWPG   85 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (226)
                      +.+..|.|.++.| .|++. ++.+..+.+=.+.++|++++|+++||.  |||...-+...+.....+..+.   .++..+
T Consensus       269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w---~~~~~~  345 (448)
T COG2271         269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW---LAPNGS  345 (448)
T ss_pred             HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---cCCCcc
Confidence            3556788888866 68887 788999999999999999999999996  6776554333332222222222   222233


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITWFGLHGTLFIYSFITGI  164 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  164 (226)
                      +..........++.-.|+.-+.-....|..|.+--|++.|+...++.+ |...+....+++.+.+||.+.|....+...+
T Consensus       346 ~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l  425 (448)
T COG2271         346 YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALL  425 (448)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHH
Confidence            444444444455555566656667888999999999999999999998 8888888888888889999988877776666


Q ss_pred             hh
Q psy10294        165 GF  166 (226)
Q Consensus       165 ~~  166 (226)
                      ..
T Consensus       426 ~~  427 (448)
T COG2271         426 AI  427 (448)
T ss_pred             HH
Confidence            54

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=4.2e-09  Score=91.73  Aligned_cols=154  Identities=13%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             eecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHH-HHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK----FGKRPM-SLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~----~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ....|++.++. ++|++. ..+.......+...+..++.|+++||    +|||+. ++.+.....+..+.... ......
T Consensus        17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~-~~~~~~   95 (437)
T TIGR00792        17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT-TPDFSA   95 (437)
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh-CCCCCc
Confidence            34455555555 579987 67788888889999999999999997    677554 55566665553333333 111001


Q ss_pred             ch-HHH-HHHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchhh
Q psy10294         84 PG-WIP-LTIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSIT-------WFGLHG  153 (226)
Q Consensus        84 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~  153 (226)
                      .. ... .........+.+.. ..-..++..|+. ++++|++..++...+..+|..+.+.+.+.+..       ..+|+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~  174 (437)
T TIGR00792        96 TGKLVYAYITYILLGLFYSFV-NIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFM  174 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHhh-cccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHH
Confidence            11 111 11112222222221 111234667876 57899999999888888887776665544442       457888


Q ss_pred             HHHHHHHHHHHhh
Q psy10294        154 TLFIYSFITGIGF  166 (226)
Q Consensus       154 ~~~~~~~~~~i~~  166 (226)
                      .+.+.+++..+..
T Consensus       175 ~~~i~~~l~~~~~  187 (437)
T TIGR00792       175 FALVLALIGVVSL  187 (437)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887777665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=4e-09  Score=102.60  Aligned_cols=125  Identities=9%  Similarity=-0.153  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhh
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPW  108 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (226)
                      .+......+...+.++++|+++||+|||+++........+ ....... ..   ..+...+....++.+.......+...
T Consensus        55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~-~~---~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYG-FH---LNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH-HH---HhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            3445566777789999999999999999976442222222 1111111 10   12333344444444444444567788


Q ss_pred             HHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy10294        109 MLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIY  158 (226)
Q Consensus       109 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  158 (226)
                      .++.|++|++.|++++|+.++...++..+++.+.+.+....+|+..|+..
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~  180 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL  180 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            89999999999999999999999999999999999999999998777333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.00  E-value=3.1e-09  Score=91.62  Aligned_cols=128  Identities=9%  Similarity=0.011  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhh
Q psy10294         33 LVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMS  112 (226)
Q Consensus        33 ~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (226)
                      .....++..++.+..++++||+|||+.+..+.....+..+....     ....+.........+.+.+ ...+.......
T Consensus       264 ~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~  337 (408)
T PRK09874        264 ASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF-----VQTPLQLGILRFLLGAADG-ALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhH-hhHHHHHHHHH
Confidence            34456667788888999999999999988877766553333332     1222222222222222222 22344445667


Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        113 EIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       113 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      |..|++.|++..++......++..++|.+.+.+.++.||+..|+..+++.++..
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~  391 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNA  391 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999998888887777665

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.99  E-value=1.7e-08  Score=85.07  Aligned_cols=132  Identities=14%  Similarity=0.069  Sum_probs=94.4

Q ss_pred             ccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+.|.+.++ +|.+. +.........++..++.++.+++.||+|||+.+..+..+..+....... .   ..+.+.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~  307 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGL-T---PPNFPLFLVL  307 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh-h---chhHHHHHHH
Confidence            567777776 68876 5667777888888999999999999999999888776665553333332 0   1112222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      ....+.+.+ ...+....+..|..|+++|+++.|+.+....++..+++.+.+.+.+++|
T Consensus       308 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       308 WFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222222222 2345566788999999999999999999999999999999998888654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.99  E-value=4.2e-09  Score=91.74  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchh
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      ...+......+..+++.++.++++||+|||+.+..+..+..+.......  .  ..+.+.........+.+.+ ...+..
T Consensus       258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~-~~~~~~  332 (437)
T TIGR00792       258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF--A--GSNLPLILVLIILAGFGQN-FVTGLV  332 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--c--chhHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3445556667888899999999999999999998887776663333222  0  1122222222222222222 234556


Q ss_pred             hHHhhccCC-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        108 WMLMSEIFP-------VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       108 ~~~~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      +.+.+|..|       ++.+|+..|+.+....++..+++.+.+.+.+..|+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777778765       56789999999999999999999999999887765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.98  E-value=7.3e-09  Score=88.96  Aligned_cols=151  Identities=11%  Similarity=0.119  Sum_probs=90.6

Q ss_pred             cccccceecccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCh---HHHHH-HHHHHHHHHHHHHHHhhc
Q psy10294          5 FNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKR---PMSLW-STGICFVFTIALAICSMN   80 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr---~~~~~-~~~~~~i~~~~~~~~~~~   80 (226)
                      .....+.+..|+|+++++.|++.+......+..   ..+.+..++++||..||   +.... ......+.......    
T Consensus       204 ~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~----  276 (368)
T TIGR00903       204 GVALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF----  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----
Confidence            344556778899999988887644333333333   34445557788887653   33222 22222222111111    


Q ss_pred             CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy10294         81 LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSF  160 (226)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  160 (226)
                       ............. ......+..+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..  +.+..|..++.
T Consensus       277 -~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~  352 (368)
T TIGR00903       277 -ELNRLALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAI  352 (368)
T ss_pred             -ccccHHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence             1122222222222 2222222334566789999999999999999999999999999998887663  55566777776


Q ss_pred             HHHHhh
Q psy10294        161 ITGIGF  166 (226)
Q Consensus       161 ~~~i~~  166 (226)
                      ...+..
T Consensus       353 ~~~i~~  358 (368)
T TIGR00903       353 LITIAF  358 (368)
T ss_pred             HHHHHH
Confidence            666654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.96  E-value=2.7e-09  Score=94.63  Aligned_cols=147  Identities=12%  Similarity=0.094  Sum_probs=85.7

Q ss_pred             ecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChH-------HHHHHHHHHHHHHHHHHHHhhcCC
Q psy10294         12 MRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRP-------MSLWSTGICFVFTIALAICSMNLH   82 (226)
Q Consensus        12 ~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~-------~~~~~~~~~~i~~~~~~~~~~~~~   82 (226)
                      +..+.|.++. ++|++. +......+..+...++.+++|+++||+|||+       .......+..+..+....     .
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----~  345 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-----A  345 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc-----c
Confidence            3456777765 468887 6677778888999999999999999998762       111222221111111111     1


Q ss_pred             CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy10294         83 WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFIT  162 (226)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  162 (226)
                      .+.............+.+. ..+..+.+..|.. ++.|+++.|+.+..+.+++.+++.+.. ..+..+|+..|+..+++.
T Consensus       346 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~  422 (476)
T PLN00028        346 NSLGAAIVVMILFSIFVQA-ACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMI  422 (476)
T ss_pred             chHHHHHHHHHHHHHHHHH-hhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHH
Confidence            1222222222222222221 2223445566664 478999999998888788888776653 112335777787777666


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      +++.
T Consensus       423 ~i~~  426 (476)
T PLN00028        423 IACT  426 (476)
T ss_pred             HHHH
Confidence            6554

>TIGR00895 2A0115 benzoate transport

Probab=98.96  E-value=9.4e-09  Score=87.70  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      +....+.|.+.++.|.+. +.........++..++.++.++++||+|||+..................     ....+..
T Consensus       267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (398)
T TIGR00895       267 YFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST-----LFSPTLL  341 (398)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-----hhCHHHH
Confidence            344567787778888887 5667777888889999999999999999995544333332222222111     1222222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTS  145 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      .......+.+.+ ...+..+.+.+|.+|+++|+++.|+.+....++..++|.+.+.+
T Consensus       342 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       342 LLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            222233222222 23455677899999999999999999999999999999887653

>PRK10504 putative transporter; Provisional

Probab=98.92  E-value=1.1e-08  Score=90.15  Aligned_cols=137  Identities=10%  Similarity=0.044  Sum_probs=91.8

Q ss_pred             ecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         12 MRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        12 ~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ...+.|.+++. .|.+. +..+......+...++.++.+++.||+|||+.+..+..+..+....... . ......+...
T Consensus       280 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~  357 (471)
T PRK10504        280 LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML-V-ALLGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh-c-cccccHHHHH
Confidence            34567777774 78776 5566666677777778899999999999999998887766663332222 1 1011111111


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      ......+.+.+.. .+....+..+..|++.|+++.++.+....++..+++.+.+.+.+..|+
T Consensus       358 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        358 FVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1122222222222 233446777899999999999999999999999999999888777664

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.92  E-value=2.3e-08  Score=88.57  Aligned_cols=157  Identities=14%  Similarity=0.100  Sum_probs=109.8

Q ss_pred             cceecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCCh--HHHHHHHHHHHH-HHHHHHHHhhc--C
Q psy10294          9 FVSMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKR--PMSLWSTGICFV-FTIALAICSMN--L   81 (226)
Q Consensus         9 ~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr--~~~~~~~~~~~i-~~~~~~~~~~~--~   81 (226)
                      ...+......+.+ ++|++. +.........+.+++|+++++++.||+|.|  ++++.+.+...+ ...+..-....  .
T Consensus       297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g  376 (477)
T PF11700_consen  297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG  376 (477)
T ss_pred             HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            3334444445554 588887 556677788899999999999999999999  888777776654 33333310000  0


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSF  160 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  160 (226)
                      ....+... .+....+....+..+..-++.+|+.|+.+.+.-.|+....+...++++|.+.+.+.+..| .|..+....+
T Consensus       377 ~~~~~~f~-~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~  455 (477)
T PF11700_consen  377 LKSPWEFW-VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV  455 (477)
T ss_pred             cccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            12233322 222233333334456777899999999999999999999999999999999999998887 6777777766


Q ss_pred             HHHHhh
Q psy10294        161 ITGIGF  166 (226)
Q Consensus       161 ~~~i~~  166 (226)
                      +.+++.
T Consensus       456 lf~~gl  461 (477)
T PF11700_consen  456 LFLIGL  461 (477)
T ss_pred             HHHHHH
Confidence            666665

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.90  E-value=1.1e-07  Score=84.84  Aligned_cols=150  Identities=11%  Similarity=0.008  Sum_probs=98.3

Q ss_pred             cHHHHH-hhcCCCc-hHHHHH-HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         15 YLVEIF-QTFGVPL-KSEWVL-VLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        15 ~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      +.+.++ ++.|++. +..... ....++.+++.+++|+++||+|||+.+..+..+..+..+........ ..+.+.....
T Consensus       244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~  322 (491)
T PRK11010        244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAA  322 (491)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence            445554 5578887 555554 35557889999999999999999988776665544422221110111 1122221212


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ........+.+. +..+.+..|..|++.+++..++.+....++..+.+.+.+.+.+.+||+..|.+.+.+.+++.
T Consensus       323 ~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l  396 (491)
T PRK11010        323 VFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL  396 (491)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            222112222222 23456778999999999999999999999999888899999999999887777777766654

>KOG0253|consensus

Probab=98.90  E-value=6.9e-09  Score=87.37  Aligned_cols=137  Identities=16%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy10294         21 QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWIS   99 (226)
Q Consensus        21 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (226)
                      ...|.+. +....+.....+..+++..+|..+|++|||+.+........+.......      +++... +...-...++
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~------spnf~~-L~~f~~l~~~  178 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA------SPNFAS-LCVFRALWGF  178 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC------CCCeeh-hhHHHHHHhc
Confidence            3345555 5567777888899999999999999999999988777766653322222      333333 3333334455


Q ss_pred             hccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294        100 GYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       100 ~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      +.|..|...++-.|..|...|...+-+. ....+|......+.-....++|||+.++.......+.
T Consensus       179 g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~  243 (528)
T KOG0253|consen  179 GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA  243 (528)
T ss_pred             cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence            5555677666777999999999887666 7778888888888777888999998766666444444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.89  E-value=8.6e-08  Score=82.48  Aligned_cols=150  Identities=11%  Similarity=-0.016  Sum_probs=107.6

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      ......+.|.+.++.|.+. ..........+..+++.+..+.+.||+|+|+.+.++.+...+.......     .++.+.
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----~~~~~~  295 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA-----IEAFPL  295 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh-----HhhHHH
Confidence            3345567788888889887 5666666777888889999999999999999999888888873333332     123333


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAA-INSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ......+.+..++.. .+....++++. |++.|+++.++.+. ...++..+++.+.+++.+++|. ..|+..+.+.++..
T Consensus       296 ~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       296 IFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            344444444444433 23445678787 99999999998764 5668899999999999999986 56777777766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.88  E-value=1.1e-07  Score=81.94  Aligned_cols=154  Identities=11%  Similarity=0.014  Sum_probs=96.3

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHH-HHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTG-VLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~   88 (226)
                      ...+.+.+.+|.|++. +..+...... ....++.++.+++.||+|+|+.+..+.....+ ...................
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            3445677778888887 4555555444 35567789999999999999998877766533 2211111000000111111


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPV-RIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ...........+... +.......+..++ +.|++..++.+....++..+++.+.+.+.++.|++..|...+.+.++..
T Consensus       307 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       307 WSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            111111111222222 2333344455655 8999999999999999999999999999999999888877766655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.83  E-value=8.5e-08  Score=84.40  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=101.4

Q ss_pred             ccccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10294          4 GFNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLH   82 (226)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~   82 (226)
                      +.+.++..+..++|.+.++ .++. .......+..+...+..+++|+++||+|+|+++.++.+...+...........+.
T Consensus       263 ~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~  341 (462)
T PRK15034        263 ATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG  341 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3445556677788888876 3433 2223344556677888899999999999999999888877774433222111111


Q ss_pred             Cch-HHHHHHHHHHHHHHhccccchhhHHhhccCCc---------------------chhhhHHHHHHHHHHHHHHHHHH
Q psy10294         83 WPG-WIPLTIFCICFWISGYGILALPWMLMSEIFPV---------------------RIRGVACGICAAINSIVCFLVTK  140 (226)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~R~~~~~~~~~~~~~~~~~~~~  140 (226)
                      ..+ +.....+..+....+.+.+ ..+-++.+.+|+                     ++-|...|+....+.+|+++.|.
T Consensus       342 ~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        342 SGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             ccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence            111 2222222233344444443 344567777874                     25677888999999999999999


Q ss_pred             HHHHHHHhhc-hhhHHHHHHHHHHHhh
Q psy10294        141 TYVTSITWFG-LHGTLFIYSFITGIGF  166 (226)
Q Consensus       141 ~~~~~~~~~g-~~~~~~~~~~~~~i~~  166 (226)
                      +++...+..| +...++.+.....++.
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~  447 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCV  447 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            9988887765 4445666666555554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.82  E-value=3.6e-08  Score=86.91  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             cccccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHH-------HHHHHHHHH-HHHHH
Q psy10294          5 FNSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMS-------LWSTGICFV-FTIAL   74 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~-------~~~~~~~~i-~~~~~   74 (226)
                      +..+.+.+..|+|.++++ .|.+. +..+...+..++..++.++.|+++||+++|+..       +........ .....
T Consensus       273 ~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (465)
T TIGR00894       273 HFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAY  352 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667889988865 68887 667777788899999999999999998654211       111111111 11111


Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---ch
Q psy10294         75 AICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF---GL  151 (226)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~  151 (226)
                      ..  ..........+..+.....+.+ +..+..+....|..|. .+|.+.++.+..+.+++.++|.+.+.+.+..   +|
T Consensus       353 ~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~  428 (465)
T TIGR00894       353 AL--PYLSAAFYLTIIILTLANAVSS-GPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVW  428 (465)
T ss_pred             HH--HHcCCchHHHHHHHHHHHHHhh-hhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHH
Confidence            11  0001122222222222222221 1223333445566665 8999999999999999999999988876542   37


Q ss_pred             hhHHHHHHHHHHHhh
Q psy10294        152 HGTLFIYSFITGIGF  166 (226)
Q Consensus       152 ~~~~~~~~~~~~i~~  166 (226)
                      +..|.+.++..++..
T Consensus       429 ~~~f~~~~~~~~i~~  443 (465)
T TIGR00894       429 LIVFLIMAFVNILCV  443 (465)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777776665

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.82  E-value=8.1e-08  Score=86.06  Aligned_cols=137  Identities=14%  Similarity=0.121  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchh
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALP  107 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (226)
                      ..........+-.++.++++|.++||+.||+.++.+..+..+....+......+..+.+..+. +.+..+....-..|.-
T Consensus        46 ~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~-~~fl~g~~~a~~~PA~  124 (524)
T PF05977_consen   46 MVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLI-LTFLLGIGSAFFNPAW  124 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHHHHHHHHHH
Confidence            334555566666678899999999999999999999888776332222211222223333333 3333333333345777


Q ss_pred             hHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294        108 WMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       108 ~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      .+++.|+.|+++-..+.++.+...++...++|.+.+.+...+|....|.+.++..++.
T Consensus       125 ~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~  182 (524)
T PF05977_consen  125 QAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLIS  182 (524)
T ss_pred             HHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999888877777665544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.81  E-value=1.1e-07  Score=83.82  Aligned_cols=137  Identities=12%  Similarity=-0.022  Sum_probs=93.0

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +....++|.++++ .|.+. +..+......++..++.++.+++.||+|||+.+..+..+..+....... ......+.+.
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~  350 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF-TFTPDTPFLA  350 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc-cCCCCCCHHH
Confidence            3445678888876 68887 6677777888889999999999999999999988877766653332221 1111122222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      ........+.+.+....+. .....|..|+++|+++.++.+....+++.+++.+.+.+.++
T Consensus       351 ~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       351 IALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222222232 33456778999999999999999999999999998887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.81  E-value=9.4e-08  Score=77.50  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=94.1

Q ss_pred             cccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC-c
Q psy10294          7 SSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW-P   84 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~   84 (226)
                      ...|.+..|.|++.+.+|++. +.........++..+ +++.|.+.|++|.|.++.++.+...+.......+....-. .
T Consensus        16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~   94 (250)
T PF06813_consen   16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL   94 (250)
T ss_pred             CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence            456888999999999999997 556666677777766 4888999999999999999999888833333331222111 2


Q ss_pred             hHHHHHHHHHHHHHHhccc-cchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         85 GWIPLTIFCICFWISGYGI-LALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      +.+.+..... .++.+..+ +........+.|| ++||++.|+.-....+++.+.+.+.....+.
T Consensus        95 ~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   95 PVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             chHHHHHHHH-HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            3333332222 22223222 2333334457788 4799999999999999888888777766554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.77  E-value=6.5e-07  Score=76.84  Aligned_cols=152  Identities=13%  Similarity=0.163  Sum_probs=107.7

Q ss_pred             ccccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          6 NSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      ++|.+....|+..++++ .|++. ...+....++++.++|+.++|.++|| +.|+.+.....+..+..+.+.. .   ..
T Consensus       224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~-~---~~  298 (394)
T COG2814         224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF-T---GA  298 (394)
T ss_pred             HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH-h---cc
Confidence            45666666776666665 68887 67888999999999999999999999 8888888776776664444333 0   12


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhcc--CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEI--FPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ..+........  +++....  ....+..+.  .-++.++.+.++.....++|..++..+++.+.+++|+....+.-+.+
T Consensus       299 ~~~~~~~~~~~--wg~a~~~--~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l  374 (394)
T COG2814         299 SPALALALLFL--WGFAFSP--ALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL  374 (394)
T ss_pred             hHHHHHHHHHH--HHHHhhh--hhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            22222222222  3333333  332333333  33677999999999999999999999999999999998888877777


Q ss_pred             HHHhh
Q psy10294        162 TGIGF  166 (226)
Q Consensus       162 ~~i~~  166 (226)
                      ..+..
T Consensus       375 ~~~a~  379 (394)
T COG2814         375 LLLAL  379 (394)
T ss_pred             HHHHH
Confidence            76665

>TIGR00896 CynX cyanate transporter

Probab=98.77  E-value=2.2e-07  Score=78.95  Aligned_cols=134  Identities=12%  Similarity=0.012  Sum_probs=88.0

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +....|+|.+.++.|.+. +.........++.+++.++.+++.||+ +||+.+..+..+..+.......     ......
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  288 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF-----APMHGL  288 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-----hhhhHH
Confidence            345567898998888887 566777888899999999999999999 5666666666555553332222     011111


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhh-ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMS-EIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      .. .....+.+.+. ..+.....+. +..+++.++...++.+....++..++|.+.+.+.++.|
T Consensus       289 ~~-~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       289 WA-WALVLGLGQGG-AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HH-HHHHHHHhhhh-HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11 11222222221 2233333444 34456778899999888889999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.76  E-value=1.7e-07  Score=80.31  Aligned_cols=151  Identities=15%  Similarity=0.101  Sum_probs=106.7

Q ss_pred             ceecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +.+......+.. ++|++. +.........+.+++|+++.|++.||+|-|+++..+.++..+..+...+     ......
T Consensus       269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~-----~~~~~~  343 (438)
T COG2270         269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF-----LEGELD  343 (438)
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH-----ccccHH
Confidence            333344444554 688887 6677788889999999999999999999999999988888774333333     122222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL-HGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~  166 (226)
                      . ....++.+.+-.+..+..-.|..++.|+++-++..|+.+..++..++++|...+...+..|- |..+.....+..++.
T Consensus       344 f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl  422 (438)
T COG2270         344 F-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL  422 (438)
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence            2 22222222333344566677899999999999999999999999999999999988776653 545555555555553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.76  E-value=4.4e-07  Score=78.05  Aligned_cols=147  Identities=12%  Similarity=0.037  Sum_probs=91.2

Q ss_pred             ccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .|.+.+.+ ..|.+. +.........++..++.++.+++.||+|+|+.+..+..+..+..+.... .   ....+.....
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~~  295 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF-F---GGMKTASLIF  295 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH-H---HhhHHHHHHH
Confidence            34454454 478887 5667778888899999999999999999999988877766653222221 0   1122222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW-FGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~  166 (226)
                      ......+......+.......+..|.+.++.+  ..+....+|..++|.+.+.+.+. .+|+..+...+.+..+..
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        296 AFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence            22222222111122222344555566666554  34566789999999999998885 578877777666655543

>KOG0252|consensus

Probab=98.76  E-value=3.7e-08  Score=85.03  Aligned_cols=100  Identities=21%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhccc-cc
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP-GWIPLTIFCICFWISGYGI-LA  105 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~  105 (226)
                      ..+.......++.+.|++++|++.||+|||+++...+++..++.+.... ....+.+ .....+.+.....+.+.|- .|
T Consensus        85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~-s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP  163 (538)
T KOG0252|consen   85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGL-SVGTTSPLGVMMTLCFFRFLLGIGIGGDYP  163 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhcc-CCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence            3467778889999999999999999999999999988888885543222 1111222 2222222223223333332 48


Q ss_pred             hhhHHhhccCCcchhhhHHHHHH
Q psy10294        106 LPWMLMSEIFPVRIRGVACGICA  128 (226)
Q Consensus       106 ~~~~~~~e~~p~~~R~~~~~~~~  128 (226)
                      ...+.++|....+.||.-.+...
T Consensus       164 lSAtI~SE~an~~~RGa~iaavF  186 (538)
T KOG0252|consen  164 LSATIMSESANKKTRGAFIAAVF  186 (538)
T ss_pred             chHHHhhhhhhhccccceeEEEE
Confidence            88899999999999998777543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.75  E-value=2.3e-07  Score=80.07  Aligned_cols=131  Identities=13%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      ........+...++.+..+++.||+|||+.+.++..+..+.......     ..+.+.........+..... .......
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~  330 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-----ATTALEVVILKMLHAFEVPF-LLVGCFK  330 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            44555666777888899999999999999988877766663322222     12233222222222222111 1122334


Q ss_pred             HhhccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        110 LMSEIFPVRIRGVACGI-CAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       110 ~~~e~~p~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +..|..|++.|+++.+. .+....+++.+++.+.+++.+..|++..|.+.+++..+..
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT  388 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            66777888988887766 4667889999999999999999999998888888777665

>PRK09669 putative symporter YagG; Provisional

Probab=98.73  E-value=9.2e-08  Score=83.95  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHH-HHHHHHHHHHHHHHHHHhhcCC-
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK----FGKRPMS-LWSTGICFVFTIALAICSMNLH-   82 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~----~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~-   82 (226)
                      .+..|++.++.+ +|++. ..+....+..+...+..++.|+++||    +|||+.. +++.+...+.....+. ..... 
T Consensus        27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~-~p~~~~  105 (444)
T PRK09669         27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY-TPDFGA  105 (444)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh-CCCCCc
Confidence            345566666654 79987 66777888888889999999999998    7875554 4555555553322222 11100 


Q ss_pred             Cch-HHHHHHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hchhh
Q psy10294         83 WPG-WIPLTIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSITW-------FGLHG  153 (226)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~  153 (226)
                      ... .+......+....+.....| ..++.+|+. ++++|++..++...+..+|+.+++.+...+...       .+|+.
T Consensus       106 ~~~~~~~~~~~~l~~~~~t~~~ip-~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYTAINVP-YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcch-HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            111 11222222222222222222 235778887 568899888888877777777766544433332       35666


Q ss_pred             HHHHHHHHHHHhh
Q psy10294        154 TLFIYSFITGIGF  166 (226)
Q Consensus       154 ~~~~~~~~~~i~~  166 (226)
                      .+.+++++..+..
T Consensus       185 ~~~i~~ii~~v~~  197 (444)
T PRK09669        185 AMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666766665554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.71  E-value=2.6e-07  Score=82.78  Aligned_cols=147  Identities=17%  Similarity=0.089  Sum_probs=106.0

Q ss_pred             ccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ..+|.+.++ +|.+. .-++.....++++++|+++.+.+.+|+++++.+..+.+..++..+....     ..+.+.....
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-----~~~~~~~~~~  313 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-----SPSFWLALIA  313 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc-----chHHHHHHHH
Confidence            446777654 67765 4567888999999999999999999999999888887777764444444     2233333333


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +...+. ..........+...+..|++.||+..++..+....+..++..+.+.+.+.+|.+..+.+.++..++..
T Consensus       314 l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  314 LFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            333222 22223334456788999999999999999999999999999999999999998877766555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.70  E-value=2.1e-07  Score=82.48  Aligned_cols=120  Identities=8%  Similarity=0.029  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      .......+..+++.++.+++.||+|||+.+.++..+..+..+.............+.......+...+.+ ...+..+.+
T Consensus       270 ~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~-~~~~~~~am  348 (473)
T PRK10429        270 YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTA-LFWVLQVIM  348 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4445556778889999999999999999998887765552222221001111122222222222222222 233556778


Q ss_pred             hhccCC-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        111 MSEIFP-------VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       111 ~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      ++|..+       .|..|...|.......++..+++.+.+.+.+..|+
T Consensus       349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888854       34456677888888899999999999888876664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.68  E-value=6.5e-07  Score=76.34  Aligned_cols=134  Identities=13%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             eecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         11 SMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        11 ~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ....+.|.+.+ +.|.+. +.........++..++.++.+++.||+|||+.+..+.....+........... .......
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  302 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL-GLGSWAM  302 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHH
Confidence            34455676665 578876 55667777888889999999999999999998887766665522222220100 1112222


Q ss_pred             HHH-HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         89 LTI-FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus        89 ~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      ... ....+.+.+. ..+....+..|..| +.|+++.++.+.....++.+.+.+.+...+
T Consensus       303 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       303 IIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            221 2222222221 23445567778877 578999999888877655555555554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=98.68  E-value=1.4e-07  Score=82.84  Aligned_cols=133  Identities=14%  Similarity=0.060  Sum_probs=81.6

Q ss_pred             cHHHHHhh-cCCCchH-HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy10294         15 YLVEIFQT-FGVPLKS-EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        15 ~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      ..|.+.++ +|.+... .+......+..+++.++.+++.||+|+|+.+.++..++.+.......   ....+.+......
T Consensus       250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~---~~~~~~~~~~~~~  326 (448)
T PRK09848        250 SSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW---VSVWSLPVALVAL  326 (448)
T ss_pred             hheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH---cCchhHHHHHHHH
Confidence            34444444 4544322 22233334566788999999999999999999988776663333222   0111222222222


Q ss_pred             HHHHHHHhccccchhhHHhhccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294         93 CICFWISGYGILALPWMLMSEIFPV-------RIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      .+...+.+. ..+..+.+.+|..|.       |.+|...|+.+....++..+++.+.+.+.+..|+
T Consensus       327 ~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        327 AIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            222222222 234566677777764       3468889999999999999999988887776654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.68  E-value=1.6e-07  Score=80.25  Aligned_cols=159  Identities=18%  Similarity=0.262  Sum_probs=114.9

Q ss_pred             ccccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC--
Q psy10294          6 NSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL--   81 (226)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~--   81 (226)
                      +.++..+..++|.++++ ++.+. ++............+.-+.+|+++||+|.++...+....+.++...........  
T Consensus       231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~  310 (417)
T COG2223         231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH  310 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc
Confidence            44566778889999876 78887 666777777777888889999999999999999888888887444444411111  


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSF  160 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  160 (226)
                      ..+....+..+.......+.|.++ .+-+++..+|. +-|...|+..+.+.+|++..|...+...+..| +...|+++..
T Consensus       311 ~~~~~~~~~~~l~l~~~~G~GnGs-vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~  388 (417)
T COG2223         311 GGSFVVFVAVFLALFVFAGLGNGS-VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLA  388 (417)
T ss_pred             CcchHHHHHHHHHHHHHhccCcch-heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHH
Confidence            122333344444555555555543 44567777776 56888999999999999999999999988888 6677777777


Q ss_pred             HHHHhh
Q psy10294        161 ITGIGF  166 (226)
Q Consensus       161 ~~~i~~  166 (226)
                      +..++.
T Consensus       389 ~~~~a~  394 (417)
T COG2223         389 FYLVAL  394 (417)
T ss_pred             HHHHHH
Confidence            766665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.66  E-value=7.8e-07  Score=75.86  Aligned_cols=150  Identities=10%  Similarity=-0.021  Sum_probs=108.6

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ....|.+.+.++++. ++.........+..+.++..+++.+|+|+|+.++.+..++++....... .   .......+.+
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p-A---a~~~~y~~FL  108 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP-A---ASSKSYGFFL  108 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-h---hhhhhHHHHH
Confidence            356788888899998 7888888999999999999999999999999999999999983333221 0   1222222222


Q ss_pred             HHHHHHHHhccc-cchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hch
Q psy10294         92 FCICFWISGYGI-LALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW-------------------FGL  151 (226)
Q Consensus        92 ~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~g~  151 (226)
                      ..++..+.|.+. ......+++.+.|++....-+.+.+.++.+|..++|.+...+..+                   -.+
T Consensus       109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v  188 (422)
T COG0738         109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSV  188 (422)
T ss_pred             HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence            222333333333 244456888999998888889999999999999999998887662                   125


Q ss_pred             hhHHHHHHHHHHHhh
Q psy10294        152 HGTLFIYSFITGIGF  166 (226)
Q Consensus       152 ~~~~~~~~~~~~i~~  166 (226)
                      +.++...+....+..
T Consensus       189 ~~pYl~~~~~lvll~  203 (422)
T COG0738         189 QFPYLILAGLLVLLA  203 (422)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            666776666655544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.66  E-value=3.9e-07  Score=81.21  Aligned_cols=136  Identities=10%  Similarity=0.097  Sum_probs=93.6

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +...++.|.++++ .|.+. +.+.......+...+++++.|++.||+|||+.+..+..+..+.......  .....+.+.
T Consensus       276 ~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~  353 (495)
T PRK14995        276 VGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAM--TDFSTQQWQ  353 (495)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH--hcCCCchHH
Confidence            3445677877776 68887 6777788888889999999999999999999888777766553322222  111122222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      ......+.+.+.+... +.....+.+..|+++|+.+.++.+....+|+.+++.+.+.+.++
T Consensus       354 ~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        354 AWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223333333333222 33345666889999999999999999999999999888877653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.64  E-value=1.6e-06  Score=74.61  Aligned_cols=147  Identities=10%  Similarity=-0.044  Sum_probs=94.8

Q ss_pred             ecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         12 MRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        12 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ...+.|.+.++.|.+. +.........+...+..++.+++.||+|+|+.+..+.+...+.......     .++.+....
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~  298 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-----TTALPWLIV  298 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHH
Confidence            4456677777888886 5566666677778888899999999999999988887776663332222     122233333


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAI-NSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ...+.+...+.. .+....+..+. +++++++..+..... ..++..+++.+.+.+.+.+|+ ..++..+.+..+..
T Consensus       299 ~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        299 IQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            333333333322 23333456665 566678888877633 456678999999999999887 45665555555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.64  E-value=8.5e-07  Score=76.78  Aligned_cols=145  Identities=16%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             HHHHhhcCCCc-hHHHHHHHHH-HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q psy10294         17 VEIFQTFGVPL-KSEWVLVLTG-VLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCI   94 (226)
Q Consensus        17 ~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   94 (226)
                      |.+.++.|.+. +..+.....+ ...+++.++++++.||+|||+.+..+..+..+..+........ ..+.+........
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~  312 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            34445578876 3444443333 4578899999999999999998876666655422222110111 1122222222211


Q ss_pred             ---HHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         95 ---CFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        95 ---~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                         ..+.......+....+++|.+|.+.+    ++.+....++...++.+.+.+.+++||+..|...+.+..+..
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~  383 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGL  383 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence               11111111223344566677775554    444445566666667788899999999988888777776654

>TIGR01272 gluP glucose/galactose transporter

Probab=98.63  E-value=1.6e-06  Score=72.71  Aligned_cols=140  Identities=12%  Similarity=0.165  Sum_probs=93.5

Q ss_pred             eecccHHHHHhh---cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294         11 SMRPYLVEIFQT---FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus        11 ~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      ++..|.+.++++   +|++. +..........+..+|.++.+++.||+|+|+.+.++..+..+..+....     .. ..
T Consensus       158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~-~~  231 (310)
T TIGR01272       158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH-GY  231 (310)
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC-CH
Confidence            345677788864   47776 5667778888889999999999999999999888777766664332222     11 12


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYS  159 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  159 (226)
                      .....+...+.+.+ ...|.......|.+|++ .+++.++. ..+.+|+.+.|.+.+.+.|..|.+.++++..
T Consensus       232 ~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       232 VAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            22222222222222 23355556666777754 45666664 5677899999999999999888877766433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.62  E-value=1.1e-07  Score=83.05  Aligned_cols=162  Identities=10%  Similarity=0.101  Sum_probs=98.9

Q ss_pred             cccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc----ccCChHHHH-HHHHHHHHHHHHHHHHhhcCCCc-
Q psy10294         13 RPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVN----KFGKRPMSL-WSTGICFVFTIALAICSMNLHWP-   84 (226)
Q Consensus        13 ~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d----~~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~~-   84 (226)
                      ..|++.++.+ .|++. ..+.......+...+..++.|.++|    |+|||+..+ ++.+...+....++.....+... 
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            3455555554 68887 5566666777777888889999999    899877765 45555555433333300100011 


Q ss_pred             -hH-HHHHHHHHHHHHHhccccchhhHHhhccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhhH
Q psy10294         85 -GW-IPLTIFCICFWISGYGILALPWMLMSEIFP-VRIRGVACGICAAINSIVCFLVTKTYVTSITWF-------GLHGT  154 (226)
Q Consensus        85 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~  154 (226)
                       .. +.......+.........| ..++.+|+.+ +++|.+..+....+..+|..+...+.+.+.+..       +|+..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~-~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIP-YNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCc-hhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence             11 1122222222222222112 2457889987 578999999988888888877766666655443       46777


Q ss_pred             HHHHHHHHHHhhhhhhcccccccccceeEEEEecc
Q psy10294        155 LFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       155 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      ..+.+++..+..              ++..+..+|
T Consensus       180 ~~v~~iv~~v~~--------------~i~~~~~ke  200 (428)
T PF13347_consen  180 ALVLAIVGLVFF--------------LITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHh--------------hhhhheeee
Confidence            777777777766              666666777

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.60  E-value=6.5e-07  Score=77.47  Aligned_cols=138  Identities=9%  Similarity=-0.103  Sum_probs=83.9

Q ss_pred             ccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+.|.+++ +.|.+. +..+......++..++.++.++++||+|||+.+..+.....+................+.....
T Consensus       236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            34566654 467776 4455555566678889999999999999999988877665552222221010111112222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHG  153 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  153 (226)
                      ......+.+.. .+...... ...++++||+..+..+....++..+++.+.+.+.+..++..
T Consensus       316 ~~~~g~g~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        316 LSLYAFGIGLA-NAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHHHH-hhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            22222222221 12222233 23345889999999999999999999999888877767644

>TIGR00901 2A0125 AmpG-related permease

Probab=98.57  E-value=4.2e-07  Score=77.17  Aligned_cols=121  Identities=10%  Similarity=0.026  Sum_probs=74.7

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHH-HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCC-----
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTG-VLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLH-----   82 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-----   82 (226)
                      +....+.|.+.++.|.+. +......... +..+++.++++++.||+|||+.+..+.++..+..........+.+     
T Consensus       226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T TIGR00901       226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT  305 (356)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            345567788888888876 4344444434 567889999999999999999988877776653222221000100     


Q ss_pred             -CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHH
Q psy10294         83 -WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAIN  131 (226)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~  131 (226)
                       ...+...........+.+ ...+....+.+|.+|+++||+..|+.+...
T Consensus       306 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       306 FPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             cchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence             111222222222222222 234556778999999999999999887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.56  E-value=5.2e-07  Score=87.83  Aligned_cols=129  Identities=10%  Similarity=0.007  Sum_probs=85.1

Q ss_pred             ecccHHHHHh-hcCCCch--HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         12 MRPYLVEIFQ-TFGVPLK--SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        12 ~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ...++|.+.+ .+|.+..  ..+......++.++++++.+++.||+++|+.+.++.++.++..+....     ....+..
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  325 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT-----APSLASV  325 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH-----hhhHHHH
Confidence            3445666664 4677653  456667778888999999999999999998887777766653333333     1122222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI  146 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (226)
                      +....+.+.+.+. ..+....++.|..|++.||++.|+.+....++..+++.+...+.
T Consensus       326 ~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        326 LVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222 23345578889999999999999999988888877766655443

>PRK11462 putative transporter; Provisional

Probab=98.56  E-value=1.3e-06  Score=77.22  Aligned_cols=154  Identities=12%  Similarity=0.110  Sum_probs=91.5

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK----FGKRPMSL-WSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~----~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .+..|+..++.+ .|++. ..+....+.-+...+..++.|.++||    +|||+..+ ++.+...+....++. ......
T Consensus        27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~-~p~~s~  105 (460)
T PRK11462         27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS-TPDLSM  105 (460)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh-CCCCCc
Confidence            445567766665 68887 56667777778888999999999996    68876665 454555553333332 111011


Q ss_pred             ch-H-HHHHHHHHHHHHHhccccchhhHHhhccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhh
Q psy10294         84 PG-W-IPLTIFCICFWISGYGILALPWMLMSEIFP-VRIRGVACGICAAINSIVCFLVTKTYVTSITWF-------GLHG  153 (226)
Q Consensus        84 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~  153 (226)
                      .. . +......++..++.....| -.++.+|+.+ +++|++..++-..++.+|..+++.+...+.+..       +|+.
T Consensus       106 ~~~~~y~~~~~~~~~~~~t~~~ip-y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~  184 (460)
T PRK11462        106 NGKMIYAAITYTLLTLLYTVVNIP-YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG  184 (460)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            11 1 1222222222222222222 2357778876 799999999999888888877766655444443       3555


Q ss_pred             HHHHHHHHHHHhh
Q psy10294        154 TLFIYSFITGIGF  166 (226)
Q Consensus       154 ~~~~~~~~~~i~~  166 (226)
                      ...+++++..+..
T Consensus       185 ~~~i~~ii~~i~~  197 (460)
T PRK11462        185 GIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.56  E-value=4.6e-07  Score=79.15  Aligned_cols=155  Identities=15%  Similarity=0.090  Sum_probs=102.5

Q ss_pred             ccceecccHHHHHh-hcC----CCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294          8 SFVSMRPYLVEIFQ-TFG----VPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSMN   80 (226)
Q Consensus         8 ~~~~~~~~~~~~~~-~~g----~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~   80 (226)
                      ++|.+...+..++. +.+    +|. ++.-....+....-...+++||++||+ |+|+.+..+.++..+.-+.+....  
T Consensus        36 syYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--  113 (498)
T COG3104          36 SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--  113 (498)
T ss_pred             hhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--
Confidence            45555544444443 334    665 444444455555567788999999995 999999999999888433333300  


Q ss_pred             CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy10294         81 LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPV--RIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIY  158 (226)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  158 (226)
                       ........+.+.....+.| ..-+.+..++.|++|+  ..|..+.++.++..++|++++|.+.+++.++.||+..|-..
T Consensus       114 -~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a  191 (498)
T COG3104         114 -VSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA  191 (498)
T ss_pred             -cccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence             0112222222222223322 2346666789999876  23777888889999999999999999999999999888877


Q ss_pred             HHHHHHhh
Q psy10294        159 SFITGIGF  166 (226)
Q Consensus       159 ~~~~~i~~  166 (226)
                      ++-..++.
T Consensus       192 avGm~~gl  199 (498)
T COG3104         192 AVGMIIGL  199 (498)
T ss_pred             HHHHHHHH
Confidence            77666665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.56  E-value=3e-06  Score=73.61  Aligned_cols=137  Identities=16%  Similarity=0.070  Sum_probs=95.8

Q ss_pred             ecccHHHHHhhcC-CCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHH
Q psy10294         12 MRPYLVEIFQTFG-VPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        12 ~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~   88 (226)
                      ...|.+.+.++.| .+. .......+..+..++.-...+++..|+|-|++++++.+..++ ..+....     ..+.+..
T Consensus       226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~-----~~~~~~~  300 (400)
T PF03825_consen  226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF-----SDPWPFI  300 (400)
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-----cCCcHHH
Confidence            4556777888877 554 344445566777888899999999999999999999999888 4333222     1233322


Q ss_pred             HHHHH----HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhH
Q psy10294         89 LTIFC----ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAI-NSIVCFLVTKTYVTSITWFGLHGT  154 (226)
Q Consensus        89 ~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~  154 (226)
                      .....    ..+..++... .....|+.|..|++.|+++.++.... ..+|..+++.+.+++.+++|.+..
T Consensus       301 ~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  301 VALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            22222    2333333222 34456899999999999999988765 568999999999999998875543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.53  E-value=9e-07  Score=76.15  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             ccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+.|.+. +++|.+. +.........+..+++.++.+++.||+|||+.+..+.....+.......     ....+.....
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  298 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL-----SPSHAVSLFG  298 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            3345555 4568876 4556667778888999999999999999999988887776663333333     1112222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIY  158 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  158 (226)
                      ......+.+.+..   .....+..|.+.|+   +..+....++..+++.+.+++.+++|+.......
T Consensus       299 ~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~  359 (392)
T PRK10473        299 ITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLI  359 (392)
T ss_pred             HHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            2222222222221   12344566665554   4445555677777888888888888875433333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.52  E-value=1e-06  Score=78.04  Aligned_cols=154  Identities=12%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc----ccCChH-HHHHHHHHHHHHHHHHHHHhhcCC
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVN----KFGKRP-MSLWSTGICFVFTIALAICSMNLH   82 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d----~~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~   82 (226)
                      ..+..|++.++.+ .|++. ..+....+..+...+..++.|.++|    |+|||+ .++++.+.+.+.....+. . .+.
T Consensus        23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~-~-p~~  100 (473)
T PRK10429         23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS-A-HLF  100 (473)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc-C-CCC
Confidence            3445677777766 59887 6677777788888999999999999    569955 445566555553322222 1 111


Q ss_pred             Cch--HH-HHHHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ch
Q psy10294         83 WPG--WI-PLTIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-------GL  151 (226)
Q Consensus        83 ~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~  151 (226)
                      ...  .. ......+...++.....| ..++.+|+. ++++|.+..+....+..+++.+.+.+...+.+..       +|
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~t~~~ip-~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~  179 (473)
T PRK10429        101 EGTAQYVFVCVTYILWGMTYTIMDIP-FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGF  179 (473)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHcch-HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence            111  11 111112222222222112 235778988 5899999988877767776666554443332222       34


Q ss_pred             hhHHHHHHHHHHHhh
Q psy10294        152 HGTLFIYSFITGIGF  166 (226)
Q Consensus       152 ~~~~~~~~~~~~i~~  166 (226)
                      +....+.+++..+..
T Consensus       180 ~~~~~i~~~~~~~~~  194 (473)
T PRK10429        180 QMFTLVLIAFFIVST  194 (473)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444445555544443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.50  E-value=9.8e-07  Score=78.23  Aligned_cols=144  Identities=9%  Similarity=-0.094  Sum_probs=86.3

Q ss_pred             HHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccC-----ChHHHHHHHHHHH-HHHHHHHHHhhcCCCchHHH
Q psy10294         16 LVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFG-----KRPMSLWSTGICF-VFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        16 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~G-----rr~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~   88 (226)
                      .|.+.+++|++. +.+.......+...+-.+ +|+++||++     ||+.++.+.++.. +.......     .......
T Consensus        49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~-----~~~~~~~  122 (468)
T TIGR00788        49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG-----KVSSAKV  122 (468)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc-----ccchHHH
Confidence            334445689987 555666666666666555 999999997     6676666665542 22111111     1111111


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACG---ICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ...................-.+..|..+ +.+..+.+   +......+|..+++.+.+.+.++++|+..+++.+.+.++.
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence            1112222222233334455567789888 44444333   3333445788999999999999999999988888777666


Q ss_pred             h
Q psy10294        166 F  166 (226)
Q Consensus       166 ~  166 (226)
                      .
T Consensus       202 ~  202 (468)
T TIGR00788       202 L  202 (468)
T ss_pred             H
Confidence            4

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11043 putative transporter; Provisional

Probab=98.49  E-value=4.8e-06  Score=71.89  Aligned_cols=136  Identities=18%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ....+.|.+.++.|.+. +.........+...++.+..+++.||+|||+..........+................+...
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL  300 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence            34456788888888886 45555556667778899999999999999987765555544422221110000011222222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      ........+.+. ..+.......|..| ++|+++.|+.+.....++..++.+.+.+.+.
T Consensus       301 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        301 IPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            222222222222 23444445556666 5799999999998888888888888777654

>PRK11462 putative transporter; Provisional

Probab=98.49  E-value=2.4e-06  Score=75.54  Aligned_cols=117  Identities=11%  Similarity=0.073  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      .......+..+++.+++++++||+|||+.+..+..+..+..+....  .. ..............+ .......+..+.+
T Consensus       267 ~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~g-~~~~~~~~l~~~m  342 (460)
T PRK11462        267 AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF--VP-MQASITMFVFIFVIG-VLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4455667777889999999999999999877555444332222222  11 111112222222222 2222234555677


Q ss_pred             hhccCC-----cchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        111 MSEIFP-----VRIRG--VACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       111 ~~e~~p-----~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      .+|..+     +.+|.  ...+.......++..+++.+.+.+.+..|+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777755     22444  444555678889999998888887766554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.49  E-value=6e-06  Score=71.46  Aligned_cols=146  Identities=12%  Similarity=0.018  Sum_probs=88.4

Q ss_pred             cccH-HHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYL-VEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+. |.+.++.|.+. +.........++..++.++.+++.||.+| +.+..+..+.......... .   ....+....
T Consensus       236 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~-~---~~~~~~~~~  310 (394)
T PRK10213        236 FTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTL-W---GSDKIVATG  310 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHH-H---hhhHHHHHH
Confidence            3444 66667788887 45666777888899999999999999644 4433333333322111111 0   122233332


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      .....+.+.+. ..+....++.+..|+ .+++..+.......++..+++.+.+.+.+..|++..+...+.+..+.
T Consensus       311 ~~~l~G~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        311 VAIIWGLTFAL-VPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            23333323322 223333456677774 46677777777888999999999999999888877666655544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.46  E-value=1.3e-06  Score=73.29  Aligned_cols=127  Identities=17%  Similarity=0.260  Sum_probs=86.1

Q ss_pred             ceecccHHHH-HhhcCCC-c-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294         10 VSMRPYLVEI-FQTFGVP-L-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus        10 ~~~~~~~~~~-~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      .....+.|.+ .+++|.+ . +.........+...++.++.+++.||+|+|+..........+....... ... ..+..
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~  300 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL-LPF-SSSPV  300 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC-SHH-HCHHH
T ss_pred             HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-HHH-hhhHH
Confidence            3456778887 4567888 4 5566677888888899999999999999988877766666553332222 000 11122


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVT  139 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~  139 (226)
                      .........+.+.+ ...+....+..|..|+++|+++.|+.+....+++.++|
T Consensus       301 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            22222233333222 23466677899999999999999999999999988876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.43  E-value=1e-05  Score=71.01  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH-HHHHHHHHHHHhccccchh
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP-LTIFCICFWISGYGILALP  107 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  107 (226)
                      ............+++.++...+.+|+|||+.+.++.++..+.....++.    +..+... ++..+....+.+ ...+++
T Consensus       274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~----~~~~~~l~~~~~~i~~~g~~-~~~~l~  348 (467)
T COG2211         274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT----PAGSVVLIVVALIIAGVGTG-IANPLP  348 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh----cCcchHHHHHHHHHHHHHhh-cccccc
Confidence            3444555556666778999999999999999999988888854444441    1122222 222233333333 345789


Q ss_pred             hHHhhccCC-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        108 WMLMSEIFP-------VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       108 ~~~~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      |.+++|.-+       .|.-|...+....+..++..++..+.++..+..|+
T Consensus       349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999998843       45556677788888889999999888888877653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.43  E-value=4.9e-06  Score=70.22  Aligned_cols=155  Identities=13%  Similarity=0.089  Sum_probs=103.7

Q ss_pred             cccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10294          5 FNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSMNLH   82 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~   82 (226)
                      |...+|++..|+|.++.|.|+|. ++++..+...+.+.+.++..-.+.+|. ++|+........+.+..++..+ .   +
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~---P  295 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-A---P  295 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-h---h
Confidence            45667888899999999999998 788888999999999999999999975 4566666555555554444433 0   1


Q ss_pred             CchHHHHHHHHHHHHHHhccccchhhHHhhc-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHH
Q psy10294         83 WPGWIPLTIFCICFWISGYGILALPWMLMSE-IFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSF  160 (226)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  160 (226)
                      .......  ...++.+.+. .-+..-+.+.+ .-.+++-+.-.++.+.++++....+|++.+++.|..| |+..+.....
T Consensus       296 ~~~~~lw--~~llG~G~G~-~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~  372 (395)
T COG2807         296 GQLPILW--ALLLGLGQGG-AFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLAL  372 (395)
T ss_pred             hhHHHHH--HHHHhCccch-HHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence            1122222  1222222221 22343344444 3455667777889999999999999999999998775 6655555555


Q ss_pred             HHHHhh
Q psy10294        161 ITGIGF  166 (226)
Q Consensus       161 ~~~i~~  166 (226)
                      ......
T Consensus       373 ~~i~m~  378 (395)
T COG2807         373 ATLLML  378 (395)
T ss_pred             HHHHHH
Confidence            554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.43  E-value=1.6e-05  Score=67.21  Aligned_cols=145  Identities=13%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             ccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy10294         14 PYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        14 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      +|.-.++++.|++. +.............+...+.|.++||+|||+..+..+++..+..+..       +.++...+..-
T Consensus        55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-------~~~~~~~L~~G  127 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-------HSSNYPVLLLG  127 (354)
T ss_pred             chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-------hccccHHHHHH
Confidence            44445566778887 55666667777778888899999999999999887777776643322       22344444444


Q ss_pred             HHHHHHHhccccch--hhHHhhcc----CCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHH
Q psy10294         93 CICFWISGYGILAL--PWMLMSEI----FPVRIRGVACGICA-AINSIVCFLVTKTYVTSITWFGL--HGTLFIYSFITG  163 (226)
Q Consensus        93 ~~~~~~~~~~~~~~--~~~~~~e~----~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~  163 (226)
                      .++++....-..+.  .| ++.|.    +|++..+...+... ..+.+..+.+..+...+.++.+.  ..+|..-..+..
T Consensus       128 RvlgGiaTSLLfS~FEsW-~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~  206 (354)
T PF05631_consen  128 RVLGGIATSLLFSAFESW-MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA  206 (354)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            44433332222221  24 45565    45554444444444 23445556666666666776654  556666555555


Q ss_pred             Hhh
Q psy10294        164 IGF  166 (226)
Q Consensus       164 i~~  166 (226)
                      +..
T Consensus       207 ~~~  209 (354)
T PF05631_consen  207 VAA  209 (354)
T ss_pred             HHH
Confidence            554

>KOG2504|consensus

Probab=98.42  E-value=2.7e-07  Score=82.45  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             cccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294          7 SSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGK--RPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr--r~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      .+......++|.+.++.+++. +.....++.++..+++-++.|+++|+...  +....++.++..+..+....      .
T Consensus       312 ~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~------~  385 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF------A  385 (509)
T ss_pred             HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH------h
Confidence            345566778899999999988 77888899999999999999999999883  44445555555553333333      2


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFIT  162 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  162 (226)
                      ..+..+...+.+.+.............+.|+.+.+.-..+.|+...+..++..++|++.+.+.+..| |...|+..+...
T Consensus       386 ~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~  465 (509)
T KOG2504|consen  386 TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCF  465 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHH
Confidence            3334444444444443334445555678899999999999999999999999999999998888777 766777777766


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      +++.
T Consensus       466 ~~s~  469 (509)
T KOG2504|consen  466 LLSA  469 (509)
T ss_pred             HHHH
Confidence            6664

>TIGR00889 2A0110 nucleoside transporter

Probab=98.42  E-value=1.8e-06  Score=75.34  Aligned_cols=61  Identities=16%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             cceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHH
Q psy10294          9 FVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFV   69 (226)
Q Consensus         9 ~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i   69 (226)
                      .....++++.++ ++.|++. +.++......++..+++++.|.++||+|| |+.+..+..+..+
T Consensus        18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~   81 (418)
T TIGR00889        18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGAL   81 (418)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            334445555555 4589988 77899999999999999999999999965 6677766666655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10133 L-fucose transporter; Provisional

Probab=98.42  E-value=4.7e-06  Score=73.25  Aligned_cols=141  Identities=13%  Similarity=0.046  Sum_probs=92.1

Q ss_pred             cccHHHHH-h-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         13 RPYLVEIF-Q-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        13 ~~~~~~~~-~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ..|.+.+. + ..|.+. +.........++..+|.++++++.||+|||+++..+..+..+.......     ... ....
T Consensus       278 ~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----~~~-~~~~  351 (438)
T PRK10133        278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----AGG-HVGL  351 (438)
T ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----cCC-hHHH
Confidence            34566553 4 468887 6677788889999999999999999999999988877666553322222     111 1222


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFIT  162 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  162 (226)
                      ..+...+.+.+. ..|..+....|.+|++ .+++.++... ..+++.+.+.+.+.+.+..| -+..+++.....
T Consensus       352 ~~~~l~glg~~~-i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        352 IALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            223333333332 3466666777877754 5677777653 45678888889898888877 666666544433

>PRK10054 putative transporter; Provisional

Probab=98.42  E-value=3.3e-06  Score=73.08  Aligned_cols=128  Identities=10%  Similarity=-0.013  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHh
Q psy10294         32 VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLM  111 (226)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (226)
                      ......+.........+.+.||.++|+.+..+..+..+....... .   .++.+...........+. ....|....++
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~  323 (395)
T PRK10054        249 VLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF-S---GNSLLLWGMSAAVFTVGE-IIYAPGEYMLI  323 (395)
T ss_pred             HHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH-c---chHHHHHHHHHHHHHHHH-HHHHhhHHHHH
Confidence            333444444555678889999999999888777666553322222 0   112222222222222222 12234556678


Q ss_pred             hccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294        112 SEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       112 ~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      .|..|++.|++..+..+ ...+|..++|.+.+.+.++.|....+++.+....+.
T Consensus       324 ~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~  376 (395)
T PRK10054        324 DHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAA  376 (395)
T ss_pred             HHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence            89999999999988654 566899999999999999998776666655554444

>KOG0255|consensus

Probab=98.41  E-value=9.1e-06  Score=72.82  Aligned_cols=116  Identities=16%  Similarity=0.235  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhh
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPW  108 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (226)
                      ........+.....+....+...|++|||.....+..+..+..+.... .... ...+...........+.+.+.... +
T Consensus       352 ~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~  428 (521)
T KOG0255|consen  352 IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGW-LPDD-LGGWLHWILPLLGKFFIGSAFNLI-F  428 (521)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-hhcc-chhHHHHHHHHHHHHHHHHHHHHH-H
Confidence            344455555577788888899999999999999988888874444333 1111 111123333333334444444444 7


Q ss_pred             HHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        109 MLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       109 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      .+.+|.+|+..|+.+.+.......+++.++|.+......
T Consensus       429 ~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  429 LYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999988654443

>PRK09669 putative symporter YagG; Provisional

Probab=98.41  E-value=5.8e-06  Score=72.59  Aligned_cols=116  Identities=14%  Similarity=0.238  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHh
Q psy10294         32 VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLM  111 (226)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (226)
                      ......+..+++.+++++++||+|||+.+.++..+..+.......  .. ..+.+.......+.+.+. ....+..+.++
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~g~~~-~~~~~~~~am~  344 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF--IP-PSNVWLIFALNILFNFIQ-NLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hC-cchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            334445666788889999999999999998877665542222222  11 112222222222222222 23446778888


Q ss_pred             hccCC-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        112 SEIFP-------VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       112 ~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      +|..+       .+..|...+.......++..+++.+.+.+.+..|+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88875       34456667888888899999999999988887765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.39  E-value=3.8e-06  Score=71.69  Aligned_cols=126  Identities=15%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             cccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         13 RPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        13 ~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ..+.|.++. +.|.+. +.........+...++.++.+++.||+|||+.+..+..+..+..+........ +...+....
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  292 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-DLGFWALVV  292 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHH
Confidence            334455554 468876 56677778888889999999999999999999888877655422211110000 111122222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHH-HHHHHHHHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINS-IVCFLVTKT  141 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~~~~~~~~~  141 (226)
                      .........+ ...+....+..|..| +.|+++.++.+.... ++..+++.+
T Consensus       293 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        293 GVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222 122223345667766 789999988766543 444444444

>KOG4686|consensus

Probab=98.39  E-value=1.4e-06  Score=71.45  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             HHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHHHHHH
Q psy10294         16 LVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        16 ~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      -|.++++ +|++. ++....+.....+.+.+++.|.++||+||+...+.+..+..+ .=....+    +..+++....++
T Consensus       287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~l  362 (459)
T KOG4686|consen  287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFL  362 (459)
T ss_pred             hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHH
Confidence            4555554 89998 666677777777888999999999999999888776666555 2112222    124455444433


Q ss_pred             HHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294         93 CICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      .+..-.    .....|..++-+.|.++-|++.|+++...++|-.+.|.+.+.+.+.-|
T Consensus       363 GLsysl----lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  363 GLSYSL----LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             hhhHHH----HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            322111    122356677788899999999999999999999999999998887654

>KOG2816|consensus

Probab=98.37  E-value=2.1e-06  Score=75.77  Aligned_cols=131  Identities=10%  Similarity=0.132  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccC
Q psy10294         36 TGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIF  115 (226)
Q Consensus        36 ~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  115 (226)
                      .++..++.++..|.++||+|||..+......+.+-.....+       ..++.+..... .+++. ...+....+++|..
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~-------~~~~~~~~~~l-~g~~~-~~~s~~~a~vadis  141 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF-------QGYWFFLLLGL-SGGFS-AIFSVGFAYVADIS  141 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH-------HHHHHhhhccc-ccchh-hhhhhhhhheeecc
Confidence            46677888999999999999999999988888873333333       11333222122 11211 23345667899999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhhhhhhcccccccccceeEEEEecc
Q psy10294        116 PVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       116 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      ..+.|....|+.......+..++|...+.+.+..|.-..+.+..+...+..              +...+++||
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~--------------~y~~~~l~E  201 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSL--------------LYMLLFLPE  201 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--------------HHHhhcccc
Confidence            999999999999999999999999999999998888778888888777777              777788899

>KOG2532|consensus

Probab=98.37  E-value=2.5e-06  Score=75.41  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=106.5

Q ss_pred             cccccccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCCh--------H-HHHHHHHHHHHHH
Q psy10294          3 PGFNSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKR--------P-MSLWSTGICFVFT   71 (226)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr--------~-~~~~~~~~~~i~~   71 (226)
                      ++.+.+.+.+..|+|+++++ +|++. +.++.+++..+.+.+..+++|.++||.-+|        | .-.++..+.+++.
T Consensus       268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l  347 (466)
T KOG2532|consen  268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFL  347 (466)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHH
Confidence            34566778889999999987 78888 778999999999999999999999987552        2 2223333333333


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy10294         72 IALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIF-PVRIRGVACGICAAINSIVCFLVTKTYVTSIT---  147 (226)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---  147 (226)
                      +.+.+  .. ....+..+.++.......+.....   .+.+-.- .++.-+..+|+.+....+.++++|.+.+.+.+   
T Consensus       348 ~~l~~--~~-~~~~~~a~~~l~~~~~~~g~~~~G---f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t  421 (466)
T KOG2532|consen  348 LVLAF--TS-DEHRLLAVILLTIAIGLSGFNISG---FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNT  421 (466)
T ss_pred             Heeee--cC-CCcchHHHHHHHHHHHHcccchhh---hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCC
Confidence            22222  11 112233333333333333222211   2333333 56778999999999999999999999888773   


Q ss_pred             hhchhhHHHHHHHHHHHhh
Q psy10294        148 WFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       148 ~~g~~~~~~~~~~~~~i~~  166 (226)
                      ...|+..|++.+++.++..
T Consensus       422 ~~eW~~VF~i~a~i~~~~~  440 (466)
T KOG2532|consen  422 REEWRIVFLIAAGILIVGN  440 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3479999999998888876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.37  E-value=5.4e-06  Score=80.92  Aligned_cols=148  Identities=13%  Similarity=0.009  Sum_probs=93.9

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh---------
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSM---------   79 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~---------   79 (226)
                      .+..++|.+.++ +|.+. ...+......++.++|+++.++++|+.++++.+..+.++..+..+.......         
T Consensus       243 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  322 (1140)
T PRK06814        243 VVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQL  322 (1140)
T ss_pred             HHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence            344567887766 68776 6677788889999999999999999888777655555444442221111000         


Q ss_pred             ------cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh
Q psy10294         80 ------NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT-WFGLH  152 (226)
Q Consensus        80 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~  152 (226)
                            ......+...+...+++.+.+ ...+...+++.+..|++.||++.|+.+....++..+++.+.+.+.+ ..+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  401 (1140)
T PRK06814        323 KSILVFLSKRHGWRILIDLFGLAAAGG-LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP  401 (1140)
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHHH-HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence                  000222322222222222222 2333456788899999999999999999999999999988887764 33444


Q ss_pred             hHHHHHH
Q psy10294        153 GTLFIYS  159 (226)
Q Consensus       153 ~~~~~~~  159 (226)
                      ..+++.+
T Consensus       402 ~~~~~~~  408 (1140)
T PRK06814        402 WIILFIA  408 (1140)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.36  E-value=1.6e-05  Score=68.97  Aligned_cols=130  Identities=11%  Similarity=-0.036  Sum_probs=78.6

Q ss_pred             ccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTV-NKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~-d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+.|.+.++.+.+. +..+......+....+....+.+. ||++.|+.+..+..+..+.......     .+..+.....
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~  303 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM-----VSNLQQLFTL  303 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHH
Confidence            45677777754444 445555555555554444445555 4566666666666555543322222     1122222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF  149 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (226)
                      ......+.+ ...+....++.|..|++.||++.|+.+....++..++|.+.+.+.++.
T Consensus       304 ~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        304 ICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            222222222 223444567889999999999999999999999999999999998874

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.35  E-value=6.7e-06  Score=71.86  Aligned_cols=140  Identities=17%  Similarity=0.241  Sum_probs=94.5

Q ss_pred             ccceecccHHHHHhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294          8 SFVSMRPYLVEIFQT-FGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      +........+++.++ .+.+...........+..+++.++.++++||+|||+.+..+..+..+.........   ..+.+
T Consensus       240 ~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~~~~  316 (428)
T PF13347_consen  240 AFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---PGSPW  316 (428)
T ss_pred             hhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---hhhHH
Confidence            333444455666655 45444445566677888899999999999999999999999999888444333311   12333


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPV-------RIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      .........+.+.+ .....++.+.+|+.+.       +..|...|+......++..+++.+.+.+.+..|+
T Consensus       317 ~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  317 LVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            33333333333333 3446777888898763       4467888888889999999999988887776554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.25  E-value=2.9e-06  Score=71.98  Aligned_cols=122  Identities=18%  Similarity=0.269  Sum_probs=75.5

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +.+..+.|.+.++ +|.+. +.........+...++.++.++++||+|||+....+............. ..........
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  320 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL-GLVSPLSLAV  320 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh-cCCCcchHHH
Confidence            3445667777765 68876 5566677778888899999999999999998877666555442222222 1110002222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHH
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIV  134 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~  134 (226)
                      ..........+.+.+. +..+.+++|..| ++||++.|+.+..+++|
T Consensus       321 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       321 FIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            2222233333333333 345567788887 68999999988776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.24  E-value=6.3e-05  Score=65.08  Aligned_cols=143  Identities=10%  Similarity=0.064  Sum_probs=88.8

Q ss_pred             cHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy10294         15 YLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIF   92 (226)
Q Consensus        15 ~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
                      ..|.+.+ .+|.+. +.+.......++.+++++..+++.||.++|+.+..+... .+.......     ..+.+......
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~-----~~~~~~~~~~~  300 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMAL-----QHSLLPAYPLL  300 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHH-----HhHHHHHHHHH
Confidence            3444444 368777 667777888889999999999999999999877766433 222212222     11222222222


Q ss_pred             HHHHHHHhccccchhhHHhhccCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         93 CICFWISGYGILALPWMLMSEIFPVRI-RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ...+.+.+... +...+...|..|++. ||++.++.+....++..++..+...+ ...|-+..+.+.+...++.
T Consensus       301 ~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  372 (393)
T PRK11195        301 ILIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence            22222222222 223345667766654 79999999999999999988887754 5667776665544444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.20  E-value=5e-06  Score=72.01  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      ...+..-+...+.-.+..++.+|+|-|+.++++..+..+=......     .++.+.....-.+...-..... ....-|
T Consensus       263 ~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~-----~~~~~~i~~~klLH~~e~~l~l-va~fkY  336 (412)
T PF01306_consen  263 YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF-----ATNPWVISLIKLLHALEFPLLL-VAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------SHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh-----hcchHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3455556666778888899999999999999999998882222222     1344444443344333333222 223458


Q ss_pred             hhccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        111 MSEIFPVRIRGVACGIC-AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +++.+|+|..++...+. +....++..+.+...+.+.|++|.+.++++.+.+.+...
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~  393 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT  393 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence            99999999999999886 566778999999999999999999989998888877665

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.20  E-value=7.4e-05  Score=65.15  Aligned_cols=136  Identities=9%  Similarity=0.042  Sum_probs=85.8

Q ss_pred             cccHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         13 RPYLVEIFQTFGVPL---KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      ..|++.+.++.+.+.   ..............+|.++++++.||+++|+++.+...++.+..+....     .. +....
T Consensus       252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-----~~-~~~~~  325 (410)
T TIGR00885       252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-----AG-GHVGL  325 (410)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----cC-ChHHH
Confidence            456677776543222   1222344445667899999999999999999988887777774433333     11 22223


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------chhhHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF------GLHGTLFI  157 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~  157 (226)
                      ..+...+.+.+..+ |..+....+..+++.+..+.++....  +|+.+.|++.+.+.|..      +.+..|++
T Consensus       326 ~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~  396 (410)
T TIGR00885       326 YCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL  396 (410)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHH
Confidence            33333333333333 77778888888877665555555433  89999999999999854      35555554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.18  E-value=0.00011  Score=62.22  Aligned_cols=150  Identities=15%  Similarity=0.059  Sum_probs=109.8

Q ss_pred             cceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294          9 FVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus         9 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +.++.+.++++.+++|++. .....+++..+...+.+++..++..|+|.++.+..+.++..+....=..      .....
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~------~~~~~  101 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL------GGLPL  101 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc------ccHHH
Confidence            4566788999999999998 7788899999999999999999999999999988777776552221111      12222


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-GLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~  166 (226)
                      .+....+.+.+.+.+ +......+-|-||.+ -+..+|++...-.+++.+++.+...+.++. +||......+...++..
T Consensus       102 L~~gt~l~G~gIav~-nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl  179 (395)
T COG2807         102 LFLGTLLAGAGIAVI-NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL  179 (395)
T ss_pred             HHHHHHHHHhhHHHH-HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence            222222222222222 234456777888876 588899999999999999988888888777 79999988888888775

>TIGR00788 fbt folate/biopterin transporter

Probab=98.15  E-value=1.4e-05  Score=70.98  Aligned_cols=128  Identities=13%  Similarity=-0.007  Sum_probs=89.8

Q ss_pred             hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH--HhhcCC---CchHHHHHHHHHH
Q psy10294         22 TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAI--CSMNLH---WPGWIPLTIFCIC   95 (226)
Q Consensus        22 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~---~~~~~~~~~~~~~   95 (226)
                      ..|.+. +.+......+++.+++....+.+.+|++.|+++.++.++..+.......  ...+..   ...+.......+.
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            467777 6677777788899999999999999999999999888887763322110  001100   1111222222233


Q ss_pred             HHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294         96 FWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus        96 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      ....+....+. ..+++|..|++.+|+..++.....+++..+++.+.+.+.++.|
T Consensus       362 ~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       362 EVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33334444444 4688899999999999999999999999999999998888877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2325|consensus

Probab=98.09  E-value=4.4e-05  Score=67.30  Aligned_cols=114  Identities=17%  Similarity=0.035  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccch
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFV-FTIALAICSMNLHWPGWIPLTIFCICFWISGYGILAL  106 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (226)
                      -+++.....++..++++++|+...|.++ |+.++.|.+++++ .++-... ..  .......+.+...+..+.+.+....
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l-~~--~~~~~~y~mL~~R~l~Gvg~~n~a~  149 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLAL-AY--VPNGVKYLMLVARILTGVGVGNFAV  149 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHH-Hh--cccchHHHHHHHHHHcCcCcccHHH
Confidence            4688888999999999999999999996 6677778888777 2222122 11  1121333444444444445444455


Q ss_pred             hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        107 PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTS  145 (226)
Q Consensus       107 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      .-.|+++...++.|.++.+.......++..++|.+....
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            567899988888889888888776677777777665544

>PRK09848 glucuronide transporter; Provisional

Probab=98.07  E-value=7.5e-05  Score=65.62  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             ecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc----CChHHH-HHHHHHHHH
Q psy10294         12 MRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF----GKRPMS-LWSTGICFV   69 (226)
Q Consensus        12 ~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~----Grr~~~-~~~~~~~~i   69 (226)
                      ...|++.++++ .|++. ..+....+..+...+..++.|+++||.    |||+.. +++.+...+
T Consensus        27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~   91 (448)
T PRK09848         27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI   91 (448)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence            34556666665 68887 677888888999999999999999996    777765 444444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.06  E-value=0.0003  Score=64.90  Aligned_cols=157  Identities=15%  Similarity=0.076  Sum_probs=95.9

Q ss_pred             cceecccHHHHH-hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcC-CCc
Q psy10294          9 FVSMRPYLVEIF-QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSMNL-HWP   84 (226)
Q Consensus         9 ~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~-~~~   84 (226)
                      +|++..-+..++ +.+|.+. .+...........-+.++++|+++|+ +||++.+.++.++..+............ ...
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~   82 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP   82 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence            455554444444 4467776 44444445555556778888999995 6999999988888776222222201100 001


Q ss_pred             hHH--HHHHHHHHHHHHhccccchhhHHhhccCCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chh
Q psy10294         85 GWI--PLTIFCICFWISGYGILALPWMLMSEIFPVR---IRGVACGICAAINSIVCFLVTKTYVTSITWF-------GLH  152 (226)
Q Consensus        85 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~  152 (226)
                      ...  .+..+.+...+.+ +.-+...+...|.++++   .|.....+.+...++|+++++.+.+++.++.       +|+
T Consensus        83 ~~~~~~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~  161 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP  161 (654)
T ss_pred             hHHHHHHHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence            111  2222222222222 23355556778888753   4677888899999999999999999887553       587


Q ss_pred             hHHHHHHHHHHHhh
Q psy10294        153 GTLFIYSFITGIGF  166 (226)
Q Consensus       153 ~~~~~~~~~~~i~~  166 (226)
                      ..|.+.++..+++.
T Consensus       162 ~aF~i~~i~m~ia~  175 (654)
T TIGR00926       162 LAFGVPAILMILAL  175 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766665

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.02  E-value=5.3e-05  Score=66.56  Aligned_cols=164  Identities=14%  Similarity=0.154  Sum_probs=103.7

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHHH-HHHHHHHHHHHHHHHHhhc--
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK----FGKRPMSL-WSTGICFVFTIALAICSMN--   80 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~----~Grr~~~~-~~~~~~~i~~~~~~~~~~~--   80 (226)
                      .....|+..++.| .|++. ..+....+.-+...+..++.|.++||    +|||+..+ ++.+..++.....+. ...  
T Consensus        29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~-~p~~~  107 (467)
T COG2211          29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFI-TPDFS  107 (467)
T ss_pred             HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHc-CCCcc
Confidence            3456778888876 68886 56666667777778999999999995    78766554 454555553333333 111  


Q ss_pred             CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------hchh
Q psy10294         81 LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFP-VRIRGVACGICAAINSIVCFLVTKTYVTSITW-------FGLH  152 (226)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~  152 (226)
                      ......+......+...++.....|. .++.+|+.+ +++|.+..+.-..+..++..+...+.+.+.+.       .||+
T Consensus       108 ~~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~  186 (467)
T COG2211         108 MTGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ  186 (467)
T ss_pred             cCcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence            01223333333344444444332222 246677764 58999999999999999988888777766654       3566


Q ss_pred             hHHHHHHHHHHHhhhhhhcccccccccceeEEEEecc
Q psy10294        153 GTLFIYSFITGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       153 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      ....+++++..+..              +.+++-.+|
T Consensus       187 ~~~~~~~vi~~i~~--------------l~~~~~v~E  209 (467)
T COG2211         187 GTALVLGVIGVILL--------------LFCFFNVKE  209 (467)
T ss_pred             HHHHHHHHHHHHHH--------------HHHHHHhhc
Confidence            66666666666665              566665666

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.00  E-value=1e-05  Score=53.57  Aligned_cols=62  Identities=15%  Similarity=0.298  Sum_probs=53.1

Q ss_pred             cccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHH
Q psy10294          5 FNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI   66 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~   66 (226)
                      .+.+...+.+|+|.+.++.|++. +.+....+.-+...++++++|.++||++|++..+.....
T Consensus        12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34566778899999999999998 778888889999999999999999999999887765544

>KOG2533|consensus

Probab=97.92  E-value=9.1e-06  Score=72.30  Aligned_cols=145  Identities=8%  Similarity=0.033  Sum_probs=82.5

Q ss_pred             cccccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHHHHHHHHHHHHH-HHHHHH
Q psy10294          5 FNSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK----FGKRPMSLWSTGICFVFT-IALAIC   77 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~----~Grr~~~~~~~~~~~i~~-~~~~~~   77 (226)
                      .....+.+.+|+|.++++ .|++. ++...++...++.+++.+++|+++||    ..+|........+..+.. ..... 
T Consensus       285 ~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~-  363 (495)
T KOG2533|consen  285 LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA-  363 (495)
T ss_pred             HhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            344567788999999988 56877 77888899999999999999999999    566666655555554422 22222 


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcc-ccchhhHHhhccCCcchhh-hHHHHHHHHHHHHHHHHHHHHHH-HHHhhchhhH
Q psy10294         78 SMNLHWPGWIPLTIFCICFWISGYG-ILALPWMLMSEIFPVRIRG-VACGICAAINSIVCFLVTKTYVT-SITWFGLHGT  154 (226)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~R~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  154 (226)
                          .........  ..+.+.++.. ..+......++......|. +..+........++.+++.+... ...+++|...
T Consensus       364 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~  437 (495)
T KOG2533|consen  364 ----AAVLPGAYG--AFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAV  437 (495)
T ss_pred             ----hccchHHhH--HHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhH
Confidence                111111111  1111111111 1233444555555554444 44444444555556665555443 3344566555


Q ss_pred             HH
Q psy10294        155 LF  156 (226)
Q Consensus       155 ~~  156 (226)
                      +.
T Consensus       438 f~  439 (495)
T KOG2533|consen  438 FY  439 (495)
T ss_pred             HH
Confidence            53

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.91  E-value=0.0013  Score=52.88  Aligned_cols=145  Identities=20%  Similarity=0.241  Sum_probs=84.9

Q ss_pred             ccHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy10294         14 PYLVEIFQTFGVPL---KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT   90 (226)
Q Consensus        14 ~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   90 (226)
                      ...+.+..+.+.+.   ...+......+...++.+..|.+.||+|||+.+..+........+....  .  .......+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~   98 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL--A--PNVGLALLL   98 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh--C--ccchHHHHH
Confidence            34555566655443   2456677777778888899999999999998777776652222122222  0  111222222


Q ss_pred             HHHHHHHHHhccccchhhHHhhccCCc-chhhhHHHHHHH-HHHHHHHHHHHHHHHHHHh--hchhhHHHHHHHHH
Q psy10294         91 IFCICFWISGYGILALPWMLMSEIFPV-RIRGVACGICAA-INSIVCFLVTKTYVTSITW--FGLHGTLFIYSFIT  162 (226)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~  162 (226)
                      ......+.......+....+..|..|. +.|+...+.... ...++..+++.+...+...  .+|+..+.......
T Consensus        99 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477          99 ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            222222222223445667789999998 678888888777 4556666666555544433  56776444444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.91  E-value=0.00023  Score=61.28  Aligned_cols=131  Identities=13%  Similarity=0.072  Sum_probs=72.7

Q ss_pred             ccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         14 PYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        14 ~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      .+.|.+.++ +|.+. +..+......++..+++++.+++.||++|+...................  .......+.....
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  305 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPG--WFGVMNVWTLLVP  305 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccHHHHHHH
Confidence            344556655 67776 4555556666777778888888888887433222121111111111111  0001122222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      ......+.+. ..+....+..|.+| +.++++.++.+....++..+++.+.+.+...
T Consensus       306 ~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        306 AALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            2222222222 23555566778887 5789999999988889999998887765443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.90  E-value=9.1e-06  Score=70.43  Aligned_cols=150  Identities=15%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             cceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH-HhhcCCCch
Q psy10294          9 FVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAI-CSMNLHWPG   85 (226)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~   85 (226)
                      .....++.|..+++ .|++. +.+...+...+..++.+++.|.++||+|.||-+++...+..+...+... .+...-+.+
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n  102 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN  102 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677777875 79998 7788888888999999999999999999777666554444331111111 000000011


Q ss_pred             HHHHHHHHHHHHHHhccccc---hhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILA---LPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFIT  162 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  162 (226)
                      .....  .......+..+.+   +.-+++.+.  .+..+.-.|=..+.+++|-.+++.+.+.+.+. +.+..+|+.....
T Consensus       103 ~~lg~--iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~  177 (412)
T PF01306_consen  103 FWLGA--IIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAA  177 (412)
T ss_dssp             -HHHH--HHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHH
Confidence            11111  1111112222322   222233211  23345556777788888888999998888764 4455666554443


Q ss_pred             H
Q psy10294        163 G  163 (226)
Q Consensus       163 ~  163 (226)
                      .
T Consensus       178 ~  178 (412)
T PF01306_consen  178 I  178 (412)
T ss_dssp             H
T ss_pred             H
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.87  E-value=4.8e-05  Score=66.16  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             cccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHH
Q psy10294          5 FNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFV   69 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i   69 (226)
                      ++.......+|+|.++++.|++. +.+...+...+..+++++++|+++||.++ |+.+.+..++..+
T Consensus        14 ~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~   80 (400)
T PF03825_consen   14 YFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL   80 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence            34445566788999999999987 77888899999999999999999999875 5555555555554

>KOG3762|consensus

Probab=97.82  E-value=3.1e-05  Score=68.51  Aligned_cols=130  Identities=17%  Similarity=0.065  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhh
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPW  108 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (226)
                      +........+.++.-+..+++.+|+|+-+++..++.+..+ ++.....      .++|..+-+-.+-+...+..+ ...-
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------~n~W~vLPieilqgit~aliW-aa~~  481 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------QNPWMVLPIEILQGITHALIW-AAII  481 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------cCchheeeHHHHHHHHHHHHH-HHHH
Confidence            3455666677788889999999999999999999888888 5443333      445555544444444444433 3344


Q ss_pred             HHhhccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        109 MLMSEIFPVRIRGVACGICAAI-NSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       109 ~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .|++...|++.|+++.++.... -.+|-.+++.+++.+.+.++-+..|.++++.+++..
T Consensus       482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l  540 (618)
T KOG3762|consen  482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTL  540 (618)
T ss_pred             HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHH
Confidence            6999999999999999987654 457888899999999999999999998888877765

>KOG2563|consensus

Probab=97.77  E-value=0.00015  Score=62.88  Aligned_cols=120  Identities=18%  Similarity=0.108  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHH-HHhccccc
Q psy10294         28 KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMN-LHWPGWIPLTIFCICFW-ISGYGILA  105 (226)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  105 (226)
                      .+.|.+.++.+.+++..+.+.|+.||+|-|...+++.....+....-..+... -+...+..+....-... ........
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~  159 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG  159 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc
Confidence            56788999999999999999999999999999999999988833322221111 00111211111111111 11111112


Q ss_pred             hhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        106 LPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       106 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      .+.-+..-+||+++|++++.+..+.+.+|..++..+-+.+..
T Consensus       160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            223355568999999999999999988888888776665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.76  E-value=0.001  Score=59.18  Aligned_cols=141  Identities=13%  Similarity=0.046  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      ....+..+...+..++.|.++|+-|+||.++.......+ ......+ .  +....+....+..+...+++.+ ...-..
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~-v--~~~~~~~~~~l~iia~v~~~~~-~vfyna  149 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF-V--SPGQWWLALVLFIIANVGYEAS-NVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH-h--CcchHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            345566777788889999999999987777655544444 4444444 1  1222233333333333333322 233456


Q ss_pred             HhhccCCcchh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHh--------hchhhHH
Q psy10294        110 LMSEIFPVRIR--------------------------GVACGICAAINSIVCFLVTKTYVTSITW--------FGLHGTL  155 (226)
Q Consensus       110 ~~~e~~p~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~  155 (226)
                      +..|+.+++.+                          ++..+.....+++|+.+.-.+.-.+...        ...|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            88899988888                          8999999889999888776654443321        2246666


Q ss_pred             HHHHHHHHHhhhhhhcccccccccceeEEEEecc
Q psy10294        156 FIYSFITGIGFAIRIRGVACGICAAINSIVCFLV  189 (226)
Q Consensus       156 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e  189 (226)
                      .+.++.-++..              +..++++||
T Consensus       230 ~~~a~ww~vfs--------------iP~~~~~~~  249 (477)
T PF11700_consen  230 LIVALWWLVFS--------------IPLFLWLPD  249 (477)
T ss_pred             HHHHHHHHHHH--------------HHHHHhCCC
Confidence            66666655555              555566777

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.52  E-value=0.00053  Score=61.24  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChH-------HHHHHHHHHHHHHHHHH---HHhhc-C-CCchHHHHHHHHHHH
Q psy10294         29 SEWVLVLTGVLAITGSLVSSLTVNKFGKRP-------MSLWSTGICFVFTIALA---ICSMN-L-HWPGWIPLTIFCICF   96 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~-------~~~~~~~~~~i~~~~~~---~~~~~-~-~~~~~~~~~~~~~~~   96 (226)
                      +.+......+..++.+++.+.+.||++||+       -+.++.++..+..+...   ..... + ..+.++......+.+
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            445555666667778888899999999986       35566666555221110   10111 1 122233333333332


Q ss_pred             HHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         97 WISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVT  144 (226)
Q Consensus        97 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~  144 (226)
                      .+ .....+....++.+..|++.++.++|+......+|+.++..+...
T Consensus       391 ~G-e~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~  437 (489)
T PRK10207        391 LG-ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF  437 (489)
T ss_pred             HH-HHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 222345556678888999999999999998888888888776643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.51  E-value=0.0011  Score=60.24  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             ceecccHHHHHhh-cCCCc----hHHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10294         10 VSMRPYLVEIFQT-FGVPL----KSEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFVFTIALAICSMNLHW   83 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~   83 (226)
                      +++..+.|+.... ++-+.    +..+......++...|+++.+.+..+++| |..++++.+.+.++.-++.....+  +
T Consensus       327 ~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~--n  404 (599)
T PF06609_consen  327 FSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPD--N  404 (599)
T ss_pred             HHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCC--C
Confidence            3444455555443 33332    23566677888888899999999988887 555556655555432222221111  1


Q ss_pred             chHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         84 PGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTS  145 (226)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  145 (226)
                      .+ .......+.+.+.+.. .....+.++-..|++.-+++.++...+..+|+.++..++..+
T Consensus       405 ~~-~~i~~~~l~g~giG~~-~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  405 KN-AAIAFLVLAGFGIGGI-LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             cc-hHHHHHHHHHHhHHHH-HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            22 1222222222222221 122334555568999999999999999888888877665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.46  E-value=0.0079  Score=51.94  Aligned_cols=111  Identities=13%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhcccC-----ChHHHHHHHHHHHH---HHHHHHHHhhcC-----CCchHHHHHHHHHHHHHHhcccc---
Q psy10294         41 ITGSLVSSLTVNKFG-----KRPMSLWSTGICFV---FTIALAICSMNL-----HWPGWIPLTIFCICFWISGYGIL---  104 (226)
Q Consensus        41 ~~~~~~~~~l~d~~G-----rr~~~~~~~~~~~i---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---  104 (226)
                      .+..+..|+.+|+.+     ||..+++.......   ...+........     ..+.+.-.......+..++.+..   
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            346789999999999     99888775444433   111111111111     11223322222222333333332   


Q ss_pred             chhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy10294        105 ALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGL  151 (226)
Q Consensus       105 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  151 (226)
                      ..-.++.+|..|+++|+++.++......+|..++..+.+.+.+.+..
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            22346889999999999999999998889999999888887776553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.0025  Score=54.80  Aligned_cols=142  Identities=12%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             ecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         12 MRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        12 ~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      +..+++.+..+ .|.+. +.....+....+.++|-+++.++..|+...+.+....++..+.++....      .++...+
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l------~~g~v~~  328 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL------IGGVVAL  328 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH------hcChHHH
Confidence            45677888877 67776 5667788888899999999999999999888887777666663333333      1223333


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFIT  162 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  162 (226)
                      .....++.+.+ ...|..+....+..|. + ....|..-....+|+.+.|++.+++.|..|-...+.....++
T Consensus       329 ~~l~~ig~F~s-imfPTIfslal~~l~~-~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc  398 (422)
T COG0738         329 YALFLIGLFNS-IMFPTIFSLALKNLGE-H-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLC  398 (422)
T ss_pred             HHHHHHHHHhH-HHHHHHHHHHHhccCc-c-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33333333333 3457777888888883 3 333344444567889999999999999988766555333333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.45  E-value=0.0076  Score=45.43  Aligned_cols=107  Identities=10%  Similarity=-0.007  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM  109 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (226)
                      .....+......+.+++...+.+++|.|+.++++.+...+.......      ...+..+..-.+.+.+.+. .....-.
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~-lW~aqg~  112 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAAL-LWTAQGT  112 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHH-hhHhhhH
Confidence            34556667777888889999999999999999999888875544433      1223333322233333332 2233345


Q ss_pred             HhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10294        110 LMSEIFPVRIRGVACGICAAINSIVCFLVTKTYV  143 (226)
Q Consensus       110 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      ++.+..+++.|++-.++.......+.+++..+.-
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7888889999999988877777666666655433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.36  E-value=0.0024  Score=56.18  Aligned_cols=147  Identities=13%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             HHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-----CChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q psy10294         16 LVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-----GKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPL   89 (226)
Q Consensus        16 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-----Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   89 (226)
                      .|.+.+++|++. +.+.......+ --...++.|.++|-+     .||+-++++.+++.+....... ......+.....
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~-~~~~~~s~~~~~   90 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL-LPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh-cccccchhhhHH
Confidence            445556788885 33322222222 234578899999976     3555555666666543332222 111111111211


Q ss_pred             HHHHHHHHHHhccccchhhHHhhccC---CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         90 TIFCICFWISGYGILALPWMLMSEIF---PVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..+.....+... .....-..+.|..   |.+ |+...+.......+|+.++..+.+.+.+..+.+..|.+.+.+..+..
T Consensus        91 ~~l~la~~g~a~-~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   91 VLLFLASFGYAF-ADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHH-HHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            222221122111 2233334555653   445 88888888888899999999999999998898888888877776665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.33  E-value=0.0017  Score=58.18  Aligned_cols=115  Identities=12%  Similarity=0.013  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcC--CCchHHHHHHHHHHHHHHhc
Q psy10294         29 SEWVLVLTGVLAITGSLVSS----LTVNKFGKRPMSLWSTGICFVFTIALAIC-SMNL--HWPGWIPLTIFCICFWISGY  101 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~----~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~  101 (226)
                      ..+...+..+..++..++.+    ++.||++.++.+.++.++.++........ ...+  ...+.........+.+....
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            45566666666666655554    44455555566677777776632222221 1100  11112223333333344444


Q ss_pred             cccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10294        102 GILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYV  143 (226)
Q Consensus       102 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      ...|....++.+..|++.||+.+|.......+++.++..+..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777788999999999999999887766666666655543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.33  E-value=0.004  Score=55.44  Aligned_cols=135  Identities=14%  Similarity=0.020  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHHHHhh-cCC-------------Cc--hHHHHHHHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFVFTIALAICSM-NLH-------------WP--GWIPLTIFC   93 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i~~~~~~~~~~-~~~-------------~~--~~~~~~~~~   93 (226)
                      +...+..+...+.+++--++.+|+|+ |+....+.++.+++.....+... .++             ..  .+..+..+.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44556666666777778888999995 67778887777764333332111 000             00  133333333


Q ss_pred             HHHHHHhccccchhhHHhhccCCc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHHhh
Q psy10294         94 ICFWISGYGILALPWMLMSEIFPV--RIRGVACGICAAINSIVCFLVTKTYVTSITWFGL--HGTLFIYSFITGIGF  166 (226)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~i~~  166 (226)
                      ..+... .....+++++++|..|+  +..|..+|+.+.+..+.+.+.+...+.+.+.+|-  ...+.+-++..+++.
T Consensus       389 ~~Gi~~-A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa  464 (477)
T TIGR01301       389 ILGIPL-AITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSG  464 (477)
T ss_pred             HhhHHH-HHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHH
Confidence            333332 33457899999999995  4458999999999999999988877776666652  233444444455554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.30  E-value=0.012  Score=52.49  Aligned_cols=138  Identities=14%  Similarity=0.044  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----Hhcc-cCChHHH--HHHHHHHHHHHHHHHH-HhhcC--CCchHHHHHHHHHHHHH
Q psy10294         29 SEWVLVLTGVLAITGSLVSSL----TVNK-FGKRPMS--LWSTGICFVFTIALAI-CSMNL--HWPGWIPLTIFCICFWI   98 (226)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~----l~d~-~Grr~~~--~~~~~~~~i~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~   98 (226)
                      ..+..++..+.-++..++..+    +.|| .+.+...  .+|.++..+....... ....+  ...+...++....+...
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            456666666666666665444    3443 2223333  4555555542211111 01111  11222223333333333


Q ss_pred             HhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         99 SGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        99 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ......|....+++|..|++.||+.+|+......+|..+++.+.....+..+|.+.+...+....+..
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVG  461 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence            34445677788999999999999999999999999999988887766665567666666555555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2563|consensus

Probab=97.21  E-value=0.0004  Score=60.37  Aligned_cols=142  Identities=17%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Q psy10294         23 FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGK-RPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISG  100 (226)
Q Consensus        23 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (226)
                      .|++. .+++......+..++++.++|.+.||.++ |...++......+..+....+..  .....+.+...+...+.++
T Consensus       296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~--~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL--FLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEehhhhHHHHHHhh
Confidence            46665 56777778888889999999999999876 44444444444443322222111  2222233333444445556


Q ss_pred             ccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----hhhHHHHHHHHHHHhh
Q psy10294        101 YGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG----LHGTLFIYSFITGIGF  166 (226)
Q Consensus       101 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~i~~  166 (226)
                      .+..|+-.-+..|..-|..-++..|+....+.+-+++-....+...+..+    +...-+.......+..
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  443 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGA  443 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHH
Confidence            66677766667776544445677888888888888888888777777666    4333344444444443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.17  E-value=0.0025  Score=42.77  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             eecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHH
Q psy10294         11 SMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAI   76 (226)
Q Consensus        11 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~   76 (226)
                      ...+.+|.+.++.+++. +..+..+.+.+++.+|++....+.++..+++.+..+.+.+.+....+..
T Consensus        10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999998 7889999999999999999999999988888888888888775555444

Note that many members are hypothetical proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=97.03  E-value=0.014  Score=53.32  Aligned_cols=149  Identities=17%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             eecccHHHHHhhc-CCCchH--H-HHHHHHHHHHHHHHHHHHHHhcccCCh--------HHHHHHHHHHHHHHHHHHHHh
Q psy10294         11 SMRPYLVEIFQTF-GVPLKS--E-WVLVLTGVLAITGSLVSSLTVNKFGKR--------PMSLWSTGICFVFTIALAICS   78 (226)
Q Consensus        11 ~~~~~~~~~~~~~-g~~~~~--~-~~~~~~~~~~~~~~~~~~~l~d~~Grr--------~~~~~~~~~~~i~~~~~~~~~   78 (226)
                      .+..-+.++.+.+ |.+.+.  . ...++.++++.+|-+.+|+++...-||        +..+....++.+..+.++.  
T Consensus       371 ~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~--  448 (591)
T PTZ00207        371 VIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFL--  448 (591)
T ss_pred             eeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH--
Confidence            3344466777877 763322  2 257788888888888888776222222        2222222222222222222  


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhh--------
Q psy10294         79 MNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLV-TKTYVTSITWF--------  149 (226)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------  149 (226)
                         ..+.....+...+.+.++|..+ ++....++|+|. ++=|+-..+......+|+.+. -.+.+.+.|..        
T Consensus       449 ---~~p~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~  523 (591)
T PTZ00207        449 ---TLPKAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDV  523 (591)
T ss_pred             ---HCCccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence               1221223333334444444433 455568999999 888888888877777777765 45666665542        


Q ss_pred             -----chhhHHHHHHHHHHHhh
Q psy10294        150 -----GLHGTLFIYSFITGIGF  166 (226)
Q Consensus       150 -----g~~~~~~~~~~~~~i~~  166 (226)
                           ..+.+|++.+.++.++.
T Consensus       524 C~G~~C~~~~~~v~~~~~~~g~  545 (591)
T PTZ00207        524 CTERVCVVMPLAFLLGLSFLAF  545 (591)
T ss_pred             eCCceeeHhHHHHHHHHHHHHH
Confidence                 25678888888888776

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.00  E-value=0.014  Score=50.94  Aligned_cols=151  Identities=9%  Similarity=-0.043  Sum_probs=73.1

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcCCCchHH
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNLHWPGWI   87 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~   87 (226)
                      ....+.|.+.++ .|.+. +..+.......+..+++.+.+.+.++..+++.......+..+ ..+........ .+..+.
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~~~~~~  314 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-PHVWLW  314 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-cccHHH
Confidence            344557878776 47876 455655566667777777777665444443332222211111 11111100000 111111


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIG  165 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  165 (226)
                      ..........+.+... +...... ..-....+|++.++.+.....+...++...+++.++ +-+..+.....+..+.
T Consensus       315 ~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        315 SVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence            1222222222222221 2222111 111222478888888888888888888887776665 4455565555444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.93  E-value=0.022  Score=49.50  Aligned_cols=153  Identities=12%  Similarity=-0.058  Sum_probs=85.7

Q ss_pred             eecccHHHHHhh-c---CCCc-hH--H--HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhc
Q psy10294         11 SMRPYLVEIFQT-F---GVPL-KS--E--WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMN   80 (226)
Q Consensus        11 ~~~~~~~~~~~~-~---g~~~-~~--~--~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~   80 (226)
                      ...++.|.++++ .   |.+. +.  .  ...++..+...+-+++-|.++|+.|+||..+-......+ +...+.. ..+
T Consensus        33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~-i~~  111 (438)
T COG2270          33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWF-IPP  111 (438)
T ss_pred             eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH-hCC
Confidence            445666666654 2   3343 22  2  234556666677788889999999987776655555444 4444444 111


Q ss_pred             CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy10294         81 LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI--------------  146 (226)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  146 (226)
                       . ..+.....+.........+.+..-..+..++.+++.-++..+.....+.+|+.+.-.......              
T Consensus       112 -~-s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~  189 (438)
T COG2270         112 -G-SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLG  189 (438)
T ss_pred             -C-chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeec
Confidence             1 233333333332222222222334467888888888888888877777777765443321111              


Q ss_pred             ----HhhchhhHHHHHHHHHHHhh
Q psy10294        147 ----TWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       147 ----~~~g~~~~~~~~~~~~~i~~  166 (226)
                          +...-|.++.+.++..++..
T Consensus       190 l~~~~~~~~ri~~~l~A~W~li~~  213 (438)
T COG2270         190 LPPADGEDVRITGLLAALWWLLFA  213 (438)
T ss_pred             cCccccccchhHHHHHHHHHHHHH
Confidence                22345666777777766665

>KOG1330|consensus

Probab=96.51  E-value=0.032  Score=49.04  Aligned_cols=140  Identities=13%  Similarity=0.030  Sum_probs=72.0

Q ss_pred             ecccHHHHHhh----cCCCch-HHHHHHHHHHHHHHHHHHHHHHhcccC-------ChHHHHHHHHHHHHHHHHHHHHhh
Q psy10294         12 MRPYLVEIFQT----FGVPLK-SEWVLVLTGVLAITGSLVSSLTVNKFG-------KRPMSLWSTGICFVFTIALAICSM   79 (226)
Q Consensus        12 ~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~G-------rr~~~~~~~~~~~i~~~~~~~~~~   79 (226)
                      +..+.|.+...    .|.+.+ ..+...+...+..+|.+++|.++||+-       |.+.-.......+...+....+..
T Consensus       263 ~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~  342 (493)
T KOG1330|consen  263 LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP  342 (493)
T ss_pred             cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH
Confidence            34455544432    344443 345566777788999999999999842       222222222222221111111111


Q ss_pred             cCCCc-hHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhh-chh
Q psy10294         80 NLHWP-GWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIV-CFLVTKTYVTSITWF-GLH  152 (226)
Q Consensus        80 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-g~~  152 (226)
                      ..... .+..++++.+........+.+... +..|+.|++.|.++.++.....-+. .+-+|++.+.+.++. ||+
T Consensus       343 ~~~~~s~~~~~il~~~g~~~~~~~~a~n~~-i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  343 AFTSSSMIFGLILFLVGETISWFNWATNNP-IFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccccccc-eeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            11122 222222222222222333333343 4458899999999999988776654 444555777766653 443

>TIGR01272 gluP glucose/galactose transporter

Probab=96.28  E-value=0.014  Score=48.95  Aligned_cols=62  Identities=10%  Similarity=-0.028  Sum_probs=50.0

Q ss_pred             cchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhchhhHHHHHHHHHHHh
Q psy10294        104 LALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT----------------WFGLHGTLFIYSFITGIG  165 (226)
Q Consensus       104 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~i~  165 (226)
                      .+....+++++.|++++++..++.+.++.+|.+++|.+...+..                ...|+.+++..+.+..+.
T Consensus        28 q~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~  105 (310)
T TIGR01272        28 QVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVL  105 (310)
T ss_pred             HhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            35566789999999999999999999999999999999987763                146788888666654444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.27  E-value=0.24  Score=42.99  Aligned_cols=123  Identities=14%  Similarity=0.096  Sum_probs=80.1

Q ss_pred             cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Q psy10294         23 FGVPL-KSEWVLVLTGVLAITGSLVSSLTVN-KFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISG  100 (226)
Q Consensus        23 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d-~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (226)
                      +|++. +.+..+.....+..+|-...+++.. |.++|+...+++..+.+....+.....  ..+.+........++.+.+
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--LGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHhhh
Confidence            57887 6677888888888999888887666 678888888888888773222222111  1223333333333333333


Q ss_pred             ccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294        101 YGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus       101 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      ....... ..+-|+.+++..|..+|.+.....++..++....+.+.|.
T Consensus       317 ~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  317 LFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222222 3455888889999999999988888888888877776653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.97  E-value=0.4  Score=43.07  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHhcccCC--hH-----HHHHHHHHHHH-H-HHHHHHHhhcC-CCchHHHHHHHH
Q psy10294         24 GVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGK--RP-----MSLWSTGICFV-F-TIALAICSMNL-HWPGWIPLTIFC   93 (226)
Q Consensus        24 g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Gr--r~-----~~~~~~~~~~i-~-~~~~~~~~~~~-~~~~~~~~~~~~   93 (226)
                      |++..+.|..+++.+.-++.+++.+++=.|.+|  |.     =+-++.++..+ + .+......... ...+...++...
T Consensus       305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~  384 (493)
T PRK15462        305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGL  384 (493)
T ss_pred             ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH
Confidence            333346777788888777777777766556532  21     13445555555 2 22222211111 112222233333


Q ss_pred             HHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q psy10294         94 ICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAIN-SIVCFLVTKTYVTS  145 (226)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~  145 (226)
                      .+.........|+....++++.|++.||+.+|...... .++..++..+....
T Consensus       385 ~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        385 AVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344455667888889999999999999999986643 56666665554443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.87  E-value=0.59  Score=41.71  Aligned_cols=114  Identities=12%  Similarity=0.054  Sum_probs=70.5

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhcccCChHHHHHHHHHHHH--HHHHHHHHhhcCCC------------------------
Q psy10294         31 WVLVLTGVLA-ITGSLVSSLTVNKFGKRPMSLWSTGICFV--FTIALAICSMNLHW------------------------   83 (226)
Q Consensus        31 ~~~~~~~~~~-~~~~~~~~~l~d~~Grr~~~~~~~~~~~i--~~~~~~~~~~~~~~------------------------   83 (226)
                      +.-+...+.. ++..++.+++++|++|++.+-+.......  ..+.... +.+.+.                        
T Consensus        47 fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~  125 (472)
T TIGR00769        47 FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAI  125 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence            3333333333 33478889999999999988776555555  2222222 211111                        


Q ss_pred             -chHHHHHHHHHHHHHHhccccc-hhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         84 -PGWIPLTIFCICFWISGYGILA-LPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI  146 (226)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (226)
                       ..|.. ..+....-..+.-..+ +-|.+++|++++++-.+-.++...+++++..+++.+..++.
T Consensus       126 ~~~W~~-~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       126 LRIWSF-ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             01111 1111111222222223 67899999999999999999999999999999998877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.65  E-value=0.65  Score=40.97  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             cHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHH
Q psy10294         15 YLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWP-GWIPLTIF   92 (226)
Q Consensus        15 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~   92 (226)
                      ....+..+.|++. ..+..-....+..+.|.++..++.+|+|-.+.=+++......+.............+ .......+
T Consensus       280 lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l  359 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL  359 (432)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence            3455666668876 455666677777888999999999999999888888887777333222212222222 12222222


Q ss_pred             HHHHHHHhcc---ccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy10294         93 CICFWISGYG---ILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKT  141 (226)
Q Consensus        93 ~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  141 (226)
                      .......=.|   +.....-++.|..|+++||+..|.-...+++...+...+
T Consensus       360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222   233344578899999999999999888887766655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762|consensus

Probab=95.53  E-value=0.022  Score=50.94  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             cccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q psy10294          5 FNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV   69 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i   69 (226)
                      ...+..++.+.++.+.+++|++. +.......-=+..+++.+++|+++||+-+|+.++++..+..+
T Consensus        23 ~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   23 FGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             eeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            45566788899999999999987 666666677778899999999999999988777777666655

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.49  E-value=0.49  Score=41.36  Aligned_cols=128  Identities=6%  Similarity=-0.062  Sum_probs=74.1

Q ss_pred             cccHHHHHhh--cCCCc-hHHHHHHHH-HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         13 RPYLVEIFQT--FGVPL-KSEWVLVLT-GVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        13 ~~~~~~~~~~--~g~~~-~~~~~~~~~-~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      -+|+..++.+  .|++. +...-.... .-..+..-+....+.|..|-|++++.+.+...+.-..+..     ...-...
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~-----~~sv~~m   97 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF-----GTSVLAM   97 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----HCcHHHH
Confidence            3454455543  57765 332222222 2233556667788999999999999888877663333333     1233333


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      -..-...+....  ....-+.|+--..|+++=-++.+.......+|.+++..++..+..
T Consensus        98 q~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   98 QLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333332222  223334455555677777778888888877888888877776655

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3764|consensus

Probab=95.48  E-value=0.026  Score=48.83  Aligned_cols=140  Identities=12%  Similarity=0.077  Sum_probs=81.1

Q ss_pred             hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy10294         21 QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFG--KRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFW   97 (226)
Q Consensus        21 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +++..+. +.........+...++..+.+.+.||++  |-.....+.....++......+.  .-..-+......+..+.
T Consensus       299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT--SIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh--hHHHHhhhhHHHHHHHH
Confidence            3455444 3445555677788999999999999999  43333333333333332222210  00011222222222222


Q ss_pred             HHhccccchhhHHhhccCCcc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         98 ISGYGILALPWMLMSEIFPVR------IRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        98 ~~~~~~~~~~~~~~~e~~p~~------~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .......|.    ..++...+      .=|...++......++..++|.+.+.+.+.+|++|...+.++..++-.
T Consensus       377 ~~dasl~P~----l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya  447 (464)
T KOG3764|consen  377 LADASLIPT----LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA  447 (464)
T ss_pred             HHHHHHhhh----hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence            222222222    22333332      346778888888899999999999999999999988887777766654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.44  E-value=0.004  Score=56.33  Aligned_cols=133  Identities=11%  Similarity=-0.058  Sum_probs=1.3

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcC---------
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNL---------   81 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~---------   81 (226)
                      ..-++++.+.++++. +.++..+...++..+..++.+++.+|..|-+.+-.+.++.++ ..+.........         
T Consensus        23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            344667777899988 788889999999999999999999886665666666666665 221111100000         


Q ss_pred             -------------------------------CCchHHHHHHHHHHHHHHhcccc---chhhHHhhccCCcchhhhHHHHH
Q psy10294         82 -------------------------------HWPGWIPLTIFCICFWISGYGIL---ALPWMLMSEIFPVRIRGVACGIC  127 (226)
Q Consensus        82 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~  127 (226)
                                                     .......+.++.+.....|.|..   ++..+|+-|..+++.-+.-.|+.
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~  182 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL  182 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence                                           01111122333333333444433   44567999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy10294        128 AAINSIVCFLVTKTYVTS  145 (226)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~  145 (226)
                      +....+|..++-.+.+..
T Consensus       183 ~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  183 YAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             ------------------
T ss_pred             hHHhhccHHHHHHHHHHH
Confidence            887777777665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.16  E-value=0.11  Score=45.66  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH--hhcC---CCchHHHHHHHHHHHHHHhccccch
Q psy10294         32 VLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAIC--SMNL---HWPGWIPLTIFCICFWISGYGILAL  106 (226)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  106 (226)
                      ...+..++.++|..+.....-+..-|+++.+..++..+..+.-...  ..|.   -.+.+..+.--.+........+.|.
T Consensus       260 ~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~  339 (433)
T PF03092_consen  260 LSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPS  339 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH
Confidence            3344555556666666555545566777766666554422110000  0010   0011111111122222223333343


Q ss_pred             hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294        107 PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus       107 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      . ..++|++|+..-|+..++.....+++..++..+...+.+.++
T Consensus       340 l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  340 L-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             H-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3 467899999999999999999999999999999888877665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.99  E-value=0.24  Score=42.51  Aligned_cols=64  Identities=8%  Similarity=-0.159  Sum_probs=51.7

Q ss_pred             ccchhhHHhhccCCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        103 ILALPWMLMSEIFPVR---IRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       103 ~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      .-|....+..|.++++   .|.....+.+...++|+.++....+++.++.||...|.+.++..+++.
T Consensus        50 ~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~  116 (372)
T PF00854_consen   50 IKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLAL  116 (372)
T ss_dssp             CHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHH
Confidence            4466667888998765   566677788999999999999999999999999988888777766665

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816|consensus

Probab=93.94  E-value=1.3  Score=39.38  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=80.3

Q ss_pred             cCCCc-hHHHHHHHHHHHHHHHHHHHH-HHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Q psy10294         23 FGVPL-KSEWVLVLTGVLAITGSLVSS-LTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISG  100 (226)
Q Consensus        23 ~g~~~-~~~~~~~~~~~~~~~~~~~~~-~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (226)
                      ++.+. +.............++.++.. .+...+|.|+....|.....+......+     .+..|........  ....
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af-----~~~~w~~~~~~v~--~~~~  344 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF-----ATETWMMFAAGVV--VALA  344 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH-----hccchhhhHHHHH--HHhh
Confidence            56666 445566677777778777776 7778889999777777777773333333     2334443332222  1222


Q ss_pred             ccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        101 YGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       101 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      ....+...+.++-..+++++|+..++.+....+.+.++|.+.+.+..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            23345566678888899999999999999999999999988876643

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=93.16  E-value=0.77  Score=40.93  Aligned_cols=133  Identities=13%  Similarity=0.060  Sum_probs=79.5

Q ss_pred             eecccHHHHHhh--cCCCchHHHHHHHHHHHHHHHHHHHHHHhcccCCh---H----HHHHHHHHHHH--HHHHHHHHhh
Q psy10294         11 SMRPYLVEIFQT--FGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKR---P----MSLWSTGICFV--FTIALAICSM   79 (226)
Q Consensus        11 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr---~----~~~~~~~~~~i--~~~~~~~~~~   79 (226)
                      ++..|.....+.  +|.+.+..+..++..+.-++.+++..++..|.+||   +    -+-.+..++..  +++.......
T Consensus       306 sl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~  385 (498)
T COG3104         306 SLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF  385 (498)
T ss_pred             hHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444332  34444667778888888888888888888775543   1    12234444443  2222221111


Q ss_pred             c--CCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10294         80 N--LHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYV  143 (226)
Q Consensus        80 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      .  ....+...++....+.........|+.-.+++.+.|++..+..+++.......+..++..+.+
T Consensus       386 ~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         386 GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            1  122233333334444455566667777788999999999999999998888888877766655

>KOG2615|consensus

Probab=93.03  E-value=0.38  Score=41.62  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             hhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy10294         21 QTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFG--KRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFW   97 (226)
Q Consensus        21 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (226)
                      +.+|++. +.+......++.+.+....-.+..||..  -+-.+..+...+.-.......     ............+.. 
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~-----~~~~~~l~~~s~l~s-  363 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL-----ARTPVVLYLGSTLKS-  363 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-----cccchhhhHHHHHHH-
Confidence            4477777 5555556666666666666666777665  344433333333221111111     122222222222222 


Q ss_pred             HHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10294         98 ISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITW  148 (226)
Q Consensus        98 ~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (226)
                      +.+....+-...++...-|+++||+..|+....+.++-.++|.+.+....|
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            222222233456778889999999999999999999999999988765543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.00  E-value=0.48  Score=42.49  Aligned_cols=108  Identities=14%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhcccCChHHHHHHHHHHHH--HHHHHHHHhhcC---CCch------------H---------HHHHHH
Q psy10294         39 LAITGSLVSSLTVNKFGKRPMSLWSTGICFV--FTIALAICSMNL---HWPG------------W---------IPLTIF   92 (226)
Q Consensus        39 ~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i--~~~~~~~~~~~~---~~~~------------~---------~~~~~~   92 (226)
                      .+++...+...++|+++|++++-+.......  ..++... +.+.   +.+.            .         +...++
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf  149 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF  149 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence            4456677788999999999987655554444  2222222 2211   0000            0         000011


Q ss_pred             HHHHHHHhcc-ccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         93 CICFWISGYG-ILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus        93 ~~~~~~~~~~-~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      ....-..+.. ..-.-|.+++|+++.++-.+-.++...+++++..++..+..+..+
T Consensus       150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111 122458899999999999999999999999999998888777666

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0637|consensus

Probab=92.42  E-value=0.096  Score=46.06  Aligned_cols=130  Identities=12%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHH-HHHHHHHH-----hh-c
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVN----KFGKRPMSLWSTGICFV-FTIALAIC-----SM-N   80 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d----~~Grr~~~~~~~~~~~i-~~~~~~~~-----~~-~   80 (226)
                      ..|+|.+.++.|++. .....-.+.=+...+.+++.|..+|    |+|||+.++........ .++.+...     .+ .
T Consensus        52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            356778888888875 2332223333445667888899999    48999888765555444 22111110     01 1


Q ss_pred             CCCc--hHHHHHHHHHHHHHHhccc----cchhhHHhhccCCcchhhh-HHHHHHHHHHHHHHHHHHHHH
Q psy10294         81 LHWP--GWIPLTIFCICFWISGYGI----LALPWMLMSEIFPVRIRGV-ACGICAAINSIVCFLVTKTYV  143 (226)
Q Consensus        81 ~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~~p~~~R~~-~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      +...  ....+....+.....-...    +| .-++..|+.....|-+ +.+....+..+|+.++....+
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            1111  1122222222222222211    22 2357788887766666 888888888888888766554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.42  E-value=7.4  Score=34.43  Aligned_cols=137  Identities=8%  Similarity=-0.082  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHH----HHHHH-hhcCCC--chHHHHHHHH---HHHHHH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTI----ALAIC-SMNLHW--PGWIPLTIFC---ICFWIS   99 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~----~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~   99 (226)
                      ...........++.++..|.+.||..|.+....+.+.+-+...    ..... ......  ..+.....+.   .+....
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~  120 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE  120 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence            3344455556677778888899999999988877776665111    11110 111111  1122211111   111111


Q ss_pred             hccccchhhHHhhcc----C--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        100 GYGILALPWMLMSEI----F--PVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       100 ~~~~~~~~~~~~~e~----~--p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ..+.....-..--|+    .  ++..+.+..+...-.=-+...++|.+.+.+.+..+.+....+.++...+..
T Consensus       121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence            111111110111122    2  333344444444444446788999999999887787766666666666654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098|consensus

Probab=91.78  E-value=2.8  Score=37.31  Aligned_cols=104  Identities=8%  Similarity=-0.083  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      ....+.+....+.+++.+.+.|+.|.|..+.++.........+...      .+.+.....-...+.+.+.-+ .---.|
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------~N~y~~yfssallG~Gaallw-~GqG~y  126 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------PNSYYLYFSSALLGFGAALLW-TGQGGY  126 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHhhhhHHhee-ccccee
Confidence            4467777888899999999999999999999998888776655555      234544444444444444322 222347


Q ss_pred             hhccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy10294        111 MSEIFPVRIRGVACGICAAINSIVCFLVTKT  141 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  141 (226)
                      .+|..+++.+.+-.++.-.....+.+++...
T Consensus       127 lt~~st~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  127 LTSNSTRETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            8899999888888888777766666666443

>KOG4686|consensus

Probab=91.78  E-value=0.009  Score=49.55  Aligned_cols=110  Identities=10%  Similarity=0.057  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHH----HHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccc
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFV----FTIALAICSMNLHWPGWIPLTIFCICFWISGYGILA  105 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (226)
                      +..+.++.-.++-++++|++.|| +|-|..-++-+....+    +..+...       ...+.+..-.   +.++.|-.+
T Consensus        83 LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~-------~aFw~M~~GR---F~FGIGgES  152 (459)
T KOG4686|consen   83 LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS-------HAFWTMLAGR---FLFGIGGES  152 (459)
T ss_pred             eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHhhh---eeeccCchh
Confidence            34445555567778899999996 5666544332222222    1111111       1222222222   222333322


Q ss_pred             h---hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294        106 L---PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus       106 ~---~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                      .   ...|+.-+|.-|+-+.+.|+.....++|+.+.-.+.+++.+..+
T Consensus       153 lAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  153 LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             hhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            2   33477778999999999999999999999887777776666543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=91.28  E-value=1.9  Score=38.69  Aligned_cols=17  Identities=18%  Similarity=0.298  Sum_probs=12.0

Q ss_pred             HHHhcccCChHHHHHHH
Q psy10294         48 SLTVNKFGKRPMSLWST   64 (226)
Q Consensus        48 ~~l~d~~Grr~~~~~~~   64 (226)
                      +..+.|+||||..++-.
T Consensus        61 s~y~~~~GRRKSWiiP~   77 (544)
T PF13000_consen   61 SVYSKRIGRRKSWIIPI   77 (544)
T ss_pred             hhcccccCCcchhhhHH
Confidence            34445899999887644

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3626|consensus

Probab=91.02  E-value=0.57  Score=43.82  Aligned_cols=151  Identities=9%  Similarity=-0.033  Sum_probs=95.6

Q ss_pred             HHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHH-HHHHHHHHhhcC------------
Q psy10294         16 LVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFV-FTIALAICSMNL------------   81 (226)
Q Consensus        16 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i-~~~~~~~~~~~~------------   81 (226)
                      +.++-+.++++. +.++....+-++..+.....++...|.-|-+.+-++.++.++ ..+......+.+            
T Consensus       120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            344555678876 667777778888888888888888887777777778777776 222222110000            


Q ss_pred             ------------------------------CCchHHHHHHHHHHHHHHhcccc---chhhHHhhccCCcchhhhHHHHHH
Q psy10294         82 ------------------------------HWPGWIPLTIFCICFWISGYGIL---ALPWMLMSEIFPVRIRGVACGICA  128 (226)
Q Consensus        82 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~  128 (226)
                                                    +..+..++.++++.....|.|-.   +....|+-|...+++-..-.|+.+
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence                                          02222234344444444444443   344568888888888888889988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh------------------c-hhhHHHHHHHHHHHhh
Q psy10294        129 AINSIVCFLVTKTYVTSITWF------------------G-LHGTLFIYSFITGIGF  166 (226)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~------------------g-~~~~~~~~~~~~~i~~  166 (226)
                      ....+|-.++-.+++.+.+.+                  | |+.-|++.+.+.++..
T Consensus       280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            888888888877777765421                  1 4445666666666665

>TIGR00805 oat sodium-independent organic anion transporter

Probab=89.81  E-value=0.42  Score=44.31  Aligned_cols=63  Identities=13%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             cccceecccHHHHHhh-cCCCc-hHHHHHHHHHH-HHHHHHHHHHHHhcccCC--hHHHHHHHHHHHH
Q psy10294          7 SSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGV-LAITGSLVSSLTVNKFGK--RPMSLWSTGICFV   69 (226)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~-~~~~~~~~~~~l~d~~Gr--r~~~~~~~~~~~i   69 (226)
                      ...+.+..|+|.++++ +|++. +.........+ +.+++.+++|+++||+++  |+.+.++.+...+
T Consensus       344 ~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       344 LAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL  411 (633)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence            3445667789999875 78886 55555555454 567899999999999984  4666666555555

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4332|consensus

Probab=89.79  E-value=0.37  Score=39.93  Aligned_cols=49  Identities=8%  Similarity=0.049  Sum_probs=28.7

Q ss_pred             HHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Q psy10294         19 IFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGIC   67 (226)
Q Consensus        19 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~   67 (226)
                      ++++.|+.. +............++...+.|-++||-|||+....-++..
T Consensus        63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitY  112 (454)
T KOG4332|consen   63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITY  112 (454)
T ss_pred             eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHH
Confidence            344445444 3333333333344566677788999999999765444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=88.73  E-value=1.9  Score=37.72  Aligned_cols=116  Identities=12%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCc
Q psy10294         38 VLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPV  117 (226)
Q Consensus        38 ~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  117 (226)
                      +-+++..+++.+..+|+.-+.-.......+.+..+....     ..+.+..+.  .......+.+.+-+...-.+..+|+
T Consensus        70 ~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~-----~~~v~~~l~--Gv~las~ssg~GE~tfL~lt~~y~~  142 (402)
T PF02487_consen   70 LPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF-----SPSVWVRLL--GVVLASLSSGLGEVTFLSLTHFYGK  142 (402)
T ss_pred             HHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee-----ccchhHHHH--HHHHHhhhhhhhHHHHHHHHHhcCc
Confidence            344555666777778765333333333333332222233     122233333  3333344444444443333455664


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHHh
Q psy10294        118 RIRGVACGICAAINSIVCFLVTKTYVTSITWFGL--HGTLFIYSFITGIG  165 (226)
Q Consensus       118 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~i~  165 (226)
                      .    ..+-...+...++.+++.....+.+ .|+  |.++.....++.+.
T Consensus       143 ~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~  187 (402)
T PF02487_consen  143 S----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIF  187 (402)
T ss_pred             c----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHH
Confidence            2    2344444455566666666555544 554  55666666666544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=88.28  E-value=0.14  Score=46.40  Aligned_cols=143  Identities=17%  Similarity=0.186  Sum_probs=0.0

Q ss_pred             cccccceecccHHHHHhh-cCCCc-hHHHHHHHHH-HHHHHHHHHHHHHhcccC--ChHHHHHHHHHHHHHHHH---HH-
Q psy10294          5 FNSSFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTG-VLAITGSLVSSLTVNKFG--KRPMSLWSTGICFVFTIA---LA-   75 (226)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~-~~~~~~~~~~~~l~d~~G--rr~~~~~~~~~~~i~~~~---~~-   75 (226)
                      +......+..|.|.+.|. ++.+. ++........ .+..+|.+++|++..|+.  .|+...+..+...+..+.   .+ 
T Consensus       317 ~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~  396 (539)
T PF03137_consen  317 ESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFF  396 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            344566778899999875 78876 5544443333 355789999999999874  355544444444331111   11 


Q ss_pred             -HH-----------hhc-----C--------------------------C-CchHHHHHHH-HHHHHHHhccccchhhHH
Q psy10294         76 -IC-----------SMN-----L--------------------------H-WPGWIPLTIF-CICFWISGYGILALPWML  110 (226)
Q Consensus        76 -~~-----------~~~-----~--------------------------~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  110 (226)
                       .|           +..     .                          . ......+... .......+....|.. ..
T Consensus       397 ~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i  475 (539)
T PF03137_consen  397 LGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LI  475 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-ee
Confidence             11           000     0                          0 0111111111 111122222222333 23


Q ss_pred             hhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy10294        111 MSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITW  148 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  148 (226)
                      .-...|+++|+.|.|+.....++ |.+-+|.+++.++|.
T Consensus       476 ~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  476 TLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------------
T ss_pred             eeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            34678999999999999888775 567789999988875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1237|consensus

Probab=88.18  E-value=21  Score=32.83  Aligned_cols=149  Identities=10%  Similarity=-0.016  Sum_probs=81.7

Q ss_pred             HHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHH--HHHHhhc----------C--
Q psy10294         18 EIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIA--LAICSMN----------L--   81 (226)
Q Consensus        18 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~--~~~~~~~----------~--   81 (226)
                      ++..+++.+. .+........-......+.+++++|. +||-+++.++..+..+....  .......          .  
T Consensus        63 ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~  142 (571)
T KOG1237|consen   63 YLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGN  142 (571)
T ss_pred             HHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCC
Confidence            3344455554 33333444444556778899999996 58989888888877763222  2221110          0  


Q ss_pred             --CCchH--HHHHHHHHHHHHHhc-cccchhhHHhhccCCc---ch-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10294         82 --HWPGW--IPLTIFCICFWISGY-GILALPWMLMSEIFPV---RI-RG--VACGICAAINSIVCFLVTKTYVTSITWFG  150 (226)
Q Consensus        82 --~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~---~~-R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  150 (226)
                        ..+..  ..+....+.....|. +.-+....+-+|.++.   +. +.  .-..+.+.....+..++..+..+..++.+
T Consensus       143 ~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~  222 (571)
T KOG1237|consen  143 VCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG  222 (571)
T ss_pred             cccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence              00111  111222222222122 2234455677888882   22 22  34456666677777888777777778888


Q ss_pred             hhhHHHHHHHHHHHhh
Q psy10294        151 LHGTLFIYSFITGIGF  166 (226)
Q Consensus       151 ~~~~~~~~~~~~~i~~  166 (226)
                      |...|.+......+..
T Consensus       223 w~lgf~i~~~~~~lai  238 (571)
T KOG1237|consen  223 WKLGFGIPTVLNALAI  238 (571)
T ss_pred             ceeeccHHHHHHHHHH
Confidence            8776666655554443

>KOG3098|consensus

Probab=88.06  E-value=19  Score=32.16  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHHHHHHHHHhhcCC------------CchHHHHHHHHHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVN---KFGKRPMSLWSTGICFVFTIALAICSMNLH------------WPGWIPLTIFCIC   95 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d---~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~   95 (226)
                      ......+++..+++...+.+.+   ++||++.+.++..+..+..+.......++.            .+.......+..+
T Consensus       283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence            3445566677777777777775   578999888888777773333333122111            0112222222233


Q ss_pred             HHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10294         96 FWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYV  143 (226)
Q Consensus        96 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  143 (226)
                      .+..-..+....+.+..+.. ++.|..+.++.-.-..+.+.+.....+
T Consensus       363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33333334566677888888 556777777776666666655544444

>KOG3574|consensus

Probab=85.94  E-value=3.6  Score=35.89  Aligned_cols=44  Identities=18%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             cHHHHHhhcCCCc-hHHHHHHHHHHHH--HHHHHHHHHHhc-----ccCChHHHHH
Q psy10294         15 YLVEIFQTFGVPL-KSEWVLVLTGVLA--ITGSLVSSLTVN-----KFGKRPMSLW   62 (226)
Q Consensus        15 ~~~~~~~~~g~~~-~~~~~~~~~~~~~--~~~~~~~~~l~d-----~~Grr~~~~~   62 (226)
                      -.|.+++.-|.|- +..    .+.+..  .---+++.+++|     |+|||+..++
T Consensus        52 ~iP~lL~ak~vSyt~~a----~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQA----IFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             hhHHHhcCCCcchhhhh----hhhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence            5677777656654 222    222222  223567888888     9999998765

>PRK03612 spermidine synthase; Provisional

Probab=83.37  E-value=28  Score=31.63  Aligned_cols=42  Identities=12%  Similarity=0.108  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhhHHHHHHHHH
Q psy10294        121 GVACGICAAINSIVCFLVTKTYVTSI-TWFGLHGTLFIYSFIT  162 (226)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~  162 (226)
                      +...|-.+..+.+|+.+++.+.+++. ..+|...+.++.+.+.
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~  186 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN  186 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            55677888888889998888877654 4677655555444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=82.09  E-value=23  Score=30.99  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             hhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        107 PWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       107 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      .+..+.|-.|+++|-.++|.....-.+|..++..+.-.+..
T Consensus       356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44456677899999999999998888888887776655443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-06

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 15  YLVEIFQTFGVPLKSEWV-LVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
           Y  E+F+T G       +  ++ GV+ +T ++++ +TV+KFG++P+      I     +A
Sbjct: 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-----IIGALGMA 353
Query: 74  LAICSMNLHWPGWIP--LTIFCICFWISGYGILALP--WMLMSEIFPVRIRGVACGICAA 129
           + + S+   +    P  + +  + F+++ + +   P  W+L+SEIFP  IRG A  I  A
Sbjct: 354 IGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413
Query: 130 INSIVCFLVTKTY 142
              +  + V+ T+
Sbjct: 414 AQWLANYFVSWTF 426
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.62
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.57
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.53
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.44
2xut_A	524	Proton/peptide symporter family protein; transport	99.41
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.15
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.14
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.73
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.37
2xut_A	524	Proton/peptide symporter family protein; transport	98.13

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.84  E-value=3e-20  Score=162.09  Aligned_cols=182  Identities=21%  Similarity=0.261  Sum_probs=143.9

Q ss_pred             cccccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10294          3 PGFNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL   81 (226)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~   81 (226)
                      +++.++.+.+..|.|.+.++.+.+. +.........+...++.++++++.||+|||+.++.+...+.+..+.... ....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~-~~~~  365 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT-AFYT  365 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred             HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH-HHhc
Confidence            4566778888899999999988876 5556677888889999999999999999999999888887774433333 1222


Q ss_pred             CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhhHH
Q psy10294         82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT------WFGLHGTL  155 (226)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~  155 (226)
                      ....+..+.....+..+++.+.+++.+.+.+|++|++.|+++.|+....+++++++++.+.+.+.+      ..++...+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~  445 (491)
T 4gc0_A          366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY  445 (491)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            344455555555666667777888999999999999999999999999999999999988876643      34455678


Q ss_pred             HHHHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294        156 FIYSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH  199 (226)
Q Consensus       156 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~  199 (226)
                      +++++++++..              +..++++||  +|++||+|+.
T Consensus       446 ~i~~~~~~~~~--------------i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          446 WIYGCMGVLAA--------------LFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHCCCCTTCCHHHHGGG
T ss_pred             HHHHHHHHHHH--------------HHHHheecCCCCCCHHHHHHH
Confidence            88888888877              666778999  8999999887

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.62  E-value=4.4e-16  Score=131.29  Aligned_cols=151  Identities=10%  Similarity=-0.028  Sum_probs=118.7

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ....+..|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+..+..+.......      .++...
T Consensus        17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~   90 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT------TSSLTV   90 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred             HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH------hccHHH
Confidence            345566788888999988 6788889999999999999999999999999999988888874443333      122333


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      +.......+.......+....+++|.+|+++|+++.++.+....++..+++.+.+.+.++.+||..+++.+....+..
T Consensus        91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A           91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            333333333333334566677899999999999999999999999999999999998888899999998888877776

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=9.4e-16  Score=131.80  Aligned_cols=154  Identities=6%  Similarity=-0.005  Sum_probs=116.0

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP   88 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   88 (226)
                      ....+++|.+.+++ .+. +.++..+...++..++.++.|+++||+|||+.++++..+..+..+........  ..+...
T Consensus        45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~  121 (451)
T 1pw4_A           45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAV  121 (451)
T ss_dssp             TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSH
T ss_pred             HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc--cccHHH
Confidence            34556688888888 887 78888999999999999999999999999999999988888733332220000  012222


Q ss_pred             HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHhh
Q psy10294         89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGIGF  166 (226)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~  166 (226)
                      +.....+.+.......+....+++|.+|+++|+++.++......+|..+++.+.+.+.+..| ||+.+++.+++..+..
T Consensus       122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~  200 (451)
T 1pw4_A          122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA  200 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            22223333332223446667899999999999999999999999999999999999888898 9999998888776655

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.57  E-value=9.6e-15  Score=125.15  Aligned_cols=151  Identities=7%  Similarity=-0.082  Sum_probs=115.3

Q ss_pred             ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHH---HHHhhcCCCch
Q psy10294         10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL---AICSMNLHWPG   85 (226)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~   85 (226)
                      ....+..|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.++.+..+..+..+..   ..      .++
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~  116 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------IMN  116 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------TTC
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------ccc
Confidence            345567888889999998 77888999999999999999999999999999999999888844443   22      223


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc--------------
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI-TWFG--------------  150 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g--------------  150 (226)
                      ...+.....+.+.......+....+++|++|+++|+++.++.+....+|..+++.+.+.+. +..+              
T Consensus       117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  196 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ  196 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence            3333333333333233344566789999999999999999999999999999999988887 4443              


Q ss_pred             -----------hhhHHHHHHHHHHHhh
Q psy10294        151 -----------LHGTLFIYSFITGIGF  166 (226)
Q Consensus       151 -----------~~~~~~~~~~~~~i~~  166 (226)
                                 ||+.+++.+....+..
T Consensus       197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~  223 (438)
T 3o7q_A          197 LSAYKHSLVLSVQTPYMIIVAIVLLVA  223 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                       8888877776655544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.53  E-value=1.6e-14  Score=125.89  Aligned_cols=153  Identities=14%  Similarity=0.161  Sum_probs=113.3

Q ss_pred             ccceecccHHHHHhh------cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhh
Q psy10294          8 SFVSMRPYLVEIFQT------FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSM   79 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~------~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~   79 (226)
                      +.+.+..+++.+.++      +|.+. +..+..+...++..++++++|+++|| +|||+++..+..+..+..+....   
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---  104 (491)
T 4aps_A           28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---  104 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence            344455556666554      78887 67888899999999999999999999 89999999998888774443333   


Q ss_pred             cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294         80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRI--RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI  157 (226)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (226)
                        ..+.+.... ...+.+.......+....+++|++|+++  |+++.++.+....+|..+++.+.+.+.++.||++.|++
T Consensus       105 --~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          105 --PFGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             --CCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             --hhhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence              122222222 2322222222344666789999999988  77788888899999999999999999999999999988


Q ss_pred             HHHHHHHhh
Q psy10294        158 YSFITGIGF  166 (226)
Q Consensus       158 ~~~~~~i~~  166 (226)
                      .+....+..
T Consensus       182 ~~~~~~~~~  190 (491)
T 4aps_A          182 AAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.44  E-value=4.4e-13  Score=116.65  Aligned_cols=117  Identities=17%  Similarity=0.082  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc------------CCCchHHHHHHHHHHHH
Q psy10294         30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMN------------LHWPGWIPLTIFCICFW   97 (226)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~   97 (226)
                      ++..+...++..+|++++|+++||+|||++++++.++..+..+........            ....+...+...+++.+
T Consensus        58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G  137 (491)
T 4gc0_A           58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG  137 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence            355667788899999999999999999999999998888744433320000            00223444444444444


Q ss_pred             HHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294         98 ISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI  146 (226)
Q Consensus        98 ~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (226)
                      ....+..+...++++|..|+++|++..++.+.....+..+++.+.....
T Consensus       138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            4333445677889999999999999999999888888887777665554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.41  E-value=1.3e-12  Score=114.71  Aligned_cols=153  Identities=17%  Similarity=0.079  Sum_probs=112.8

Q ss_pred             cceecccHHHHHh-hcC------CCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhh
Q psy10294          9 FVSMRPYLVEIFQ-TFG------VPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSM   79 (226)
Q Consensus         9 ~~~~~~~~~~~~~-~~g------~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~   79 (226)
                      .+.+..++|.+.+ ++|      .+. +..+......++..++.+++|+++||+ |||+++..+..+..+..+....   
T Consensus        28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---  104 (524)
T 2xut_A           28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---  104 (524)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence            3445566666654 578      887 778888899999999999999999999 9999999888887774444444   


Q ss_pred             cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q psy10294         80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGI---CAAINSIVCFLVTKTYVTSITWFGLHGTLF  156 (226)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  156 (226)
                        ...+...+.....+.+.......+....+++|.+|+++|+++.+.   .+....+|..+++.+.+.+.+..||++.|+
T Consensus       105 --~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~  182 (524)
T 2xut_A          105 --FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG  182 (524)
T ss_dssp             --TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred             --hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence              121222233233332322233446667889999999999877666   888889999999999999888899999988


Q ss_pred             HHHHHHHHhh
Q psy10294        157 IYSFITGIGF  166 (226)
Q Consensus       157 ~~~~~~~i~~  166 (226)
                      +.+...++..
T Consensus       183 ~~~~~~~~~~  192 (524)
T 2xut_A          183 IPGVLMFVAT  192 (524)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777665544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=1.3e-12  Score=112.16  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             ccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHH-HHHHHHHHhhcCC
Q psy10294          8 SFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMSLWSTGICFV-FTIALAICSMNLH   82 (226)
Q Consensus         8 ~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~~~~~~~~~i-~~~~~~~~~~~~~   82 (226)
                      +.+.+..+.|.+.++ +|.+. +..+......++.+++.++.+++.||+  |||+.+..+..+... ..+....   ...
T Consensus       267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  343 (451)
T 1pw4_A          267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NPA  343 (451)
T ss_dssp             HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CCT
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hcc
Confidence            345567788888887 78887 667788888899999999999999999  999988877666553 2222111   111


Q ss_pred             CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         83 WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ...+.........+. ...+..+..+.+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..|++..+++.+++
T Consensus       344 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  422 (451)
T 1pw4_A          344 GNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  422 (451)
T ss_dssp             TCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            122222222222222 22233455567899999999999999999999999 9999999999999999998888887777


Q ss_pred             HHHhh
Q psy10294        162 TGIGF  166 (226)
Q Consensus       162 ~~i~~  166 (226)
                      .++..
T Consensus       423 ~~~~~  427 (451)
T 1pw4_A          423 SILAV  427 (451)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76665

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.15  E-value=6.1e-10  Score=95.12  Aligned_cols=147  Identities=13%  Similarity=0.077  Sum_probs=107.3

Q ss_pred             ceecccHHHH-Hhhc-CCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294         10 VSMRPYLVEI-FQTF-GVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW   86 (226)
Q Consensus        10 ~~~~~~~~~~-~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (226)
                      ..+..+.|.+ .++. |.+. +.........++..++.++.++++||+|||+.+..+..+..+..+....      .+..
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~  348 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGH  348 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------cCCc
Confidence            3455778888 7764 8887 6677788888999999999999999999999998888777764444444      1222


Q ss_pred             HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHh
Q psy10294         87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGIG  165 (226)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~  165 (226)
                      .........+.+.+ ...+..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..+++.+....+.
T Consensus       349 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          349 VGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22333333333332 34466777878999977 888888877 677999999999999999998 888777655544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.14  E-value=2.7e-11  Score=103.83  Aligned_cols=130  Identities=12%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      ....+..+...++.++.++++||+|||+.+..+..+..+.......     ..+.+.............+ ...+..+.+
T Consensus       263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~  336 (417)
T 2cfq_A          263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVP-FLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CCSHHHHHHHTTHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4455666677889999999999999999988777666553222222     1222222222222222211 222345678


Q ss_pred             hhccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        111 MSEIFPVRIRGVACGIC-AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ++|.+|++.|+++.++. +....+++.++|.+.+.+.+..|++..|...+.+.++..
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~  393 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            99999999999999985 777889999999999999888888777877777766665

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.96  E-value=4.4e-10  Score=97.68  Aligned_cols=154  Identities=7%  Similarity=-0.055  Sum_probs=96.2

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHH-----HHHHHHHHHHHHHHHHh-h---
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSL-----WSTGICFVFTIALAICS-M---   79 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~~-~---   79 (226)
                      ....+.|.+.++ .+.+. +.........+...++.++.+++.||+|||+...     .+..+..+......... .   
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344556666665 45553 4556667778888888999999999999987654     44444444221111100 0   


Q ss_pred             cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy10294         80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYS  159 (226)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  159 (226)
                      ....+.+.........+.+. ....+..+.++.|.+|++.|+++.|+.+....++..+++.+.+.+.+. ++...+...+
T Consensus       381 ~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~  458 (491)
T 4aps_A          381 SGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFG  458 (491)
T ss_dssp             CTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTH
T ss_pred             CCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            01112223332233322222 233566778999999999999999999999999999999988776543 5556677666


Q ss_pred             HHHHHhh
Q psy10294        160 FITGIGF  166 (226)
Q Consensus       160 ~~~~i~~  166 (226)
                      .+..+..
T Consensus       459 ~~~~~~~  465 (491)
T 4aps_A          459 LGSVVLG  465 (491)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.73  E-value=4.6e-10  Score=96.14  Aligned_cols=149  Identities=11%  Similarity=0.017  Sum_probs=87.5

Q ss_pred             cceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcCCCch
Q psy10294          9 FVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAIC-SMNLHWPG   85 (226)
Q Consensus         9 ~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~   85 (226)
                      .....+++|.+.++ +|.+. +..+..+...++..++++++|+++||+|||++++++..+..+........ ........
T Consensus        23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (417)
T 2cfq_A           23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN  102 (417)
T ss_dssp             HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34446788887765 79887 77888889999999999999999999999999988777665411111100 00000000


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPV--RIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI  161 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  161 (226)
                      ..  ..........+.... .......+..++  +.|+.+.+.....+.+|..++|.+.+++.+ .+|+..|++.+..
T Consensus       103 ~~--~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~  176 (417)
T 2cfq_A          103 IL--VGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC  176 (417)
T ss_dssp             CC--HHHHGGGSSTTHHHH-TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred             HH--HHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence            00  000000000111111 111122233322  456666777777778888888988888776 4788776654443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.37  E-value=2e-08  Score=84.10  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHH-HHH--HHHHHHHHhhcCCCch
Q psy10294         11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI-CFV--FTIALAICSMNLHWPG   85 (226)
Q Consensus        11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~-~~i--~~~~~~~~~~~~~~~~   85 (226)
                      ....+.|.+.++ .|.+. +.........++..++.++.+++.||+|||.  ..+... ...  ....... . . ..+.
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~-~-~-~~~~  291 (375)
T 2gfp_A          217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDW-F-G-VMNV  291 (375)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHH-H-H-HHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-h-c-cccH
Confidence            344556666555 56665 4566677778888889999999999988732  223322 111  1111111 0 0 0112


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294         86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI  157 (226)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (226)
                      +.........+.+.+ ...+....+..|..| ++|+++.|+.+....++..+++.+.+.+.+..+++..+..
T Consensus       292 ~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          292 WTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            222222233333333 234666778889998 8999999999999999999999998888877777655444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.13  E-value=9.1e-07  Score=77.32  Aligned_cols=45  Identities=11%  Similarity=0.059  Sum_probs=39.4

Q ss_pred             ccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294        103 ILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT  147 (226)
Q Consensus       103 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (226)
                      ..+..+.+..|..|++.|+++.|+.+....+++.+++.+.+.+.+
T Consensus       422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345666788999999999999999999999999999999887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.56
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.36
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.23
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.0

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.1e-15  Score=125.03  Aligned_cols=151  Identities=7%  Similarity=0.004  Sum_probs=108.6

Q ss_pred             cccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy10294         13 RPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTI   91 (226)
Q Consensus        13 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   91 (226)
                      ....|. .+++|++. +.++..+...++..++++++|+++||+|||+++..+.++..+..+........  ......+..
T Consensus        45 ~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  121 (447)
T d1pw4a_          45 ALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFV  121 (447)
T ss_dssp             HHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHH
T ss_pred             HHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh--hhhHHHHHH
Confidence            334454 45679988 88899999999999999999999999999999999988887743333220000  112222222


Q ss_pred             HHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHhh
Q psy10294         92 FCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWF-GLHGTLFIYSFITGIGF  166 (226)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~  166 (226)
                      .....+.......+....+++|.+|+++|+++.++.+....+|..+++.+.....+.. +|++.+++.+.+..+..
T Consensus       122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  197 (447)
T d1pw4a_         122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA  197 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHH
Confidence            3332232222334556678999999999999999999999999999998887766654 78888888777766655

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.1e-12  Score=109.80  Aligned_cols=156  Identities=16%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             ceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      +....+.|.+.++ .+.+. +.........+...++.++.+++.||++||+...........................+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV  345 (447)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred             hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH
Confidence            3455667777765 57776 567778888889999999999999999998765544444433222222211111222233


Q ss_pred             HHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294         88 PLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIV-CFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ........ +....+..+..+.+..|.+|++.|+++.|+.+..++++ ..+++.+.+.+.+++||+..++.......+..
T Consensus       346 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         346 DMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHHHHHHH-HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            33322222 22233344566778999999999999999998888875 56678889999999999888877776666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.5e-11  Score=99.22  Aligned_cols=130  Identities=12%  Similarity=0.149  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294         31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML  110 (226)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (226)
                      .......+...++..+.+++.||+|||+.+..+..+..+..+....     ..+.+.........+.+.+ ...+....+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~-~~~~~~~~~  336 (417)
T d1pv7a_         263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVP-FLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-----ccccchhhHHHHHHHHHHH-HHHHHHHHH
Confidence            3445566677788889999999999999999888887775444444     2333333333333333333 234566778


Q ss_pred             hhccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294        111 MSEIFPVRIRGVACGICA-AINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF  166 (226)
Q Consensus       111 ~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  166 (226)
                      ++|.+|++.|+++.++.. ....++..+++.+.+++.+++|++..+++.+++.++..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~  393 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            999999999999999864 45678999999999999999999999988888877765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=7.5e-11  Score=96.33  Aligned_cols=151  Identities=12%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             ceecccHHHHHh-hcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy10294         10 VSMRPYLVEIFQ-TFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWI   87 (226)
Q Consensus        10 ~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   87 (226)
                      ....+++|.+++ ++|.+. +.++..+...+...+++++.|+++||+|||+.++++..+..+........    ......
T Consensus        24 ~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~----~~~~~~   99 (417)
T d1pv7a_          24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF----IFGPLL   99 (417)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH----THHHHH
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh----hhhhhH
Confidence            344567777665 579998 77888999999999999999999999999999998888777733332220    011111


Q ss_pred             H---HHHHHHHHHHHhccccchhhHHhhccCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy10294         88 P---LTIFCICFWISGYGILALPWMLMSEIFP--VRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFIT  162 (226)
Q Consensus        88 ~---~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  162 (226)
                      .   +..........+....+... ...+..+  .+.+....+........+..+++.+.+.+.+. +|+..+.......
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  177 (417)
T d1pv7a_         100 QYNILVGSIVGGIYLGFCFNAGAP-AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCA  177 (417)
T ss_dssp             HTTCHHHHHHTTTTGGGGGTTHHH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcccccccchhh-cccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHH
Confidence            1   11111111111111111111 1112222  23344455666666777778888887777665 4444555544444


Q ss_pred             HHhh
Q psy10294        163 GIGF  166 (226)
Q Consensus       163 ~i~~  166 (226)
                      .+..
T Consensus       178 ~~~~  181 (417)
T d1pv7a_         178 LILA  181 (417)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443