Psyllid ID: psy10328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
PSNSNRNLSQSQSSSSSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDLSI
ccccccccccHHHHHHHcccccccccccccEEEEEEEccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccEEEEccccccccccccccHHHHHHHHHccHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccHHHHHHHHHHHccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccEEEEccHHHHHcccccHHHHHHHHHHcccHHHHHHcccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHEEEEEEcccccccccHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHcccccccEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
psnsnrnlsqsqsssssnqgaafqttppsrfigvldiygfetfdsnnFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGiewkfidfydnqpcidlIESKLGILDLldeeckmpkgsdtswAEKLYTKCSDKwskhfvkprfgagsflvkhfaddvtydtagfleknrDTVYEEQIALLHSstntsqqsstKSGAKRMAALAASktatlpsskskqhkktvgSQFRESLSLLMRTLNSTiphyircikpndtkrafeFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRIsaagfpsrwtygefyNRYRVLCGNLKQYNTAVHSMNEIGEHivtssiadcdkykfgktkiffRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDLSI
psnsnrnlsqsqsssssnqgaAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMpkgsdtswAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLhsstntsqqsstKSGAKRMAALAASktatlpsskskqhkktvgsqFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISaagfpsrwtyGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAeklkrcciviqknvrcflvRKKYLSILKsvatlqrwtrGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLglqcaargmlvrrevrrvrenraalriqtrvrgflarrnyeatrakivicqASIRRFLAKKRFKKMkkearsvehvkklnkglenkiismqqrigdlsi
PsnsnrnlsqsqsssssnqGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHsstntsqqsstksGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMlvrrevrrvrenraalrIQTRVRGFLARRNYEATRAKIVICQASIrrflakkrfkkmkkearSVEHVKKLNKGLENKIISMQQRIGDLSI
*****************************RFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALL*************************************************LSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRF************************************
****************************SRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTK*********************************RESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLK**********EIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRF******************GLENKIISMQQRIGDLSI
************************TTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLH********************************************FRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKR**********VEHVKKLNKGLENKIISMQQRIGDLSI
*SNSNRNLSQSQSSSSSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKS*************************KTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDLSI
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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PSNSNRNLSQSQSSSSSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSxxxxxxxxxxxxxxxxxxxxxIGDLSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
Q9QYF3 1828 Unconventional myosin-Va yes N/A 0.882 0.270 0.533 1e-157
Q9Y4I1 1855 Unconventional myosin-Va yes N/A 0.882 0.266 0.535 1e-157
Q99104 1853 Unconventional myosin-Va yes N/A 0.882 0.266 0.533 1e-156
Q02440 1829 Unconventional myosin-Va yes N/A 0.9 0.275 0.520 1e-155
P70569 1846 Unconventional myosin-Vb no N/A 0.883 0.268 0.514 1e-154
P21271 1818 Unconventional myosin-Vb no N/A 0.880 0.271 0.523 1e-154
Q9ULV0 1848 Unconventional myosin-Vb no N/A 0.882 0.267 0.513 1e-152
Q875Q8 1554 Myosin-2 OS=Lachancea klu N/A N/A 0.889 0.320 0.451 1e-129
Q875X3 1567 Myosin-2A OS=Naumovozyma yes N/A 0.885 0.316 0.442 1e-126
Q876G9 1568 Myosin-2 OS=Saccharomyces N/A N/A 0.889 0.317 0.440 1e-125
>sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 Back     alignment and function desciption
 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/540 (53%), Positives = 361/540 (66%), Gaps = 46/540 (8%)

Query: 31  FIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYD 90
           FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W  IDFYD
Sbjct: 432 FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYD 491

Query: 91  NQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLV 150
           NQPCI+LIESKLGILDLLDEECKMPKG+D +WA+KLY    +K +  F KPR    +F++
Sbjct: 492 NQPCINLIESKLGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCA-LFEKPRMSNKAFII 550

Query: 151 KHFADDVTYDTAGFLEKNRDTVYEEQIALLHSST-------------NTSQQSSTKSGAK 197
           KHFAD V Y   GFLEKN+DTV+EEQI +L SS                S  S+T SG  
Sbjct: 551 KHFADKVEYQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDEKAISPTSATSSGRT 610

Query: 198 RMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAF 257
            +  +    T   P   +K+HKKTVG QFR SL LLM TLN+T PHY+RCIKPND    F
Sbjct: 611 PLTRVPVKPTKGRPGQTAKEHKKTVGLQFRNSLHLLMETLNATTPHYVRCIKPND----F 666

Query: 258 EFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWT 317
           +F                         F F+  R +QQLRACGVLETIRISAAGFPSRWT
Sbjct: 667 KF------------------------PFTFDEKRAVQQLRACGVLETIRISAAGFPSRWT 702

Query: 318 YGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYL 377
           Y EF++RYRVL   +KQ +  +    +  ++++   I D DKY+FGKTKIFFR+GQVAYL
Sbjct: 703 YQEFFSRYRVL---MKQKDV-LGDRKQTCQNVLEKLILDKDKYQFGKTKIFFRAGQVAYL 758

Query: 378 EKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAA 437
           EKLRA+KL+  CI IQK +R +L+RK+YL + ++  T+QR+ RGY AR     +RRT+AA
Sbjct: 759 EKLRADKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAA 818

Query: 438 VRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLA 497
             IQ   R ++ RR+Y   RA  + LQ   RG L R   R++     A+ IQ RVRG+LA
Sbjct: 819 TTIQKYWRMYVVRRKYKIRRAATIVLQSYLRGYLARNRYRKILREHKAVIIQKRVRGWLA 878

Query: 498 RRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGD 557
           R +Y+ T   I+  Q   RR +AK+  KK+K EARSVE  KKL+ G+ENKI+ +Q+++ +
Sbjct: 879 RTHYKRTMKAIIYLQCCFRRMMAKRELKKLKIEARSVERYKKLHIGMENKIMQLQRKVDE 938
Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. Involved in melanosome transport. May also be required for some polarization process involved in dendrite formation.
Rattus norvegicus (taxid: 10116)
>sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 Back     alignment and function description
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 Back     alignment and function description
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 Back     alignment and function description
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 Back     alignment and function description
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 Back     alignment and function description
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 Back     alignment and function description
>sp|Q875Q8|MYO2_LACK1 Myosin-2 OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=MYO2 PE=3 SV=1 Back     alignment and function description
>sp|Q875X3|MYO2A_NAUCC Myosin-2A OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=MYO2A PE=3 SV=2 Back     alignment and function description
>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
270010527 1778 hypothetical protein TcasGA2_TC009935 [T 0.892 0.281 0.578 1e-176
91087053 1832 PREDICTED: similar to myosin VA (heavy p 0.892 0.272 0.578 1e-176
242004845 1754 myosin-5A, putative [Pediculus humanus c 0.887 0.283 0.583 1e-172
156546679 1826 PREDICTED: myosin-Va [Nasonia vitripenni 0.883 0.271 0.561 1e-167
328778355 1784 PREDICTED: LOW QUALITY PROTEIN: myosin-V 0.891 0.279 0.557 1e-165
383855428 1796 PREDICTED: unconventional myosin-Va [Meg 0.889 0.277 0.555 1e-165
332017573 1700 Myosin-Va [Acromyrmex echinatior] 0.891 0.293 0.554 1e-164
380013651 1852 PREDICTED: LOW QUALITY PROTEIN: unconven 0.891 0.269 0.546 1e-164
340723794 1851 PREDICTED: myosin-Va-like [Bombus terres 0.883 0.267 0.553 1e-164
350426534 1851 PREDICTED: myosin-Va-like [Bombus impati 0.883 0.267 0.553 1e-164
>gi|270010527|gb|EFA06975.1| hypothetical protein TcasGA2_TC009935 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/536 (57%), Positives = 394/536 (73%), Gaps = 36/536 (6%)

Query: 27  PPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFI 86
           P  +FIGVLDIYGFETF++N+FEQFCINYANEKLQQQFN HVFKLEQEEY++EGIEWK I
Sbjct: 433 PRHKFIGVLDIYGFETFETNSFEQFCINYANEKLQQQFNLHVFKLEQEEYIKEGIEWKMI 492

Query: 87  DFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAG 146
           DFYDNQPCIDLIE+KLGILDLLDEEC+MP+G+D+SW EKLY+KC+ K+S HF K RFG  
Sbjct: 493 DFYDNQPCIDLIETKLGILDLLDEECRMPRGTDSSWTEKLYSKCA-KYS-HFGKARFGTS 550

Query: 147 SFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASK 206
           +F + HFAD V Y++ GFLEKNRDTV EEQI+++  S N   +      ++++A   A  
Sbjct: 551 AFTINHFADKVQYESNGFLEKNRDTVIEEQISVVKRSKNDLVRRLFGDDSQKLAVPGAKL 610

Query: 207 ---TATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHR 263
              +A    +  K HKK+VGSQFR+SL++LM TLN+T PHY+RCIKPND+K+ FE+N  R
Sbjct: 611 KVISAKPAPTSQKTHKKSVGSQFRDSLNMLMTTLNATTPHYVRCIKPNDSKKPFEYNPKR 670

Query: 264 TMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYN 323
            +QQLRACGVLETIR                            ISAAGFPSRWTY +F+ 
Sbjct: 671 AVQQLRACGVLETIR----------------------------ISAAGFPSRWTYVDFFY 702

Query: 324 RYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAE 383
           RYRVLC   K  +   + M    ++I+   I + D ++FGKTKIFFR+GQVAYLEKLRA+
Sbjct: 703 RYRVLC---KFKDIKRNDMQLTCQNILNQYIKNKDMFQFGKTKIFFRAGQVAYLEKLRAD 759

Query: 384 KLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSA 443
           KLK CCI++QK +R F+ RKKYL I +    +QR+ RGYLAR+L  ++RR +AA  +Q  
Sbjct: 760 KLKACCIMMQKTIRAFIWRKKYLRIKRCTINIQRYGRGYLARKLAENLRREKAAKTLQRY 819

Query: 444 VRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQTRVRGFLARRNYEA 503
           VR +++R QY RL+A V G+Q  ARG L RR   ++R N  AL IQ  VRG+LARR+  A
Sbjct: 820 VRGWVKRVQYQRLKACVTGIQRYARGYLARRRYMQLRYNAKALVIQRYVRGYLARRSALA 879

Query: 504 TRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDLS 559
            + KIVICQA+IRRFLA++ +KK++ EARS+EHVKKLNKGLENKIIS+QQ+I +++
Sbjct: 880 YKRKIVICQAAIRRFLARRLYKKLRIEARSIEHVKKLNKGLENKIISLQQKIDEIT 935

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91087053|ref|XP_974649.1| PREDICTED: similar to myosin VA (heavy polypeptide 12, myoxin) [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242004845|ref|XP_002423287.1| myosin-5A, putative [Pediculus humanus corporis] gi|212506289|gb|EEB10549.1| myosin-5A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|156546679|ref|XP_001604064.1| PREDICTED: myosin-Va [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328778355|ref|XP_001122188.2| PREDICTED: LOW QUALITY PROTEIN: myosin-Va [Apis mellifera] Back     alignment and taxonomy information
>gi|383855428|ref|XP_003703214.1| PREDICTED: unconventional myosin-Va [Megachile rotundata] Back     alignment and taxonomy information
>gi|332017573|gb|EGI58273.1| Myosin-Va [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380013651|ref|XP_003690864.1| PREDICTED: LOW QUALITY PROTEIN: unconventional myosin-Va-like [Apis florea] Back     alignment and taxonomy information
>gi|340723794|ref|XP_003400273.1| PREDICTED: myosin-Va-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350426534|ref|XP_003494466.1| PREDICTED: myosin-Va-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
ZFIN|ZDB-GENE-031219-7 1525 myo5b "myosin VB" [Danio rerio 0.457 0.167 0.640 6.3e-143
UNIPROTKB|F1MMQ6 1845 MYO5B "Uncharacterized protein 0.448 0.136 0.648 1.4e-142
UNIPROTKB|F1LUM1 1818 Myo5b "Unconventional myosin-V 0.464 0.143 0.620 6.2e-140
UNIPROTKB|F1M3R4 1844 Myo5b "Unconventional myosin-V 0.464 0.140 0.620 6.7e-140
RGD|621347 1846 Myo5b "myosin Vb" [Rattus norv 0.464 0.140 0.620 1.4e-139
UNIPROTKB|P70569 1846 Myo5b "Unconventional myosin-V 0.464 0.140 0.620 1.4e-139
ZFIN|ZDB-GENE-050411-72 1395 myo5ab "myosin VAb" [Danio rer 0.460 0.184 0.623 1.7e-138
UNIPROTKB|F1PX71 1823 MYO5B "Uncharacterized protein 0.448 0.137 0.628 2.4e-138
MGI|MGI:106598 1818 Myo5b "myosin VB" [Mus musculu 0.448 0.138 0.632 8e-138
UNIPROTKB|Q9ULV0 1848 MYO5B "Unconventional myosin-V 0.448 0.135 0.631 1.3e-136
ZFIN|ZDB-GENE-031219-7 myo5b "myosin VB" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 856 (306.4 bits), Expect = 6.3e-143, Sum P(2) = 6.3e-143
 Identities = 171/267 (64%), Positives = 197/267 (73%)

Query:    25 TTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWK 84
             +T    FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W 
Sbjct:   427 STKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQIPWT 486

Query:    85 FIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFG 144
              IDFYDNQPCIDLIE+KLGILDLLDEECK+PKG+D +WA+KLY+K S   S HF KPR  
Sbjct:   487 LIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWAQKLYSKHSG--SGHFEKPRMS 544

Query:   145 AGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHXXXXXXXXXXXXXGAKRMAALAA 204
               SF+V HFAD V Y   GFLEKNRDTVYEEQI +L               AK  A    
Sbjct:   545 NKSFIVVHFADKVEYQCDGFLEKNRDTVYEEQINILKASKFQLVADLFDD-AKDAAPHPG 603

Query:   205 SKTATL--------PSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRA 256
             SKT+ +        P   +++H+KTVG+QFR SL LLM TLN+T PHY+RCIKPND K +
Sbjct:   604 SKTSRINVRPAKPAPKGHNREHRKTVGTQFRNSLHLLMETLNATTPHYVRCIKPNDYKES 663

Query:   257 FEFNAHRTMQQLRACGVLETIRISAAG 283
             F F++ R +QQLRACGVLETIRISAAG
Sbjct:   664 FVFDSRRAVQQLRACGVLETIRISAAG 690
GO:0016459 "myosin complex" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
UNIPROTKB|F1MMQ6 MYO5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUM1 Myo5b "Unconventional myosin-Vb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M3R4 Myo5b "Unconventional myosin-Vb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621347 Myo5b "myosin Vb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P70569 Myo5b "Unconventional myosin-Vb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050411-72 myo5ab "myosin VAb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX71 MYO5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:106598 Myo5b "myosin VB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULV0 MYO5B "Unconventional myosin-Vb" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99104MYO5A_MOUSENo assigned EC number0.53330.88210.2665yesN/A
Q02440MYO5A_CHICKNo assigned EC number0.52080.90.2755yesN/A
Q9Y4I1MYO5A_HUMANNo assigned EC number0.53510.88210.2663yesN/A
Q9QYF3MYO5A_RATNo assigned EC number0.53330.88210.2702yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 0.0
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-152
smart00242677 smart00242, MYSc, Myosin 1e-146
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 1e-124
cd00124679 cd00124, MYSc, Myosin motor domain 1e-121
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 1e-115
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-113
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 4e-92
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 5e-91
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 1e-88
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 6e-68
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 7e-63
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 3e-62
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 4e-61
PTZ00014821 PTZ00014, PTZ00014, myosin-A; Provisional 3e-52
cd01386767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 2e-19
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information 
 Score =  526 bits (1358), Expect = 0.0
 Identities = 222/363 (61%), Positives = 251/363 (69%), Gaps = 46/363 (12%)

Query: 28  PSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFID 87
            + FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFNQHVFKLEQEEYL+EGIEW FID
Sbjct: 366 QTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFID 425

Query: 88  FYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGS 147
           FYDNQPCIDLIESKLGIL LLDEEC++PKGSD SWA+KLY K   K + HF KPRFG  S
Sbjct: 426 FYDNQPCIDLIESKLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKPRFGQTS 485

Query: 148 FLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN---------TSQQSSTKSGAKR 198
           F VKHFADDV YD  GFLEKNRDTV +E + +L +S N             SS+ S AK 
Sbjct: 486 FTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAK- 544

Query: 199 MAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFE 258
                +   A  P  ++KQHK TVGSQF+ SL  LM TLNST PHYIRCIKPND K+ F+
Sbjct: 545 -----SKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFK 599

Query: 259 FNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTY 318
           F               E  R+             +QQLRACGVLETIRISAAGFPSRWTY
Sbjct: 600 F---------------EPKRV-------------LQQLRACGVLETIRISAAGFPSRWTY 631

Query: 319 GEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
            EF  RYRVL   +           ++ E+I+T  I D DKY+FGKTKIFFR+GQVA+LE
Sbjct: 632 EEFAQRYRVL---VPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLE 688

Query: 379 KLR 381
           KLR
Sbjct: 689 KLR 691

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014821 myosin-A; Provisional 100.0
KOG0164|consensus 1001 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
KOG0160|consensus862 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
KOG0161|consensus 1930 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
KOG0162|consensus 1106 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG0163|consensus 1259 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG4229|consensus1062 100.0
KOG0160|consensus862 98.82
COG5022 1463 Myosin heavy chain [Cytoskeleton] 98.28
KOG0520|consensus975 98.18
KOG0520|consensus975 97.96
KOG0164|consensus 1001 97.82
KOG2128|consensus 1401 97.69
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.3
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.16
smart0001526 IQ Short calmodulin-binding motif containing conse 96.26
smart0001526 IQ Short calmodulin-binding motif containing conse 96.08
PTZ00014821 myosin-A; Provisional 95.81
KOG2128|consensus 1401 95.42
KOG0161|consensus 1930 93.92
KOG4229|consensus1062 89.92
KOG0163|consensus 1259 81.71
KOG4427|consensus 1096 80.23
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-100  Score=847.80  Aligned_cols=495  Identities=42%  Similarity=0.704  Sum_probs=446.3

Q ss_pred             cccccccCCCCCCCceeEEeeccCccccCCCcchhhhhhhhhHHHHHHhHHHHHHHHHHHHhhcCCccccccccCCHhHH
Q psy10328         16 SSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCI   95 (560)
Q Consensus        16 ~~~~~~~~~~~~~~~~IgiLDi~GFE~~~~NsfEqlciNy~nErLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~l   95 (560)
                      .+|..+..... -.+|||||||||||+|+.|||||||||||||||||+|++|||+.||++|.+|||+|++|+|.||++||
T Consensus       415 rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~I  493 (1463)
T COG5022         415 RINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCI  493 (1463)
T ss_pred             HHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchh
Confidence            35655554433 45799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh--hcccccchhhhhcCCCCCcHHHHHHHHHHhc-CCCCCCccccCCCCCCcEEEeecceEEEeccccccccccch
Q psy10328         96 DLIES--KLGILDLLDEECKMPKGSDTSWAEKLYTKCS-DKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTV  172 (560)
Q Consensus        96 ~li~~--~~Gll~lLdee~~~~~~td~~fl~~l~~~~~-~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~v~gfl~kN~d~l  172 (560)
                      ||||+  |.|||++|||||.+|.+||++|..||.+.+. .++ +.|.+|+.++..|+|+||||+|+|+|+||++||+|++
T Consensus       494 DLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~-~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l  572 (1463)
T COG5022         494 DLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSN-PKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPL  572 (1463)
T ss_pred             HHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccC-ccccccccCCCceEEEeecccceeeccchhhhCcchh
Confidence            99998  8999999999999999999999999999884 344 8999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCcccccccchhhhhhhHHHhhccccCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCceeeecCCCC
Q psy10328        173 YEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPND  252 (560)
Q Consensus       173 ~~~~~~ll~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~sL~~L~~~L~~t~~hfIrCIkPN~  252 (560)
                      ++++++||..|+|+|+...+....               ...+++.++|+++.|++||.+||++|++|+||||||||||.
T Consensus       573 ~~~ll~Ll~~StNe~vs~Lf~~~~---------------~~~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~  637 (1463)
T COG5022         573 NDDLLELLKASTNEFVSTLFDDEE---------------NIESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNE  637 (1463)
T ss_pred             hHHHHHHHhhccchHHHHhhhhhh---------------hccccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCc
Confidence            999999999999999766553110               01245788999999999999999999999999999999999


Q ss_pred             ccCccccchhhhhhhhhhcccchhhhccccccccchhhhhhHHHhhhhhhHHHHHHhhCCCCcccHHHHHHHHHhhhcCc
Q psy10328        253 TKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGNL  332 (560)
Q Consensus       253 ~~~p~~fd~~~v~~q~r~~G~~e~~ri~~~g~~~~~~~~~~~Ql~~~~ile~~r~~~~gyp~r~~~~eF~~ry~~L~~~~  332 (560)
                      .+.|+.||..+|++                            ||+||||+|+|||+++|||.|++|.||+.||..|.|..
T Consensus       638 ~K~p~~fD~~mVL~----------------------------QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~  689 (1463)
T COG5022         638 EKSPWTFDNQMVLS----------------------------QLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSK  689 (1463)
T ss_pred             ccCccccchHHHHH----------------------------HHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccc
Confidence            99999999999999                            88888888888999999999999999999999999976


Q ss_pred             ccc-c-cccCchHHHHHHHhhhcccCcccccccccceeeehhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy10328        333 KQY-N-TAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK  410 (560)
Q Consensus       333 ~~~-~-~~~~~~k~~~~~ll~~l~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~Rg~l~R~~~~~~~~  410 (560)
                      ... + ...++.+.+|..||..+..++..|++|.|||||+.++++.||.+|...+..+++.||++|||+..|++|....+
T Consensus       690 ~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k  769 (1463)
T COG5022         690 SWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALK  769 (1463)
T ss_pred             cccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211 1 11267899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchhhHHHHhhhhhhcchhhhHHhHHHhhHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10328        411 SVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQ-CAARGMLVRREVRRVRENRAALRIQ  489 (560)
Q Consensus       411 ~~~~iQ~~~R~~~~r~~~~~~~~~~aa~~IQ~~~R~~~~Rr~~~~~r~aai~iQ-~~~R~~~~Rr~~~~~~~~~aa~~IQ  489 (560)
                      .+..+|...+++..++...+.....+++.+|..|+....|+.|...-.+++.+| ..++....+..........+++.+|
T Consensus       770 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~  849 (1463)
T COG5022         770 RIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQ  849 (1463)
T ss_pred             HHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999888766555566789999999999999999999999999999 6666666666455555568999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10328        490 TRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRI  555 (560)
Q Consensus       490 ~~~R~~~~Rr~~~~~~~a~i~iQ~~~R~~~aR~~~~~lk~~~~~~~~~~~~~~~~e~~~~~l~~~~  555 (560)
                      ++||.+..+++|..+.+.++.+|..+|.-.|++++..++.+.+.+..+...+.+++.++.++--.+
T Consensus       850 ~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~  915 (1463)
T COG5022         850 KFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSL  915 (1463)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999998888776544

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520|consensus Back     alignment and domain information
>KOG0520|consensus Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 1e-141
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 1e-115
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 1e-110
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 7e-68
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 8e-68
1b7t_A835 Myosin Digested By Papain Length = 835 9e-68
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 9e-68
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 1e-67
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 3e-67
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 1e-66
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 6e-66
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 5e-65
3dtp_B973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 6e-64
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 6e-64
3dtp_A971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 7e-64
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-63
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 3e-63
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 3e-63
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 3e-63
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 3e-63
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 4e-60
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-58
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-58
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 3e-58
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-58
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 3e-58
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 5e-58
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 5e-58
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 5e-58
1g8x_A1010 Structure Of A Genetically Engineered Molecular Mot 5e-58
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 2e-57
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 2e-57
2y9e_X758 Structural Basis For The Allosteric Interference Of 2e-57
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 2e-57
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-57
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 3e-57
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 4e-57
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 4e-57
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 5e-57
2y0r_X758 Structural Basis For The Allosteric Interference Of 7e-57
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-56
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 3e-56
2ycu_A995 Crystal Structure Of Human Non Muscle Myosin 2c In 3e-56
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 1e-55
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 3e-54
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 4e-54
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 6e-50
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 7e-49
2bki_A858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 8e-48
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 6e-47
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 9e-47
2vas_A788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 1e-46
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 1e-46
2bkh_A814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 1e-46
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-46
4dbp_A814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 1e-46
4dbq_A788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 1e-46
2x51_A789 M6 Delta Insert1 Length = 789 1e-46
3l9i_A814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 1e-46
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 2e-46
2ix7_C58 Structure Of Apo-Calmodulin Bound To Unconventional 8e-07
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/551 (48%), Positives = 339/551 (61%), Gaps = 47/551 (8%)
Query: 21  AAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEG 80
           A   T     FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E 
Sbjct: 422 ALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQ 481
Query: 81  IEWKFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVK 140
           I W  IDFYDNQPCI+LIE+K+G+LDLLDEECKMPKGSD +WA+KLY    +K +  F K
Sbjct: 482 IPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCAL-FEK 540
Query: 141 PRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHXXXXXXXXXXXXXG-AKRM 199
           PR    +F++KHFAD V Y   GFLEKN+DTVYEEQI +L                 K +
Sbjct: 541 PRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAI 600
Query: 200 AALAASKTATLPSSK-------------SKQHKKTVGSQFRESLSLLMRTLNSTIPHYIR 246
           +  +A+ +  +P S+             SK+HKKTVG QFR SL LLM TLN+T PHY+R
Sbjct: 601 SPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVR 660
Query: 247 CIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIR 306
           CIKPND K  F F+  R +QQLRACGVLETIR                            
Sbjct: 661 CIKPNDFKFPFTFDEKRAVQQLRACGVLETIR---------------------------- 692
Query: 307 ISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTK 366
           ISAAGFPSRWTY EF++RYRVL   +KQ +  +    +  ++++   I D DKY+FGKTK
Sbjct: 693 ISAAGFPSRWTYQEFFSRYRVL---MKQKDV-LSDRKQTCKNVLEKLILDKDKYQFGKTK 748
Query: 367 IFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARR 426
           IFFR+GQVAYLEK+RA+KL+  CI IQK +R +L+RKKY+ + ++  T+QR+ RG+ AR 
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARC 808
Query: 427 LVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMXXXXXXXXXXXXXXXX 486
               +RRTRAA+ IQ   R ++ R++Y  +R   + LQ   RG                 
Sbjct: 809 YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868
Query: 487 XIQTRVRGFLARRNYEATRAKIVICQASIXXXXXXXXXXXXXXXXXSVEHVKKLNKGLEN 546
            IQ  VRG+LAR +Y  T   IV  Q                    SVE  KKL+ GLEN
Sbjct: 869 IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928
Query: 547 KIISMQQRIGD 557
           KI+ +Q++I +
Sbjct: 929 KIMQLQRKIDE 939
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V Length = 58 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 0.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 0.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 0.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 0.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 1e-176
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 1e-08
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 1e-171
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 1e-168
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 1e-166
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 1e-164
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 8e-18
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 2e-05
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 2e-04
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score =  672 bits (1737), Expect = 0.0
 Identities = 283/549 (51%), Positives = 354/549 (64%), Gaps = 47/549 (8%)

Query: 24  QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
            T     FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W
Sbjct: 425 STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484

Query: 84  KFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF 143
             IDFYDNQPCI+LIE+K+G+LDLLDEECKMPKGSD +WA+KLY    +K    F KPR 
Sbjct: 485 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNK-CALFEKPRL 543

Query: 144 GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN--------------TSQQ 189
              +F++KHFAD V Y   GFLEKN+DTVYEEQI +L SS                 S  
Sbjct: 544 SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603

Query: 190 SSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
           S+T SG   ++          P   SK+HKKTVG QFR SL LLM TLN+T PHY+RCIK
Sbjct: 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663

Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
           PND K                              F F+  R +QQLRACGVLETIRISA
Sbjct: 664 PNDFKFP----------------------------FTFDEKRAVQQLRACGVLETIRISA 695

Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFF 369
           AGFPSRWTY EF++RYRVL       +       +  ++++   I D DKY+FGKTKIFF
Sbjct: 696 AGFPSRWTYQEFFSRYRVLMKQKDVLS----DRKQTCKNVLEKLILDKDKYQFGKTKIFF 751

Query: 370 RSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVL 429
           R+GQVAYLEK+RA+KL+  CI IQK +R +L+RKKY+ + ++  T+QR+ RG+ AR    
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT 811

Query: 430 HMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQ 489
            +RRTRAA+ IQ   R ++ R++Y  +R   + LQ   RG LVR + + +     ++ IQ
Sbjct: 812 FLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQ 871

Query: 490 TRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKII 549
             VRG+LAR +Y  T   IV  Q   RR +AK+  KK+K EARSVE  KKL+ GLENKI+
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931

Query: 550 SMQQRIGDL 558
            +Q++I + 
Sbjct: 932 QLQRKIDEQ 940
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 100.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.85
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.96
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.94
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.74
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.44
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.43
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.38
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 97.32
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.19
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.87
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 96.72
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 95.83
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 95.33
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 94.91
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.78
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.74
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 94.64
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 89.12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
Probab=100.00  E-value=1.3e-115  Score=1010.91  Aligned_cols=509  Identities=55%  Similarity=0.885  Sum_probs=433.0

Q ss_pred             cccccccCCCCCCCceeEEeeccCccccCCCcchhhhhhhhhHHHHHHhHHHHHHHHHHHHhhcCCccccccccCCHhHH
Q psy10328         16 SSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQPCI   95 (560)
Q Consensus        16 ~~~~~~~~~~~~~~~~IgiLDi~GFE~~~~NsfEqlciNy~nErLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~~l   95 (560)
                      .+|+.++.+. +...+||||||||||+|+.|||||||||||||+||++|++|+|+.||+||.+|||+|+.|+|.||++||
T Consensus       418 ~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~i  496 (1080)
T 2dfs_A          418 HVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCI  496 (1080)
T ss_dssp             HHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHH
T ss_pred             HHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHH
Confidence            4677666443 457899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccchhhhhcCCCCCcHHHHHHHHHHhcCCCCCCccccCCCCCCcEEEeecceEEEeccccccccccchhHH
Q psy10328         96 DLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEE  175 (560)
Q Consensus        96 ~li~~~~Gll~lLdee~~~~~~td~~fl~~l~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Y~v~gfl~kN~d~l~~~  175 (560)
                      |||++|.|||+||||||++|++||++|+++|+..|.++| ++|.+|+.....|+|+||||+|+|+++||++||+|.|+++
T Consensus       497 dlie~~~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~-~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~  575 (1080)
T 2dfs_A          497 NLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKC-ALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEE  575 (1080)
T ss_dssp             HHHHSTTSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTB-SSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHH
T ss_pred             HHHhcCCceeeeccccccCCCCChHHHHHHHHHHhhcCC-CCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHH
Confidence            999999999999999999999999999999999886888 9999999888999999999999999999999999999999


Q ss_pred             HHHHHHhc-Ccccccccchhhh-------------hhhHHHhhccccCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q psy10328        176 QIALLHSS-TNTSQQSSTKSGA-------------KRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTI  241 (560)
Q Consensus       176 ~~~ll~~S-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~sL~~L~~~L~~t~  241 (560)
                      +++||++| +++|....+....             .+++....+++.+.|+...+.+++||+++|+.||+.||++|.+|+
T Consensus       576 ~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~  655 (1080)
T 2dfs_A          576 QIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATT  655 (1080)
T ss_dssp             HHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHHHHHHHHHHHSSE
T ss_pred             HHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence            99999999 9999655442210             001111111111222233456789999999999999999999999


Q ss_pred             CceeeecCCCCccCccccchhhhhhhhhhcccchhhhccccccccchhhhhhHHHhhhhhhHHHHHHhhCCCCcccHHHH
Q psy10328        242 PHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEF  321 (560)
Q Consensus       242 ~hfIrCIkPN~~~~p~~fd~~~v~~q~r~~G~~e~~ri~~~g~~~~~~~~~~~Ql~~~~ile~~r~~~~gyp~r~~~~eF  321 (560)
                      ||||||||||+.+.|+.||...|++                            ||+|+||||++|+++.|||+|++|.+|
T Consensus       656 phfVRCIkPN~~k~p~~fd~~~V~~----------------------------QLr~~GvlE~iri~r~Gyp~R~~~~eF  707 (1080)
T 2dfs_A          656 PHYVRCIKPNDFKFPFTFDEKRAVQ----------------------------QLRACGVLETIRISAAGFPSRWTYQEF  707 (1080)
T ss_dssp             EEEEEEECCCSSCCTTCCCHHHHHH----------------------------HHHTTTHHHHHHHHTTSCCEEEEHHHH
T ss_pred             CeeEEEecCCCCCCchhcCHHhhHH----------------------------HHhhcccHHHHhHHhcCCCchhhHHHH
Confidence            9999999999999999999999999                            999999999999999999999999999


Q ss_pred             HHHHHhhhcCccccccccCchHHHHHHHhhhcccCcccccccccceeeehhhHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q psy10328        322 YNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLV  401 (560)
Q Consensus       322 ~~ry~~L~~~~~~~~~~~~~~k~~~~~ll~~l~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~Rg~l~  401 (560)
                      +.||+.|+|..   ... .|.++.|+.+|..+.+++++|++|+|||||+.+.+..||++|...+..+|+.||++||||+.
T Consensus       708 ~~RY~~L~~~~---~~~-~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~  783 (1080)
T 2dfs_A          708 FSRYRVLMKQK---DVL-SDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLM  783 (1080)
T ss_dssp             HHHHTTTSCGG---GCC-SSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcc---CCC-CChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875   222 28999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchhhHHHHhhhhhhcchhhhHHhHHHhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy10328        402 RKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRE  481 (560)
Q Consensus       402 R~~~~~~~~~~~~iQ~~~R~~~~r~~~~~~~~~~aa~~IQ~~~R~~~~Rr~~~~~r~aai~iQ~~~R~~~~Rr~~~~~~~  481 (560)
                      |++|.+++.+++.||++||++++|+.+..+++..||+.||++||||++|+.|..++.+++.||++|||+++|+.+..++.
T Consensus       784 Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~  863 (1080)
T 2dfs_A          784 RKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR  863 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy10328        482 NRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDL  558 (560)
Q Consensus       482 ~~aa~~IQ~~~R~~~~Rr~~~~~~~a~i~iQ~~~R~~~aR~~~~~lk~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~  558 (560)
                      +.+|+.||++||||++|+.|...+++++.||+.||++++|++++.|+.+++.++++++.+.++|+++++|+++|+++
T Consensus       864 ~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~  940 (1080)
T 2dfs_A          864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ  940 (1080)
T ss_dssp             HHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999764
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 560
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 1e-112
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 0.001
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-107
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 2e-08
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-105
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 3e-08
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 3e-99
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 4e-95
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-94
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score =  347 bits (891), Expect = e-112
 Identities = 220/399 (55%), Positives = 262/399 (65%), Gaps = 47/399 (11%)

Query: 24  QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
            T     FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W
Sbjct: 363 STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 422

Query: 84  KFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF 143
             IDFYDNQPCI+LIE+K+G+LDLLDEECKMPKGSD +WA+KLY    +K    F KPR 
Sbjct: 423 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNK-CALFEKPRL 481

Query: 144 GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN--------------TSQQ 189
              +F++KHFAD V Y   GFLEKN+DTVYEEQI +L SS                 S  
Sbjct: 482 SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 541

Query: 190 SSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
           S+T SG   ++          P   SK+HKKTVG QFR SL LLM TLN+T PHY+RCIK
Sbjct: 542 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 601

Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
           PND K                              F F+  R +QQLRACGVLETIRISA
Sbjct: 602 PNDFKFP----------------------------FTFDEKRAVQQLRACGVLETIRISA 633

Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFF 369
           AGFPSRWTY EF++RYRVL          +    +  ++++   I D DKY+FGKTKIFF
Sbjct: 634 AGFPSRWTYQEFFSRYRVLMKQKDV----LSDRKQTCKNVLEKLILDKDKYQFGKTKIFF 689

Query: 370 RSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSI 408
           R+GQVAYLEK+RA+KL+  CI IQK +R +L+RKKY+ +
Sbjct: 690 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRM 728
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.25
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.16
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 81.21
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=9.6e-86  Score=741.41  Aligned_cols=384  Identities=40%  Similarity=0.672  Sum_probs=321.4

Q ss_pred             ccccccCCCCCCCceeEEeeccCccccCCCcchhhhhhhhhHHHHHHhHHHHHHHHHHHHhhcCCccccccccCCHh-HH
Q psy10328         17 SNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDNQP-CI   95 (560)
Q Consensus        17 ~~~~~~~~~~~~~~~IgiLDi~GFE~~~~NsfEqlciNy~nErLq~~f~~~~f~~eq~~y~~Egi~~~~i~~~dn~~-~l   95 (560)
                      +|+..... .+..++||||||||||+|+.|||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||.+ |+
T Consensus       396 IN~~l~~~-~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~  474 (794)
T d2mysa2         396 INQQLDTK-QPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACI  474 (794)
T ss_dssp             HHHHTCCS-SCCCEEEEEEEEECCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSTHHHHHHH
T ss_pred             hhhhcccC-CCcceEEEEeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCHHHHH
Confidence            55555443 24467899999999999999999999999999999999999999999999999999999999986655 55


Q ss_pred             HHHhhhcccccchhhhhcCCCCCcHHHHHHHHHHhcCCCCCCccccCC----CCCCcEEEeecceEEEeccccccccccc
Q psy10328         96 DLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF----GAGSFLVKHFADDVTYDTAGFLEKNRDT  171 (560)
Q Consensus        96 ~li~~~~Gll~lLdee~~~~~~td~~fl~~l~~~~~~~~~~~~~~~~~----~~~~F~I~H~aG~V~Y~v~gfl~kN~d~  171 (560)
                      +++++|.|||++|||||.+|++||++|+++|+..|.+++ +.|.+|..    .+.+|+|+||||+|+|+|+||++||+|.
T Consensus       475 ~l~~kp~Gil~lLdee~~~~~~td~~f~~kl~~~~~~~~-~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~  553 (794)
T d2mysa2         475 ELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLGKS-NNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDP  553 (794)
T ss_dssp             HHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHHHHHBTTB-SSEECCCCC---CCCSEEEECSSCEEEECCSSHHHHHHCC
T ss_pred             HHHhCcccHHHHHHHhccCccccHHHHHHHHHHHhcCCC-ccccCCCccCCCCCCceEEEeeCceeeehhcchHHhccCc
Confidence            566788999999999999999999999999998885666 78877653    3568999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCcccccccchhhhhhhHHHhhccccCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCceeeecCCC
Q psy10328        172 VYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPN  251 (560)
Q Consensus       172 l~~~~~~ll~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~sL~~L~~~L~~t~~hfIrCIkPN  251 (560)
                      +++++++||++|++++....++.......    .+...........+..||+++|+.||++||++|++|+||||||||||
T Consensus       554 l~~~~~~ll~~S~~~~i~~lf~~~~~~~~----~~~~~~~~~~~~~~~~Tv~~~fr~sL~~L~~~L~~t~~hFIRCIKPN  629 (794)
T d2mysa2         554 LNETVIGLYQKSSVKTLALLFATYGGEAE----GGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPN  629 (794)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHTSCC------------------------CCSHHHHHHHHHHHHHHHHTSEEEEEEEECCC
T ss_pred             ccHHHHHHHHhCCCHHHHHhhhhcccccc----cccCCcCCCCCCCccccHHHHHHHHHHHHHHHHhcCCCeEEEeecCC
Confidence            99999999999999996665532110000    00001111123345679999999999999999999999999999999


Q ss_pred             CccCccccchhhhhhhhhhcccchhhhccccccccchhhhhhHHHhhhhhhHHHHHHhhCCCCcccHHHHHHHHHhhhcC
Q psy10328        252 DTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCGN  331 (560)
Q Consensus       252 ~~~~p~~fd~~~v~~q~r~~G~~e~~ri~~~g~~~~~~~~~~~Ql~~~~ile~~r~~~~gyp~r~~~~eF~~ry~~L~~~  331 (560)
                      +.+.|+.||...|.+                            ||+++||||++|+++.|||+|++|.+|+.||+.|++.
T Consensus       630 ~~k~p~~Fd~~~V~~----------------------------QLr~~GvLE~vri~r~Gyp~R~~~~eF~~RY~~L~~~  681 (794)
T d2mysa2         630 ETKTPGAMEHELVLH----------------------------QLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNAS  681 (794)
T ss_dssp             TTCCTTCCCHHHHHH----------------------------HHHHHSHHHHHHHHTTSCCCEEEHHHHHHHHGGGTTT
T ss_pred             cccCCcccchHHHHH----------------------------HHHhcCHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence            999999999999999                            9999999999999999999999999999999999986


Q ss_pred             ccccccccCchHHHHHHHhhhcccCcccccccccceeeehhhHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy10328        332 LKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKS  411 (560)
Q Consensus       332 ~~~~~~~~~~~k~~~~~ll~~l~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~Rg~l~R~~~~~~~~~  411 (560)
                      ... .....|.++.|+.+|+.+..++.+|++|+||||||.+.+..||+.|.+.+..+++.||++||||++|++|++++. 
T Consensus       682 ~~~-~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~-  759 (794)
T d2mysa2         682 AIP-EGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVE-  759 (794)
T ss_dssp             C-------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccc-ccccCCHHHHHHHHHHhcCCCcccEEeCCCeEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            522 223468899999999999999999999999999999999999999999999999999999999999998876521 


Q ss_pred             HHHhhccchhhHHHHhhhhhhcchhhhHHhHHHhhHHHHHHHHHHh
Q psy10328        412 VATLQRWTRGYLARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLR  457 (560)
Q Consensus       412 ~~~iQ~~~R~~~~r~~~~~~~~~~aa~~IQ~~~R~~~~Rr~~~~~r  457 (560)
                                           ++.|++.||+.||+|++||.|..+|
T Consensus       760 ---------------------~r~a~~~IQ~~~R~~~~~r~~~~~r  784 (794)
T d2mysa2         760 ---------------------RRESIFCIQYNVRSFMNVKHWPWMK  784 (794)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHhccHHHH
Confidence                                 1246777888888888777775444
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure