Psyllid ID: psy1031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MPRPKRQSTGRSPSDPDLYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNTL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEEcEEEEEEccEEEEEEEccccccHHHHHHHHHHHccccccccEEccccccEEEEccccccccHHcHHHHHHcccccccccccccccccccEEEEEcccccEEEEEEEccEEEEcEEEEEEccEEEEccccccccHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHcccccccccccccHHHHHHHHcccccccccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHcccccccccccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHccccccHHHHHHHHHHHHccccEEEEEEcccEEEHccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccEEEccEEEccccHHHHccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHEHcHHHEHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccEEEEEEEEccccccEEEEEEcccccccHHHHHHHHHcccccccccccccccEcccccEEEEEcccEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEcccccc
Coil and Loop (DISEMBL)
mprpkrqstgrspsdpdlyriLQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAmgvggasnVNQLQDVIQNLHCWcnenlmvlnlekckvmsfytnkhpilinyninnvqlervnnikdLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRhtqdfkhpktltnLYYTYVRSCLEYCstvwspqyETHIKSLESVQHKFLIMLAFKSftriddhnydnimaANKITSLKNRRDMQDLVFIYKVLHNLiyspeilsnfnlkvplrktrscdMFVLeknktnigefspiQRMEKIGnhitsgaggdptgtgrggssiygkTFADEIHEELKHTGAGilsmansgpdtngsqffitlaptqwldgkhaiFGRIYSGMSVVKRIGlvetdkndrpvddvKILKTHVRNTL
Flexible Loop (DISEMBL)
mprpkrqstgrspsdpdlyRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRhtqdfkhpktLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANkitslknrrDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEknktnigefspiQRMEKIGNHItsgaggdptgtgrGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGlvetdkndrpvddvkilkthvrntl
Low Complexity Region (SEG)
MPRPKRQSTGRSPSDPDLYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHItsgaggdptgtgrggssIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNTL
Disordered region (IsUnstruct)
*****************LYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPI***************************IYGKTFADEIHEELKHTGAGIL**********GSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD********************
Disordered Region (DISOPRED)
************************************************EIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSP**************KFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVET*KNDRPVDDVKILKTHVRN**
Disordered Region (DISEMBL)
**************DPDLYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNTL
Disordered Region (DISPRO)
*************SDPDLYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRPKRQSTGRSPSDPDLYRILQDEDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYNLKFNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKITSLKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9D0W5	166	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.572	0.75	4e-41
Q4WCR3	161	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.590	0.76	8e-41
Q9Y3C6	166	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.572	0.74	8e-41
Q5E992	166	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.572	0.74	8e-41
Q7SF72	163	Peptidyl-prolyl cis-trans	N/A	N/A	0.210	0.588	0.742	1e-40
Q5ASQ0	162	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.586	0.75	2e-40
Q2U6U0	161	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.590	0.75	2e-40
Q4I1Y1	162	Peptidyl-prolyl cis-trans	yes	N/A	0.210	0.592	0.732	2e-39
Q8X191	162	Peptidyl-prolyl cis-trans	yes	N/A	0.208	0.586	0.74	5e-39
P87051	155	Peptidyl-prolyl cis-trans	yes	N/A	0.206	0.606	0.727	9e-39

>sp|Q9D0W5|PPIL1_MOUSE Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 88/100 (88%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTH 451
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKILK +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKILKAY 163

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q4WCR3|PPIL1_ASPFU Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp1 PE=3 SV=1

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 88/100 (88%)

Query: 353 GDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG 412
           GDPTGTGRGGSSIYG+ F DEIH  LKHTGAG+LSMANSGP+TNGSQFFITLAPT WLDG
Sbjct: 56  GDPTGTGRGGSSIYGEKFEDEIHPGLKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDG 115

Query: 413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           KH IFGR+ SGM V++R+GLV+T+  DRPVD+VKI++  V
Sbjct: 116 KHTIFGRVKSGMRVIQRMGLVKTNSEDRPVDEVKIIRAKV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9Y3C6|PPIL1_HUMAN Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 88/100 (88%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTH 451
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKI+K +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5E992|PPIL1_BOVIN Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 88/100 (88%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTH 451
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKI+K +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY 163

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7SF72|PPIL1_NEUCR Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-1 PE=3 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 86/101 (85%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGGSSIYG+ F DEIH  LKHTGAG+LSMAN+GP+TNGSQFFITLAPT WLD
Sbjct: 55  GGDPTGTGRGGSSIYGEKFEDEIHPGLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLD 114

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IFGR+  GM V++R+G+V TDK DRP  +VKI+K  V
Sbjct: 115 GKHTIFGRVKKGMGVIRRMGMVPTDKEDRPATEVKIVKARV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5ASQ0|PPIL1_EMENI Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp1 PE=3 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 88/100 (88%)

Query: 353 GDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG 412
           GDPTGTGRGGSSIYG+ F DEI  +LKHTGAGILSMANSGP+TNGSQFFITLAPT WLDG
Sbjct: 56  GDPTGTGRGGSSIYGEKFEDEIRSDLKHTGAGILSMANSGPNTNGSQFFITLAPTPWLDG 115

Query: 413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           KH IFGR+ SGM +++R+GLV+T+  DRP+D+VKIL+  V
Sbjct: 116 KHTIFGRVKSGMRIIQRMGLVKTNNEDRPLDEVKILRAKV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2U6U0|PPIL1_ASPOR Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp1 PE=3 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 88/100 (88%)

Query: 353 GDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG 412
           GDPTGTGRGGSSIYG+ F DEI  +LKHTGAGILSMANSGP+TNGSQFF+TLAPT WLDG
Sbjct: 56  GDPTGTGRGGSSIYGEKFEDEIRADLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDG 115

Query: 413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           KH IFGR+ SGM V++R+GLV+T+  DRPVD+VKI++  V
Sbjct: 116 KHTIFGRVKSGMRVIQRMGLVKTNGEDRPVDEVKIIRARV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4I1Y1|PPIL1_GIBZE Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CYP1 PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 86/101 (85%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGGSSI+G+ F DEI   LKHTGAGILSMAN+GP+TNGSQFF+TLAPT WLD
Sbjct: 55  GGDPTGTGRGGSSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLD 114

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IFGR+ SGM  +KR+GLV+T   DRPV++VKI+K  V
Sbjct: 115 GKHTIFGRVKSGMGTIKRMGLVKTGSEDRPVEEVKIVKARV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8X191|PPIL1_ASPNG Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 85/100 (85%)

Query: 353 GDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG 412
           GDPTGTGRGGSSIYG+ F DEI+  LKHTGAGILSMANSGP+ NGSQFFITLAP  WLDG
Sbjct: 56  GDPTGTGRGGSSIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDG 115

Query: 413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           KH IFGR+ SGM V++R+GLV+T+  DRPVD VKIL+  +
Sbjct: 116 KHTIFGRVKSGMRVIQRMGLVKTNSEDRPVDGVKILRARI 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P87051|PPIL1_SCHPO Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppi1 PE=1 SV=1

 Score =  161 bits (408), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 85/99 (85%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYG  F DEIH +L HTGAGILSMAN+GP+TN SQFFITLAPT WLD
Sbjct: 54  GGDPTGTGRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLD 113

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
           GKH IFGR+ SG+SV KR+GL+ TD +DRP++ +KI+K 
Sbjct: 114 GKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKIIKA 152

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
307192322	172	Peptidyl-prolyl cis-trans isomerase-like	0.217	0.575	0.826	8e-46
321459153	169	hypothetical protein DAPPUDRAFT_61631 [D	0.212	0.573	0.843	1e-45
307186394	175	Peptidyl-prolyl cis-trans isomerase-like	0.217	0.565	0.846	1e-45
270483889	174	peptidyl-prolyl cis-trans isomerase [Nas	0.214	0.563	0.825	2e-45
332021566	172	Peptidyl-prolyl cis-trans isomerase-like	0.217	0.575	0.826	3e-45
383857899	172	PREDICTED: peptidyl-prolyl cis-trans iso	0.217	0.575	0.817	4e-45
91078828	175	PREDICTED: similar to AGAP012376-PA [Tri	0.210	0.548	0.871	5e-45
322782510	171	hypothetical protein SINV_11820 [Solenop	0.214	0.573	0.834	6e-45
340724072	172	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.217	0.575	0.807	2e-44
170056532	176	cyclophilin [Culex quinquefasciatus] gi|	0.210	0.545	0.861	5e-44

>gi|307192322|gb|EFN75588.1| Peptidyl-prolyl cis-trans isomerase-like 1 [Harpegnathos saltator]

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 98/104 (94%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAG+LSMAN+GPDTNGSQFFITLAPTQWLD
Sbjct: 69  GGDPTGTGKGGMSIYGECFDDEIHDDLKHTGAGVLSMANTGPDTNGSQFFITLAPTQWLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
           GKH IFGR+YSGM++VKRIGLVETDKNDRPVDDVK++K  V+NT
Sbjct: 129 GKHTIFGRVYSGMAIVKRIGLVETDKNDRPVDDVKVVKGSVKNT 172

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459153|gb|EFX70210.1| hypothetical protein DAPPUDRAFT_61631 [Daphnia pulex]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 97/102 (95%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYG+ F+DE+H+ELKHTGAGILSMANSGP+TNGSQFFITLAPTQWLD
Sbjct: 66  GGDPTGTGRGGASIYGRNFSDELHDELKHTGAGILSMANSGPNTNGSQFFITLAPTQWLD 125

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR 453
           GKH+IFGRIYSGMSVVKRIG VETDK+DRP DDVKI+K  ++
Sbjct: 126 GKHSIFGRIYSGMSVVKRIGFVETDKDDRPTDDVKIVKCTIK 167

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186394|gb|EFN72028.1| Peptidyl-prolyl cis-trans isomerase-like 1 [Camponotus floridanus]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 97/104 (93%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 72  GGDPTGTGKGGMSIYGECFDDEIHDDLKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 131

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
           GKH IFGR++SGM++VKRIGLVETDKNDRPVDDVKI+K  VRN 
Sbjct: 132 GKHTIFGRVHSGMNIVKRIGLVETDKNDRPVDDVKIVKGSVRNA 175

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270483889|ref|NP_001162018.1| peptidyl-prolyl cis-trans isomerase [Nasonia vitripennis]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 98/103 (95%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG+SIYG+ F DEIH++LKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 71  GGDPTGTGKGGTSIYGECFDDEIHDDLKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 130

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
           GKHAIFGR+++GM++VKRIGLVETDKNDRP+DDVKI K  ++N
Sbjct: 131 GKHAIFGRVHTGMAIVKRIGLVETDKNDRPIDDVKITKGSIKN 173

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021566|gb|EGI61931.1| Peptidyl-prolyl cis-trans isomerase-like 1 [Acromyrmex echinatior]

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 98/104 (94%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAGILSMANSGPDTNGSQFF+TLAPTQWLD
Sbjct: 69  GGDPTGTGKGGMSIYGECFDDEIHDDLKHTGAGILSMANSGPDTNGSQFFVTLAPTQWLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
           GKH+IFGR++SGM++VKRIGLVETDKNDRPVDDVKI+K  V+N 
Sbjct: 129 GKHSIFGRVHSGMTIVKRIGLVETDKNDRPVDDVKIVKGSVKNA 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857899|ref|XP_003704441.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Megachile rotundata]

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 97/104 (93%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAG++SMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 69  GGDPTGTGKGGVSIYGECFDDEIHDDLKHTGAGVVSMANSGPDTNGSQFFITLAPTQWLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
           GKH IFGRI+SGM++VKRIGLVETDKNDRPVDD+KI+K  +RN 
Sbjct: 129 GKHTIFGRIHSGMAIVKRIGLVETDKNDRPVDDIKIVKGSIRNA 172

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078828|ref|XP_971205.1| PREDICTED: similar to AGAP012376-PA [Tribolium castaneum] gi|270004124|gb|EFA00572.1| hypothetical protein TcasGA2_TC003442 [Tribolium castaneum]

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/101 (87%), Positives = 95/101 (94%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+TF DEIH ELKH+GAGILSMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 72  GGDPTGTGKGGLSIYGQTFKDEIHPELKHSGAGILSMANSGPDTNGSQFFITLAPTQWLD 131

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKHAIFGRI SGM+VVKRIGLVETDKNDRPVD+VKI++  V
Sbjct: 132 GKHAIFGRIQSGMNVVKRIGLVETDKNDRPVDEVKIIRGKV 172

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782510|gb|EFZ10459.1| hypothetical protein SINV_11820 [Solenopsis invicta]

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 97/103 (94%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 69  GGDPTGTGKGGMSIYGECFDDEIHDDLKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
           GKH IFGR+++GM++VKRIGLVETDKNDRPVDDVKI+K  V+N
Sbjct: 129 GKHTIFGRVHTGMAIVKRIGLVETDKNDRPVDDVKIVKGSVKN 171

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724072|ref|XP_003400409.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase-like 1-like [Bombus terrestris] gi|350420846|ref|XP_003492645.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Bombus impatiens]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 97/104 (93%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEIH++LKHTGAG++SMANSGP+TNGSQFFITLAPTQWLD
Sbjct: 69  GGDPTGTGKGGVSIYGECFDDEIHDDLKHTGAGVVSMANSGPNTNGSQFFITLAPTQWLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
           GKH IFGRI+SGM++VKRIGLVETDKNDRPVDD+KI+K  +RN 
Sbjct: 129 GKHTIFGRIHSGMTIVKRIGLVETDKNDRPVDDIKIVKGSIRNA 172

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056532|ref|XP_001864072.1| cyclophilin [Culex quinquefasciatus] gi|167876169|gb|EDS39552.1| cyclophilin [Culex quinquefasciatus]

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 93/101 (92%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGGSSIYG TFADE++ +LKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD
Sbjct: 73  GGDPTGTGRGGSSIYGATFADELNGDLKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 132

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IFGRI++GM VVKRIGL ETDKNDRPV+ VKILK  V
Sbjct: 133 GKHTIFGRIHTGMQVVKRIGLAETDKNDRPVEQVKILKGKV 173

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
FB|FBgn0035141	176	Cypl "Cyclophilin-like" [Droso	0.192	0.5	0.806	1.3e-57
MGI|MGI:1916066	166	Ppil1 "peptidylprolyl isomeras	0.190	0.524	0.724	6.9e-53
RGD|1309119	166	Ppil1 "peptidylprolyl isomeras	0.190	0.524	0.724	8.7e-53
UNIPROTKB|F1LUK7	165	Ppil1 "Peptidyl-prolyl cis-tra	0.190	0.527	0.724	8.7e-53
UNIPROTKB|Q5E992	166	PPIL1 "Peptidyl-prolyl cis-tra	0.190	0.524	0.712	1.4e-52
UNIPROTKB|E2RPE2	166	PPIL1 "Peptidyl-prolyl cis-tra	0.190	0.524	0.712	1.4e-52
UNIPROTKB|Q9Y3C6	166	PPIL1 "Peptidyl-prolyl cis-tra	0.190	0.524	0.712	1.4e-52
UNIPROTKB|F2Z542	166	PPIL1 "Uncharacterized protein	0.190	0.524	0.712	1.4e-52
ZFIN|ZDB-GENE-051009-1	166	ppil1 "peptidylprolyl isomeras	0.192	0.530	0.704	1.4e-50
WB|WBGene00000888	169	cyn-12 [Caenorhabditis elegans	0.190	0.514	0.678	1.1e-46

FB|FBgn0035141 Cypl "Cyclophilin-like" [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 71/88 (80%), Positives = 80/88 (90%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYG  FADE+H +L+HTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKH IFGR+Y+GM
Sbjct:    86 IYGSEFADELHGDLRHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHTIFGRVYTGM 145

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
              VVKRIG+VETDKNDRPVD ++I+K  V
Sbjct:   146 EVVKRIGMVETDKNDRPVDPLRIIKAKV 173

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0048042 "regulation of post-mating oviposition" evidence=NAS

GO:0006457 "protein folding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

MGI|MGI:1916066 Ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 63/87 (72%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKILK +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKILKAY 163

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|1309119 Ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 355 (130.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 63/87 (72%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKILK +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKILKAY 163

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1LUK7 Ppil1 "Peptidyl-prolyl cis-trans isomerase" [Rattus norvegicus (taxid:10116)]

 Score = 355 (130.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 63/87 (72%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    76 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 135

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKILK +
Sbjct:   136 GMVNRVGMVETNSQDRPVDDVKILKAY 162

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|Q5E992 PPIL1 "Peptidyl-prolyl cis-trans isomerase-like 1" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKI+K +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E2RPE2 PPIL1 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKI+K +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9Y3C6 PPIL1 "Peptidyl-prolyl cis-trans isomerase-like 1" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKI+K +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z542 PPIL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 62/87 (71%), Positives = 75/87 (86%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              +V R+G+VET+  DRPVDDVKI+K +
Sbjct:   137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-051009-1 ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Danio rerio (taxid:7955)]

 Score = 348 (127.6 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 62/88 (70%), Positives = 75/88 (85%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYGK F DE H ELK TGAGIL+MAN+GPDTNGSQFF++LAPTQWLDGKH IFGR+  G+
Sbjct:    77 IYGKQFEDEFHPELKFTGAGILAMANAGPDTNGSQFFLSLAPTQWLDGKHTIFGRVCQGI 136

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
              V+ RIG+VET+  DRPVDD+KIL+ ++
Sbjct:   137 GVLNRIGMVETNSQDRPVDDIKILRVNL 164

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

WB|WBGene00000888 cyn-12 [Caenorhabditis elegans (taxid:6239)]

 Score = 318 (117.0 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 59/87 (67%), Positives = 72/87 (82%)

Query:   365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
             IYG  F+DEI E LKHTGAGILSMAN+GP+TNGSQFFITLAPTQ LDGKH IFGR+ +GM
Sbjct:    75 IYGDKFSDEIDERLKHTGAGILSMANAGPNTNGSQFFITLAPTQHLDGKHTIFGRVAAGM 134

Query:   425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
              V+  +G V+TD +DRP  +++ILK +
Sbjct:   135 KVIANMGRVDTDNHDRPKIEIRILKAY 161

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E992	PPIL1_BOVIN	5, ., 2, ., 1, ., 8	0.74	0.2083	0.5722	yes	N/A
Q4I1Y1	PPIL1_GIBZE	5, ., 2, ., 1, ., 8	0.7326	0.2105	0.5925	yes	N/A
Q9D0W5	PPIL1_MOUSE	5, ., 2, ., 1, ., 8	0.75	0.2083	0.5722	yes	N/A
Q5ASQ0	PPIL1_EMENI	5, ., 2, ., 1, ., 8	0.75	0.2083	0.5864	yes	N/A
Q8X191	PPIL1_ASPNG	5, ., 2, ., 1, ., 8	0.74	0.2083	0.5864	yes	N/A
Q9NI62	CYPE_DICDI	5, ., 2, ., 1, ., 8	0.6666	0.2149	0.6282	yes	N/A
Q4WCR3	PPIL1_ASPFU	5, ., 2, ., 1, ., 8	0.76	0.2083	0.5900	yes	N/A
Q9Y3C6	PPIL1_HUMAN	5, ., 2, ., 1, ., 8	0.74	0.2083	0.5722	yes	N/A
P0CP84	PPIL1_CRYNJ	5, ., 2, ., 1, ., 8	0.7187	0.1666	0.4367	yes	N/A
Q2U6U0	PPIL1_ASPOR	5, ., 2, ., 1, ., 8	0.75	0.2083	0.5900	yes	N/A
P87051	PPIL1_SCHPO	5, ., 2, ., 1, ., 8	0.7272	0.2061	0.6064	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	456
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	3e-55
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-48
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	8e-42
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	5e-41
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	3e-40
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	4e-38
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-37
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	8e-34
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-33
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	6e-31
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-28
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	8e-27
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	7e-24
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	1e-18
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	4e-18
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	1e-17
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	1e-13
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-12
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	4e-12
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	9e-12
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	3e-10
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	8e-10
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	8e-09
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	1e-08
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-07
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-07
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	4e-07
cd01650	220	cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term	4e-07
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	4e-06
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	2e-05
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	4e-05
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	6e-05
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	0.002
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	0.003

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  180 bits (457), Expect = 3e-55
 Identities = 74/98 (75%), Positives = 84/98 (85%), Gaps = 1/98 (1%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DEIH ELKHTGAGILSMAN+GP+TNGSQFFITLAPT WLD
Sbjct: 50  GGDPTGTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLD 109

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILK 449
           GKH IFGR+  GM V++ +  V+T   DRP+D+VKILK
Sbjct: 110 GKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  162 bits (411), Expect = 3e-48
 Identities = 60/97 (61%), Positives = 70/97 (72%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDPTG G GG SI+GK F DE    LKH     LSMAN+GP+TNGSQFFIT   T WLD
Sbjct: 50  TGDPTGDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLD 109

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL 448
            KH +FGR+  GM VV+RI  V+TDKNDRP +D+KI+
Sbjct: 110 NKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKII 146

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  145 bits (368), Expect = 8e-42
 Identities = 56/101 (55%), Positives = 69/101 (68%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG SI+GK F DE    L H G G+LSMANSGP+TNGSQFFIT    + LD
Sbjct: 52  GGDPTGTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLD 111

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH +FGR+  G+  ++ +  V     DRP +++KI  T V
Sbjct: 112 GKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSV 152

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  143 bits (363), Expect = 5e-41
 Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG+ F DE + +LKHTG G+LSMAN+GP+TNGSQFFIT   T WL
Sbjct: 66  GGDFTRGNGTGGKSIYGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWL 124

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM VVK+I  V +  N +P   V I
Sbjct: 125 DGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVI 160

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  140 bits (356), Expect = 3e-40
 Identities = 55/98 (56%), Positives = 64/98 (65%), Gaps = 1/98 (1%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG GGS   G  F DE      H   G LSMAN+GP+TNGSQFFIT APT  LD
Sbjct: 50  GGDPTGTGGGGS-GPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLD 108

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILK 449
           GKH +FG++  GM VV +I   +TD+N RP+  V I  
Sbjct: 109 GKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  136 bits (344), Expect = 4e-38
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG GG SIYG+ F DE H  L+    G++ MAN+G D+NGSQFF TL     L+
Sbjct: 58  GGDPTGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELN 117

Query: 412 GKHAIFGRIYSGMSV--VKRIGLVETDKNDRPVDDVKILKTHV 452
            KH +FG++ +G ++  + ++  VETDK++RPV   KI    V
Sbjct: 118 NKHTLFGKV-TGDTIYNLLKLAEVETDKDERPVYPPKITSVEV 159

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  134 bits (338), Expect = 2e-37
 Identities = 49/96 (51%), Positives = 67/96 (69%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDPTGTG+GG SI+GK F DE  E LKH   G++SMAN+GP+TNGSQFFIT A    LD
Sbjct: 53  TGDPTGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLD 112

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           GK+ +FG++  G   +  +  +  DK  RP+++++I
Sbjct: 113 GKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRI 148

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  124 bits (313), Expect = 8e-34
 Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 10/105 (9%)

Query: 352 GGDPTGT-GRGGSSIYGKTFADEIHEELKHT-GAGILSMANSG-PDTNGSQFFITLAPTQ 408
           GGDPTG  G GG       F DE           G LSMA +G P++NGSQFFIT+    
Sbjct: 52  GGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNP 108

Query: 409 WLDGKHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILK 449
           +LDGK+ +FG++  GM VV +I   +TD      D P D VKIL 
Sbjct: 109 FLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  123 bits (310), Expect = 1e-33
 Identities = 52/99 (52%), Positives = 63/99 (63%), Gaps = 6/99 (6%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTG G GG     ++  DE   +LKH   G LSMA SGP++ GSQFFITL     LD
Sbjct: 52  GGDPTGPGTGG----KRSIPDEFVSKLKHK-RGTLSMARSGPNSAGSQFFITLGDAPHLD 106

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
           G + +FGR+  GM VV++I  VETD  DRP+ DVKI   
Sbjct: 107 GGYTVFGRVVEGMDVVEKIEKVETD-GDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  117 bits (294), Expect = 6e-31
 Identities = 50/97 (51%), Positives = 64/97 (65%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYG+ F DE + +LKH   G+LSMAN+GP+TNGSQFFIT  P  WL
Sbjct: 82  GGDITNHNGTGGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWL 140

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM VV+ +    T ++  P   V +
Sbjct: 141 DGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVV 176

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  111 bits (279), Expect = 1e-28
 Identities = 52/92 (56%), Positives = 61/92 (66%), Gaps = 3/92 (3%)

Query: 352 GGD-PTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD   G G G  SIYG  F DE +   KHTG G+LSMANSGP+TNG QFFIT A   WL
Sbjct: 84  GGDFLKGDGTGCVSIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWL 142

Query: 411 DGKHAIFGRIY-SGMSVVKRIGLVETDKNDRP 441
           D KH +FGR+   G+ VV++I  V T  N+RP
Sbjct: 143 DNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 174

Length = 186

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  105 bits (264), Expect = 8e-27
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)

Query: 353 GDPTGTGRGGSSIYGKT-------FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLA 405
           GDPTGTG GG SIY +        F  EI   LKH+  G +SM N+G + NGSQF+ITL 
Sbjct: 51  GDPTGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLG 110

Query: 406 P-TQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
               +LDGKH +FG++  G  V+++I     D + RP+ D++I  TH+
Sbjct: 111 ENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHI 158

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 96.8 bits (241), Expect = 7e-24
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 55  LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGG 109
            +   MGEI +ELYW HAP TC+NF EL +R YYNG  FHR+I+DFMIQ       G GG
Sbjct: 1   TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGG 60

Query: 110 AS 111
           AS
Sbjct: 61  AS 62

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA------MGVGGAS 111
           N G+I +ELY   AP T  NF +L +  +Y+G  FHR+I  FMIQ        G GG  
Sbjct: 7   NKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG 65

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 80.4 bits (199), Expect = 4e-18
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N+G I++EL+   AP T  NF  LC++ +Y+G  FHR+I  FMIQ
Sbjct: 7   NLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQ 51

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGG 109
             G I++ELY   AP T  NF  L R  +Y+G  FHR+I  FMIQ     G
Sbjct: 5   TKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTG 55

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 5/58 (8%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
           N G++ +EL+   AP  C NF +LC++ YY+G  FHR IR+FMIQ       G GG S
Sbjct: 7   NKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGES 64

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 61  GEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
           G+I +EL+ K AP  CRNF +LC   YY+   FHR++  F+IQ       G GG S
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGES 70

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
            G+I + L+ + AP T  NF    R  YYN   FHR+I+ FMIQ       G GG S
Sbjct: 6   KGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGES 62

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 62.5 bits (152), Expect = 9e-12
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           S+  H N+G+I +EL+    P  C NF  LC   YYNG  FHR I+ FM+Q
Sbjct: 2   SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQ 52

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 362 GSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIY 421
             S  G   ADE +   +HT  G+L+M + GP T+GS F ITL P+  LD K  +FG+  
Sbjct: 129 NVSSTGTPIADEGYRH-RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV 187

Query: 422 SGMSVVKRIGLVETDKNDRPVDDVKI 447
             +S+++++  +  D   RP+  V +
Sbjct: 188 DDLSLLEKLESLPLDDVGRPLLPVTV 213

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           ++G+I+VELY   AP T  NF    R+ +Y+   FHR+I  F+IQ  G
Sbjct: 5   SLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGG 52

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 55  LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNV 113
           + FH N G+I+++ +   AP T +NF + CR  +YN   FHR+I  FMIQ  G       
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61

Query: 114 NQLQDVIQN 122
              ++ I+N
Sbjct: 62  KATKEPIKN 70

Length = 164

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           +G+++++L+    P  C NF +LC+  YYN   F+ + +DF+ Q
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQ 49

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 61  GEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQA------MG 106
           G I++EL+    P T  NF  LC            Y G  FHR+I DFMIQ        G
Sbjct: 15  GRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNG 74

Query: 107 VGGAS 111
            GG S
Sbjct: 75  TGGKS 79

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 61  GEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQA 104
           G I +EL+   AP T  NF + C   +        Y G +FHR+I+DFMIQ 
Sbjct: 33  GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQG 84

Length = 186

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 61  GEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVI 120
           G I +EL  + AP + +NF +     +YN   FHR+I  FMIQ  G        +    I
Sbjct: 38  GNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPI 97

Query: 121 QN 122
           +N
Sbjct: 98  KN 99

Length = 190

>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 109 GASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168
                 +LQ+++Q L  W  E+ + +N  K KVM    NK   L +  +N   +E V   
Sbjct: 155 SEGKSRKLQELLQRLQEWSKESGLKINPSKSKVMLI-GNKKKRLKDITLNGTPIEAVETF 213

Query: 169 KDLGVTF 175
           K LGVT 
Sbjct: 214 KYLGVTI 220

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. Length = 220

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 383 AGILSMANSG-PDTNGSQFFITLAPTQWLD-----GKHAIFGRIYSGMSVVKRIGLVETD 436
            G ++MA +  PD+  SQFFI L     LD       + +FG +  GM VV +I  VET 
Sbjct: 78  RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETY 137

Query: 437 KN----DRPVDDVKI 447
                 D PV DV I
Sbjct: 138 SFGSYQDVPVQDVII 152

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 22/89 (24%)

Query: 45  FTVVEIILRSLVFHNM-------GEIIVELYWKHAPNTCRNFAELC---------RRNYY 88
            +  E+  R  VF ++       G I+ EL+    P T  NF  LC         +  +Y
Sbjct: 7   QSFPEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHY 66

Query: 89  NGIKFHRIIRDFMIQA------MGVGGAS 111
            G  FHRII  FM Q        G GG S
Sbjct: 67  KGSIFHRIIPQFMCQGGDITNHNGTGGES 95

Length = 183

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 72  APNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           AP T  NF +L  R +Y+G++FHR+   F++Q
Sbjct: 18  APVTAGNFVDLVERGFYDGMEFHRVEGGFVVQ 49

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 384 GILSMA-NSGPDTNGSQFFITLAPTQWLD-GK----HAIFGRIYSGMSVVKRIGLVETDK 437
           G ++MA  +  D+  SQFFI +A   +LD G+    +A+FG++  GM V  +I  V T  
Sbjct: 110 GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD 169

Query: 438 ----NDRPVDDVKILKTHV 452
                + P   V IL   V
Sbjct: 170 VGPYQNVPSKPVVILSAKV 188

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 365 IYGKTFA-----DEIHEELKHTGAGILSMANSGPDTNG--SQFFITL-------APTQWL 410
           +YGKT       DE      +   G ++MA +  D N   SQFF  L       +    L
Sbjct: 84  VYGKTLEEAGRYDEQPVLPFNA-FGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVL 142

Query: 411 DGKHAIFGRIYSGMSVVKRI 430
           DG++A+FG +  G+ +++ +
Sbjct: 143 DGRYAVFGYVTDGLDILREL 162

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 369 TFADEIHEELKHTGAGILSMANSG-PDTNGSQFFITLAPTQWLDGK--------HAIFGR 419
              +E +  LK+T  G L+MA +  P +  +QFFI +    +L+          + +F  
Sbjct: 67  PIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAE 125

Query: 420 IYSGMSVVKRIGLVETDKN----DRPVDDVKILKTHV 452
           +  GM VV +I  V T ++    D P +DV I    V
Sbjct: 126 VVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG0546|consensus	372		100.0
KOG0881|consensus	164		100.0
KOG0880|consensus	217		100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
KOG0883|consensus	518		100.0
KOG0879|consensus	177		100.0
KOG0884|consensus	161		100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
KOG0882|consensus	558		100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00060	183	cyclophilin; Provisional	99.98
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	99.98
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	99.97
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.97
KOG0111|consensus	298		99.97
KOG0885|consensus	439		99.97
KOG0415|consensus	479		99.97
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.97
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.95
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.95
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.94
KOG0865|consensus	167		99.9
KOG0865|consensus	167		98.44
cd01650	220	RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea	97.94
cd00304	98	RT_like RT_like: Reverse transcriptase (RT, RNA-de	96.18
PF00078	214	RVT_1: Reverse transcriptase (RNA-dependent DNA po	96.11
cd01648	119	TERT TERT: Telomerase reverse transcriptase (TERT)	95.95
PF09004	42	DUF1891: Domain of unknown function (DUF1891); Int	95.95
cd03487	214	RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr	95.55
cd01651	226	RT_G2_intron RT_G2_intron: Reverse transcriptases	95.54
cd01646	158	RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip	95.42
cd03714	119	RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc	93.55
KOG0882|consensus	558		92.61
cd01709	346	RT_like_1 RT_like_1: A subfamily of reverse transc	91.97
cd01645	213	RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r	87.78

>KOG0546|consensus

Probab=100.00  E-value=6.2e-42  Score=329.16  Aligned_cols=118  Identities=49%  Similarity=0.739  Sum_probs=113.4

Q ss_pred             cCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCC
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL  410 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~l  410 (456)
                      |+.+.|||+++  |||+  ||||++ ++|+||+||||.+|+||+ +.++|+++++|||||.||||||||||||..++|||
T Consensus        61 YKG~~FHRViK--~FMi--QgGDfs~gnGtGGeSIYG~~FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHL  135 (372)
T KOG0546|consen   61 YKGSRFHRVIK--NFMI--QGGDFSEGNGTGGESIYGEKFDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHL  135 (372)
T ss_pred             ecCchhheeee--ccee--eccccccCCCCCccccccccccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCc
Confidence            55778999988  9999  999998 999999999999999997 89999999999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       411 d~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      ||+|+|||+|+.|++||+.|+++.++.+.+|..+|+|.+|+++.
T Consensus       136 dGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~  179 (372)
T KOG0546|consen  136 DGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV  179 (372)
T ss_pred             CCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence            99999999999999999999999999999999999999999875

>KOG0881|consensus

Probab=100.00  E-value=1.6e-41  Score=277.79  Aligned_cols=103  Identities=76%  Similarity=1.290  Sum_probs=100.5

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      |||||+|+|.||.+|||..|+||.+..|+|.++|+|||||.+||+|||||||||.+.+||||++++||||+.||+|+.++
T Consensus        61 QGGDPTGTGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~  140 (164)
T KOG0881|consen   61 QGGDPTGTGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRM  140 (164)
T ss_pred             ecCCCCCCCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCcccEEEEEEEe
Q psy1031         431 GLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       431 ~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ..++++..++|+.+++|.++.+.
T Consensus       141 G~v~Td~~DRPi~~~kIika~~~  163 (164)
T KOG0881|consen  141 GMVETDNSDRPIDEVKIIKAYPS  163 (164)
T ss_pred             cceecCCCCCCccceeeEeeecC
Confidence            99999999999999999998764

>KOG0880|consensus

Probab=100.00  E-value=6.5e-39  Score=283.03  Aligned_cols=107  Identities=55%  Similarity=0.911  Sum_probs=100.4

Q ss_pred             ceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcC
Q psy1031         345 NHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSG  423 (456)
Q Consensus       345 N~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G  423 (456)
                      |+++  ||||.+ ++|+||-+|||.+|+||+ +.|+|+++|.|||||.|||+||||||||+.+.+||||+++|||||++|
T Consensus        96 nfmI--QGGd~t~g~gtGg~SIyG~~F~DEN-f~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~G  172 (217)
T KOG0880|consen   96 NFMI--QGGDFTKGDGTGGKSIYGEKFPDEN-FKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEG  172 (217)
T ss_pred             Ccee--ecCccccCCCCCCeEeecCCCCCcc-ceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhh
Confidence            5555  777777 779999999999999997 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         424 MSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       424 ~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      ||+|.+|+.+++|++++|+++++|.+|+-++
T Consensus       173 mdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~  203 (217)
T KOG0880|consen  173 MDVVRKIENVKTDERDKPLEDVVIANCGELP  203 (217)
T ss_pred             HHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence            9999999999999999999999999998654

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-36  Score=264.78  Aligned_cols=91  Identities=47%  Similarity=0.793  Sum_probs=77.0

Q ss_pred             CCCCcccccccccccccccccccC--cceEEeeccC-CCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCC
Q psy1031         359 GRGGSSIYGKTFADEIHEELKHTG--AGILSMANSG-PDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVET  435 (456)
Q Consensus       359 g~g~~~~~g~~~~~e~~~~~~h~~--~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~  435 (456)
                      |.||+   ++.|++|++ ...|.+  +|+|||||++ ||+|||||||++.+.+|||++|+|||+|++|||+|++|+++++
T Consensus        60 g~gg~---~~~f~~E~~-~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~  135 (158)
T COG0652          60 GTGGP---GPPFKDENF-ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDT  135 (158)
T ss_pred             CCCCC---CCCCccccc-ccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCc
Confidence            44555   367788863 344444  9999999999 9999999999999999999999999999999999999999888


Q ss_pred             CCC----CCCCcccEEEEEEEe
Q psy1031         436 DKN----DRPVDDVKILKTHVR  453 (456)
Q Consensus       436 ~~~----~~P~~~i~I~~~~v~  453 (456)
                      ...    ..|..+++|.++.+.
T Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~  157 (158)
T COG0652         136 DDSGYVQDVPADPVKILSVKIV  157 (158)
T ss_pred             cCCCcccCCCCCCeEEeeeeee
Confidence            754    467789999998875

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=6.8e-36  Score=267.89  Aligned_cols=104  Identities=54%  Similarity=0.924  Sum_probs=90.5

Q ss_pred             CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031         352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG  431 (456)
Q Consensus       352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~  431 (456)
                      |||++++|.|+.++||..+++|....++|..+|+||||++++++++|||||+++++++||++|+|||||++|||+|++|+
T Consensus        52 ~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~  131 (159)
T cd01923          52 GGDPTGTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAME  131 (159)
T ss_pred             ecccCCCCCCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHH
Confidence            34444444455556666677776667789889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccEEEEEEEeec
Q psy1031         432 LVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       432 ~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +++++++++|+.+|+|.+|+|+.|
T Consensus       132 ~~~~~~~~~P~~~i~I~~~~i~~d  155 (159)
T cd01923         132 NVPDPGTDRPKEEIKIEDTSVFVD  155 (159)
T ss_pred             cCCCCCCCCCCCCeEEEEeEEEeC
Confidence            999988899999999999999875

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=7.8e-36  Score=265.66  Aligned_cols=101  Identities=49%  Similarity=0.902  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031         352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG  431 (456)
Q Consensus       352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~  431 (456)
                      |||+.++|.|+.++||..+++|....+.|..+|+||||+++|++++|||||+++++++||++|+|||||++|||+|++|+
T Consensus        53 ~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~  132 (153)
T cd01928          53 TGDPTGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLE  132 (153)
T ss_pred             ccccCCCCCCCCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHH
Confidence            33433344444455555677776556778889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccEEEEEEE
Q psy1031         432 LVETDKNDRPVDDVKILKTHV  452 (456)
Q Consensus       432 ~~~~~~~~~P~~~i~I~~~~v  452 (456)
                      +++++++++|..+|+|.+|.+
T Consensus       133 ~~~~~~~~~P~~~i~I~~~~~  153 (153)
T cd01928         133 KLPVDKKYRPLEEIRIKDVTI  153 (153)
T ss_pred             cCCCCCCCCCcCCeEEEEeEC
Confidence            999998999999999999864

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>KOG0883|consensus

Probab=100.00  E-value=2.3e-36  Score=289.91  Aligned_cols=108  Identities=55%  Similarity=0.917  Sum_probs=104.1

Q ss_pred             ceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCH
Q psy1031         345 NHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM  424 (456)
Q Consensus       345 N~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~  424 (456)
                      ||++  |||||+|+|.||+||||.+|.||+.+.+.|+++|+|||||+|||+|||||||+..++.+||++||+||+||-|+
T Consensus       325 nFmi--QGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGl  402 (518)
T KOG0883|consen  325 NFMI--QGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGL  402 (518)
T ss_pred             HHee--eCCCCCCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccH
Confidence            4455  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         425 SVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       425 ~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |+|++|+++++++.++|+++|+|.++.|.=
T Consensus       403 dtL~amEnve~d~~DrP~e~I~i~~~~VFV  432 (518)
T KOG0883|consen  403 DTLTAMENVETDEKDRPKEEIKIEDAIVFV  432 (518)
T ss_pred             HHHHHHhcCCCCCCCCcccceEEeeeEEee
Confidence            999999999999999999999999999853

>KOG0879|consensus

Probab=100.00  E-value=3.4e-36  Score=249.35  Aligned_cols=114  Identities=48%  Similarity=0.767  Sum_probs=102.9

Q ss_pred             CccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCC
Q psy1031         334 FSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG  412 (456)
Q Consensus       334 ~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~  412 (456)
                      ++.|||+++  ++++  ||||.- ++|+|-.+|||.+|+||+ +.++|.++|+|||||+++++||.|||||..++.+||+
T Consensus        62 ~~tFHRvIk--dFMi--QgGDFv~gDGtG~~sIy~~~F~DEN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~  136 (177)
T KOG0879|consen   62 NSTFHRVIK--DFMI--QGGDFVNGDGTGVASIYGSTFPDEN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDG  136 (177)
T ss_pred             ccchHHHhh--hhee--ccCceecCCCceEEEEcCCCCCCcc-eeeecCCCceeeccccCCCCCCceEEEEecccccccC
Confidence            344555544  5666  777764 788888999999999997 8999999999999999999999999999999999999


Q ss_pred             CccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEE
Q psy1031         413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV  452 (456)
Q Consensus       413 ~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v  452 (456)
                      +++|||+|++|+.++++|+.+++..+++|+-+|.|..|+-
T Consensus       137 KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGe  176 (177)
T KOG0879|consen  137 KHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGE  176 (177)
T ss_pred             ceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeeccc
Confidence            9999999999999999999999999999999999999974

>KOG0884|consensus

Probab=100.00  E-value=7.4e-36  Score=243.09  Aligned_cols=103  Identities=46%  Similarity=0.792  Sum_probs=97.8

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      |+||++.+|.||.+|||.+|+||+..-++|+.+|+++|||.|||+|+|||||+.+.+|+||-+|+|||+|++|+|.|+.|
T Consensus        52 ~~~~~~~tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldel  131 (161)
T KOG0884|consen   52 QTGDPTHTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL  131 (161)
T ss_pred             EeCCCCCCCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHH
Confidence            67777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCC-CCCCcccEEEEEEEe
Q psy1031         431 GLVETDKN-DRPVDDVKILKTHVR  453 (456)
Q Consensus       431 ~~~~~~~~-~~P~~~i~I~~~~v~  453 (456)
                      +..++++. .+|+.++.|.++.+-
T Consensus       132 e~l~v~~ktyrpl~~~~ik~itih  155 (161)
T KOG0884|consen  132 EKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_pred             hhcccCccccccchheeeeeeEEe
Confidence            99999886 799999999999874

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.8e-35  Score=262.00  Aligned_cols=92  Identities=60%  Similarity=0.992  Sum_probs=80.8

Q ss_pred             CCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCC
Q psy1031         359 GRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN  438 (456)
Q Consensus       359 g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~  438 (456)
                      |.|+.++|+..+++|..+.+.|..+|+||||+++|++++|||||+++++|+||++|+|||||++|||+|++|++++++++
T Consensus        57 g~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~  136 (148)
T cd01927          57 GTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKN  136 (148)
T ss_pred             CCCCCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCC
Confidence            33444455556667765578898889999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCcccEEEEE
Q psy1031         439 DRPVDDVKILKT  450 (456)
Q Consensus       439 ~~P~~~i~I~~~  450 (456)
                      ++|.++|+|.++
T Consensus       137 ~~P~~~i~I~~~  148 (148)
T cd01927         137 DRPYEDIKIINI  148 (148)
T ss_pred             CCCcCCeEEEeC
Confidence            999999999864

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0882|consensus

Probab=100.00  E-value=2.1e-35  Score=288.73  Aligned_cols=102  Identities=60%  Similarity=1.023  Sum_probs=99.8

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      |+|||.|+|+||+||||..|+||+++.|+|+++-+|||||+|||+||||||||..+.|||||++||||||+.|||||.+|
T Consensus       456 qtgdp~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri  535 (558)
T KOG0882|consen  456 QTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRI  535 (558)
T ss_pred             ecCCCCCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCcccEEEEEEE
Q psy1031         431 GLVETDKNDRPVDDVKILKTHV  452 (456)
Q Consensus       431 ~~~~~~~~~~P~~~i~I~~~~v  452 (456)
                      +++.++..++|.++|.|.++.|
T Consensus       536 ~~v~t~k~drp~e~v~iinisv  557 (558)
T KOG0882|consen  536 EQVKTDKYDRPYEDVKIINISV  557 (558)
T ss_pred             hhcccCcCCCCCCceeEEEEec
Confidence            9999999999999999999876

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=1.5e-34  Score=261.11  Aligned_cols=86  Identities=42%  Similarity=0.765  Sum_probs=79.0

Q ss_pred             ccccccccccccCcceEEeeccCCCCCcceEEEEeCC-CCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031         370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAP-TQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL  448 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~-~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~  448 (456)
                      +++|..+.++|..+|+||||++++++++|||||++++ .++||++|+|||||++|||+|++|++++++++++|.++|+|.
T Consensus        75 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~  154 (166)
T cd01921          75 FEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK  154 (166)
T ss_pred             cCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEE
Confidence            4455555778888999999999999999999999986 799999999999999999999999999999899999999999


Q ss_pred             EEEEeec
Q psy1031         449 KTHVRNT  455 (456)
Q Consensus       449 ~~~v~~~  455 (456)
                      +|+|+++
T Consensus       155 ~~~i~~~  161 (166)
T cd01921         155 HTHILDD  161 (166)
T ss_pred             EEEEECC
Confidence            9999875

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=1.8e-34  Score=254.90  Aligned_cols=87  Identities=74%  Similarity=1.212  Sum_probs=76.8

Q ss_pred             CcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCC
Q psy1031         362 GSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRP  441 (456)
Q Consensus       362 ~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P  441 (456)
                      +.++||..+++|..+.++|.++|+||||+++|++++|||||+++++|+||++|+|||||++|||+|++|++++++ +++|
T Consensus        60 ~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P  138 (146)
T cd01922          60 GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRP  138 (146)
T ss_pred             cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCc
Confidence            334444556667656788888999999999999999999999999999999999999999999999999999998 8899


Q ss_pred             CcccEEEE
Q psy1031         442 VDDVKILK  449 (456)
Q Consensus       442 ~~~i~I~~  449 (456)
                      .++|+|.+
T Consensus       139 ~~~I~I~~  146 (146)
T cd01922         139 IDEVKILK  146 (146)
T ss_pred             CCCeEEeC
Confidence            99999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=2.3e-33  Score=254.32  Aligned_cols=105  Identities=47%  Similarity=0.807  Sum_probs=89.9

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEE-cCHHHHHH
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIY-SGMSVVKR  429 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~-~G~~~l~~  429 (456)
                      ||||+.++|+|+.++||..+++|.+..+.|.++|+||||++++++++|||||++++.++||++|+|||+|+ +|+++|++
T Consensus        57 QgGd~~~~g~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~  136 (171)
T cd01925          57 QGGDPTGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLK  136 (171)
T ss_pred             EccccCCCCccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHH
Confidence            34444444555556666677778766778888999999999999999999999999999999999999999 46888999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      |++++++++++|..+|+|.+|+|+++
T Consensus       137 i~~~~~~~~~~P~~~i~I~~~~i~~~  162 (171)
T cd01925         137 LAEVETDKDERPVYPPKITSVEVLEN  162 (171)
T ss_pred             HhcCCcCCCCCcCCCeEEEEEEEEcC
Confidence            99999998999999999999999875

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=8.3e-33  Score=260.94  Aligned_cols=117  Identities=29%  Similarity=0.440  Sum_probs=102.3

Q ss_pred             cCCccceeeeeccceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCC
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD  411 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld  411 (456)
                      |+++.|||+.+- ++++  |+||+.+.   +.++||..|+||. +.++|+++|+||||+.+||+||||||||++++++||
T Consensus       105 Y~gt~FhRVi~~-~f~i--qgGD~~~~---g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LD  177 (249)
T PTZ00221        105 YLYTPVHHVDRN-NNII--VLGELDSF---NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLD  177 (249)
T ss_pred             cCCCEEEEEeCC-CCEE--EeCCCCCC---CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccC
Confidence            456667777652 3565  88987643   3467788999996 578899999999999999999999999999999999


Q ss_pred             CCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       412 ~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      ++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++++
T Consensus       178 gk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~  221 (249)
T PTZ00221        178 FKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTG  221 (249)
T ss_pred             CCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecC
Confidence            99999999999999999999999988899999999999999874

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=9.9e-33  Score=252.87  Aligned_cols=114  Identities=48%  Similarity=0.756  Sum_probs=94.7

Q ss_pred             ccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCC
Q psy1031         335 SPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGK  413 (456)
Q Consensus       335 s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~  413 (456)
                      +.|||+.+  ++++  ||||+. ++|+|+.++||..+++|. ..+.|..+|+||||++++++++|||||+++++|+||++
T Consensus        71 ~~fhrVi~--~f~i--qgGd~~~~~g~g~~~~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~  145 (186)
T PLN03149         71 CQFHRVIK--DFMI--QGGDFLKGDGTGCVSIYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNK  145 (186)
T ss_pred             cEEEEEcC--CcEE--EcCCcccCCCCCcccccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCC
Confidence            33444433  4444  566643 556666667777777775 45778889999999999999999999999999999999


Q ss_pred             ccEEEEEE-cCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         414 HAIFGRIY-SGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       414 ~~vfG~V~-~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      |+|||+|+ +|||+|++|++++++++++|..+|+|.+|+++
T Consensus       146 ~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        146 HVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM  186 (186)
T ss_pred             ceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence            99999999 79999999999999989999999999999974

>PTZ00060 cyclophilin; Provisional

Probab=99.98  E-value=9.5e-32  Score=246.09  Aligned_cols=102  Identities=49%  Similarity=0.833  Sum_probs=86.3

Q ss_pred             cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031         351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR  429 (456)
Q Consensus       351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~  429 (456)
                      ||||+. ++|+++.++||..+++|. ..+.|..+|+||||++++++++|||||+++++++||++|+|||||++|||+|++
T Consensus        81 qgGd~~~~~g~~g~~~~g~~~~~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~  159 (183)
T PTZ00060         81 QGGDITNHNGTGGESIYGRKFTDEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRA  159 (183)
T ss_pred             EeCCccCCCCCCCCcccccccCCcc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHH
Confidence            444443 344555555666667774 567888899999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |+++++. +++|.++|+|.+|+++.
T Consensus       160 I~~~~~~-~~~P~~~v~I~~cg~~~  183 (183)
T PTZ00060        160 MEKEGTQ-SGYPKKPVVVTDCGELQ  183 (183)
T ss_pred             HHccCCC-CCCCcCCeEEEEeEEcC
Confidence            9998884 68999999999999863

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=99.98  E-value=8.1e-32  Score=242.96  Aligned_cols=90  Identities=57%  Similarity=0.946  Sum_probs=79.2

Q ss_pred             CCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCC
Q psy1031         360 RGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKND  439 (456)
Q Consensus       360 ~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~  439 (456)
                      +++.++||..+++|. ..+.|..+|+||||+.+|++++|||||++++.++||++|+|||||++|||+|++|++++++ ++
T Consensus        75 ~~~~~~~g~~~~~e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~  152 (164)
T cd01926          75 TGGKSIYGEKFPDEN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NG  152 (164)
T ss_pred             CCCCcccCCccCCCC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CC
Confidence            333444555566664 5678888999999999999999999999999999999999999999999999999999998 89


Q ss_pred             CCCcccEEEEEE
Q psy1031         440 RPVDDVKILKTH  451 (456)
Q Consensus       440 ~P~~~i~I~~~~  451 (456)
                      +|+.+|+|.+|+
T Consensus       153 ~P~~~i~I~~cG  164 (164)
T cd01926         153 KPKKKVVIADCG  164 (164)
T ss_pred             CCcCCeEEEECC
Confidence            999999999985

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=99.97  E-value=2.7e-31  Score=243.96  Aligned_cols=73  Identities=36%  Similarity=0.582  Sum_probs=67.3

Q ss_pred             cCcceEEeeccC-CCCCcceEEEEeCCCCCCCC-----CccEEEEEEcCHHHHHHhhcCCCCC----CCCCCcccEEEEE
Q psy1031         381 TGAGILSMANSG-PDTNGSQFFITLAPTQWLDG-----KHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILKT  450 (456)
Q Consensus       381 ~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~----~~~P~~~i~I~~~  450 (456)
                      ..+|+||||+.+ ||+|+|||||+++++++||+     +|+|||+|++|||+|++|+++++++    +++|..+|+|.+|
T Consensus       107 ~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~  186 (190)
T PRK10903        107 NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA  186 (190)
T ss_pred             CCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEE
Confidence            349999999975 99999999999999999984     8999999999999999999999976    4799999999999


Q ss_pred             EEe
Q psy1031         451 HVR  453 (456)
Q Consensus       451 ~v~  453 (456)
                      +|+
T Consensus       187 ~v~  189 (190)
T PRK10903        187 KVL  189 (190)
T ss_pred             EEe
Confidence            986

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.97  E-value=8.8e-31  Score=235.39  Aligned_cols=78  Identities=35%  Similarity=0.586  Sum_probs=68.3

Q ss_pred             ccccccCcceEEeeccC-CCCCcceEEEEeCCCCCCC-------C-CccEEEEEEcCHHHHHHhhcCCCCC----CCCCC
Q psy1031         376 EELKHTGAGILSMANSG-PDTNGSQFFITLAPTQWLD-------G-KHAIFGRIYSGMSVVKRIGLVETDK----NDRPV  442 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld-------~-~~~vfG~V~~G~~~l~~i~~~~~~~----~~~P~  442 (456)
                      ..++| .+|+||||+.+ |++++|||||+++++++||       + +|+|||+|++|||+|++|+++.+++    +++|.
T Consensus        74 ~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~  152 (164)
T PRK10791         74 NGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_pred             ccccC-CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence            34456 59999999985 9999999999999988776       3 7999999999999999999999976    36999


Q ss_pred             cccEEEEEEEee
Q psy1031         443 DDVKILKTHVRN  454 (456)
Q Consensus       443 ~~i~I~~~~v~~  454 (456)
                      .+|+|.+|.|.+
T Consensus       153 ~~v~I~~~~i~~  164 (164)
T PRK10791        153 EDVIIESVTVSE  164 (164)
T ss_pred             CCeEEEEEEEeC
Confidence            999999998753

>KOG0111|consensus

Probab=99.97  E-value=1.7e-31  Score=239.04  Aligned_cols=101  Identities=52%  Similarity=0.853  Sum_probs=96.3

Q ss_pred             cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031         351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR  429 (456)
Q Consensus       351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~  429 (456)
                      ||||.+ ++|+||-+|||..|+||+ +.|+|..+|+|||||+|+|+||||||||.....||||+++|||.|++||+||++
T Consensus       196 qggdftn~ngtggksiygkkfdden-f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq  274 (298)
T KOG0111|consen  196 QGGDFTNGNGTGGKSIYGKKFDDEN-FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQ  274 (298)
T ss_pred             cCCccccCCCCCCcccccccccccc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHH
Confidence            788888 899999999999999997 899999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      +++.++. .++|...|+|.+|+-+
T Consensus       275 ~e~qgsk-sgkp~qkv~i~~cge~  297 (298)
T KOG0111|consen  275 VEQQGSK-SGKPQQKVKIVECGEI  297 (298)
T ss_pred             HHhccCC-CCCcceEEEEEecccc
Confidence            9998885 7999999999999865

>KOG0885|consensus

Probab=99.97  E-value=9.4e-31  Score=250.68  Aligned_cols=104  Identities=52%  Similarity=0.831  Sum_probs=100.7

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEc-CHHHHHH
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS-GMSVVKR  429 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~-G~~~l~~  429 (456)
                      |||||+++|+||++|||.+|++|+|+++.+.++|+|+|||.+.+.||||||+||+++|+|++++++||+|+- -+..+-+
T Consensus        64 Qggdp~~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lr  143 (439)
T KOG0885|consen   64 QGGDPTGTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLR  143 (439)
T ss_pred             ccCCCCCCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999994 8889999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |..++++.+.||..+-+|.+|+|+.
T Consensus       144 i~e~eida~~Rp~~p~kI~s~EV~~  168 (439)
T KOG0885|consen  144 ISEVEIDADDRPVDPPKIKSVEVLI  168 (439)
T ss_pred             hcccccccccCCCCccceeeeEeec
Confidence            9999999999999999999999974

>KOG0415|consensus

Probab=99.97  E-value=2.8e-30  Score=245.43  Aligned_cols=105  Identities=44%  Similarity=0.791  Sum_probs=98.2

Q ss_pred             cCCCCCCCCCCCcccccc-------cccccccccccccCcceEEeeccCCCCCcceEEEEeCCC-CCCCCCccEEEEEEc
Q psy1031         351 AGGDPTGTGRGGSSIYGK-------TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPT-QWLDGKHAIFGRIYS  422 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~-------~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~-~~ld~~~~vfG~V~~  422 (456)
                      |+|||+|+|.||.+|||.       .|++|+.+.++|.+.|+|||++.|.|-+||||||||+++ ..|||+|+|||+|+|
T Consensus        52 QTGDPtGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~E  131 (479)
T KOG0415|consen   52 QTGDPTGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAE  131 (479)
T ss_pred             ecCCCCCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhh
Confidence            788888888888888864       468899999999999999999999999999999999985 789999999999999


Q ss_pred             CHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         423 GMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       423 G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      |||+|.+|+.+-++++++|.++|+|.+..|++|
T Consensus       132 G~dtl~kiNea~vD~~~rPykdIRI~HTiiLdD  164 (479)
T KOG0415|consen  132 GFDTLTKINEAIVDPKNRPYKDIRIKHTIILDD  164 (479)
T ss_pred             hHHHHHHHHHHhcCCCCCcccceeeeeeEEecC
Confidence            999999999999999999999999999999986

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.97  E-value=8.8e-30  Score=227.38  Aligned_cols=70  Identities=41%  Similarity=0.579  Sum_probs=63.6

Q ss_pred             cCcceEEeeccC-CCCCcceEEEEeCCCCCCCC-----CccEEEEEEcCHHHHHHhhcCCCCCC----CCCCcccEEEEE
Q psy1031         381 TGAGILSMANSG-PDTNGSQFFITLAPTQWLDG-----KHAIFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKT  450 (456)
Q Consensus       381 ~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~~----~~P~~~i~I~~~  450 (456)
                      ..+|+||||+.+ |++++|||||+++++++||+     +|+|||+|++|||+|++|++++++.+    ++|..+|+|.++
T Consensus        76 ~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~  155 (155)
T cd01920          76 NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA  155 (155)
T ss_pred             CCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence            359999999976 99999999999999999995     79999999999999999999999764    689999999864

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.95  E-value=1.3e-27  Score=211.84  Aligned_cols=81  Identities=53%  Similarity=0.823  Sum_probs=72.0

Q ss_pred             cccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031         369 TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL  448 (456)
Q Consensus       369 ~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~  448 (456)
                      .+++|......|..+|+|||++.++++++|||||++++.++||++|+|||+|++|||+|++|++.+++++++|..+|+|.
T Consensus        66 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317          66 KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             ccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            44455544444667999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             E
Q psy1031         449 K  449 (456)
Q Consensus       449 ~  449 (456)
                      +
T Consensus       146 ~  146 (146)
T cd00317         146 D  146 (146)
T ss_pred             C
Confidence            3

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.95  E-value=2.3e-27  Score=215.59  Aligned_cols=67  Identities=30%  Similarity=0.532  Sum_probs=57.7

Q ss_pred             cccccCcceEEeeccC--CCCCcceEEEEeC-------CCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEE
Q psy1031         377 ELKHTGAGILSMANSG--PDTNGSQFFITLA-------PTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI  447 (456)
Q Consensus       377 ~~~h~~~G~l~ma~~~--~~~~~sqFfI~~~-------~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I  447 (456)
                      ...|..+|+||||+++  ||+++|||||+++       +.++||++|+|||+|++|||+|++|+..           -.|
T Consensus       100 ~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g-----------d~i  168 (176)
T cd01924         100 VLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVG-----------DKI  168 (176)
T ss_pred             ccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcCC-----------CEE
Confidence            3445569999999987  7999999999998       7899999999999999999999999754           247


Q ss_pred             EEEEEee
Q psy1031         448 LKTHVRN  454 (456)
Q Consensus       448 ~~~~v~~  454 (456)
                      .+++|+.
T Consensus       169 ~~~~~~~  175 (176)
T cd01924         169 ESARVVE  175 (176)
T ss_pred             EEEEEec
Confidence            7887764

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.94  E-value=2.9e-26  Score=205.33  Aligned_cols=80  Identities=50%  Similarity=0.798  Sum_probs=71.7

Q ss_pred             cccccc-ccccccCcceEEeeccC--CCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccE
Q psy1031         370 FADEIH-EELKHTGAGILSMANSG--PDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVK  446 (456)
Q Consensus       370 ~~~e~~-~~~~h~~~G~l~ma~~~--~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~  446 (456)
                      +++|.. ..+.| .+|+|+|++.+  +++++|||||++++.++||++|+|||+|++||++|++|++.++++  +|.++|+
T Consensus        73 ~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~  149 (155)
T PF00160_consen   73 IPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVT  149 (155)
T ss_dssp             BSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEE
T ss_pred             cccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeE
Confidence            555543 24667 59999999975  899999999999999999999999999999999999999999876  9999999


Q ss_pred             EEEEEE
Q psy1031         447 ILKTHV  452 (456)
Q Consensus       447 I~~~~v  452 (456)
                      |.+|+|
T Consensus       150 I~~cgv  155 (155)
T PF00160_consen  150 ISSCGV  155 (155)
T ss_dssp             EEEEEE
T ss_pred             EEEeEC
Confidence            999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0865|consensus

Probab=99.90  E-value=2e-24  Score=191.71  Aligned_cols=118  Identities=46%  Similarity=0.729  Sum_probs=109.0

Q ss_pred             cCCcccee-eeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCC
Q psy1031         332 GEFSPIQR-MEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQW  409 (456)
Q Consensus       332 ~~~s~~~r-v~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~  409 (456)
                      |+.+.||| +..+.++++  ||||.+ ++|+||.+||+..|+||+ +.++|..+|+|+|||.+||+||||||||.+..+|
T Consensus        48 yk~s~fhr~~~~~~~fm~--qggDft~hngtggkSiy~ekF~Den-FilkhtgpGiLSmaNagpntngsqffictaktew  124 (167)
T KOG0865|consen   48 YKGSCFHRLIPIIPGFMC--QGGDFTCHNGTGGKSIYGEKFDDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEW  124 (167)
T ss_pred             cccchhhhccccccceee--ccCcccccCCccceEecccccCCcC-cEEecCCCCeeehhhcCCCccccEEEEEcccccc
Confidence            78889999 666678888  999998 899999999999999996 8999999999999999999999999999999999


Q ss_pred             CCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         410 LDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       410 ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ||++++|||+|.+||+++++++..+.. +++|..+|.|.+|+.+
T Consensus       125 LdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  125 LDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKITIADCGQL  167 (167)
T ss_pred             ccCceeEcCceEcccchhhhhhccCCc-CCcccccEEEecCCcC
Confidence            999999999999999999999986664 7899999999999853

>KOG0865|consensus

Probab=98.44  E-value=3e-07  Score=82.19  Aligned_cols=85  Identities=33%  Similarity=0.483  Sum_probs=70.8

Q ss_pred             hhheeeeeeeeecccceeeeeeeeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcc---cccceeee---eeccee
Q psy1031          28 VEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHR---IIRDFM  101 (456)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~---y~~~~f~r---vi~df~  101 (456)
                      +++.+|+++.+..++.                 |++.++||.+..|+|++||.+||+..-   |++..|||   .+++||
T Consensus         2 ~~~~vf~d~~~~~~p~-----------------gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm   64 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPL-----------------GRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFM   64 (167)
T ss_pred             CCCeeeeeeeecCccc-----------------cccceecccccCcchHhhhhhcccCCCccccccchhhhcccccccee
Confidence            4577888888886666                 999999999999999999999998533   99999999   345799


Q ss_pred             EEe------eccCCCccccchhhhhhhccccccC
Q psy1031         102 IQA------MGVGGASNVNQLQDVIQNLHCWCNE  129 (456)
Q Consensus       102 iq~------~g~g~~s~~~~Lq~~l~~l~~W~~~  129 (456)
                      +|+      .|++++|+|..-+++-+-+.....-
T Consensus        65 ~qggDft~hngtggkSiy~ekF~DenFilkhtgp   98 (167)
T KOG0865|consen   65 CQGGDFTCHNGTGGKSIYGEKFDDENFILKHTGP   98 (167)
T ss_pred             eccCcccccCCccceEecccccCCcCcEEecCCC
Confidence            997      4899999998888777766666553

>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT)

Probab=97.94  E-value=3.3e-06  Score=79.41  Aligned_cols=81  Identities=30%  Similarity=0.459  Sum_probs=67.6

Q ss_pred             ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031          89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI  168 (456)
Q Consensus        89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~  168 (456)
                      .+....|++||+++.+.+..     ..++..++.+..|+.++|+.+|++||+++.++....... .+.+++..+..++.+
T Consensus       140 ~~~~~~~yaDD~~i~~~~~~-----~~~~~~~~~~~~~~~~~gl~in~~Kt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  213 (220)
T cd01650         140 PGITHLAYADDIVLFSEGKS-----RKLQELLQRLQEWSKESGLKINPSKSKVMLIGNKKKRLK-DITLNGTPIEAVETF  213 (220)
T ss_pred             CccceEEeccceeeeccCCH-----HHHHHHHHHHHHHHHHcCCEEChhheEEEEecCCCcchh-hhhhcCCcccCCCCC
Confidence            46678899999998864332     578899999999999999999999999999987655432 378889999999999


Q ss_pred             eeeEEEe
Q psy1031         169 KDLGVTF  175 (456)
Q Consensus       169 kyLGV~l  175 (456)
                      ||||+.|
T Consensus       214 kyLG~~i  220 (220)
T cd01650         214 KYLGVTI  220 (220)
T ss_pred             eeccccC
Confidence            9999875

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.

>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family

Probab=96.18  E-value=0.0045  Score=50.18  Aligned_cols=61  Identities=21%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeee
Q psy1031          88 YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNN  167 (456)
Q Consensus        88 y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~  167 (456)
                      ..+...-|++||+++.+...       ..+..+..+..|+.++|+.+|++||+.+                    ...+.
T Consensus        38 ~~~~~~~~Y~DD~~i~~~~~-------~~~~~~~~l~~~l~~~gl~ln~~Kt~~~--------------------~~~~~   90 (98)
T cd00304          38 LLDITLIRYVDDLVVIAKSE-------QQAVKKRELEEFLARLGLNLSDEKTQFT--------------------EKEKK   90 (98)
T ss_pred             cCCceEEEeeCcEEEEeCcH-------HHHHHHHHHHHHHHHcCcEEChheeEEe--------------------cCCCC
Confidence            45678889999998885433       5788889999999999999999999975                    23566


Q ss_pred             eeeeEEEe
Q psy1031         168 IKDLGVTF  175 (456)
Q Consensus       168 ~kyLGV~l  175 (456)
                      ++|||..+
T Consensus        91 ~~flG~~~   98 (98)
T cd00304          91 FKFLGILV   98 (98)
T ss_pred             eeeeceeC
Confidence            88888753

An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.

>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons

Probab=96.11  E-value=0.0015  Score=60.56  Aligned_cols=61  Identities=26%  Similarity=0.449  Sum_probs=50.3

Q ss_pred             ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031          89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI  168 (456)
Q Consensus        89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~  168 (456)
                      .+..+.|++||+++.+..      ...+++.++.+.+|++++||.+|++||+.++                    ..+.+
T Consensus       154 ~~~~~~rY~DD~~i~~~~------~~~~~~~~~~i~~~~~~~gl~ln~~Kt~~~~--------------------~~~~~  207 (214)
T PF00078_consen  154 PDISYLRYADDILIISKS------KEELQKILEKISQWLEELGLKLNPEKTKILH--------------------PSDSV  207 (214)
T ss_dssp             TTSEEEEETTEEEEEESS------HHHHHHHHHHHHHHHHHTTSBCSSTTTSCS----------------------ESSE
T ss_pred             ccccceEeccccEEEECC------HHHHHHHHHHHHHHHHHCCCEEChHHEEEEe--------------------CCCCE
Confidence            567899999999988643      2348999999999999999999999999765                    56789


Q ss_pred             eeeEEEe
Q psy1031         169 KDLGVTF  175 (456)
Q Consensus       169 kyLGV~l  175 (456)
                      +|||+.|
T Consensus       208 ~~lG~~i  214 (214)
T PF00078_consen  208 KFLGYVI  214 (214)
T ss_dssp             EETTEEE
T ss_pred             EEEeEEC
Confidence            9999875

The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....

>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT)

Probab=95.95  E-value=0.0062  Score=51.77  Aligned_cols=67  Identities=16%  Similarity=0.255  Sum_probs=50.4

Q ss_pred             cceeeeeecceeEEeeccCCCccccchhhhhhhccccc-cCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031          90 GIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWC-NENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI  168 (456)
Q Consensus        90 ~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~-~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~  168 (456)
                      +..+.|++||+++.+..      ....+..++.+..|. +++||.+|++||++.....              .....+.+
T Consensus        52 ~~~~~rYaDD~li~~~~------~~~~~~~~~~l~~~l~~~~gl~iN~~Kt~~~~~~~--------------~~~~~~~~  111 (119)
T cd01648          52 DSLLLRLVDDFLLITTS------LDKAIKFLNLLLRGFINQYKTFVNFDKTQINFSFA--------------QLDSSDLI  111 (119)
T ss_pred             CceEEEEeCcEEEEeCC------HHHHHHHHHHHHHhhHHhhCeEECcccceeecccc--------------ccCCCCcc
Confidence            45678999999888533      245788889999887 9999999999999875432              11233568


Q ss_pred             eeeEEEec
Q psy1031         169 KDLGVTFQ  176 (456)
Q Consensus       169 kyLGV~ld  176 (456)
                      .|||+.|+
T Consensus       112 ~flG~~i~  119 (119)
T cd01648         112 PWCGLLIN  119 (119)
T ss_pred             CceeEeeC
Confidence            99998875

Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at

>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs

Probab=95.95  E-value=0.0019  Score=43.90  Aligned_cols=42  Identities=24%  Similarity=0.236  Sum_probs=8.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhcccCCCCChhhHHHhhhheeee
Q psy1031         181 FNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRS  222 (456)
Q Consensus       181 f~~Hi~~~~~ka~~~l~~L~r~~~~~~~~~~~~~ly~a~V~p  222 (456)
                      |+.|+..+.+||.+++++|++..+...++..+..+|+++|.+
T Consensus         1 W~~n~~~~~KKa~qRlyFLRkl~k~~~~~~~l~lfY~s~IeS   42 (42)
T PF09004_consen    1 WTSNTTSLYKKAQQRLYFLRKLRKFNVDSKLLTLFYHSVIES   42 (42)
T ss_dssp             -------------------------SS-----SHTTTTT---
T ss_pred             CCcchHHHHHHHHhHHHHHHHHHHccchhHHHHHHHHHHhcC
Confidence            788999999999999999988877788888899999998753

; GO: 0008168 methyltransferase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 2CQ2_A 3THT_C 3THP_A.

>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons

Probab=95.55  E-value=0.013  Score=55.05  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031          89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI  168 (456)
Q Consensus        89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~  168 (456)
                      .+..+.|++||+++.+.....    ..+++.++.+..|+.+.||.+|++||+++...                    +..
T Consensus       133 ~~~~~~RYaDD~~i~~~~~~~----~~~~~~~~~i~~~l~~~gL~ln~~Kt~i~~~~--------------------~~~  188 (214)
T cd03487         133 NGLTYTRYADDITFSSNKKLK----EALDKLLEIIRSILSEEGFKINKSKTRISSKG--------------------SRQ  188 (214)
T ss_pred             cCCeEEEEeccEEEEccccch----hHHHHHHHHHHHHHHHCCceeCCCceEEccCC--------------------CCc
Confidence            356789999999987533211    36788889999999999999999999988652                    235


Q ss_pred             eeeEEEecCC
Q psy1031         169 KDLGVTFQYN  178 (456)
Q Consensus       169 kyLGV~ld~~  178 (456)
                      .+||+.+.++
T Consensus       189 ~~~G~~i~~~  198 (214)
T cd03487         189 IVTGLVVNNG  198 (214)
T ss_pred             EEEEEEEeCC
Confidence            6888888765

The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.

>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin

Probab=95.54  E-value=0.0061  Score=57.19  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031          89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI  168 (456)
Q Consensus        89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~  168 (456)
                      .+....|++||+.+.+.+..      .++..++.+..|+++.||.+|++||++++++                   .+.+
T Consensus       165 ~~~~~~rY~DD~~i~~~~~~------~~~~~~~~i~~~~~~~gl~ln~~Kt~i~~~~-------------------~~~~  219 (226)
T cd01651         165 RRLRYVRYADDFVIGVRGPK------EAEEIKELIREFLEELGLELNPEKTRITHFK-------------------SEGF  219 (226)
T ss_pred             CceEEEEecCceEEecCCHH------HHHHHHHHHHHHHHHcCCeechhhcceeecC-------------------CCCC
Confidence            55678899999988854332      2788889999999999999999999999985                   4567


Q ss_pred             eeeEEEe
Q psy1031         169 KDLGVTF  175 (456)
Q Consensus       169 kyLGV~l  175 (456)
                      .|||..|
T Consensus       220 ~fLG~~~  226 (226)
T cd01651         220 DFLGFTF  226 (226)
T ss_pred             eeCCeEC
Confidence            7888764

RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).

>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons

Probab=95.42  E-value=0.012  Score=52.54  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeee
Q psy1031          88 YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNN  167 (456)
Q Consensus        88 y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~  167 (456)
                      ..+..+.|++||+++.+..      ...+++.++.+..|.++.||.+|++||+.+++....                 .+
T Consensus        80 ~~~~~~~RY~DD~~i~~~~------~~~~~~~~~~i~~~l~~~gL~ln~~Kt~~~~~~~~~-----------------~~  136 (158)
T cd01646          80 LKGVDYVRYVDDIRIFADS------KEEAEEILEELKEFLAELGLSLNLSKTEILPLPEGT-----------------AS  136 (158)
T ss_pred             cCCceEEEecCcEEEEcCC------HHHHHHHHHHHHHHHHHCCCEEChhhceeeecCCCC-----------------cc
Confidence            4678899999999998632      234688899999999999999999999999885321                 56


Q ss_pred             eeeeEEEecCC
Q psy1031         168 IKDLGVTFQYN  178 (456)
Q Consensus       168 ~kyLGV~ld~~  178 (456)
                      +.+||..+...
T Consensus       137 ~~flg~~~~~~  147 (158)
T cd01646         137 KDFLGYRFSPI  147 (158)
T ss_pred             ccccceEeehh
Confidence            77788777654

The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.

>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons

Probab=93.55  E-value=0.12  Score=43.63  Aligned_cols=84  Identities=17%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             eEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcc----cccceeeeeecceeEEeeccCCCccccchhhhhhhccc-c
Q psy1031          52 LRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY----YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHC-W  126 (456)
Q Consensus        52 ~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~----y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~-W  126 (456)
                      ....+.++.|...+..-+.....++..|..+...-+    ..+..+..++||+.+.+..   ++   ..++.+..+.. -
T Consensus        18 ~~~af~~~~~~~~~~~mp~Gl~~sp~~f~~~~~~i~~~~~~~~~~v~~Y~DDili~~~~---~~---~~~~~~~~l~~~~   91 (119)
T cd03714          18 DLLGFAWQGETYQFKALPFGLSLAPRVFTKVVEALLAPLRLLGVRIFSYLDDLLIIASS---IK---TSEAVLRHLRATL   91 (119)
T ss_pred             ceeeEEECCCcEEEEecCCcccchHHHHHHHHHHHHHHhhcCCeEEEEEecCeEEEeCc---HH---HHHHHHHHHHHHH
Confidence            344555666776666666666666655554333211    2345567788999887543   22   22333333332 4


Q ss_pred             ccCCceeeecCCeEE
Q psy1031         127 CNENLMVLNLEKCKV  141 (456)
Q Consensus       127 ~~~~~L~~n~~Kt~~  141 (456)
                      +.++|+.+|++||++
T Consensus        92 l~~~gl~ln~~K~~~  106 (119)
T cd03714          92 LANLGFTLNLEKSKL  106 (119)
T ss_pred             HHHcCCccChhhcEe
Confidence            789999999999986

Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.

>KOG0882|consensus

Probab=92.61  E-value=0.26  Score=50.26  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=87.9

Q ss_pred             ccccccCCccceeeeeccceeecCcCCCCCCCCC-CCc-cccc----ccc-cccccccccccCcceEEeeccCCCCCcce
Q psy1031         327 NKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGR-GGS-SIYG----KTF-ADEIHEELKHTGAGILSMANSGPDTNGSQ  399 (456)
Q Consensus       327 ~kt~~~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~-g~~-~~~g----~~~-~~e~~~~~~h~~~G~l~ma~~~~~~~~sq  399 (456)
                      |...|.+...+.++.+  +.+.  |.||---.+. +|- -.|.    ..+ .++.+..++|. .-++........-.+-+
T Consensus       134 ~q~~~fkklH~sPV~~--i~y~--qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~E  208 (558)
T KOG0882|consen  134 CQDGYFKKLHFSPVKK--IRYN--QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFE  208 (558)
T ss_pred             CccceecccccCceEE--EEee--ccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceE
Confidence            4455666666666666  5665  8887542221 111 1111    112 23455778886 55666666555556778


Q ss_pred             EEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         400 FFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       400 FfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |++.-...+.+..+..|||+|..|-++++.|.++.++....|..++.|.++++.-
T Consensus       209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgR  263 (558)
T KOG0882|consen  209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGR  263 (558)
T ss_pred             EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhh
Confidence            9998888888999999999999999999999999999999999999999998754

>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs)

Probab=91.97  E-value=0.77  Score=45.98  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=42.9

Q ss_pred             ccccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecC
Q psy1031          87 YYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTN  147 (456)
Q Consensus        87 ~y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~  147 (456)
                      .++|..++|+.||+++.+.       ..+-......+.++++.-||++|++||.++.....
T Consensus       109 ~~~g~~l~RYaDD~vi~~~-------~~~a~~aw~~i~~fl~~lGLelN~eKT~iV~~~~~  162 (346)
T cd01709         109 ATDGGLLYRLHDDLWFWGQ-------PETCAKAWKAIQEFAKVMGLELNKEKTGSVYLSDD  162 (346)
T ss_pred             cCCCceEEEEcCeEEEEcC-------HHHHHHHHHHHHHHHHHcCceeccccceEEEeccC
Confidence            4679999999999999832       12345566678888889999999999999987643

An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.

>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs)

Probab=87.78  E-value=1.4  Score=41.21  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             cceEEEEEecCCC---CchhhhhHHHhhhc---ccccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCcee
Q psy1031          60 MGEIIVELYWKHA---PNTCRNFAELCRRN---YYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMV  133 (456)
Q Consensus        60 ~G~i~~~L~~~~~---P~t~~nf~~l~~~~---~y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~  133 (456)
                      .|...+..-+...   |.+...++.-+-..   .+.+..+.+++||+++.+.      ......+.++.+.....++|+.
T Consensus       121 ~~~~~~~~lP~Gl~~SP~~f~~~m~~~l~~~~~~~~~~~~~~Y~DDili~s~------~~~~~~~~l~~v~~~l~~~gl~  194 (213)
T cd01645         121 AKRYQWKVLPQGMKNSPTICQSFVAQALEPFRKQYPDIVIYHYMDDILIASD------LEGQLREIYEELRQTLLRWGLT  194 (213)
T ss_pred             CceEEEEEeCCCCcChHHHHHHHHHHHHHHHHHHCCCeEEEEEcCCEEEEcC------CHHHHHHHHHHHHHHHHHCCCE
Confidence            5666666555554   44433333322111   1234456788999988742      2355678888899999999999


Q ss_pred             eecCCeE
Q psy1031         134 LNLEKCK  140 (456)
Q Consensus       134 ~n~~Kt~  140 (456)
                      +|++||+
T Consensus       195 ln~~K~~  201 (213)
T cd01645         195 IPPEKVQ  201 (213)
T ss_pred             eCHHHEe
Confidence            9999997

RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		3e-34
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		3e-34
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		3e-34
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-24
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		4e-22
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-21
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-21
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-21
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		8e-21
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		9e-21
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		1e-20
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-20
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		1e-20
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-20
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		3e-20
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		5e-19
1dyw_A	173	Biochemical And Structural Characterization Of A Di		8e-19
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		1e-18
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		1e-18
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-18
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		5e-18
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		6e-18
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		6e-18
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		6e-18
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		6e-18
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		6e-18
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		6e-18
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		6e-18
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		6e-18
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		6e-18
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		7e-18
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		8e-18
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		1e-17
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		1e-17
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		1e-17
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-17
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		2e-17
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-17
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		2e-17
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-17
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-17
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-17
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-17
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		3e-17
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-17
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		4e-17
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		5e-17
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		5e-17
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		1e-16
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		2e-16
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		3e-16
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		8e-16
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		8e-16
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		9e-16
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		4e-15
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		4e-15
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		6e-15
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		9e-15
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		1e-14
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		2e-14
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-14
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		3e-14
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-14
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		7e-14
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		3e-12
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		8e-11
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		9e-11
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		8e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		8e-08
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		9e-08
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		6e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-05
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		9e-05
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		9e-05

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
            +V R+G+VET+  DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
            +V R+G+VET+  DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+  G+
Sbjct: 77  IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
            +V R+G+VET+  DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP   LDGKH IF R+   M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
           + ++ I  V+T   ++P+ D+KIL+T
Sbjct: 164 TCIENIASVQTTATNKPIFDLKILRT 189

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+TF DE + +LKH G G +SMAN+GPDTNGSQFFITL    WLDGKH +FG++  GM
Sbjct: 82  IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGM 140
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
           +VV  I L  TD +DRP+ D  I+ +
Sbjct: 141 TVVHSIELQATDGHDRPLTDCTIVNS 166

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ FADE +  +KH   G LSMAN+GP+TNGSQFFIT APT WLDG+H +FG++  GM
Sbjct: 86  IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGM 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
            VV RI   +T+ +DRPV  VKI+ +
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKIVAS 169

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+TF DE + +LKH G G +SMAN+GPDTNGSQFFITL    WLDGKH +FG++  GM
Sbjct: 90  IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGM 148
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
           +VV  I L  TD +DRP+ +  I+ +
Sbjct: 149 TVVHSIELQATDGHDRPLTNCSIINS 174

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ FADE +  +KH   G LSMAN+GP+TNGSQFFIT APT WLDG H +FG++  GM
Sbjct: 86  IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGM 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
            VV RI   +T+ +DRPV  VKI+ +
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKIVAS 169

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ FADE + +LKH GAG LSMAN+G DTNGSQFFIT   T WLDG+H +FG+I  GM
Sbjct: 81  IYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGM 139
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
            VV++I   E    DRP  DV I  +
Sbjct: 140 DVVRKIEQTEKLPGDRPKQDVIIAAS 165

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT   T WLDGKH +FG++  GM
Sbjct: 87  IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VV+++   +TD  D+P+ DV I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT   T WLDGKH +FG++  GM
Sbjct: 87  IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VV+++   +TD  D+P+ DV I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           I+G  F DE H  L+H     LSMAN+G +TNGSQFFIT+ PT WLD KH +FGR+  GM
Sbjct: 87  IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146
Query: 425 SVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
            VV+RI  V+ + K D+P +DV I+   V+
Sbjct: 147 EVVQRISNVKVNPKTDKPYEDVSIINITVK 176

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           I+G  F DE  + L H+   ++SMAN GP+TNGSQFFIT  P  WLD KH +FG++  G 
Sbjct: 71  IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
            +V  I  V TDK D+P++D+KIL   + N
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKILNIKINN 160

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT   T WLDGKH +FG++  GM
Sbjct: 80  IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 138
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VV+++   +TD  D+P+ DV I
Sbjct: 139 EVVRKVESTKTDSRDKPLKDVII 161

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT   T WLDGKH +FG++  GM
Sbjct: 90  IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 148
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VV+++   +TD  D+P+ DV I
Sbjct: 149 EVVRKVESTKTDSRDKPLKDVII 171

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
           +GK F DE    L HTG GILSMANSGP++N SQFFIT     +LD KH IFGR+  G  
Sbjct: 86  WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145
Query: 426 VVKRIGLVETD-KNDRPVDDVKILKTHV 452
           V+  +  VE+D K DRP ++++I  T V
Sbjct: 146 VLTAMENVESDPKTDRPKEEIRIDATTV 173

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE  +E KHTG G+LSMAN+GP+TNGSQFF+    T+WLDGKH +FGR+  G+
Sbjct: 85  IYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VVK +      ++ +PV D  I
Sbjct: 144 DVVKAV-ESNGSQSGKPVKDCMI 165

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE + ++KH   G +SMAN+GP++NGSQFF+T APT WLDG+H +FG++  GM
Sbjct: 80  IYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGM 137
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VVK++   +T  ND+P   VKI
Sbjct: 138 DVVKKVENTKTGLNDKPKKAVKI 160

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  FADE + +LKH   G+LSMAN+GP+TNGSQFFIT   T WLDGKH +FG +  GM
Sbjct: 76  IYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGM 134
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
           +VVK I   E   + +P   ++I K  V
Sbjct: 135 NVVKAI-EAEGSGSGKPRSRIEIAKCGV 161

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE +  LKHTG G+LSMANSGP+TNGSQFF+T   T WLDGKH +FG +  G+
Sbjct: 78  IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            V+++I   +  K+ +P   V I
Sbjct: 137 DVLRQI-EAQGSKDGKPKQKVII 158

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE +  LKHTG G+LSMANSGP+TNGSQFF+T   T WLDGKH +FG +  G+
Sbjct: 86  IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 144
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            V+++I   +  K+ +P   V I
Sbjct: 145 DVLRQI-EAQGSKDGKPKQKVII 166

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 4/70 (5%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 77  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 135
Query: 425 SVV---KRIG 431
           ++V   KR G
Sbjct: 136 NIVEAMKRFG 145

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 365 IYGKTFADEI--HEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS 422
           IYG TF DE    +  +HTG G LSMAN+GP+TNGSQFFI  A T WLDGKH +FGR+  
Sbjct: 89  IYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVID 148
Query: 423 GMSVVKRI 430
           G+ VVK++
Sbjct: 149 GLDVVKKV 156

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 77  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 135
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 136 NIVEAM 141

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 97  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 155
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 156 NIVEAM 161

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 86  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 144
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 145 NIVEAM 150

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ FADE + ++KHT  G+LSMAN+G +TNGSQFFIT  PT WLDGKH +FG +  G+
Sbjct: 77  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 425 SVVKRI 430
            +V+++
Sbjct: 136 DIVRKV 141

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GIL+MAN+GP+TNGSQFFI  A T+WLDGKH +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ FADE + ++KHT  G+LSMAN+G +TNGSQFFIT  PT WLDGKH +FG +  G+
Sbjct: 78  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 425 SVVKRI 430
            +V+++
Sbjct: 137 DIVRKV 142

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +  LKH G G+LSMAN+GP+TNGSQFFI    T WLDGKH +FG +  GM
Sbjct: 78  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 425 SVVKRI 430
            VVK+I
Sbjct: 137 DVVKKI 142

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +  LKH G G+LSMAN+GP+TNGSQFFI    T WLDGKH +FG +  GM
Sbjct: 79  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 137
Query: 425 SVVKRI 430
            VVK+I
Sbjct: 138 DVVKKI 143

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +  LKH G G+LSMAN+GP+TNGSQFFI    T WLDGKH +FG +  GM
Sbjct: 78  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 425 SVVKRI 430
            VVK+I
Sbjct: 137 DVVKKI 142

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDGKH +FG +  GM
Sbjct: 77  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGM 135
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 136 NIVEAM 141

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +  LKH G G+LSMAN+GP+TNGSQFFI    T WLDGKH +FG +  GM
Sbjct: 77  IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135
Query: 425 SVVKRI 430
            VVK+I
Sbjct: 136 DVVKKI 141

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IY   FADE + +L+H+  G+LSMANSGP TNG QFFIT +   WLDGKH +FG+I  G+
Sbjct: 90  IYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 148
Query: 425 SVVKRIGLVETDKNDRP 441
            V+++I  V T  N++P
Sbjct: 149 LVMRKIENVPTGPNNKP 165

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDG H +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + +L+H G G+LSMANSGP+TNGSQFFI      WLDGKH +FGR+  G 
Sbjct: 85  IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 425 SVVKRI 430
           +VVK++
Sbjct: 144 NVVKKM 149

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG++F DE +  +KH   G+LSMAN+GP+TN SQFFITL P  WLDGKH +FG++  GM
Sbjct: 84  IYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGM 142
Query: 425 SVVKRI 430
           +VV+ +
Sbjct: 143 NVVREM 148

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDG H +FG++  GM
Sbjct: 78  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 136
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 137 NIVEAM 142

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYGK F DE +  LKHTG G+LS ANSGP+TNGSQFF+T   T WLDGKH +FG +  G+
Sbjct: 87  IYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            V+++I   +  K+ +P   V I
Sbjct: 146 DVLRQI-EAQGSKDGKPKQKVII 167

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WLDG H +FG++  GM
Sbjct: 82  IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 140
Query: 425 SVVKRI 430
           ++V+ +
Sbjct: 141 NIVEAM 146

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + ELKHT  GILSMAN G  TNGSQFFITL  TQWLD KH +FG +  GM
Sbjct: 102 IYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGM 160
Query: 425 SVVKRI 430
            VV +I
Sbjct: 161 DVVHKI 166

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE    +KH  A +LSMAN G DTNGSQFFIT  PT  LDG H +FG++ SG 
Sbjct: 109 IYGGFFEDESFA-VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 167
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
            VV+ I   +TD   +P  +V+IL
Sbjct: 168 EVVREIENQKTDAASKPFAEVRIL 191

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG++F DE +  +KH   G+LSMAN+GP+TN SQF ITL P  WLDGKH +FG++  GM
Sbjct: 84  IYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGM 142
Query: 425 SVVKRI 430
           +VV+ +
Sbjct: 143 NVVREM 148

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE +  LKHTG GILS AN+GP+TNGSQFFI  A T+WLDGKH +FG++  G 
Sbjct: 77  IYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGX 135
Query: 425 SVVK 428
           ++V+
Sbjct: 136 NIVE 139

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE    +KH    +LSMAN G DTNGSQFFIT  PT  LDG H +FG++ SG 
Sbjct: 92  IYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 150
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
            VV+ I   +TD   +P  +V+IL
Sbjct: 151 EVVREIENQKTDAASKPFAEVRIL 174

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +    H    +LSMAN+GP+TNGSQFFIT  P  WLDGKH +FG++  GM
Sbjct: 101 IYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
            VVK I    + +N +P   V I  + V
Sbjct: 160 EVVKSIEKCGS-QNGKPTKSVCITASGV 186

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE    +KH    +LSMAN G DTNGSQFFIT  PT  LDG H +FG++ SG 
Sbjct: 92  IYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 150
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
            VV+ I   +TD   +P  +V+IL
Sbjct: 151 EVVREIENQKTDAASKPFAEVRIL 174

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS-- 422
           IYG  FADE +   KH   GILSMAN+GP+TNGSQFFIT A T WLDGKH +FG +    
Sbjct: 82  IYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEK 140
Query: 423 GMSVVKRI 430
             SVVK I
Sbjct: 141 SYSVVKEI 148

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE +  LKH  A +LSMAN G  TNGSQFFIT  P   LDG H +FG + SG 
Sbjct: 102 IYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGF 160
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
            V+++I  ++TD   RP  DV+++   V  T
Sbjct: 161 EVIEQIENLKTDAASRPYADVRVIDCGVLAT 191

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE  ++  H   G+LSMAN+GP+TNGSQFFIT  P  WLDGKH +FG +  G 
Sbjct: 76  IYGGKFPDENFKK-HHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGY 134
Query: 425 SVVKRI 430
            +VK++
Sbjct: 135 DIVKKV 140

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 365 IYGKTFADE-IHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSG 423
           IYG+ F DE  H   KH   G+LSMAN+G +TNGSQFFIT  PT  LDGKH +FG++  G
Sbjct: 98  IYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG 155
Query: 424 MSVVKRIGLVETDKNDRPV 442
           M V K +  VE  K ++P 
Sbjct: 156 MGVAKILENVEV-KGEKPA 173

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE    +KH    ++SMAN GP+TNGSQFFIT  P   L+  H +FG++ SG 
Sbjct: 89  IYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQ 147
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
            VV +I  ++T+  +RP+ DV IL
Sbjct: 148 EVVTKIEYLKTNSKNRPLADVVIL 171

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS--VV 427
           FADE H EL+     +L+MAN+GP TNGSQFFIT+  T  L+ +H IFG +    S  VV
Sbjct: 106 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVV 165
Query: 428 KRIGLVETDKNDRPVDDVKI 447
           + I    TD NDRP D V I
Sbjct: 166 EAISKTATDGNDRPTDPVVI 185

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           I+GK F DE  E LKH   G++SMAN+GP+TNGSQFFIT      LD K+ +FG++  G+
Sbjct: 66  IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 125
Query: 425 SVVKRI-GLVETDKNDRPVDDVKI 447
             +  +  L   +K  RP++DV I
Sbjct: 126 ETLDELEKLPVNEKTYRPLNDVHI 149

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           I+GK F DE  E LKH   G++SMAN+GP+TNGSQFFIT      LD K+ +FG++  G+
Sbjct: 72  IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 131
Query: 425 SVVKRI-GLVETDKNDRPVDDVKI 447
             +  +  L   +K  RP++DV I
Sbjct: 132 ETLDELEKLPVNEKTYRPLNDVHI 155

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSG----PDTNGSQFFITLAPTQWLDGKHAIFGRI 420
           IYG+ F DEI+ ELK+   GILSMA+ G    P+TNGSQFFIT +    L+G++ IFG++
Sbjct: 82  IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141
Query: 421 YSGMSVVKRIGLVETDKNDRPVDDVKI 447
             G   +  +    +DK+ +P+D++ I
Sbjct: 142 IDGFETLNTLENCPSDKSHKPIDEIII 168

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE + ++KH   G+LSMANSGP+TNG QFFIT    +WLDGK+ +FGRI    
Sbjct: 139 IYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDND 197
Query: 425 SVV 427
           S++
Sbjct: 198 SLL 200

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE + ++KHTG G+LSMAN G +TN SQF ITL   + LD KH +FG +  GM
Sbjct: 81  IYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGM 139
Query: 425 SVVKRI 430
             VK+I
Sbjct: 140 DTVKKI 145

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG  F DE H  L+    G+++MAN+G   NGSQFF TL     L+ KH IFG++ +G 
Sbjct: 90  IYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV-TGD 148
Query: 425 SVVK--RIGLVETDKNDRPVDDVKILKTHV 452
           +V    R+  V+ D ++RP +  KI    V
Sbjct: 149 TVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
           G  F DE    L H G G+LSMAN G  +N S+FFIT    + L+ KH IFGR+  G+ V
Sbjct: 86  GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDV 145
Query: 427 VKRIGLVET 435
           +++   +ET
Sbjct: 146 LRQWEKLET 154

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 55  LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           + FH N G+I+++ +   AP T +NF + CR  +YN   FHR+I  FMIQ  G
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGG 54

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 55  LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           + FH N G+I+++ +   AP T +NF + CR  +YN   FHR+I  FMIQ  G
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGG 54

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 55  LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVG 108
           +V H ++G++ VEL+ +  P  CRNF +LC   YY    FHR+++DF++Q       G G
Sbjct: 24  VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 109 GA 110
           GA
Sbjct: 84  GA 85

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           N G I ++L+   AP T  NF +  +  +Y+G  FHR+I  FMIQ  G
Sbjct: 7   NHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGG 54

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           N G I +EL    AP T  NF    ++ +Y+G  FHR+I  FMIQ  G
Sbjct: 11  NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGG 58

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 55  LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           L+  + G I +EL  + AP + +NF +     +YN   FHR+I  FMIQ  G
Sbjct: 8   LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGG 59

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 55  LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
           L+  + G I +EL  + AP + +NF +     +YN   FHR+I  FMIQ  G
Sbjct: 8   LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGG 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	6e-65
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	6e-24
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	8e-65
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	8e-24
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	5e-64
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	4e-23
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-62
2b71_A	196	Cyclophilin-like protein; structural genomics, str	5e-23
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-62
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	4e-23
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	2e-60
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	6e-23
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	3e-60
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	3e-23
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-59
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-22
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-59
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	8e-23
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-57
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-22
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-56
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	3e-20
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	8e-53
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	4e-22
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-48
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-10
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	5e-48
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	3e-10
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	6e-48
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	3e-10
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	7e-48
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	2e-09
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	8e-47
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	6e-09
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-44
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-08
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-44
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-09
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	2e-44
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	2e-09
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-44
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-09
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-43
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	7e-09
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-43
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-08
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-43
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	9e-09
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	2e-43
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-08
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-43
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-08
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	4e-43
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	2e-08
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	5e-43
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	2e-08
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-42
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-09
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	8e-42
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	2e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-10
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-29
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	7e-17
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	5e-29
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	6e-17
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	1e-27
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	2e-16
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	2e-20
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	6e-04

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  205 bits (524), Expect = 6e-65
 Identities = 74/102 (72%), Positives = 88/102 (86%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR 453
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKI+K +  
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score = 96.9 bits (242), Expect = 6e-24
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
           ++    +MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ       G 
Sbjct: 13  NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72

Query: 108 GGAS 111
           GGAS
Sbjct: 73  GGAS 76

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  206 bits (526), Expect = 8e-65
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKI+K + 
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYP 164

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score = 97.8 bits (244), Expect = 8e-24
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
           ++    +MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ       G 
Sbjct: 13  NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72

Query: 108 GGAS 111
           GGAS
Sbjct: 73  GGAS 76

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  202 bits (517), Expect = 5e-64
 Identities = 52/103 (50%), Positives = 68/103 (66%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDP+G G GG SI+G  F DE  + L H+   ++SMAN GP+TNGSQFFIT  P  WLD
Sbjct: 58  TGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD 117

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
            KH +FG++  G  +V  I  V TDK D+P++D+KIL   + N
Sbjct: 118 FKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score = 94.2 bits (235), Expect = 4e-23
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
           S + +  MG+I + L++K    T +NF+      YYN   FHR+I+ FM+Q       G 
Sbjct: 7   SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGT 66

Query: 108 GGAS 111
           GG S
Sbjct: 67  GGES 70

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  200 bits (510), Expect = 2e-62
 Identities = 62/101 (61%), Positives = 79/101 (78%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP   LD
Sbjct: 91  GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 150

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IF R+   M+ ++ I  V+T   ++P+ D+KIL+T  
Sbjct: 151 GKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTST 191

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score = 95.1 bits (237), Expect = 5e-23
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGVGGAS 111
           N+G+  VELYW H+P TC NF  LC   +Y+   FHR+I +F+IQ       G GG S
Sbjct: 46  NLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 103

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  198 bits (506), Expect = 3e-62
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDPTGTG GG SI+G  F DE H  L+H     LSMAN+G +TNGSQFFIT+ PT WLD
Sbjct: 74  TGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLD 133

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
            KH +FGR+  GM VV+RI  V+ + K D+P +DV I+   V+
Sbjct: 134 NKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score = 94.6 bits (236), Expect = 4e-23
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
           +MG+I  +L+    P T  NF    R  YYNG  FHRII+ FMIQ       G+GG S
Sbjct: 29  SMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGES 86

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  193 bits (493), Expect = 2e-60
 Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDPTGTGRGG+SI+GK F DE  E LKH   G++SMAN+GP+TNGSQFFIT      LD
Sbjct: 53  TGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
            K+ +FG++  G+  +  +  +  + K  RP++DV I    +
Sbjct: 113 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 93.8 bits (234), Expect = 6e-23
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
           S+  H ++G+I +E++ +  P TC NF  LC  NYYNG  FHR I+ FM+Q       G 
Sbjct: 2   SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61

Query: 108 GGAS 111
           GG S
Sbjct: 62  GGNS 65

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  194 bits (494), Expect = 3e-60
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG GG SIYG  F DE H  L+    G+++MAN+G   NGSQFF TL     L+
Sbjct: 77  GGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN 136

Query: 412 GKHAIFGRIYS-GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
            KH IFG++    +  + R+  V+ D ++RP +  KI    V
Sbjct: 137 NKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGV 107
            ++     G+I +EL+ K AP  CRNF +LC   YY+   FHR++  F++Q       G 
Sbjct: 26  KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGS 85

Query: 108 GGAS 111
           GG S
Sbjct: 86  GGES 89

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  192 bits (491), Expect = 1e-59
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG GG S +GK F DE    L HTG GILSMANSGP++N SQFFIT     +LD
Sbjct: 72  GGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD 131

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
            KH IFGR+  G  V+  +  VE+D K DRP ++++I  T V
Sbjct: 132 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 5/58 (8%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
           N G++ +EL+    P TC NF  LC+++YY+G  FHR IR+F+IQ       G GG S
Sbjct: 27  NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGES 84

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  192 bits (489), Expect = 2e-59
 Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSG----PDTNGSQFFITLAPT 407
           GGDPTGTG+GG SIYG+ F DEI+ ELK+   GILSMA+ G    P+TNGSQFFIT +  
Sbjct: 69  GGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSL 128

Query: 408 QWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
             L+G++ IFG++  G   +  +    +DK+ +P+D++ I    +
Sbjct: 129 PQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 94.3 bits (235), Expect = 8e-23
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 50  IILRSLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA---- 104
           +  + +    N G++  EL+    P  C+NF  L    YY    FH+ I+ F+IQ     
Sbjct: 14  LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPT 73

Query: 105 -MGVGGAS 111
             G GG S
Sbjct: 74  GTGKGGES 81

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  187 bits (478), Expect = 1e-57
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 351 AGGDPTGTGRGGSSIY-------GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFIT 403
               P+       S         G  F DE    L H G G+LSMAN G  +N S+FFIT
Sbjct: 63  ELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFIT 122

Query: 404 LAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
               + L+ KH IFGR+  G+ V+++   +ETDK D+P+   K+ +  V
Sbjct: 123 FKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIV 171

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
             G + +EL+   AP  C +F  LC   Y++   FHR IR+FMIQ
Sbjct: 14  TQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQ 58

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  184 bits (469), Expect = 2e-56
 Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 5/103 (4%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG    G  FADE H EL+     +L+MAN+GP TNGSQFFIT+  T  L+
Sbjct: 91  GGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147

Query: 412 GKHAIFGRIYS--GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
            +H IFG +       VV+ I    TD NDRP D V I    +
Sbjct: 148 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 87.5 bits (217), Expect = 3e-20
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 56  VFH-NMGEIIVELYWKHAPNTCRNFAELCRRN---------------YYNGIKFHRIIRD 99
             H N G+I + L+  HAP T  NF  L +                 +Y+G  FHR+I+ 
Sbjct: 27  TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQG 86

Query: 100 FMIQ 103
           FMIQ
Sbjct: 87  FMIQ 90

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  176 bits (448), Expect = 8e-53
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 17/118 (14%)

Query: 352 GGDPTGTGRGG--SSIYGKTFADEIHEELKHTGAGILSMANSGPD--------------T 395
           GGDPTGTGRGG  ++  GK F  E H  LK    G++ +AN G                T
Sbjct: 74  GGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGT 133

Query: 396 NGSQFFITLAPTQWLDGKHAIFGRIYS-GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           NG+QFFITLA    L+  + +FG++    +  + +   +E  K DRP+    I    V
Sbjct: 134 NGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDV 191

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 93.7 bits (233), Expect = 4e-22
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
            +V H ++G++ VEL+ +  P  CRNF +LC   YY    FHR+++DF++Q       G 
Sbjct: 23  KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82

Query: 108 GGAS 111
           GGA 
Sbjct: 83  GGAD 86

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  163 bits (415), Expect = 1e-48
 Identities = 51/97 (52%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD + G GRGG SIYG  F DE    +KH    +LSMAN G DTNGSQFFIT  PT  L
Sbjct: 78  GGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHL 136

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DG H +FG++ SG  VV+ I   +TD   +P  +V+I
Sbjct: 137 DGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 173

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 61  GEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA----- 104
           G ++ EL+    P TC NF  LC           +  +Y    FHR+++DFM+Q      
Sbjct: 24  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83

Query: 105 -MGVGGAS 111
             G GG S
Sbjct: 84  GNGRGGES 91

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  162 bits (412), Expect = 5e-48
 Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 2/97 (2%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD + G G+GG SIYG  F DE +  LKH  A +LSMAN G  TNGSQFFIT  P   L
Sbjct: 88  GGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHL 146

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DG H +FG + SG  V+++I  ++TD   RP  DV++
Sbjct: 147 DGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 183

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQ 103
           +G I+ +L+    P TC+NF  LC           ++  Y G  FHR++++FMIQ
Sbjct: 33  VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQ 87

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  161 bits (410), Expect = 6e-48
 Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG  F DE    +KH    ++SMAN GP+TNGSQFFIT  P   L
Sbjct: 75  GGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHL 133

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           +  H +FG++ SG  VV +I  ++T+  +RP+ DV I
Sbjct: 134 NNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 17/69 (24%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA---- 104
            G I++ELY   AP TC NF  LC           +  +Y G  FHR+I++FMIQ     
Sbjct: 20  AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79

Query: 105 --MGVGGAS 111
              G GG S
Sbjct: 80  KGDGTGGES 88

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  161 bits (410), Expect = 7e-48
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 2/97 (2%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD   G G G +SIY   FADE + +L+H+  G+LSMANSGP TNG QFFIT +   WL
Sbjct: 76  GGDFVNGDGTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWL 134

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG+I  G+ V+++I  V T  N++P   V I
Sbjct: 135 DGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 171

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC--------RRNYYNGIKFHRIIRDFMIQA------M 105
           +G + +EL+    P T  NF + C            Y G  FHR+I+DFMIQ        
Sbjct: 24  VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83

Query: 106 GVGGAS 111
           G G AS
Sbjct: 84  GTGVAS 89

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  159 bits (404), Expect = 8e-47
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 2/97 (2%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT   T WL
Sbjct: 76  GGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 134

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM VV+++   +TD  D+P+ DV I
Sbjct: 135 DGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 171

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
           +G +I  L+ K  P T  NF  L        Y   KFHR+I+DFMIQ        G GG 
Sbjct: 29  VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88

Query: 111 S 111
           S
Sbjct: 89  S 89

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  153 bits (388), Expect = 1e-44
 Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG++F DE +  +KH   G+LSMAN+GP+TN SQFFITL P  WL
Sbjct: 70  GGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWL 128

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM+VV+ +       +      V I
Sbjct: 129 DGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKRSVVI 164

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---------RRNYYNGIKFHRIIRDFMIQ 103
            G II EL+    P TC NF  LC         +  +Y    FHRII  FM Q
Sbjct: 17  AGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQ 69

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  152 bits (387), Expect = 2e-44
 Identities = 51/97 (52%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG  F DE +    H    +LSMAN+GP+TNGSQFFIT  P  WL
Sbjct: 87  GGDFTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWL 145

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM VVK I    +  N +P   V I
Sbjct: 146 DGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCI 181

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC----------RRNYYNGIKFHRIIRDFMIQ 103
            G I +EL+    P T  NF  LC          +   Y G  FHRII  FMIQ
Sbjct: 33  AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQ 86

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  152 bits (386), Expect = 2e-44
 Identities = 52/97 (53%), Positives = 67/97 (69%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG+ F DE + + KHTG G+LSMAN+GP+TNGSQFF+    T+WL
Sbjct: 71  GGDFTRGNGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWL 129

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FGR+  G+ VVK +    +  + +PV D  I
Sbjct: 130 DGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMI 165

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 16/68 (23%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC----------RRNYYNGIKFHRIIRDFMIQA----- 104
            G I++ELY    P T  NF  LC          +  ++ G KFHRII +FMIQ      
Sbjct: 17  SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76

Query: 105 -MGVGGAS 111
             G GG S
Sbjct: 77  GNGTGGES 84

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  151 bits (384), Expect = 4e-44
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYG+ FADE +  +KH   G LSMAN+GP+TNGSQFFIT APT WL
Sbjct: 72  GGDFTNFDGTGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWL 129

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DG+H +FG++  GM VV RI   +T+ +DRPV  VKI
Sbjct: 130 DGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
           +G I + L+ K AP T  NF +LC       Y    FHR+I++FMIQ        G GG 
Sbjct: 25  LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84

Query: 111 S 111
           S
Sbjct: 85  S 85

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  150 bits (381), Expect = 1e-43
 Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD   G G GG SIYG+ F DE + +L+H G G+LSMANSGP+TNGSQFFI      WL
Sbjct: 71  GGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWL 129

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FGR+  G +VVK++  V + K+ +  + V I
Sbjct: 130 DGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVII 165

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
            G I++EL     P T  NF  LC       Y+   FHR+I  FM Q        G GG 
Sbjct: 24  AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83

Query: 111 S 111
           S
Sbjct: 84  S 84

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  152 bits (385), Expect = 1e-43
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHE--ELKHTGAGILSMA----NSGPDTNGSQFFITL 404
            GD     G    ++Y       +       H   G+LS+      SG     S F ITL
Sbjct: 92  SGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITL 151

Query: 405 ------APTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
                      LD    + G++Y G+ V+ +I  +      R      I
Sbjct: 152 DDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSI 200

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 20/64 (31%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC--------------------RRNYYNGIKFHRIIRD 99
           +G + ++L+    P    NF +L                         Y G KFH ++ +
Sbjct: 28  IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87

Query: 100 FMIQ 103
             I 
Sbjct: 88  NYIV 91

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  149 bits (380), Expect = 2e-43
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYGK F DE +  LKHTG G+LSMANSGP+TNGSQFF+T   T WL
Sbjct: 72  GGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 130

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG +  G+ V+++I    + K+ +P   V I
Sbjct: 131 DGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVII 166

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
            G I + L     P T  NF  LC       + G  FHRII  FM Q        G GG 
Sbjct: 25  AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84

Query: 111 S 111
           S
Sbjct: 85  S 85

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  149 bits (378), Expect = 2e-43
 Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYG+ FADE + ++KHT  G+LSMAN+G +TNGSQFFIT  PT WL
Sbjct: 63  GGDFTRHNGTGGKSIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWL 121

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG +  G+ +V+++    +  + +    +KI
Sbjct: 122 DGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKI 157

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
            G I+ +LY +  P T +NF EL    +   Y    FHR+I  FM+Q        G GG 
Sbjct: 16  EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75

Query: 111 S 111
           S
Sbjct: 76  S 76

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  149 bits (378), Expect = 2e-43
 Identities = 51/97 (52%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
            GD T   G GG SIYG  F DE +  LKH G G+LSMAN+GP+TNGSQFFI    T WL
Sbjct: 64  AGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 122

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG +  GM VVK+I    + K+ R    + I
Sbjct: 123 DGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVI 158

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
           +G +++EL     P T  NF  LC       Y G  FHR+I  FM QA       G GG 
Sbjct: 17  LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76

Query: 111 S 111
           S
Sbjct: 77  S 77

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  149 bits (378), Expect = 4e-43
 Identities = 52/98 (53%), Positives = 62/98 (63%), Gaps = 3/98 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYG+ F DE + ELKHT  GILSMAN G  TNGSQFFITL  TQWL
Sbjct: 88  GGDYTAHNGTGGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWL 146

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDK-NDRPVDDVKI 447
           D KH +FG +  GM VV +I    ++    +    ++I
Sbjct: 147 DEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEI 184

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQ 103
           +G I+++L     P T +NF  LC R     Y G  FHRII  FM+Q
Sbjct: 41  LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQ 87

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  148 bits (377), Expect = 5e-43
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T   G GG SIYG+ F DE +  LKHTG GILSMAN+GP+TNGSQFFI  A T+WL
Sbjct: 83  GGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 141

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM++V+ +    + +N +    + I
Sbjct: 142 DGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITI 177

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
           +G +  EL+    P T  NF  L        Y G  FHRII  FM Q        G GG 
Sbjct: 36  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95

Query: 111 S 111
           S
Sbjct: 96  S 96

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  149 bits (377), Expect = 2e-42
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD     G G  SIYG+ F DE + ++KH   G+LSMANSGP+TNG QFFIT    +WL
Sbjct: 125 GGDFINHNGSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWL 183

Query: 411 DGKHAIFGRIYS--GMSVVKRIGLVETD-KNDRPVDDVKI 447
           DGK+ +FGRI     + ++K+I  V       +P   + +
Sbjct: 184 DGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINV 223

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC--------RRNYYNGIKFHRIIRDFMIQ 103
           +G+   EL+    P T  NF + C            Y    FHR+I++FMIQ
Sbjct: 73  LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ 124

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  145 bits (368), Expect = 8e-42
 Identities = 54/100 (54%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD T G G GG SIYG  FADE +   KH   GILSMAN+GP+TNGSQFFIT A T WL
Sbjct: 68  GGDFTRGNGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWL 126

Query: 411 DGKHAIFGRI--YSGMSVVKRIGLVETDK-NDRPVDDVKI 447
           DGKH +FG +      SVVK I  + +   + R     KI
Sbjct: 127 DGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKI 166

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
           +G I+  L+ K  P T +NF ELC       Y    FHRII +FMIQ        G GG 
Sbjct: 21  VGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR 80

Query: 111 S 111
           S
Sbjct: 81  S 81

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  150 bits (380), Expect = 2e-41
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
           GGD +   G GG SIYG+ F DE +   KH   G+LSMAN+G +TNGSQFFIT  PT  L
Sbjct: 84  GGDFSNQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHL 142

Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           DGKH +FG++  GM V K +  VE    ++P     I
Sbjct: 143 DGKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVI 178

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 61  GEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA----- 104
           G I++EL+    P T  NF  LC           +  ++ G  FHRII+ FMIQ      
Sbjct: 30  GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89

Query: 105 -MGVGGAS 111
             G GG S
Sbjct: 90  QNGTGGES 97

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  111 bits (281), Expect = 2e-29
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
           GG      +   +      A+E +  LK+     ++MA  + P +  +QFFI +   ++L
Sbjct: 56  GGGFEPGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFL 112

Query: 411 DGK--------HAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILK 449
           +          +A+FG++  G  +V +I  V+T       D P DDV I K
Sbjct: 113 NHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK 163

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 76.8 bits (190), Expect = 7e-17
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N G I +EL    AP T  NF    ++ +Y+G  FHR+I  FMIQ
Sbjct: 11  NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ 55

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  110 bits (278), Expect = 5e-29
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
           GG      +  ++   +   +E +  LK+T  G L+MA    P +  +QFFI +    +L
Sbjct: 52  GGGFEPGMKQKAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFL 108

Query: 411 DGK--------HAIFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKTHV 452
           +          + +F  +  GM  V +I  V T ++    D P +DV I    V
Sbjct: 109 NFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N G+I+++ +   AP T +NF + CR  +YN   FHR+I  FMIQ
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ 51

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  106 bits (268), Expect = 1e-27
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
           GG  T   +           +E    L++T  G ++MA  +  D+  SQFFI +A   +L
Sbjct: 57  GGGFTEQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFL 113

Query: 411 DG-----KHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILKTHV 452
           D       +A+FG++  GM V  +I  V T       + P   V IL   V
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           + G I +EL  + AP + +NF +     +YN   FHR+I  FMIQ
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ 56

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 91.2 bits (226), Expect = 2e-20
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 34/132 (25%)

Query: 352 GGDPTGTGRGGSS---------------------IYGKTFAD----EIHEELKHTGAGIL 386
            GDP G   G                         YG T  +    +    +     G +
Sbjct: 230 TGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTM 289

Query: 387 SMANSG--PDTNGSQFFI-------TLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK 437
           +MA      D+  SQ F        T + +  LDG++A+FG +      +  + + +  +
Sbjct: 290 AMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIE 349

Query: 438 NDRPVDDVKILK 449
           + + V  ++ L 
Sbjct: 350 SIQVVSGLENLA 361

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 72.4 bits (177), Expect = 5e-14
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 39  CRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIR 98
            R +V   V      ++         + L   +AP T  NF +L  R++Y+G++  R   
Sbjct: 169 GRASVDMKVKIKDNPNI---EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSD- 224

Query: 99  DFMIQ 103
            F++Q
Sbjct: 225 GFVVQ 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 60/267 (22%)

Query: 70  KHAPNTCRNFAELCRRN--------YYNGIKFHRIIRDF-----------MIQAMGVGGA 110
              P      AE  R          + N  K   II              M   + V   
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-P 382

Query: 111 SNVNQLQDVIQNLHCWCN---ENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLE---R 164
            + +    ++  +  W +    ++MV+ + K    S    K P     +I ++ LE   +
Sbjct: 383 PSAHIPTILLSLI--WFDVIKSDVMVV-VNKLHKYSL-VEKQPKESTISIPSIYLELKVK 438

Query: 165 VNNIKDLGVTF--QYNLKFNLHYSEIKSKALRMLGFLY--RHTQDFKHPK---TLTNLY- 216
           + N   L  +    YN+       ++    L    + +   H ++ +HP+       ++ 
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 217 -YTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKI 275
            + ++   + + ST W+           S+ +    +  +K +   +D  Y+ +     +
Sbjct: 499 DFRFLEQKIRHDSTAWNAS--------GSILNTLQQLKFYKPYICDNDPKYERL-----V 545

Query: 276 TSLKNRRDMQDLVFIYKVLHNLIYSPE 302
            ++ +        F+ K+  NLI S  
Sbjct: 546 NAILD--------FLPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 71/324 (21%)

Query: 53  RSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKF-HRIIR-DFMIQAMGVGGA 110
           + ++       +     K   +  ++   L +    + I     +     +   +     
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 111 SNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILIN-------YNINNVQL 162
             V + +++V++  + +    +     +   +   Y  +   L N       YN++  +L
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RL 134

Query: 163 ERVNNIKD-LGVTFQYNLKFN----LHYSEIKSKALRMLGF----LYRHT-QDFK-HPKT 211
           +    ++  L       L+      +           +LG     +       +K   K 
Sbjct: 135 QPYLKLRQAL-----LELRPAKNVLID---------GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 212 LTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMA 271
              +++  +++C        SP  ET ++ L+ + ++        ++T   DH+ +  + 
Sbjct: 181 DFKIFWLNLKNCN-------SP--ETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLR 226

Query: 272 ANKITS-----LKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEK 326
            + I +     LK++     L+    VL N + + +  + FNL         C + +  +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL----VLLN-VQNAKAWNAFNLS--------CKILLTTR 273

Query: 327 NKTNIGEFSPIQRMEKIGNHITSG 350
            K      S         +H +  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT 297

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 394 DTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
           +        T    +  DG   IF +I      ++R+      +  + +D ++ L  
Sbjct: 11  EVKPEVKPETHINLKVSDGSSEIFFKIKKTT-PLRRLMEAFAKRQGKEMDSLRFLYD 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.96
3fsi_A	255	RT, reverse transcriptase domain; transferase/DNA	91.67

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=4.8e-40  Score=292.77  Aligned_cols=104  Identities=50%  Similarity=0.916  Sum_probs=94.8

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      ||||++++|+|++++||..++||..+.++|.++|+|||||++||+++|||||+++++++||++|+|||+|++|||+|++|
T Consensus        57 QgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I  136 (160)
T 2fu0_A           57 QTGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDI  136 (160)
T ss_dssp             EECCTTSSSSCCCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             EeCCcCCCCCCCCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHH
Confidence            45555566677788888899999866899998999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCcccEEEEEEEee
Q psy1031         431 GLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       431 ~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      ++++++++++|.++|+|.+|+|.+
T Consensus       137 ~~~~t~~~~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A          137 EKVRTDKRDKPLEDIKILNIKINN  160 (160)
T ss_dssp             HTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred             HhCCcCCCCCcCCCeEEEEEEEeC
Confidence            999999889999999999999864

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=8.1e-40  Score=292.02  Aligned_cols=105  Identities=46%  Similarity=0.803  Sum_probs=95.2

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      ||||++++|+||+++||..++||..+.++|..+|+|||||++||+++|||||+++++++||++|+|||+|++|||+|++|
T Consensus        52 QgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I  131 (161)
T 2ok3_A           52 QTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL  131 (161)
T ss_dssp             EECCTTSSSSCCCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             ecCCCCCCCCCCCcccCCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHH
Confidence            45555555667778888889999877899988999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCC-CCCCcccEEEEEEEeec
Q psy1031         431 GLVETDKN-DRPVDDVKILKTHVRNT  455 (456)
Q Consensus       431 ~~~~~~~~-~~P~~~i~I~~~~v~~~  455 (456)
                      ++++++++ ++|.++|+|.+|+|+++
T Consensus       132 ~~~~~~~~~~~P~~~v~I~~~~i~~~  157 (161)
T 2ok3_A          132 EKLPVNEKTYRPLNDVHIKDITIHAN  157 (161)
T ss_dssp             HTCCBCTTTCCBSSCCBEEEEEEECC
T ss_pred             HhCCccCCCCCcCCCeEEEEEEEecC
Confidence            99999887 99999999999999875

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.5e-39  Score=291.26  Aligned_cols=103  Identities=72%  Similarity=1.248  Sum_probs=94.9

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      ||||++++|+|++++||..++||+.+.++|..+|+|||||++||+|+|||||+++++++||++|+|||+|++|||+|++|
T Consensus        63 QgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I  142 (166)
T 2x7k_A           63 QGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV  142 (166)
T ss_dssp             EECCTTSSSSCCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             EcCCCCCCCCCCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHH
Confidence            45666666677788888899999877899988999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCcccEEEEEEEe
Q psy1031         431 GLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       431 ~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ++++++++++|.++|+|.+|+|+
T Consensus       143 ~~~~t~~~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A          143 GMVETNSQDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             TTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             HcCCcCCCCCcCCCeEEEEEEEe
Confidence            99999988999999999999986

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.9e-39  Score=296.83  Aligned_cols=105  Identities=53%  Similarity=0.896  Sum_probs=96.5

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      ||||++++|+||+++||..++||+++.++|+.+|+|||||++||+|||||||+++++++||++|+|||+|++|||||++|
T Consensus        71 QgGd~~~~g~Gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I  150 (197)
T 1zkc_A           71 QGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM  150 (197)
T ss_dssp             EECCTTSSSSCCCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             EcCCCCCCCCCCCccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHH
Confidence            45566666777788888999999778899998999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCC-CCCCcccEEEEEEEeec
Q psy1031         431 GLVETDKN-DRPVDDVKILKTHVRNT  455 (456)
Q Consensus       431 ~~~~~~~~-~~P~~~i~I~~~~v~~~  455 (456)
                      ++++++.+ ++|..+|+|.+|+|+++
T Consensus       151 ~~~~t~~~~~~P~~~i~I~~~~v~~d  176 (197)
T 1zkc_A          151 ENVESDPKTDRPKEEIRIDATTVFVD  176 (197)
T ss_dssp             HHSCBCTTTCCBSSCCEEEEEEEEEC
T ss_pred             HcCCCCCCCCCcCCCeEEEEEEEEcC
Confidence            99999886 99999999999999875

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.7e-39  Score=295.45  Aligned_cols=104  Identities=47%  Similarity=0.841  Sum_probs=93.9

Q ss_pred             CCCCCCCCCCCcccccccccccccccccccCcceEEeeccC----CCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHH
Q psy1031         352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSG----PDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVV  427 (456)
Q Consensus       352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~----~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l  427 (456)
                      |||++++|+||+++||..+++|+.+.++|..+|+|||||++    ||+|||||||+++++++||++|+|||+|++|||+|
T Consensus        69 gGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv  148 (185)
T 2poe_A           69 GGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETL  148 (185)
T ss_dssp             EEETTSSSSCCCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHH
T ss_pred             cCCCCCCCCCCCccCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHH
Confidence            44444455666778888899998788999889999999998    99999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         428 KRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       428 ~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      ++|++++++.+++|.++|+|.+|+|+++
T Consensus       149 ~~I~~~~t~~~~~P~~~v~I~~~~i~~d  176 (185)
T 2poe_A          149 NTLENCPSDKSHKPIDEIIIKDIVIHSN  176 (185)
T ss_dssp             HHHHHSCBCTTSCBSSCCEEEEEEEECC
T ss_pred             HHHHhCCcCCCCCcCCCeEEEEEEEECC
Confidence            9999999998899999999999999864

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-39  Score=296.20  Aligned_cols=104  Identities=60%  Similarity=0.998  Sum_probs=92.2

Q ss_pred             CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031         352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG  431 (456)
Q Consensus       352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~  431 (456)
                      |||++++|+||+++||..+++|.++.++|..+|+||||+.+||++||||||+++++++||++|+|||+|++|||+|++|+
T Consensus        91 gGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~  170 (196)
T 2b71_A           91 GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIA  170 (196)
T ss_dssp             EEETTSSSSCCCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHH
T ss_pred             cCCCCCCCCCCCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHH
Confidence            44444455667778888899997778999889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccEEEEEEEeec
Q psy1031         432 LVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       432 ~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +++++.+++|.++|+|.+|+|+++
T Consensus       171 ~~~t~~~~~P~~~i~I~~~~i~~d  194 (196)
T 2b71_A          171 SVQTTATNKPIFDLKILRTSTAVN  194 (196)
T ss_dssp             TSCBCTTCCBSSCCEEEEEEC---
T ss_pred             hCCcCCCCCCCCCeEEEEEEEecC
Confidence            999998899999999999999865

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.5e-39  Score=289.85  Aligned_cols=102  Identities=56%  Similarity=0.969  Sum_probs=93.4

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI  430 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i  430 (456)
                      ||||++++|+|++++||..++||+...++|.++|+|||||.+||+++|||||+++++++||++|+|||+|++|||+|++|
T Consensus        73 QgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I  152 (176)
T 2a2n_A           73 QTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRI  152 (176)
T ss_dssp             EECCTTSSSSCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHH
T ss_pred             EccCCCCCCCCCCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHH
Confidence            45555566777788888899999866899998999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCC-CCCCCCcccEEEEEEE
Q psy1031         431 GLVETD-KNDRPVDDVKILKTHV  452 (456)
Q Consensus       431 ~~~~~~-~~~~P~~~i~I~~~~v  452 (456)
                      ++++++ .+++|.++|+|.+|+|
T Consensus       153 ~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          153 SNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             HTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             HcCCccCCCCccCCCeEEEEEEE
Confidence            999998 6899999999999987

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=7.2e-39  Score=295.63  Aligned_cols=89  Identities=42%  Similarity=0.711  Sum_probs=84.4

Q ss_pred             cccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccE
Q psy1031         367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVK  446 (456)
Q Consensus       367 g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~  446 (456)
                      |..|+||.++.++|+.+|+|||||++||++||||||+++++++||++|+|||+|++|||||++|++++++.+++|..+|+
T Consensus        86 g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~  165 (201)
T 3bo7_A           86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPK  165 (201)
T ss_dssp             CCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCB
T ss_pred             CCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeE
Confidence            45788997788999889999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             EEEEEEeec
Q psy1031         447 ILKTHVRNT  455 (456)
Q Consensus       447 I~~~~v~~~  455 (456)
                      |.+|+|++|
T Consensus       166 I~~~~v~~d  174 (201)
T 3bo7_A          166 VEEIIVFKN  174 (201)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEcC
Confidence            999999875

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.5e-38  Score=287.69  Aligned_cols=102  Identities=49%  Similarity=0.795  Sum_probs=93.1

Q ss_pred             cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031         351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR  429 (456)
Q Consensus       351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~  429 (456)
                      ||||++ ++|+|++++||..|+||. ..++|+++|+|||||++||+|+|||||+++++++||++|+|||+|++|||+|++
T Consensus        75 QgGd~~~~~G~gg~si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~  153 (177)
T 1mzw_A           75 QGGDFVNGDGTGVASIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRK  153 (177)
T ss_dssp             EECCTTTSSSCCCCCTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred             EcCCcccCCCCCCCccCCCcccCcc-cccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHH
Confidence            455543 566777888888999996 689999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      |++++++++++|.++|+|.+|+++
T Consensus       154 I~~~~t~~~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          154 IENVPTGPNNKPKLPVVISQCGEM  177 (177)
T ss_dssp             HHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             HHhCCcCCCCCCCCCEEEEeceeC
Confidence            999999888999999999999975

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.5e-38  Score=286.81  Aligned_cols=119  Identities=45%  Similarity=0.686  Sum_probs=107.2

Q ss_pred             cccCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCC
Q psy1031         330 NIGEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQ  408 (456)
Q Consensus       330 ~~~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~  408 (456)
                      .+|+++.|||+++  ++++  ||||++ ++|+|++++||..++||. +.++|+++|+|||||.+||+|+|||||++++++
T Consensus        60 ~~Y~g~~FhRvi~--~f~i--QgGd~~~~~g~gg~si~g~~f~dE~-~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~  134 (179)
T 2wfi_A           60 LHYKSCLFHRVVK--DFMV--QGGDFSEGNGRGGESIYGGFFEDES-FAVKHNKEFLLSMANRGKDTNGSQFFITTKPTP  134 (179)
T ss_dssp             SCCTTCBEEEEET--TTEE--EECCTTTSSSSCCCCTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCG
T ss_pred             CeECCCEEEEEEC--CCEE--EcccccCCCCCCCCcccCCcccccc-cCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCc
Confidence            4556666777665  6666  888876 788889999999999996 689999999999999999999999999999999


Q ss_pred             CCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         409 WLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       409 ~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      +||++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++
T Consensus       135 ~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          135 HLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL  179 (179)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred             ccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence            999999999999999999999999999988999999999999975

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=3.5e-38  Score=285.53  Aligned_cols=118  Identities=45%  Similarity=0.697  Sum_probs=102.1

Q ss_pred             cCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCC
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL  410 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~l  410 (456)
                      |+++.|||+++  ++++  ||||++ ++|+|++++||..++||. ..++|..+|+|||||++||+|+|||||+++++++|
T Consensus        59 Y~g~~FhRvi~--~f~i--QgGd~~~~~g~gg~si~g~~f~dE~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~L  133 (177)
T 1a58_A           59 YKGSTFHRVIK--NFMI--QGGDFTKGDGTGGESIYGGMFDDEE-FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHL  133 (177)
T ss_dssp             CTTCBEEEEET--TTEE--EECCCSSSSSSCCCCTTSSCBCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred             eCCCEEEEEEC--CCEE--EeCCccCCCCCCCCcccCCcccCcc-cCcccCCCeEEEEeeCCCCCceeEEEEECCCCCcc
Confidence            33444444433  4444  667765 677888899999999996 67899999999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       411 d~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++.
T Consensus       134 Dg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l~  177 (177)
T 1a58_A          134 NNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV  177 (177)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEEC
Confidence            99999999999999999999999999889999999999999873

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=291.67  Aligned_cols=104  Identities=71%  Similarity=1.235  Sum_probs=93.4

Q ss_pred             CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031         352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG  431 (456)
Q Consensus       352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~  431 (456)
                      |||++++|+|++++||..+++|+.+.++|..+|+|||||.+||+|+|||||+++++++||++|+|||+|++|||+|++|+
T Consensus        64 gGd~~~~g~gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~  143 (203)
T 2k7n_A           64 GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVG  143 (203)
T ss_dssp             EECSSSSSSCCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHH
T ss_pred             cCCCCCCCCCCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHH
Confidence            44444455566777788899998778999889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccEEEEEEEeec
Q psy1031         432 LVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       432 ~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +++++++++|.++|+|.+|+|+++
T Consensus       144 ~~~t~~~~~P~~~V~I~~~~v~~~  167 (203)
T 2k7n_A          144 MVETNSQDRPVDDVKIIKAYPSGG  167 (203)
T ss_dssp             SCCEEETTEECCCCBEEEEEECCC
T ss_pred             cCCcCCCCCcCCCeEEEEEEEEec
Confidence            999988899999999999999864

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=287.50  Aligned_cols=121  Identities=46%  Similarity=0.686  Sum_probs=108.7

Q ss_pred             cccCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCC
Q psy1031         330 NIGEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQ  408 (456)
Q Consensus       330 ~~~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~  408 (456)
                      .+|+++.|||+++  ++++  ||||++ ++|+|++++||..++||. +.++|+++|+|||||.+||+|+|||||++++++
T Consensus        70 ~~Y~g~~FhRVi~--~fmi--QgGd~~~~~G~gg~siyg~~f~dE~-~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~  144 (192)
T 2he9_A           70 LCYKGSTFHRVVK--NFMI--QGGDFSEGNGKGGESIYGGYFKDEN-FILKHDRAFLLSMANRGKHTNGSQFFITTKPAP  144 (192)
T ss_dssp             SCCTTCBEEEEET--TTEE--EECCTTTSSSSCCCCTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCG
T ss_pred             CeECCCEEEEEEC--CCEE--EcCcccCCCCCCCCcccCCcccCcc-ccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCc
Confidence            4566666777665  6676  888876 788899999999999996 689999999999999999999999999999999


Q ss_pred             CCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         409 WLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       409 ~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +||++|+|||+|++|||||++|++++++++++|..+|+|.+|+++..
T Consensus       145 ~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          145 HLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEECC-
T ss_pred             ccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEEEcc
Confidence            99999999999999999999999999998899999999999999863

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=3.9e-38  Score=283.02  Aligned_cols=95  Identities=57%  Similarity=0.933  Sum_probs=88.5

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+|++++||..++||. +.++|+ +|+|||||++||+|+|||||+++++++||++|+|||+|++|||+|++|++++++
T Consensus        78 ~~g~gg~si~g~~f~dE~-~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~  155 (172)
T 2haq_A           78 FDGTGGKSIYGEKFADEN-LNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTN  155 (172)
T ss_dssp             SSSSCCCCSSSSCBCCCC-CCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred             CCCCCCccccCCcccCcC-CCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcC
Confidence            455667788888999994 789999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccEEEEEEEe
Q psy1031         437 KNDRPVDDVKILKTHVR  453 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~  453 (456)
                      ++++|.++|+|.+|+++
T Consensus       156 ~~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          156 SHDRPVKPVKIVASGEL  172 (172)
T ss_dssp             GGGCBSSCEEEEEEEEC
T ss_pred             CCCcCCCCeEEEEeEEC
Confidence            88899999999999975

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=6.7e-38  Score=282.68  Aligned_cols=118  Identities=47%  Similarity=0.775  Sum_probs=102.5

Q ss_pred             cCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCC
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL  410 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~l  410 (456)
                      |+++.|||+++  ++++  ||||++ ++|+|++++||..++||. +.++|.++|+|||||++||+|||||||+++++++|
T Consensus        55 Y~g~~FhRvi~--~f~i--QgGd~~~~~G~gg~siyg~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~L  129 (173)
T 2igv_A           55 FKGSKFHRIIP--NFMI--QGGDFTRGNGTGGESIYGEKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWL  129 (173)
T ss_dssp             CTTCBCCEEET--TTEE--EECCTTTSSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGG
T ss_pred             ECCCEEEEEEC--CCEE--EcCCCCCCCCCCCCccCCCcccCcc-cccCCCCCeEEEEeeCCCCCcceEEEEEcCCcccc
Confidence            34444555444  4555  677765 678888999999999996 68999999999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       411 d~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      |++|+|||+|++|||+|++|++++++ +++|.++|+|.+|++++.
T Consensus       130 Dg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~~  173 (173)
T 2igv_A          130 DGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQLKA  173 (173)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSCEEEEEEEEECC
T ss_pred             CCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCCEEEEEeEEEcC
Confidence            99999999999999999999999884 689999999999999863

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=6.9e-38  Score=281.80  Aligned_cols=101  Identities=50%  Similarity=0.843  Sum_probs=92.8

Q ss_pred             cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031         351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR  429 (456)
Q Consensus       351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~  429 (456)
                      ||||++ ++|+|++++||..++||. +.++|+++|+|||||.+||+|+|||||+++++++||++|+|||+|++|||+|++
T Consensus        69 QgGd~~~~~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~  147 (170)
T 1qng_A           69 QGGDITNGNGSGGESIYGRSFTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVRE  147 (170)
T ss_dssp             EECCTTTSSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred             EcCCccCCCCCCCccccCCcccccc-cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHH
Confidence            566654 567788889999999996 789999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      |+++++ ++++|.++|+|.+|+++
T Consensus       148 I~~~~t-~~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          148 MEKEGA-KSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             HHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred             HHhCCC-CCCCCCCCeEEEeceeC
Confidence            999999 67899999999999975

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.6e-37  Score=279.53  Aligned_cols=96  Identities=49%  Similarity=0.838  Sum_probs=88.2

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+||+++||..++||. +.++|.++|+|||||++||+|+|||||+++++++||++|+|||+|++|||+|++|++++++
T Consensus        77 ~~G~gg~si~g~~f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~  155 (172)
T 2cmt_A           77 GDGTGGKSIYGRKFDDEN-FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK  155 (172)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT
T ss_pred             CCCCCCCccCCCcccccc-cCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC
Confidence            445677788888899996 6899998999999999999999999999999999999999999999999999999999885


Q ss_pred             CCCCCCcccEEEEEEEee
Q psy1031         437 KNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~~  454 (456)
                       +++|.++|+|.+|++++
T Consensus       156 -~~~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          156 -SGKVKEPVIISRCGELI  172 (172)
T ss_dssp             -TCCCSSCEEEEEEEEEC
T ss_pred             -CCCCCCCEEEEEeEeEC
Confidence             68999999999999874

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.8e-37  Score=277.79  Aligned_cols=96  Identities=50%  Similarity=0.839  Sum_probs=87.7

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+|++++||..++||. +.++|.++|+|||||++||+++|||||+++++++||++|+|||+|++|||+|++|+++++ 
T Consensus        70 ~~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-  147 (165)
T 2z6w_A           70 HNGTGGKSIYGSRFPDEN-FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-  147 (165)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-
T ss_pred             CCCCCCCcccCCcccCcc-cccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-
Confidence            345667778888899995 789999899999999999999999999999999999999999999999999999999886 


Q ss_pred             CCCCCCcccEEEEEEEee
Q psy1031         437 KNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~~  454 (456)
                      .+++|.++|+|.+|+++.
T Consensus       148 ~~~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A          148 KSGRTSKKIVITDCGQLS  165 (165)
T ss_dssp             TTSCCSSCEEEEEEEECC
T ss_pred             CCCCCCCcEEEEEeEEEC
Confidence            578999999999999873

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-37  Score=284.24  Aligned_cols=117  Identities=45%  Similarity=0.710  Sum_probs=106.7

Q ss_pred             cccCCccceeeeeccceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCC
Q psy1031         330 NIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQW  409 (456)
Q Consensus       330 ~~~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~  409 (456)
                      .+|+++.|||+++  ++++  ||||++++|+|+   ||..|+||+++.++|.++|+|||||++||+|||||||+++++++
T Consensus        73 ~~Y~g~~FhRVi~--~fmi--QgGd~~g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~  145 (191)
T 1w74_A           73 PFYDGAVFHRVIQ--GFMI--QGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH  145 (191)
T ss_dssp             CSSTTEEEEEEET--TTEE--EECCTTSSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGG
T ss_pred             CccCCCEEEEEeC--CCEE--ecCCCCCCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcc
Confidence            4577777888766  7777  888888888877   47899999778899999999999999999999999999999999


Q ss_pred             CCCCccEEEEEEc--CHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         410 LDGKHAIFGRIYS--GMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       410 ld~~~~vfG~V~~--G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ||++|+|||+|++  |||+|++|++++++.+++|.++|+|.+|+|+
T Consensus       146 LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          146 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             GTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             cCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEC
Confidence            9999999999999  9999999999999988999999999999984

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.1e-37  Score=281.29  Aligned_cols=96  Identities=53%  Similarity=0.904  Sum_probs=89.9

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+||+++||..++||. ..++|..+|+|||||.+||+|+|||||+++++++||++|+|||+|++|||+|++|++++++
T Consensus        82 ~~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~  160 (188)
T 3ich_A           82 GDGTGGKSIYGERFPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTD  160 (188)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred             CCCCCCccccCCcccccc-cCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcC
Confidence            456677788888999994 7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccEEEEEEEe
Q psy1031         437 KNDRPVDDVKILKTHVR  453 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~  453 (456)
                      .+++|.++|+|.+|+++
T Consensus       161 ~~~~P~~~v~I~~~~~l  177 (188)
T 3ich_A          161 SRDKPLKDVIIADCGKI  177 (188)
T ss_dssp             TTSCBSSCEEEEEEEEE
T ss_pred             CCCeECCCEEEEEeEEE
Confidence            88899999999999987

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=4.3e-37  Score=275.42  Aligned_cols=96  Identities=46%  Similarity=0.810  Sum_probs=87.5

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+|++++||..+++|. +.++|.++|+|||||.+||+++|||||+++++++||++|+|||+|++|||+|++|++++++
T Consensus        69 ~~g~gg~si~g~~~~dE~-~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~  147 (164)
T 3pmp_A           69 HNGTGGKSIYGEKFADEN-FQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA  147 (164)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             CCCCCCcccCCccccccc-cccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC
Confidence            345566778888899994 7899998999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccEEEEEEEee
Q psy1031         437 KNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~~  454 (456)
                       +++|.++|+|.+|+++.
T Consensus       148 -~~~P~~~v~I~~cg~l~  164 (164)
T 3pmp_A          148 -SGKTNATIKITDCGTVA  164 (164)
T ss_dssp             -TCCCSSCEEEEEEEEC-
T ss_pred             -CCCcccCEEEEeCeEEC
Confidence             78999999999999874

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=280.46  Aligned_cols=104  Identities=46%  Similarity=0.793  Sum_probs=93.0

Q ss_pred             cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHH--H
Q psy1031         351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVV--K  428 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l--~  428 (456)
                      ||||++++|+||+++||..++||....++|..+|+|||||.+||+|+|||||+++++++||++|+|||+|+ |++++  +
T Consensus        76 QgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~  154 (185)
T 2hq6_A           76 QGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNML  154 (185)
T ss_dssp             EECCTTSSSSCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHH
T ss_pred             EcCCCCCCCCCCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhh
Confidence            45555556677778888899999877899988999999999999999999999999999999999999999 88874  6


Q ss_pred             HhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         429 RIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       429 ~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +|++++++++++|.++|+|.+|+++++
T Consensus       155 ~i~~~~~~~~~~P~~~v~I~~~~v~~~  181 (185)
T 2hq6_A          155 RLSEVDIDDDERPHNPHKIKSCEVLFN  181 (185)
T ss_dssp             HTTCSCBCTTSCBSSCCEEEEEEEEEC
T ss_pred             HHhhCCcCCCCCCCCCeEEEEEEEeCC
Confidence            899999988999999999999999875

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.9e-37  Score=280.80  Aligned_cols=113  Identities=48%  Similarity=0.771  Sum_probs=97.4

Q ss_pred             CccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCC
Q psy1031         334 FSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG  412 (456)
Q Consensus       334 ~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~  412 (456)
                      ++.|||+++  ++++  ||||++ ++|+|++++||..|+||. +.++|.++|+|||||.+||+|||||||+++++++||+
T Consensus        73 g~~FhRVi~--~f~i--QgGd~~~~~G~gg~si~g~~f~dE~-~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg  147 (186)
T 2poy_A           73 GSFFHRIIP--QFMI--QGGDFTRGDGTGGESIYGSKFRDEN-FVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDG  147 (186)
T ss_dssp             TCBCCEEET--TTEE--EECCTTTSSSSCCCCTTC-CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTT
T ss_pred             CCEEEEEeC--CCEE--EeCCCCCCCCCCCCccCCCcccCcc-cccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCC
Confidence            444444443  4554  667765 677888899999999996 7899999999999999999999999999999999999


Q ss_pred             CccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEE
Q psy1031         413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV  452 (456)
Q Consensus       413 ~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v  452 (456)
                      +|+|||+|++|||||++|+++++ ++++|.++|+|.+|++
T Consensus       148 ~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          148 KHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV  186 (186)
T ss_dssp             TSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEC
T ss_pred             CeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEeCCC
Confidence            99999999999999999999998 4789999999999974

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=5e-37  Score=276.76  Aligned_cols=96  Identities=50%  Similarity=0.837  Sum_probs=88.0

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+||+++||..|+||. +.++|..+|+|||||++||+|+|||||+++++++||++|+|||+|++|||+|++|++++++
T Consensus        78 ~~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~  156 (173)
T 2r99_A           78 HNGTGGKSIYGKKFDDEN-FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK  156 (173)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             CCCCCCCccCCCcccCcc-cCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC
Confidence            345667788888899995 6899999999999999999999999999999999999999999999999999999998886


Q ss_pred             CCCCCCcccEEEEEEEee
Q psy1031         437 KNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~~  454 (456)
                       +++|.++|+|.+|+++.
T Consensus       157 -~~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          157 -DGKPKQKVIIADCGEYV  173 (173)
T ss_dssp             -TCCCSSCEEEEEEEECC
T ss_pred             -CCCCCCCeEEEEeeeEC
Confidence             58999999999999874

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=6.6e-37  Score=279.32  Aligned_cols=96  Identities=52%  Similarity=0.891  Sum_probs=89.1

Q ss_pred             CCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCC
Q psy1031         358 TGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK  437 (456)
Q Consensus       358 ~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~  437 (456)
                      +|+|+.++||..+++|. ..++|.++|+|||||.+||+|||||||+++++++||++|+|||+|++|||+|++|+++++++
T Consensus        80 ~g~gg~si~g~~f~de~-~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~  158 (185)
T 4fru_A           80 DGTGGKSIYGERFPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDG  158 (185)
T ss_dssp             SSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred             CCCCCccccCCccCccc-cccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCC
Confidence            34566778888899996 68999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcccEEEEEEEee
Q psy1031         438 NDRPVDDVKILKTHVRN  454 (456)
Q Consensus       438 ~~~P~~~i~I~~~~v~~  454 (456)
                      +++|.++|+|.+|+++.
T Consensus       159 ~~~P~~~v~I~~~g~l~  175 (185)
T 4fru_A          159 RDKPLKDVTIADCGKIE  175 (185)
T ss_dssp             TSCBSSCEEEEEEEEEE
T ss_pred             CCcCCCCEEEEEceEEe
Confidence            99999999999999874

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=9.4e-37  Score=277.45  Aligned_cols=96  Identities=49%  Similarity=0.836  Sum_probs=87.1

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD  436 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~  436 (456)
                      ++|+|+.++||..+++|. +.++|.++|+|||||.+||+++|||||+++++++||++|+|||+|++|||||++|++++++
T Consensus        89 ~~g~gg~si~g~~~~de~-~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~  167 (184)
T 3rdd_A           89 HNGTGGKSIYGEKFEDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR  167 (184)
T ss_dssp             SSSSCCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT
T ss_pred             CCCCCCcccCCCcccCcc-cccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC
Confidence            345566677788888886 6789999999999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCcccEEEEEEEee
Q psy1031         437 KNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       437 ~~~~P~~~i~I~~~~v~~  454 (456)
                       +++|..+|+|.+|++++
T Consensus       168 -~g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          168 -NGKTSKKITIADCGQLE  184 (184)
T ss_dssp             -TSCCSSCEEEEEEEECC
T ss_pred             -CCCCcCCeEEEeCeEEC
Confidence             78999999999999975

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-37  Score=278.48  Aligned_cols=96  Identities=52%  Similarity=0.799  Sum_probs=64.5

Q ss_pred             CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEc--CHHHHHHhhcCC
Q psy1031         357 GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS--GMSVVKRIGLVE  434 (456)
Q Consensus       357 ~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~--G~~~l~~i~~~~  434 (456)
                      ++|+|++++||..++||. +.++|.++|+|||||.+||+|+|||||+++++++||++|+|||+|++  |||+|++|++++
T Consensus        74 ~~g~gg~si~g~~f~dE~-~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~  152 (172)
T 2c3b_A           74 GNGTGGRSIYGDKFADEN-FSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG  152 (172)
T ss_dssp             --------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTC
T ss_pred             CCCCCCcccCCCcccCcc-cccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCC
Confidence            445566777888888994 77889889999999999999999999999999999999999999999  999999999999


Q ss_pred             CCCCC-CCCcccEEEEEEEe
Q psy1031         435 TDKND-RPVDDVKILKTHVR  453 (456)
Q Consensus       435 ~~~~~-~P~~~i~I~~~~v~  453 (456)
                      ++.++ +|.++|+|.+|+++
T Consensus       153 t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          153 SSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             CTTSCCCSSSCCEEEEEEEC
T ss_pred             CCCCCccCCCCeEEEeCeeC
Confidence            98654 99999999999975

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-36  Score=284.22  Aligned_cols=102  Identities=43%  Similarity=0.733  Sum_probs=93.4

Q ss_pred             cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEE--cCHHHH
Q psy1031         351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIY--SGMSVV  427 (456)
Q Consensus       351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~--~G~~~l  427 (456)
                      ||||++ ++|+|++++||..|+||. +.++|.++|+|||||.+||+|+|||||+++++++||++|+|||+|+  +|||||
T Consensus       124 QgGD~~~g~G~Gg~siyg~~f~dE~-~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv  202 (229)
T 1z81_A          124 QGGDFINHNGSGSLSIYGEKFDDEN-FDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLL  202 (229)
T ss_dssp             EECCTTTSSSCCCCBTTBSCCCCCC-CCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHH
T ss_pred             EcCCCcCCCCCCCCccCCCcccccc-cccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHH
Confidence            455553 567788888999999996 7899988999999999999999999999999999999999999999  999999


Q ss_pred             HHhhcCCCCCC-CCCCcccEEEEEEEe
Q psy1031         428 KRIGLVETDKN-DRPVDDVKILKTHVR  453 (456)
Q Consensus       428 ~~i~~~~~~~~-~~P~~~i~I~~~~v~  453 (456)
                      ++|++++++++ ++|.++|+|.+|+++
T Consensus       203 ~~I~~~~t~~~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          203 KKIENVSVTPYIYKPKIPINVVECGEL  229 (229)
T ss_dssp             HHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             HHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence            99999999876 999999999999975

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-36  Score=285.80  Aligned_cols=104  Identities=41%  Similarity=0.663  Sum_probs=89.4

Q ss_pred             cCCCCCCCCCCCcccc--cccccccccccccccCcceEEeeccCC--------------CCCcceEEEEeCCCCCCCCCc
Q psy1031         351 AGGDPTGTGRGGSSIY--GKTFADEIHEELKHTGAGILSMANSGP--------------DTNGSQFFITLAPTQWLDGKH  414 (456)
Q Consensus       351 q~Gd~~~~g~g~~~~~--g~~~~~e~~~~~~h~~~G~l~ma~~~~--------------~~~~sqFfI~~~~~~~ld~~~  414 (456)
                      ||||++++|+||+++|  |..|+||+.+.++|+.+|+||||+.++              ++||||||||++++++||++|
T Consensus        73 QgGdp~~~G~Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~  152 (232)
T 3bkp_A           73 QGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAY  152 (232)
T ss_dssp             EECCTTSSSSCCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTS
T ss_pred             EcCCCCCCCCCCCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCc
Confidence            3445555556666666  778899987789999999999999986              699999999999999999999


Q ss_pred             cEEEEEEcCHHH--HHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         415 AIFGRIYSGMSV--VKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       415 ~vfG~V~~G~~~--l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      +|||+|+ ||++  |++|++++++.+++|..+|+|.+|+|+++
T Consensus       153 tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~d  194 (232)
T 3bkp_A          153 TLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWN  194 (232)
T ss_dssp             CEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEEC
T ss_pred             cEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcC
Confidence            9999999 7766  89999999998999999999999999875

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1e-35  Score=272.43  Aligned_cols=95  Identities=52%  Similarity=0.807  Sum_probs=87.3

Q ss_pred             CCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCC
Q psy1031         358 TGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK  437 (456)
Q Consensus       358 ~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~  437 (456)
                      +|+|+.++||..+++|. +.++|.++|+|||||.+||+++|||||+++++++||++|+|||+|++|||||++|++++++ 
T Consensus        95 ~g~gg~si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-  172 (193)
T 3k2c_A           95 NGTGGRSIYGEKFPDEN-FELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-  172 (193)
T ss_dssp             SSSCCCCTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-
T ss_pred             CCcCCcccCCCcccccc-cccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-
Confidence            44566777788888985 7899999999999999999999999999999999999999999999999999999999997 


Q ss_pred             CCCCC--cccEEEEEEEee
Q psy1031         438 NDRPV--DDVKILKTHVRN  454 (456)
Q Consensus       438 ~~~P~--~~i~I~~~~v~~  454 (456)
                      +++|.  .+|+|.+|++++
T Consensus       173 ~g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          173 SGQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             TCCCCTTCCEEEEEEEECC
T ss_pred             CCcCccCccEEEEEceEeC
Confidence            67999  999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=7.3e-36  Score=280.83  Aligned_cols=117  Identities=24%  Similarity=0.352  Sum_probs=101.9

Q ss_pred             cCCccceeeeeccceeecCcCCC-CCCCCCCCccccccc-----ccccccccccccCcceEEeec----cCCCCCcceEE
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGD-PTGTGRGGSSIYGKT-----FADEIHEELKHTGAGILSMAN----SGPDTNGSQFF  401 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd-~~~~g~g~~~~~g~~-----~~~e~~~~~~h~~~G~l~ma~----~~~~~~~sqFf  401 (456)
                      |+++.|||+++  ++++  |||| +.++|+||+++||..     |+ |  +.++|.++|+|||||    ++||+||||||
T Consensus        76 Y~gt~FHRVi~--~Fmi--QgGd~~~g~G~Gg~siyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFF  148 (234)
T 2ose_A           76 YEGCKFHNVLH--NNYI--VSGDIYNSNGSSAGTVYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFM  148 (234)
T ss_dssp             STTCBCCEEET--TTEE--EECCCC----CCCCCTTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEE
T ss_pred             ECCcEEEEEEC--CCEE--EcCCccCCCCCCCccccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEE
Confidence            67777888776  7777  8888 468888888888887     55 3  578998899999999    88999999999


Q ss_pred             EEeCC------CCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         402 ITLAP------TQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       402 I~~~~------~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      |++++      ++|||++|+|||+|++|||||++|++++++.+++|.++|+|.+|+++++
T Consensus       149 It~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~  208 (234)
T 2ose_A          149 ITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD  208 (234)
T ss_dssp             EESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCC
T ss_pred             EEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecC
Confidence            99999      9999999999999999999999999999998899999999999999864

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1e-35  Score=267.59  Aligned_cols=84  Identities=33%  Similarity=0.552  Sum_probs=75.8

Q ss_pred             cccccccccccccCcceEEeec-cCCCCCcceEEEEeCCCCCCCCC--------ccEEEEEEcCHHHHHHhhcCCCCC--
Q psy1031         369 TFADEIHEELKHTGAGILSMAN-SGPDTNGSQFFITLAPTQWLDGK--------HAIFGRIYSGMSVVKRIGLVETDK--  437 (456)
Q Consensus       369 ~~~~e~~~~~~h~~~G~l~ma~-~~~~~~~sqFfI~~~~~~~ld~~--------~~vfG~V~~G~~~l~~i~~~~~~~--  437 (456)
                      .+++|....++| .+|+||||| .+||+|||||||+++++++||++        |+|||+|++|||+|++|+++++++  
T Consensus        71 ~~~~E~~~~l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~  149 (167)
T 3s6m_A           71 PIANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKG  149 (167)
T ss_dssp             CBCCCGGGCCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC--
T ss_pred             ccCCcccccccC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCc
Confidence            455665556777 499999999 56999999999999999999998        999999999999999999999987  


Q ss_pred             --CCCCCcccEEEEEEEe
Q psy1031         438 --NDRPVDDVKILKTHVR  453 (456)
Q Consensus       438 --~~~P~~~i~I~~~~v~  453 (456)
                        +++|+++|+|.+|+|+
T Consensus       150 ~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          150 FHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             -CBTCBSSCCEEEEEEEC
T ss_pred             ccCCCcCCCeEEEEEEEC
Confidence              6899999999999985

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=5.1e-36  Score=268.44  Aligned_cols=87  Identities=31%  Similarity=0.512  Sum_probs=77.4

Q ss_pred             cccccccccccccccCcceEEeecc-CCCCCcceEEEEeCCCCCCCCC--------ccEEEEEEcCHHHHHHhhcCCCCC
Q psy1031         367 GKTFADEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPTQWLDGK--------HAIFGRIYSGMSVVKRIGLVETDK  437 (456)
Q Consensus       367 g~~~~~e~~~~~~h~~~G~l~ma~~-~~~~~~sqFfI~~~~~~~ld~~--------~~vfG~V~~G~~~l~~i~~~~~~~  437 (456)
                      |..++||....++|. +|+|||||. +||+++|||||+++++++||++        |+|||+|++|||+|++|++++++.
T Consensus        65 g~~~~dE~~~~l~~~-~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~  143 (164)
T 1lop_A           65 KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGR  143 (164)
T ss_dssp             CCCBCCCCCSSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred             CCccccccccccccC-ccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCC
Confidence            345667765567885 999999985 6999999999999999999998        999999999999999999999875


Q ss_pred             ----CCCCCcccEEEEEEEee
Q psy1031         438 ----NDRPVDDVKILKTHVRN  454 (456)
Q Consensus       438 ----~~~P~~~i~I~~~~v~~  454 (456)
                          +++|.++|+|.+|+|++
T Consensus       144 ~~~~~~~P~~~v~I~~~~v~~  164 (164)
T 1lop_A          144 SGMHQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             ETTEEEEESSCCEEEEEEECC
T ss_pred             ccccCCCcCCCeEEEEEEEeC
Confidence                47999999999999974

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.8e-35  Score=264.12  Aligned_cols=85  Identities=34%  Similarity=0.559  Sum_probs=75.4

Q ss_pred             cccccccccccccCcceEEeecc-CCCCCcceEEEEeCCCCCCCCC-----ccEEEEEEcCHHHHHHhhcCCCCC----C
Q psy1031         369 TFADEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPTQWLDGK-----HAIFGRIYSGMSVVKRIGLVETDK----N  438 (456)
Q Consensus       369 ~~~~e~~~~~~h~~~G~l~ma~~-~~~~~~sqFfI~~~~~~~ld~~-----~~vfG~V~~G~~~l~~i~~~~~~~----~  438 (456)
                      .+++|....++|. +|+|||||. +||+|||||||+++++++||++     |+|||+|++|||+|++|+++++++    +
T Consensus        72 ~~~dE~~~~l~~~-~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~  150 (166)
T 1v9t_A           72 PIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQ  150 (166)
T ss_dssp             CBCCCGGGSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEE
T ss_pred             cccccccccccCC-ceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccC
Confidence            3556655556665 999999997 5999999999999999999998     999999999999999999999876    4


Q ss_pred             CCCCcccEEEEEEEee
Q psy1031         439 DRPVDDVKILKTHVRN  454 (456)
Q Consensus       439 ~~P~~~i~I~~~~v~~  454 (456)
                      ++|.++|+|.+|+|++
T Consensus       151 ~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          151 NVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEESSCCBEEEEEECC
T ss_pred             CCcCCCeEEEEEEEeC
Confidence            7899999999999974

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=1e-33  Score=287.14  Aligned_cols=117  Identities=44%  Similarity=0.685  Sum_probs=102.8

Q ss_pred             cCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCC
Q psy1031         332 GEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL  410 (456)
Q Consensus       332 ~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~l  410 (456)
                      |+++.|||+++  ++++  ||||++ ++|+||+++||..|+||. +.++|+.+|+|||||.+||+||||||||++++++|
T Consensus        68 y~~~~fhrv~~--~f~~--q~Gd~~~~~g~g~~~~~~~~~~~e~-~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~l  142 (370)
T 1ihg_A           68 FKGCPFHRIIK--KFMI--QGGDFSNQNGTGGESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHL  142 (370)
T ss_dssp             CTTCBEEEEET--TTEE--EECCTTTSSSSCCCBTTBSCBCCCC-CCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGG
T ss_pred             eCCcEeEEEEC--CcEE--ECCCCCCCCCCCCCCCCCCCcCCCc-CCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCccc
Confidence            34444455444  4555  677777 778899999999999996 68999999999999999999999999999999999


Q ss_pred             CCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       411 d~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      |++|+|||+|++||++|++|++++++. ++|..+|+|.+|+++.
T Consensus       143 d~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~~~v~I~~~g~l~  185 (370)
T 1ihg_A          143 DGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELK  185 (370)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCEET-TEESSCEEEEEEEEEC
T ss_pred             CCCceEEEEEecCHHHHHHHHcCCCCC-CccceeEEEEEEEEec
Confidence            999999999999999999999999886 8999999999999985

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.96  E-value=1.4e-29  Score=250.64  Aligned_cols=83  Identities=24%  Similarity=0.381  Sum_probs=70.6

Q ss_pred             cccccccccccc----cccccccCcceEEeecc--CCCCCcceEEEEe-------CCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031         363 SSIYGKTFADEI----HEELKHTGAGILSMANS--GPDTNGSQFFITL-------APTQWLDGKHAIFGRIYSGMSVVKR  429 (456)
Q Consensus       363 ~~~~g~~~~~e~----~~~~~h~~~G~l~ma~~--~~~~~~sqFfI~~-------~~~~~ld~~~~vfG~V~~G~~~l~~  429 (456)
                      .++|+..+++|.    .+.++|+.+|+|||||+  +||+|||||||++       ++.++||++|+|||+|++|||||++
T Consensus       262 ~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdk  341 (369)
T 3rfy_A          262 TPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLAD  341 (369)
T ss_dssp             CSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGG
T ss_pred             CCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHH
Confidence            456777777763    35788888999999998  7999999999999       4689999999999999999999999


Q ss_pred             hhcCCCCCCCCCCcccEEEEEEEeecC
Q psy1031         430 IGLVETDKNDRPVDDVKILKTHVRNTL  456 (456)
Q Consensus       430 i~~~~~~~~~~P~~~i~I~~~~v~~~~  456 (456)
                      |++.+           +|.+++|++++
T Consensus       342 I~~GD-----------~I~sv~I~~g~  357 (369)
T 3rfy_A          342 LKVGD-----------VIESIQVVSGL  357 (369)
T ss_dssp             CCTTC-----------EEEEEEEEECG
T ss_pred             HhCCC-----------ceEEEEEecCC
Confidence            98742           48888887764

>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...

Probab=91.67  E-value=0.12  Score=48.46  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             eecceEEEEEecCCCCchhhhhHHHhhhcc------cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCc
Q psy1031          58 HNMGEIIVELYWKHAPNTCRNFAELCRRNY------YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENL  131 (456)
Q Consensus        58 t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~------y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~  131 (456)
                      |+.|...+..-+-..-.+...|..+...-+      +.+.....++||+++.+.      ........+..+.++..++|
T Consensus       155 t~~g~y~~~~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~------~~eeh~~~l~~v~~~L~~~g  228 (255)
T 3fsi_A          155 GISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT------SELDCQQGTRALLQTLGNLG  228 (255)
T ss_dssp             CCSSEEEESBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEES------SHHHHHHHHHHHHHHHHHHT
T ss_pred             CccceEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeC------CHHHHHHHHHHHHHHHHHCC
Confidence            566766655555555445555544332211      234466778899888742      23345667888999999999


Q ss_pred             eeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeeeeeeEEEecCC
Q psy1031         132 MVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQYN  178 (456)
Q Consensus       132 L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~kyLGV~ld~~  178 (456)
                      |.+|++||++..                      ++++|||..++++
T Consensus       229 l~l~~~Kc~f~~----------------------~~~~fLG~~i~~~  253 (255)
T 3fsi_A          229 YRASAKKAQICQ----------------------KQVKYLGYLLKEG  253 (255)
T ss_dssp             CCBCTTTCEEEE----------------------SEEEETTEEEETT
T ss_pred             eEECHHHhcccC----------------------CceEEEEEEEeCC
Confidence            999999998542                      4678999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	1e-35
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	9e-11
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	4e-31
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	4e-12
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-27
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-05
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	8e-27
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	3e-08
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	2e-26
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	3e-08
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	1e-25
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	5e-06
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	7e-25
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	7e-06
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	8e-24
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-07
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	9e-24
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-06
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	9e-24
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	3e-09
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	1e-22
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-07
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-22
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	2e-07
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-22
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	9e-07
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	9e-22
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	6e-09
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-21
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	3e-04
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-21
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-09
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	6e-21
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	7e-07
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-18
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-08
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	1e-17
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	1e-06
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	9e-17
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	1e-04
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-15
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-10
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-14
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-07

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-35
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64  GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           GKH IFGR+  G+ +V R+G+VET+  DRPVDDVKI+K + 
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYP 164

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 9e-11
 Identities = 35/46 (76%), Positives = 40/46 (86%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA 104
           +MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ 
Sbjct: 19  SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG 64

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 4e-31
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG GG S +GK F DE    L HTG GILSMANSGP++N SQFFIT     +LD
Sbjct: 53  GGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD 112

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
            KH IFGR+  G  V+  +  VE+D K DRP ++++I  T V
Sbjct: 113 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 154

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 4e-12
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N G++ +EL+    P TC NF  LC+++YY+G  FHR IR+F+IQ
Sbjct: 8   NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ 52

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 62/99 (62%), Positives = 79/99 (79%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTG+GG SIYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP   LD
Sbjct: 69  GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 128

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
           GKH IF R+   M+ ++ I  V+T   ++P+ D+KIL+T
Sbjct: 129 GKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 167

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N+G+  VELYW H+P TC NF  LC   +Y+   FHR+I +F+IQ
Sbjct: 24  NLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQ 68

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 8e-27
 Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDPTGTGRGG+SI+GK F DE  E LKH   G++SMAN+GP+TNGSQFFIT      LD
Sbjct: 53  TGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
            K+ +FG++  G+  +  +  +  + K  RP++DV I    +
Sbjct: 113 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 54  SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           S+  H ++G+I +E++ +  P TC NF  LC  NYYNG  FHR I+ FM+Q
Sbjct: 2   SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQ 52

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  102 bits (255), Expect = 2e-26
 Identities = 53/113 (46%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 340 MEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQ 399
             ++        G    G G GG SIYG  FADE + +LKH   G+LSMAN+GP+TNGSQ
Sbjct: 51  FHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQ 109

Query: 400 FFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
           FFIT   T WLDGKH +FG +  GM+VVK I   E   + +P   ++I K  V
Sbjct: 110 FFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCGV 161

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQ 103
           +G I  +L+    P T  NF  LC   +   Y G  FHR+I DFM+Q
Sbjct: 15  LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 4/143 (2%)

Query: 307 FNLKVPL--RKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSS 364
           ++  VP      R+         K+         +  +I  +     G    G G GG S
Sbjct: 25  YDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGES 84

Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
           IYG+ F DE  +E KHTG G+LSMAN+GP+TNGSQFF+    T+WLDGKH +FGR+  G+
Sbjct: 85  IYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143

Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
            VVK +    +  + +PV D  I
Sbjct: 144 DVVKAVESNGSQ-SGKPVKDCMI 165

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRN----------YYNGIKFHRIIRDFMIQ 103
             G I++ELY    P T  NF  LC             ++ G KFHRII +FMIQ
Sbjct: 16  ASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQ 70

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 98.4 bits (244), Expect = 7e-25
 Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 307 FNLKVPLRKTRSCDMFVLEK-NKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSI 365
           F+   P        +   EK                +I        G    G G GG SI
Sbjct: 25  FSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESI 84

Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
           YG++F D  +  +KH   G+LSMAN+GP+TN SQFFITL P  WLDGKH +FG++  GM+
Sbjct: 85  YGRSFTD-ENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143

Query: 426 VVKRIGLVETDKNDRPVDDVKI 447
           VV+ +      K+      V I
Sbjct: 144 VVREMEKEGA-KSGYVKRSVVI 164

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELC---------RRNYYNGIKFHRIIRDFMIQ 103
           N G II EL+    P TC NF  LC         +  +Y    FHRII  FM Q
Sbjct: 16  NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQ 69

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 95.0 bits (235), Expect = 8e-24
 Identities = 51/101 (50%), Positives = 67/101 (66%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
            GDP+G G GG SI+G  F DE  + L H+   ++SMAN GP+TNGSQFFIT  P  WLD
Sbjct: 54  TGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD 113

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
            KH +FG++  G  +V  I  V TDK D+P++D+KIL   +
Sbjct: 114 FKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 154

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 53  RSLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGG 109
           +S + +  MG+I + L++K    T +NF+      YYN   FHR+I+ FM+Q     G
Sbjct: 2   KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSG 59

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 95.7 bits (237), Expect = 9e-24
 Identities = 62/146 (42%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIY 366
           F   VP        +   EK     G          I + +  G G      G GG SIY
Sbjct: 29  FGNVVPKTVENFVALATGEKGYGYKG----SIFHRVIKDFMIQG-GDFTARDGTGGMSIY 83

Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
           G+TF D  + +LKH G G +SMAN+GPDTNGSQFFITL    WLDGKH +FG++  GM+V
Sbjct: 84  GETFPD-ENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTV 142

Query: 427 VKRIGLVETDKNDRPVDDVKILKTHV 452
           V  I L  TD +DRP+ D  I+ +  
Sbjct: 143 VHSIELQATDGHDRPLTDCTIVNSGK 168

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGG 109
           ++G I++ L+    P T  NF  L    +   Y G  FHR+I+DFMIQ        G GG
Sbjct: 20  DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGG 79

Query: 110 ASNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKH 149
            S   +   D    L  +    + + N       S +    
Sbjct: 80  MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 95.7 bits (237), Expect = 9e-24
 Identities = 61/136 (44%), Positives = 77/136 (56%), Gaps = 2/136 (1%)

Query: 317 RSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHE 376
           ++   F+ E  K   GE  P  +  ++        G    G G GG SIYG+ FAD  + 
Sbjct: 34  KTATNFI-ELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFAD-ENF 91

Query: 377 ELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD 436
           +LKH GAG LSMAN+G DTNGSQFFIT   T WLDG+H +FG+I  GM VV++I   E  
Sbjct: 92  KLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKL 151

Query: 437 KNDRPVDDVKILKTHV 452
             DRP  DV I  +  
Sbjct: 152 PGDRPKQDVIIAASGH 167

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRR---NYYNGIKFHRIIRDFMIQ 103
           +G I++ L+ K  P T  NF EL ++     Y G KFHR+I DFMIQ
Sbjct: 20  IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQ 66

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.0 bits (230), Expect = 1e-22
 Identities = 49/129 (37%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 319 CDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEEL 378
           C         T            +I        G      G GG SIYG+ F DE     
Sbjct: 51  CTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH-Y 109

Query: 379 KHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN 438
           KH   G+LSMAN+G +TNGSQFFIT  PT  LDGKH +FG++  GM V K +  VE    
Sbjct: 110 KHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-G 168

Query: 439 DRPVDDVKI 447
           ++P     I
Sbjct: 169 EKPAKLCVI 177

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA--- 104
            +G I++EL+    P T  NF  LC           +  ++ G  FHRII+ FMIQ    
Sbjct: 27  RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 86

Query: 105 ---MGVGGASNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKH 149
               G GG S   +  +D   +        L + N       S +    
Sbjct: 87  SNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 92.2 bits (228), Expect = 1e-22
 Identities = 53/121 (43%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 330 NIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA 389
             GE        +I  +     G    G G GG SIYG  FAD  +   KH   GILSMA
Sbjct: 46  PAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFAD-ENFSRKHDKKGILSMA 104

Query: 390 NSGPDTNGSQFFITLAPTQWLDGKHAIFGRI--YSGMSVVKRIGLVETD-KNDRPVDDVK 446
           N+GP+TNGSQFFIT A T WLDGKH +FG +      SVVK I  + +   + R     K
Sbjct: 105 NAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPK 164

Query: 447 I 447
           I
Sbjct: 165 I 165

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRN---YYNGIKFHRIIRDFMIQ 103
            +G I+  L+ K  P T +NF ELC+R     Y    FHRII +FMIQ
Sbjct: 19  KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 66

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           G      G GG SIYG  F DE  +       G +SMAN+GP++NGSQFF+T APT WLD
Sbjct: 67  GDFTNFDGTGGKSIYGTRFDDENLK--IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLD 124

Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           G+H +FG++  GM VVK++   +T  ND+P   VKI
Sbjct: 125 GRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 46.4 bits (109), Expect = 9e-07
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQ 103
            +G +++ L+    P T  NF +L        Y G  FHR+IR+FMIQ
Sbjct: 18  PVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQ 65

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 89.9 bits (222), Expect = 9e-22
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 319 CDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEEL 378
           C         +            ++  +     G    G G GG SIYG    D+    +
Sbjct: 40  CTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG-MFDDEEFVM 98

Query: 379 KHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN 438
           KH    ++SMAN GP+TNGSQFFIT  P   L+  H +FG++ SG  VV +I  ++T+  
Sbjct: 99  KHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK 158

Query: 439 DRPVDDVKIL 448
           +RP+ DV IL
Sbjct: 159 NRPLADVVIL 168

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQ 103
            G I++ELY   AP TC NF  LC           +  +Y G  FHR+I++FMIQ
Sbjct: 17  AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQ 71

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 1e-21
 Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIY 366
           F   VP            E  K  +          ++        G    G G G +SIY
Sbjct: 28  FADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIY 87

Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
              FADE  +       G+LSMANSGP TNG QFFIT +   WLDGKH +FG+I  G+ V
Sbjct: 88  RGPFADENFKLRHS-APGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLV 146

Query: 427 VKRIGLVETDKNDRPVDDVKILK 449
           +++I  V T  N++P   V I +
Sbjct: 147 MRKIENVPTGPNNKPKLPVVISQ 169

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQ 103
            +G + +EL+    P T  NF + C   +        Y G  FHR+I+DFMIQ
Sbjct: 19  EVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQ 71

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 87.6 bits (216), Expect = 6e-21
 Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           GGDPTGTGRGG       FADE H EL+     +L+MAN+GP TNGSQFFIT+  T  L+
Sbjct: 71  GGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 127

Query: 412 GKHAIFGRIYS--GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
            +H IFG +       VV+ I    TD NDRP D V I    +
Sbjct: 128 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 170

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 15/67 (22%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCR---------------RNYYNGIKFHRIIRDFMIQ 103
           N G+I + L+  HAP T  NF  L +                 +Y+G  FHR+I+ FMIQ
Sbjct: 11  NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 70

Query: 104 AMGVGGA 110
                G 
Sbjct: 71  GGDPTGT 77

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 6e-21
 Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 1/100 (1%)

Query: 355 PTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKH 414
           PTGTG GG SI+G  F DE H  L+H     LSMAN+G +TNGSQFFIT+ PT WLD KH
Sbjct: 65  PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKH 124

Query: 415 AIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
            +FGR+  GM VV+RI  V+ + K D+P +DV I+   V+
Sbjct: 125 TVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 164

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 22/45 (48%), Positives = 27/45 (60%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           +MG+I  +L+    P T  NF    R  YYNG  FHRII+ FMIQ
Sbjct: 17  SMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQ 61

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 1e-18
 Identities = 48/109 (44%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 339 RMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGS 398
              ++       AG      G GG SIYG  F D  +  LKH G G+LSMAN+GP+TNGS
Sbjct: 51  TFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGS 109

Query: 399 QFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
           QFFI    T WLDGKH +FG +  GM VVK+I    +  + R    + I
Sbjct: 110 QFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVI 157

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
           +G +++EL     P T  NF  LC   +   Y G  FHR+I  FM QA       G GG 
Sbjct: 16  LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75

Query: 111 SNVN-QLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTN 147
           S    +  D    L       L + N       S +  
Sbjct: 76  SIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 113

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 9/142 (6%)

Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIG-EFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSI 365
            +  VP+       +   EK     G  F  I           +         G GG SI
Sbjct: 23  RSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTN------HNGTGGKSI 76

Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
           YGK F DE     KHTG G+LSMANSGP+TNGSQFF+T   T WLDGKH +FG +  G+ 
Sbjct: 77  YGKKFDDENFIL-KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLD 135

Query: 426 VVKRIGLVETDKNDRPVDDVKI 447
           V+++I   +  K+ +P   V I
Sbjct: 136 VLRQIE-AQGSKDGKPKQKVII 156

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQL 116
            G I + L     P T  NF  LC   +   + G  FHRII  FM Q       +     
Sbjct: 15  AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 74

Query: 117 QDVIQNLHCWCNENLM 132
               +           
Sbjct: 75  SIYGKKFDDENFILKH 90

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 76.1 bits (186), Expect = 9e-17
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
           G      G G  SIYG+ F D+ + ++KH   G+LSMANSGP+TNG QFFIT    +WLD
Sbjct: 83  GDFINHNGSGSLSIYGEKF-DDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD 141

Query: 412 GKHAIFGRIYSG--MSVVKRIGLVETD-KNDRPVDDVKILK 449
           GK+ +FGRI     + ++K+I  V       +P   + +++
Sbjct: 142 GKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE 182

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 60  MGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQ 103
           +G+   EL+    P T  NF + C   Y        Y    FHR+I++FMIQ
Sbjct: 30  LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ 81

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 364 SIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL--------DGKHA 415
               +   +E +  LK+T   +       P +  +QFFI +    +L           + 
Sbjct: 62  KATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121

Query: 416 IFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKTHV 452
           +F  +  GM  V +I  V T ++    D P +DV I    V
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 55.3 bits (132), Expect = 8e-10
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           N G+I+++ +   AP T +NF + CR  +YN   FHR+I  FMIQ
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ 51

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (163), Expect = 7e-14
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 339 RMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGS 398
                   I          T +           +E    L++T   I     +  D+  S
Sbjct: 42  NNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATS 101

Query: 399 QFFITLAPTQWLD-----GKHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILK 449
           QFFI +A   +LD       +A+FG++  GM V  +I  V T       + P   V IL 
Sbjct: 102 QFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 161

Query: 450 THV 452
             V
Sbjct: 162 ATV 164

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 59  NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
           + G I +EL  + AP + +NF +     +YN   FHR+I  FMIQ
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.97
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.97
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.97
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.97
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.97
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	99.97
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	99.97
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.97
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.97
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	99.97
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	99.97
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.97
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.97
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.97
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.96
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.96
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	91.74
d1ztwa1	255	MMLV reverse transcriptase {Moloney murine leukemi	80.31

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=256.63  Aligned_cols=88  Identities=40%  Similarity=0.687  Sum_probs=79.6

Q ss_pred             ccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCC-CCCCCcccE
Q psy1031         368 KTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK-NDRPVDDVK  446 (456)
Q Consensus       368 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~-~~~P~~~i~  446 (456)
                      ..+++|....++|.++|+||||+.+|++++|||||++++.|+||++|+|||||++|||+|++|+++++++ +++|..+|+
T Consensus        69 ~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~  148 (159)
T d2ok3a1          69 KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVH  148 (159)
T ss_dssp             SCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCB
T ss_pred             CccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcE
Confidence            3445555566788889999999999999999999999999999999999999999999999999999876 578999999


Q ss_pred             EEEEEEeec
Q psy1031         447 ILKTHVRNT  455 (456)
Q Consensus       447 I~~~~v~~~  455 (456)
                      |.+|+|+.|
T Consensus       149 I~~v~i~~~  157 (159)
T d2ok3a1         149 IKDITIHAN  157 (159)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            999999875

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=4e-34  Score=252.78  Aligned_cols=85  Identities=48%  Similarity=0.860  Sum_probs=78.4

Q ss_pred             ccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEE
Q psy1031         368 KTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI  447 (456)
Q Consensus       368 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I  447 (456)
                      ..+++|....+.|.++|+++|++.+||+++|||||++++.++||++|+|||+|++|||+|++|++++++++++|+++|+|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I  149 (155)
T d2fu0a1          70 NEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKI  149 (155)
T ss_dssp             SCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBE
T ss_pred             CccccccccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEE
Confidence            34555555678888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEE
Q psy1031         448 LKTHV  452 (456)
Q Consensus       448 ~~~~v  452 (456)
                      .+|+|
T Consensus       150 ~~v~i  154 (155)
T d2fu0a1         150 LNIKI  154 (155)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99987

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=253.38  Aligned_cols=89  Identities=51%  Similarity=0.823  Sum_probs=80.3

Q ss_pred             cccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCC-CCCCCccc
Q psy1031         367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK-NDRPVDDV  445 (456)
Q Consensus       367 g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~-~~~P~~~i  445 (456)
                      +..+++|....++|..+|+||||++++++++|||||+++++++||++|+|||+|++|||+|++|+++++++ +++|.++|
T Consensus        68 ~~~~~~E~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v  147 (178)
T d1zkca1          68 GKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEI  147 (178)
T ss_dssp             BSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCC
T ss_pred             CCCcCCccccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCe
Confidence            34555665566888889999999999999999999999999999999999999999999999999999874 68999999


Q ss_pred             EEEEEEEeec
Q psy1031         446 KILKTHVRNT  455 (456)
Q Consensus       446 ~I~~~~v~~~  455 (456)
                      +|.+|+|+.|
T Consensus       148 ~I~~~~Il~~  157 (178)
T d1zkca1         148 RIDATTVFVD  157 (178)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEcC
Confidence            9999999865

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.9e-33  Score=249.04  Aligned_cols=82  Identities=59%  Similarity=0.952  Sum_probs=75.3

Q ss_pred             ccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEE
Q psy1031         370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILK  449 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~  449 (456)
                      +++|....++|.++|++||++++|++++|||||++++.++||++|+|||+|++|||+|++|++++++++++|..+|+|.+
T Consensus        87 ~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~  166 (169)
T d2b71a1          87 FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  166 (169)
T ss_dssp             BCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             cccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            33444456788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q psy1031         450 TH  451 (456)
Q Consensus       450 ~~  451 (456)
                      +.
T Consensus       167 ~~  168 (169)
T d2b71a1         167 TS  168 (169)
T ss_dssp             EE
T ss_pred             cc
Confidence            85

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=249.57  Aligned_cols=85  Identities=69%  Similarity=1.188  Sum_probs=77.1

Q ss_pred             ccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEE
Q psy1031         368 KTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI  447 (456)
Q Consensus       368 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I  447 (456)
                      ..+++|.++.+.|.++|+|||++++||+++|||||++++.++||++|+|||+|++|||+|++|++++++++++|.++|+|
T Consensus        80 ~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I  159 (166)
T d1xwna1          80 KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI  159 (166)
T ss_dssp             SCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCE
T ss_pred             CccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEE
Confidence            34455555567788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEE
Q psy1031         448 LKTHV  452 (456)
Q Consensus       448 ~~~~v  452 (456)
                      .++..
T Consensus       160 ~~a~~  164 (166)
T d1xwna1         160 IKAYP  164 (166)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99864

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=99.97  E-value=2e-31  Score=239.29  Aligned_cols=92  Identities=50%  Similarity=0.871  Sum_probs=79.2

Q ss_pred             CCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCC
Q psy1031         361 GGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDR  440 (456)
Q Consensus       361 g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~  440 (456)
                      ++..+++..+++|. ....|..+|+||||+.+|++++|||||+++++++||++|+|||+|++|||+|++|++.++ ++++
T Consensus        81 ~~~~~~~~~~~~e~-~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~  158 (172)
T d2igva1          81 GGESIYGEKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGK  158 (172)
T ss_dssp             CCCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSC
T ss_pred             CCcccCCCccCccc-cccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCC-CCCC
Confidence            33444445566665 445677799999999999999999999999999999999999999999999999998776 4789


Q ss_pred             CCcccEEEEEEEee
Q psy1031         441 PVDDVKILKTHVRN  454 (456)
Q Consensus       441 P~~~i~I~~~~v~~  454 (456)
                      |+++|+|.+|++++
T Consensus       159 P~~~i~I~~cG~l~  172 (172)
T d2igva1         159 PVKDCMIADCGQLK  172 (172)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCeEEEeccccC
Confidence            99999999999985

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=236.95  Aligned_cols=78  Identities=47%  Similarity=0.799  Sum_probs=72.2

Q ss_pred             ccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031         376 EELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN  454 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~  454 (456)
                      +...|..+|+||||+.++++++|||||+++++++||++|+|||+|++|||+|++|++++++ +++|.++|+|.+|+++.
T Consensus        87 ~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~-~~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1          87 FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQLS  164 (164)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCCSSCEEEEEEEECC
T ss_pred             cccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCC-CCCCCCCEEEEeCeecC
Confidence            3455667999999999999999999999999999999999999999999999999999876 68999999999999874

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=235.21  Aligned_cols=75  Identities=51%  Similarity=0.865  Sum_probs=69.9

Q ss_pred             ccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEE
Q psy1031         376 EELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTH  451 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~  451 (456)
                      +...|..+|+++||+.+|++++|||||+++++++||++|+|||||++|||+|++|+...+ ++++|+++|+|++|+
T Consensus        86 ~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~-~~~~P~~~i~I~~CG  160 (161)
T d2r99a1          86 FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCG  160 (161)
T ss_dssp             CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEE
T ss_pred             cccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCC-CCCcCCCCEEEEeCC
Confidence            566788899999999999999999999999999999999999999999999999987654 589999999999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.97  E-value=2.2e-31  Score=239.37  Aligned_cols=77  Identities=48%  Similarity=0.818  Sum_probs=72.2

Q ss_pred             cccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         377 ELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       377 ~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ...|..+|+|+||+++|++++|||||++++.++||++|+|||+|++|||+|++|++++++++++|+++|+|.+|+-+
T Consensus        97 ~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (173)
T d1qoia_          97 KLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  173 (173)
T ss_dssp             CSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             ccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence            34466699999999999999999999999999999999999999999999999999999999999999999999854

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=3e-31  Score=238.05  Aligned_cols=116  Identities=46%  Similarity=0.726  Sum_probs=103.3

Q ss_pred             cccCCccceeeeeccceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCC
Q psy1031         330 NIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQW  409 (456)
Q Consensus       330 ~~~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~  409 (456)
                      .+|+++.+||+.+  ++++  ||||+.+++.++.   ...+++|..+.++|.++|+++|++.+||+++|||||++++.|+
T Consensus        53 ~~Y~g~~~~rv~~--~~~i--q~g~~~~~~~~~~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~  125 (171)
T d1w74a_          53 PFYDGAVFHRVIQ--GFMI--QGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH  125 (171)
T ss_dssp             CSSTTEEEEEEET--TTEE--EECCTTSSSSCCS---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGG
T ss_pred             ceECCeecccccC--Ccee--EcccccCCCCCCc---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCc
Confidence            4566777888776  7777  9999987777665   3467777778899999999999999999999999999999999


Q ss_pred             CCCCccEEEEEE--cCHHHHHHhhcCCCCCCCCCCcccEEEEEEE
Q psy1031         410 LDGKHAIFGRIY--SGMSVVKRIGLVETDKNDRPVDDVKILKTHV  452 (456)
Q Consensus       410 ld~~~~vfG~V~--~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v  452 (456)
                      ||++|+|||||+  ||||+|++|++++++++++|..+|+|.+|+|
T Consensus       126 ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~~v~i  170 (171)
T d1w74a_         126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI  170 (171)
T ss_dssp             GTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEE
T ss_pred             cccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEEEEEE
Confidence            999999999999  5999999999999999999999999999987

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=4e-31  Score=235.94  Aligned_cols=74  Identities=50%  Similarity=0.856  Sum_probs=70.9

Q ss_pred             ccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         380 HTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       380 h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      |..+|+|+||+.+||+++|||||+++++++||++|+|||+|++|||+|++|++++++.+++|.++|+|.+|+|+
T Consensus        93 ~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_          93 KHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL  166 (166)
T ss_dssp             CCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             cccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence            33589999999999999999999999999999999999999999999999999999999999999999999986

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.97  E-value=7.4e-31  Score=235.13  Aligned_cols=83  Identities=45%  Similarity=0.743  Sum_probs=74.6

Q ss_pred             cccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031         369 TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL  448 (456)
Q Consensus       369 ~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~  448 (456)
                      .++++. +.+.|+.+|+||||+.+|++++|||||+++++++||++|+|||+|++|||+|++|++.+++ +++|.++|+|+
T Consensus        88 ~~~~~~-~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~~~i~I~  165 (170)
T d1qnga_          88 SFTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKRSVVIT  165 (170)
T ss_dssp             CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEE
T ss_pred             cccccc-ccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCCccCEEEE
Confidence            344443 4567888999999999999999999999999999999999999999999999999998876 68999999999


Q ss_pred             EEEEe
Q psy1031         449 KTHVR  453 (456)
Q Consensus       449 ~~~v~  453 (456)
                      +|+++
T Consensus       166 ~CG~l  170 (170)
T d1qnga_         166 DCGEL  170 (170)
T ss_dssp             EEEEC
T ss_pred             eeEcC
Confidence            99975

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-31  Score=233.50  Aligned_cols=78  Identities=53%  Similarity=0.912  Sum_probs=73.2

Q ss_pred             cccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCC-CCCCCcccEEEEEEE
Q psy1031         375 HEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK-NDRPVDDVKILKTHV  452 (456)
Q Consensus       375 ~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~-~~~P~~~i~I~~~~v  452 (456)
                      .+.+.|.+.|+++|++.++++++|||||++++.++||++|+|||+|++|||+|++|+++++++ +++|.++|+|.+|+|
T Consensus        85 ~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          85 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             ccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            356778889999999999999999999999999999999999999999999999999999985 589999999999987

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.97  E-value=1e-30  Score=235.22  Aligned_cols=78  Identities=44%  Similarity=0.710  Sum_probs=74.6

Q ss_pred             ccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031         376 EELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR  453 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~  453 (456)
                      ....|..+|+++|++.+|++++|||||++++.|+||++|+|||+|++|||+|++|++++++.+++|.++|+|.+|+++
T Consensus        96 ~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (174)
T d1a33a_          96 FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  173 (174)
T ss_dssp             SCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred             cccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence            567788899999999999999999999999999999999999999999999999999999999999999999999875

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=99.97  E-value=1.2e-30  Score=236.18  Aligned_cols=85  Identities=55%  Similarity=0.918  Sum_probs=77.2

Q ss_pred             cccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031         369 TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL  448 (456)
Q Consensus       369 ~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~  448 (456)
                      .++++. +...|..+|+||||+.++++++|||||++++.++||++|+|||+|++|||+|++|++.+++.+++|.++|+|.
T Consensus        86 ~~~~~~-~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~  164 (182)
T d2rmca_          86 TFPDEN-FKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIV  164 (182)
T ss_dssp             CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEE
T ss_pred             cccccc-cccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEE
Confidence            344443 4455667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEee
Q psy1031         449 KTHVRN  454 (456)
Q Consensus       449 ~~~v~~  454 (456)
                      +|++++
T Consensus       165 ~~g~l~  170 (182)
T d2rmca_         165 NSGKID  170 (182)
T ss_dssp             EEEEEE
T ss_pred             EeeEEe
Confidence            999985

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=99.97  E-value=1.2e-30  Score=231.79  Aligned_cols=81  Identities=53%  Similarity=0.856  Sum_probs=73.3

Q ss_pred             ccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEE
Q psy1031         370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILK  449 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~  449 (456)
                      +.+|. +.+.|..+|+||||+.+||+++|||||++++.++||++|+|||||++|||+|++|+...+ ++++|.++|+|.+
T Consensus        81 ~~~e~-~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~-~~~~P~~~i~I~~  158 (162)
T d2cfea1          81 FADEN-FQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSRIEIAK  158 (162)
T ss_dssp             BCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEEEE
T ss_pred             ccccc-CCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCC-CCCCCCCCeEEEe
Confidence            44453 567888899999999999999999999999999999999999999999999999987654 5899999999999


Q ss_pred             EEE
Q psy1031         450 THV  452 (456)
Q Consensus       450 ~~v  452 (456)
                      |+|
T Consensus       159 cgv  161 (162)
T d2cfea1         159 CGV  161 (162)
T ss_dssp             EEE
T ss_pred             eEc
Confidence            998

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.3e-30  Score=236.85  Aligned_cols=117  Identities=44%  Similarity=0.704  Sum_probs=94.1

Q ss_pred             CCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCC
Q psy1031         333 EFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD  411 (456)
Q Consensus       333 ~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld  411 (456)
                      +++.|+|+.+  ++++  |+||.. ..+.++...++..+.+|. ....|..+|+|+|++.+|++++|||||+++++++||
T Consensus        68 ~g~~f~rv~~--~~~i--~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LD  142 (195)
T d1ihga2          68 KGCPFHRIIK--KFMI--QGGDFSNQNGTGGESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLD  142 (195)
T ss_dssp             TTCBEEEEET--TTEE--EECCTTTSSSSCCCBTTBSCBCCCC-CCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCceeeEEEc--Ccee--ecCCccCCCCCCCccCCCCcccccc-cCcccCcceEEeeeecCCCCCCceeEeeccCCcccC
Confidence            3444444433  4444  555544 344445555566677775 567798999999999999999999999999999999


Q ss_pred             CCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031         412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT  455 (456)
Q Consensus       412 ~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~  455 (456)
                      ++|+|||||++|||+|++|++++++ +++|.++|+|.+|+++.+
T Consensus       143 g~ytVFG~Vv~Gmdvl~~I~~~~t~-~~~P~~~i~I~~cG~l~~  185 (195)
T d1ihga2         143 GKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVIAECGELKE  185 (195)
T ss_dssp             TTSCEEEEEEECHHHHHHHHTSCEE-TTEESSCEEEEEEEEECT
T ss_pred             CcceEEEEEecCHHHHHHHHcCCCC-CCCcCCCeEEEECcccCC
Confidence            9999999999999999999998886 689999999999999864

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.97  E-value=2.2e-30  Score=234.50  Aligned_cols=84  Identities=56%  Similarity=0.841  Sum_probs=76.2

Q ss_pred             ccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEE
Q psy1031         370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILK  449 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~  449 (456)
                      +.++. +...|..+|+++||+.++++++|||||++++.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus        86 ~~~~~-~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~  164 (182)
T d1h0pa_          86 FADEN-FKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAA  164 (182)
T ss_dssp             BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEE
T ss_pred             cCccc-ccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEE
Confidence            33443 34556679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEee
Q psy1031         450 THVRN  454 (456)
Q Consensus       450 ~~v~~  454 (456)
                      |+++.
T Consensus       165 cG~l~  169 (182)
T d1h0pa_         165 SGHIA  169 (182)
T ss_dssp             EEEEE
T ss_pred             CCeEe
Confidence            98865

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2e-30  Score=231.41  Aligned_cols=84  Identities=35%  Similarity=0.553  Sum_probs=72.2

Q ss_pred             ccccccccccccCcceEEeecc-CCCCCcceEEEEeCCCCCCCC-----CccEEEEEEcCHHHHHHhhcCCCCCC----C
Q psy1031         370 FADEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPTQWLDG-----KHAIFGRIYSGMSVVKRIGLVETDKN----D  439 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~-~~~~~~sqFfI~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~~----~  439 (456)
                      +++|....++|. +|.|+|++. ++++++|||||++++.++||+     +|+|||+|++|||+|++|+++++++.    +
T Consensus        73 ~~~e~~~~~~~~-rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~  151 (166)
T d1v9ta_          73 IKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQN  151 (166)
T ss_dssp             BCCCGGGSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEE
T ss_pred             cccccccccccc-CCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCC
Confidence            445554566676 899999985 499999999999999998886     48999999999999999999988764    4


Q ss_pred             CCCcccEEEEEEEee
Q psy1031         440 RPVDDVKILKTHVRN  454 (456)
Q Consensus       440 ~P~~~i~I~~~~v~~  454 (456)
                      +|+++|+|.+|+|+.
T Consensus       152 ~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         152 VPSKPVVILSATVLP  166 (166)
T ss_dssp             EESSCCBEEEEEECC
T ss_pred             ccCCCeEEEEEEEcC
Confidence            899999999999973

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=3.4e-30  Score=234.01  Aligned_cols=78  Identities=41%  Similarity=0.705  Sum_probs=72.8

Q ss_pred             ccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcC--HHHHHHhhcCCCCC-CCCCCcccEEEEEEE
Q psy1031         376 EELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSG--MSVVKRIGLVETDK-NDRPVDDVKILKTHV  452 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G--~~~l~~i~~~~~~~-~~~P~~~i~I~~~~v  452 (456)
                      ....|..+|+++|++.+|++++|||||+++++++||++|+|||+|++|  ||+|++|+.+++++ +++|.++|+|.+|+.
T Consensus       106 ~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~CGe  185 (186)
T d1z81a1         106 FDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGE  185 (186)
T ss_dssp             CCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEE
T ss_pred             cccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEeCCc
Confidence            456688899999999999999999999999999999999999999998  99999999999875 689999999999997


Q ss_pred             e
Q psy1031         453 R  453 (456)
Q Consensus       453 ~  453 (456)
                      +
T Consensus       186 l  186 (186)
T d1z81a1         186 L  186 (186)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.9e-30  Score=229.86  Aligned_cols=84  Identities=30%  Similarity=0.462  Sum_probs=72.2

Q ss_pred             ccccccccccccCcceEEeecc-CCCCCcceEEEEeCCC--------CCCCCCccEEEEEEcCHHHHHHhhcCCCCCCC-
Q psy1031         370 FADEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPT--------QWLDGKHAIFGRIYSGMSVVKRIGLVETDKND-  439 (456)
Q Consensus       370 ~~~e~~~~~~h~~~G~l~ma~~-~~~~~~sqFfI~~~~~--------~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~-  439 (456)
                      +++|....++|. +|.|+|++. +|++++|||||++++.        ++||++|+|||+|++|||+|++|+++++++.+ 
T Consensus        68 ~~~e~~~~~~h~-~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~  146 (164)
T d1lopa_          68 IKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGM  146 (164)
T ss_dssp             BCCCCCSSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETT
T ss_pred             ccccccccccce-eeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCC
Confidence            344444567786 899999975 5999999999999865        78899999999999999999999999987654 


Q ss_pred             ---CCCcccEEEEEEEee
Q psy1031         440 ---RPVDDVKILKTHVRN  454 (456)
Q Consensus       440 ---~P~~~i~I~~~~v~~  454 (456)
                         +|+++|+|.+++|.+
T Consensus       147 ~~~~P~~~v~I~~v~I~e  164 (164)
T d1lopa_         147 HQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             EEEEESSCCEEEEEEECC
T ss_pred             cCCCcCCCeEEEEEEEeC
Confidence               899999999999874

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.96  E-value=1.1e-29  Score=227.45  Aligned_cols=78  Identities=49%  Similarity=0.702  Sum_probs=61.5

Q ss_pred             ccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEc--CHHHHHHhhcCCCCCC-CCCCcccEEEEEEE
Q psy1031         376 EELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS--GMSVVKRIGLVETDKN-DRPVDDVKILKTHV  452 (456)
Q Consensus       376 ~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~--G~~~l~~i~~~~~~~~-~~P~~~i~I~~~~v  452 (456)
                      ..+.|..+|+||||+.+|++++|||||++++.++||++|+|||+|++  |||+|++|+++++++. .+|..+|+|.+|+.
T Consensus        91 ~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGe  170 (171)
T d2c3ba1          91 FSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE  170 (171)
T ss_dssp             -CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEE
T ss_pred             ccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCcc
Confidence            34567679999999999999999999999999999999999999995  9999999999998763 47999999999987


Q ss_pred             e
Q psy1031         453 R  453 (456)
Q Consensus       453 ~  453 (456)
                      +
T Consensus       171 l  171 (171)
T d2c3ba1         171 L  171 (171)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.74  E-value=0.05  Score=46.88  Aligned_cols=61  Identities=38%  Similarity=0.677  Sum_probs=56.1

Q ss_pred             hheeeeeeeeecccceeeeeeeeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhc-----------ccccceeeeee
Q psy1031          29 EKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRII   97 (456)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~-----------~y~~~~f~rvi   97 (456)
                      +|.+|+|+.+.++..                 |+|+|+||.+.+|+||+||+.||+.+           +|+++.|||++
T Consensus        14 np~v~~Di~i~~~~~-----------------G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~   76 (195)
T d1ihga2          14 NPRVFFDVDIGGERV-----------------GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII   76 (195)
T ss_dssp             SCEEEEEEEETTEEE-----------------EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEE
T ss_pred             CCEEEEEEEECCEee-----------------eEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEE
Confidence            689999999988877                 99999999999999999999999854           69999999999


Q ss_pred             cceeEEeec
Q psy1031          98 RDFMIQAMG  106 (456)
Q Consensus        98 ~df~iq~~g  106 (456)
                      +++++|+|.
T Consensus        77 ~~~~i~~G~   85 (195)
T d1ihga2          77 KKFMIQGGD   85 (195)
T ss_dssp             TTTEEEECC
T ss_pred             cCceeecCC
Confidence            999999863

>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Reverse transcriptase
domain: MMLV reverse transcriptase
species: Moloney murine leukemia virus, MoMLV [TaxId: 11801]

Probab=80.31  E-value=0.63  Score=41.31  Aligned_cols=61  Identities=13%  Similarity=0.129  Sum_probs=43.3

Q ss_pred             cceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeeee
Q psy1031          90 GIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIK  169 (456)
Q Consensus        90 ~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~k  169 (456)
                      +....-++||+++.+      .......+.++.+.+-+.++|+.+|.+||++.                      .++++
T Consensus       193 ~~~~~~Y~DDili~s------~t~~eh~~~l~~vl~~l~~~gl~~~~~K~~~~----------------------~~~v~  244 (255)
T d1ztwa1         193 DLILLQYVDDLLLAA------TSELDCQQGTRALLQTLGNLGYRASAKKAQIC----------------------QKQVK  244 (255)
T ss_dssp             TCEEEEETTEEEEEE------SSHHHHHHHHHHHHHHHHHHTCCBCTTTCEEE----------------------ESEEE
T ss_pred             ceEEEEEeeeeeccC------CCHHHHHHHHHHHHHHHHHCcCEeCHHHeECC----------------------CCCcE
Confidence            334445678888763      22234556677777778899999999999863                      34688


Q ss_pred             eeEEEecCC
Q psy1031         170 DLGVTFQYN  178 (456)
Q Consensus       170 yLGV~ld~~  178 (456)
                      |||.++++.
T Consensus       245 fLG~~I~~G  253 (255)
T d1ztwa1         245 YLGYLLKEG  253 (255)
T ss_dssp             ETTEEEETT
T ss_pred             EeEEEEeCC
Confidence            999998754