Psyllid ID: psy10355
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R050 | 636 | Eukaryotic peptide chain | yes | N/A | 0.852 | 0.209 | 0.819 | 2e-63 | |
| P15170 | 499 | Eukaryotic peptide chain | no | N/A | 0.852 | 0.266 | 0.819 | 3e-63 | |
| Q5R4B3 | 628 | Eukaryotic peptide chain | yes | N/A | 0.852 | 0.211 | 0.819 | 4e-63 | |
| Q8IYD1 | 628 | Eukaryotic peptide chain | no | N/A | 0.852 | 0.211 | 0.819 | 5e-63 | |
| Q149F3 | 632 | Eukaryotic peptide chain | no | N/A | 0.852 | 0.210 | 0.804 | 3e-62 | |
| O74718 | 662 | Eukaryotic peptide chain | yes | N/A | 0.878 | 0.206 | 0.623 | 1e-49 | |
| Q9HGI4 | 662 | Eukaryotic peptide chain | no | N/A | 0.852 | 0.200 | 0.624 | 2e-48 | |
| Q9HGI8 | 700 | Eukaryotic peptide chain | yes | N/A | 0.852 | 0.19 | 0.609 | 7e-48 | |
| P23637 | 741 | Eukaryotic peptide chain | N/A | N/A | 0.846 | 0.178 | 0.624 | 5e-47 | |
| Q9HGI7 | 712 | Eukaryotic peptide chain | N/A | N/A | 0.846 | 0.185 | 0.616 | 1e-46 |
| >sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 327
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 328 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 387
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 388 NPKKDIHFMPCSG 400
|
Involved in translation termination in response to the termination codons UAA, UAG and UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Mus musculus (taxid: 10090) |
| >sp|P15170|ERF3A_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 190
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 191 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 250
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 251 NPKKDIHFMPCSG 263
|
Involved in translation termination in response to the termination codons UAA, UAG and UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Homo sapiens (taxid: 9606) |
| >sp|Q5R4B3|ERF3B_PONAB Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET+RKHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 260 QEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 319
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 320 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGF 379
Query: 129 NAAKDLSFMPCSG 141
+ KD+ FMPCSG
Sbjct: 380 SPKKDIHFMPCSG 392
|
Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Pongo abelii (taxid: 9601) |
| >sp|Q8IYD1|ERF3B_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET+RKHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 260 QEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 319
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 320 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGF 379
Query: 129 NAAKDLSFMPCSG 141
+ KD+ FMPCSG
Sbjct: 380 SPKKDIHFMPCSG 392
|
Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Homo sapiens (taxid: 9606) |
| >sp|Q149F3|ERF3B_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 107/133 (80%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 264 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 323
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVK+L+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 324 ETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGF 383
Query: 129 NAAKDLSFMPCSG 141
+ KD+ FMPCSG
Sbjct: 384 SPKKDIHFMPCSG 396
|
Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Mus musculus (taxid: 10090) |
| >sp|O74718|ERF3_SCHPO Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sup35 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 113/138 (81%), Gaps = 1/138 (0%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GF 128
GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++ G+
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 415
Query: 129 NAAKDLSFMPCSGELEKN 146
N+ D+ +MP S +N
Sbjct: 416 NSKTDVKYMPVSAYTGQN 433
|
Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9HGI4|ERF3_ZYGRO Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 110/133 (82%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
R++R+ GKT+EVGRAYFET+++ +TILDAPGHK +V MIGG +QAD+ +LVISARKGE+
Sbjct: 294 REERDDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEY 353
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHA+LAKT GV L+V INKMDDPTV WS+ RY++C + +LK +G+
Sbjct: 354 ETGFEKGGQTREHALLAKTQGVNKLIVTINKMDDPTVNWSKERYDQCVKNLSNFLKAIGY 413
Query: 129 NAAKDLSFMPCSG 141
N +++ FMP SG
Sbjct: 414 NVKEEVVFMPVSG 426
|
Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Zygosaccharomyces rouxii (taxid: 4956) |
| >sp|Q9HGI8|ERF3_KLULA Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SUP35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 108/133 (81%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R GKT+EVGRAYFET+++ +TILDAPGHK +V MIGG +QAD+ +LVISARKGE+
Sbjct: 331 KEERNDGKTIEVGRAYFETEKRRYTILDAPGHKMYVSEMIGGASQADIGILVISARKGEY 390
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHA+LAKT GV ++V+INKMDDPTV W + RY+ C + +LK +G+
Sbjct: 391 ETGFEKGGQTREHALLAKTQGVNKMIVVINKMDDPTVGWDKERYDHCVGNLTNFLKAVGY 450
Query: 129 NAAKDLSFMPCSG 141
N +D+ FMP SG
Sbjct: 451 NVKEDVIFMPVSG 463
|
Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) |
| >sp|P23637|ERF3_OGAPI Eukaryotic peptide chain release factor GTP-binding subunit OS=Ogataea pini GN=SUP2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 107/133 (80%), Gaps = 1/133 (0%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R GKT+EVG++YFETD++ +TILDAPGHK ++ MIGG +QAD+ VLVIS+RKGE+
Sbjct: 375 KEERNDGKTIEVGKSYFETDKRRYTILDAPGHKLYISEMIGGASQADVGVLVISSRKGEY 434
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
E GF+RGGQ+REHA+LAKT GV LVV+INKMDDPTV WS+ RY EC K+ YLK +G+
Sbjct: 435 EAGFERGGQSREHAILAKTQGVNKLVVVINKMDDPTVNWSKERYEECTTKLAMYLKGVGY 494
Query: 129 NAAKDLSFMPCSG 141
D+ FMP SG
Sbjct: 495 QKG-DVLFMPVSG 506
|
Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Ogataea pini (taxid: 4923) |
| >sp|Q9HGI7|ERF3_CANMA Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/133 (61%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R GKT+EVG+AYFETD++ +TILDAPGHK +V MIGG +QAD+ +LVISARKGE+
Sbjct: 346 KEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEY 405
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHA+LAKT GV ++V++NKMDDPTV WS+ RY EC K+ +LK +G+
Sbjct: 406 ETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVNWSKERYQECTTKLGVFLKGIGY 465
Query: 129 NAAKDLSFMPCSG 141
N D+ MP SG
Sbjct: 466 N-KDDIINMPVSG 477
|
Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Candida maltosa (taxid: 5479) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | ||||||
| 194761374 | 634 | GF14198 [Drosophila ananassae] gi|190616 | 0.852 | 0.209 | 0.902 | 4e-68 | |
| 195472375 | 619 | GE18589 [Drosophila yakuba] gi|194174577 | 0.852 | 0.214 | 0.909 | 5e-68 | |
| 195435067 | 640 | GK15498 [Drosophila willistoni] gi|19416 | 0.852 | 0.207 | 0.902 | 6e-68 | |
| 195147604 | 621 | GL19348 [Drosophila persimilis] gi|19847 | 0.852 | 0.214 | 0.902 | 9e-68 | |
| 345485415 | 652 | PREDICTED: eukaryotic peptide chain rele | 0.865 | 0.207 | 0.896 | 1e-67 | |
| 195401202 | 639 | GJ16266 [Drosophila virilis] gi|19415607 | 0.852 | 0.208 | 0.902 | 1e-67 | |
| 195578747 | 619 | GD23839 [Drosophila simulans] gi|1941912 | 0.852 | 0.214 | 0.902 | 1e-67 | |
| 17137380 | 619 | Ef1alpha-like factor, isoform A [Drosoph | 0.852 | 0.214 | 0.902 | 1e-67 | |
| 242009574 | 575 | eukaryotic peptide chain release factor | 0.852 | 0.231 | 0.909 | 1e-67 | |
| 289741991 | 599 | polypeptide release factor 3 [Glossina m | 0.852 | 0.222 | 0.902 | 1e-67 |
| >gi|194761374|ref|XP_001962904.1| GF14198 [Drosophila ananassae] gi|190616601|gb|EDV32125.1| GF14198 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 267 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 326
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 327 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 386
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 387 NPAKDLTFMPCSG 399
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195472375|ref|XP_002088476.1| GE18589 [Drosophila yakuba] gi|194174577|gb|EDW88188.1| GE18589 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 121/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 252 QEERDKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 311
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 312 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 371
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 372 NPAKDLTFMPCSG 384
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195435067|ref|XP_002065523.1| GK15498 [Drosophila willistoni] gi|194161608|gb|EDW76509.1| GK15498 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 273 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 332
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 333 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 392
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 393 NPAKDLTFMPCSG 405
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195147604|ref|XP_002014769.1| GL19348 [Drosophila persimilis] gi|198474087|ref|XP_002132622.1| GA25929 [Drosophila pseudoobscura pseudoobscura] gi|194106722|gb|EDW28765.1| GL19348 [Drosophila persimilis] gi|198138241|gb|EDY70024.1| GA25929 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 254 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 313
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 314 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVSWDQTRYNECKDKILPYLKKLGF 373
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 374 NPAKDLTFMPCSG 386
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345485415|ref|XP_001605609.2| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/135 (89%), Positives = 130/135 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++REKGKTVEVGRAYFET+RKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 285 QEEREKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 344
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W EARYNEC+DKILPYL+KLGF
Sbjct: 345 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVEWDEARYNECRDKILPYLRKLGF 404
Query: 129 NAAKDLSFMPCSGEL 143
N AKDL+FMP SG+L
Sbjct: 405 NPAKDLTFMPVSGQL 419
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195401202|ref|XP_002059203.1| GJ16266 [Drosophila virilis] gi|194156077|gb|EDW71261.1| GJ16266 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 272 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 331
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 332 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQGRYNECKDKILPYLKKLGF 391
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 392 NPAKDLTFMPCSG 404
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195578747|ref|XP_002079225.1| GD23839 [Drosophila simulans] gi|194191234|gb|EDX04810.1| GD23839 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 252 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 311
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 312 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 371
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 372 NPAKDLTFMPCSG 384
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|17137380|ref|NP_477259.1| Ef1alpha-like factor, isoform A [Drosophila melanogaster] gi|442627618|ref|NP_001260415.1| Ef1alpha-like factor, isoform B [Drosophila melanogaster] gi|7297950|gb|AAF53194.1| Ef1alpha-like factor, isoform A [Drosophila melanogaster] gi|17945080|gb|AAL48601.1| RE07731p [Drosophila melanogaster] gi|440213747|gb|AGB92950.1| Ef1alpha-like factor, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 252 QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 311
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 312 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 371
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 372 NPAKDLTFMPCSG 384
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009574|ref|XP_002425558.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis] gi|212509437|gb|EEB12820.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/133 (90%), Positives = 129/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++REKGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 208 QEEREKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 267
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV WSE RYNEC+DKILPYL+KLGF
Sbjct: 268 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVEWSEDRYNECRDKILPYLRKLGF 327
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 328 NPAKDLTFMPCSG 340
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289741991|gb|ADD19743.1| polypeptide release factor 3 [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 128/133 (96%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRA+FET+RKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 232 QEERDKGKTVEVGRAFFETERKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 291
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W EARYNECKDKILPYLKKLGF
Sbjct: 292 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDEARYNECKDKILPYLKKLGF 351
Query: 129 NAAKDLSFMPCSG 141
N KDL+FMPCSG
Sbjct: 352 NPTKDLTFMPCSG 364
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | ||||||
| FB|FBgn0020443 | 619 | Elf "Ef1alpha-like factor" [Dr | 0.852 | 0.214 | 0.894 | 1.1e-62 | |
| UNIPROTKB|Q6AYD5 | 636 | Gspt1 "G1 to S phase transitio | 0.852 | 0.209 | 0.819 | 5.7e-59 | |
| UNIPROTKB|E1BYG8 | 627 | GSPT1 "Uncharacterized protein | 0.852 | 0.212 | 0.819 | 7.3e-59 | |
| UNIPROTKB|F1NBR4 | 643 | GSPT1 "Uncharacterized protein | 0.852 | 0.206 | 0.819 | 7.3e-59 | |
| UNIPROTKB|F6Q087 | 605 | GSPT1 "Uncharacterized protein | 0.852 | 0.219 | 0.819 | 7.3e-59 | |
| UNIPROTKB|E2R0S8 | 522 | GSPT1 "Uncharacterized protein | 0.852 | 0.254 | 0.819 | 7.3e-59 | |
| UNIPROTKB|F1PM36 | 528 | GSPT1 "Uncharacterized protein | 0.852 | 0.251 | 0.819 | 7.3e-59 | |
| UNIPROTKB|H3BR35 | 475 | GSPT1 "Eukaryotic peptide chai | 0.852 | 0.28 | 0.819 | 7.3e-59 | |
| UNIPROTKB|J3KQG6 | 637 | GSPT1 "Eukaryotic peptide chai | 0.852 | 0.208 | 0.819 | 7.3e-59 | |
| UNIPROTKB|P15170 | 499 | GSPT1 "Eukaryotic peptide chai | 0.852 | 0.266 | 0.819 | 7.3e-59 |
| FB|FBgn0020443 Elf "Ef1alpha-like factor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 119/133 (89%), Positives = 127/133 (95%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTV VGRA+FETDRKHFTILDAPGHKSFVPNMIGG AQADLAVLVISARKGEF
Sbjct: 252 QEERDKGKTVGVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEF 311
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGFDRGGQTREHAMLAKTAGVKHLVVL+NKMDDPTV W + RYNECKDKILPYLKKLGF
Sbjct: 312 ETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGF 371
Query: 129 NAAKDLSFMPCSG 141
N AKDL+FMPCSG
Sbjct: 372 NPAKDLTFMPCSG 384
|
|
| UNIPROTKB|Q6AYD5 Gspt1 "G1 to S phase transition 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 327
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 328 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLIPFLKKVGF 387
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 388 NPKKDIHFMPCSG 400
|
|
| UNIPROTKB|E1BYG8 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 259 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 318
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 319 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 378
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 379 NPKKDIHFMPCSG 391
|
|
| UNIPROTKB|F1NBR4 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 275 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 334
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 335 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 394
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 395 NPKKDIHFMPCSG 407
|
|
| UNIPROTKB|F6Q087 GSPT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 237 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 296
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 297 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 356
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 357 NPKKDIHFMPCSG 369
|
|
| UNIPROTKB|E2R0S8 GSPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 154 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 213
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 214 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 273
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 274 NPKKDIHFMPCSG 286
|
|
| UNIPROTKB|F1PM36 GSPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 190
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 191 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 250
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 251 NPKKDIHFMPCSG 263
|
|
| UNIPROTKB|H3BR35 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 137 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 196
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 197 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 256
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 257 NPKKDIHFMPCSG 269
|
|
| UNIPROTKB|J3KQG6 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 269 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 328
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 329 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 388
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 389 NPKKDIHFMPCSG 401
|
|
| UNIPROTKB|P15170 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/133 (81%), Positives = 125/133 (93%)
Query: 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
+++R+KGKTVEVGRAYFET++KHFTILDAPGHKSFVPNMIGG +QADLAVLVISARKGEF
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 190
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
ETGF++GGQTREHAMLAKTAGVKHL+VLINKMDDPTV WS RY ECK+K++P+LKK+GF
Sbjct: 191 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 250
Query: 129 NAAKDLSFMPCSG 141
N KD+ FMPCSG
Sbjct: 251 NPKKDIHFMPCSG 263
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7YZN9 | ERF3_DICDI | No assigned EC number | 0.6363 | 0.8397 | 0.2351 | yes | N/A |
| O74718 | ERF3_SCHPO | No assigned EC number | 0.6231 | 0.8782 | 0.2069 | yes | N/A |
| Q8R050 | ERF3A_MOUSE | No assigned EC number | 0.8195 | 0.8525 | 0.2091 | yes | N/A |
| Q9HGI6 | ERF3_DEBHA | No assigned EC number | 0.6090 | 0.8461 | 0.1883 | yes | N/A |
| P05453 | ERF3_YEAST | No assigned EC number | 0.6165 | 0.8525 | 0.1941 | yes | N/A |
| Q9HGI8 | ERF3_KLULA | No assigned EC number | 0.6090 | 0.8525 | 0.19 | yes | N/A |
| Q5R4B3 | ERF3B_PONAB | No assigned EC number | 0.8195 | 0.8525 | 0.2117 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 156 | |||
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 5e-88 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 7e-63 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 3e-51 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 1e-43 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 3e-43 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 3e-39 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 2e-38 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 4e-38 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 7e-32 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 8e-31 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 3e-30 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-28 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-27 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 3e-22 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 4e-22 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 1e-20 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 2e-19 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 2e-19 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 4e-19 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 9e-19 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 4e-18 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 9e-18 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 2e-17 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 3e-17 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 1e-13 | |
| cd01888 | 197 | cd01888, eIF2_gamma, Gamma subunit of initiation f | 1e-11 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 2e-11 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 1e-10 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 4e-10 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 5e-10 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 2e-09 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 4e-09 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 9e-09 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 3e-08 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 3e-08 | |
| PTZ00327 | 460 | PTZ00327, PTZ00327, eukaryotic translation initiat | 3e-08 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 9e-08 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-07 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-06 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 1e-05 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 6e-05 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 5e-04 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 6e-04 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 0.001 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 0.003 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.003 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 5e-88
Identities = 83/130 (63%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
RE+G T++VG A FET++ FTI+DAPGH+ FV NMI G +QAD+AVLV+SARKGEFE G
Sbjct: 59 RERGVTIDVGLAKFETEKYRFTIIDAPGHRDFVKNMITGASQADVAVLVVSARKGEFEAG 118
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
F++GGQTREHA+LA+T GVK L+V +NKMDD TV WS+ RY+E K K+ P+LKK+G+N
Sbjct: 119 FEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSPFLKKVGYN-P 177
Query: 132 KDLSFMPCSG 141
KD+ F+P SG
Sbjct: 178 KDVPFIPISG 187
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 7e-63
Identities = 71/134 (52%), Positives = 97/134 (72%), Gaps = 3/134 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
+++RE+G T++V + FETD+ +FTI+DAPGH+ FV NMI G +QAD+AVLV+ AR GE
Sbjct: 63 TKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE GF GGQTREHA LA+T G+K L+V +NKMD + W E R+ E ++ LK +G
Sbjct: 123 FEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS--WDEERFEEIVSEVSKLLKMVG 180
Query: 128 FNAAKDLSFMPCSG 141
+N KD+ F+P SG
Sbjct: 181 YN-PKDVPFIPISG 193
|
Length = 428 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-51
Identities = 71/134 (52%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T+++ FET + +FTI+DAPGH+ F+ NMI GT+QAD+A+LV+++ GE
Sbjct: 63 LKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G + GQTREHA+LA T GVK ++V INKMDD TV +S+ RY+E K ++ YLKK+G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG 182
Query: 128 FNAAKDLSFMPCSG 141
+N K + F+P SG
Sbjct: 183 YNPEK-VPFIPISG 195
|
Length = 446 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-43
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 16/146 (10%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+++RE+G T+++ FET ++ I+D PGH F MI G +QAD A+LV+ A +G
Sbjct: 43 KLKEERERGITIKIAAVSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEG 102
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL-PYLKK 125
QTREH +LAKT GV ++V INK+D +A E ++I L+K
Sbjct: 103 -------VMPQTREHLLLAKTLGVP-IIVFINKIDRVD----DAELEEVVEEISRELLEK 150
Query: 126 LGFNAAKDLSFMPCSGELEKN--PLL 149
GF + + +P S + LL
Sbjct: 151 YGFG-GETVPVVPGSALTGEGIDELL 175
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-43
Identities = 59/134 (44%), Positives = 84/134 (62%), Gaps = 8/134 (5%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+++RE+G T+++ FETD+ +FTI+D PGH+ FV NMI G +QAD AVLV++A
Sbjct: 62 LKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG 121
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
QTREH LA+T G+ L+V INKMD V + E RY E K+++ LK +G
Sbjct: 122 -----GVMPQTREHVFLARTLGINQLIVAINKMD--AVNYDEKRYEEVKEEVSKLLKMVG 174
Query: 128 FNAAKDLSFMPCSG 141
+ D+ F+P S
Sbjct: 175 YKPD-DIPFIPVSA 187
|
Length = 425 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-39
Identities = 59/134 (44%), Positives = 85/134 (63%), Gaps = 7/134 (5%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+++RE+G T++V FETD+ TI+D PGH+ F+ NMI G +QAD AVLV++ GE
Sbjct: 63 LKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE QTREHA LA+T G+ L+V INKMD +V + E + K ++ +KK+G
Sbjct: 123 FE----VQPQTREHAFLARTLGINQLIVAINKMD--SVNYDEEEFEAIKKEVSNLIKKVG 176
Query: 128 FNAAKDLSFMPCSG 141
+N + F+P S
Sbjct: 177 YN-PDTVPFIPISA 189
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-38
Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF T ++ F I D PGH+ + NM+ G + ADLA+L++ ARKG
Sbjct: 56 LQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV 115
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
E QTR H+ +A G++H+VV +NKMD V + E + E K L + LG
Sbjct: 116 LE-------QTRRHSYIASLLGIRHVVVAVNKMD--LVDYDEEVFEEIKADYLAFAASLG 166
Query: 128 FNAAKDLSFMPCS 140
D++F+P S
Sbjct: 167 IE---DITFIPIS 176
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 4e-38
Identities = 65/134 (48%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T+++ FET + + T++DAPGH+ F+ NMI GT+QAD AVL+I + G
Sbjct: 63 LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G + GQTREHA+LA T GVK ++ NKMD T +S+ARY+E ++ YLKK+G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 182
Query: 128 FNAAKDLSFMPCSG 141
+N K + F+P SG
Sbjct: 183 YNPDK-IPFVPISG 195
|
Length = 447 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-32
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L +RE+G T++V YF T+++ F I D PGH+ + NM G + ADLA+L++ ARKG
Sbjct: 64 LEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV 123
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
E QTR H+ +A G++H+VV +NKMD V +SE + L + +LG
Sbjct: 124 LE-------QTRRHSFIASLLGIRHVVVAVNKMD--LVDYSEEVFEAIVADYLAFAAQLG 174
Query: 128 FNAAKDLSFMPCSG 141
KD+ F+P S
Sbjct: 175 L---KDVRFIPISA 185
|
Length = 431 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 8e-31
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L +RE+G T++V YF T ++ F + D PGH+ + NM+ G + ADLA++++ ARKG
Sbjct: 82 LAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV 141
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
QTR H+ +A G++H+V+ +NKMD V + + ++E + KLG
Sbjct: 142 LT-------QTRRHSFIASLLGIRHVVLAVNKMD--LVDYDQEVFDEIVADYRAFAAKLG 192
Query: 128 FNAAKDLSFMPCSG 141
+ D++F+P S
Sbjct: 193 LH---DVTFIPISA 203
|
Length = 632 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-30
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 11/133 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF T+++ F I D PGH+ + NM G + DLA+L+I ARKG
Sbjct: 85 LQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV 144
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
+ QTR H+ +A G+KHLVV +NKMD V +SE + ++ L + ++L
Sbjct: 145 LD-------QTRRHSFIATLLGIKHLVVAVNKMD--LVDYSEEVFERIREDYLTFAEQLP 195
Query: 128 FNAAKDLSFMPCS 140
N D+ F+P S
Sbjct: 196 GN--LDIRFVPLS 206
|
Length = 474 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-28
Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF TD++ F + D PGH+ + NM G + ADLAVL++ ARKG
Sbjct: 58 LQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV 117
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
E QTR H+ +A G++H+V+ +NKMD V + E + K L + ++LG
Sbjct: 118 LE-------QTRRHSYIASLLGIRHVVLAVNKMD--LVDYDEEVFENIKKDYLAFAEQLG 168
Query: 128 FNAAKDLSFMPCSG 141
F +D++F+P S
Sbjct: 169 F---RDVTFIPLSA 179
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-27
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 15/148 (10%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+++RE+G T++ G FE ++ +D PGH+ F + G AQAD A+LV+ A +G
Sbjct: 39 TLKEERERGITIKTGVVEFEWPKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEG 98
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH +A AG ++V +NK+D E ++E +I LK +
Sbjct: 99 V-------EPQTREHLNIAL-AGGLPIIVAVNKID----RVGEEDFDEVLREIKELLKLI 146
Query: 127 GFNAAKDL--SFMPCSGEL-EKNPLLLG 151
GF K +P S E LL
Sbjct: 147 GFTFLKGKDVPIIPISALTGEGIEELLD 174
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-22
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ +ET +H+ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 47 KARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-- 104
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV ++VV +NK D
Sbjct: 105 -----QTREHLLLARQVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-22
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ +ET +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 57 KARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV ++VV +NK+D
Sbjct: 115 -----QTREHILLARQVGVPYIVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-20
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+E+G T+ +ET+++H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 57 KERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV +LVV +NK+D
Sbjct: 115 -----QTREHILLARQVGVPYLVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-19
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ +ET+ +H+ +D PGH +V NMI G AQ D A+LV+SA G
Sbjct: 55 EEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP 114
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV ++VV +NK D
Sbjct: 115 -------QTREHILLARQVGVPYIVVFLNKCD 139
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-19
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ +ET+++H+ +D PGH +V NMI G AQ D A+LV+SA G
Sbjct: 57 KARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINK---MDDP 103
QTREH +LA+ GV ++VV +NK +DD
Sbjct: 115 -----QTREHILLARQVGVPYIVVFLNKCDMVDDE 144
|
Length = 396 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-19
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ +ET +H+ +D PGH +V NMI G AQ D A+LV+SA G
Sbjct: 57 KARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINK---MDDP 103
QTREH +LA+ GV ++VV +NK +DD
Sbjct: 115 -----QTREHILLARQVGVPYIVVFLNKCDMVDDE 144
|
Length = 396 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 9e-19
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ +ET+ +H+ +D PGH +V NMI G AQ D A+LV+SA G
Sbjct: 57 KARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT+EH +LAK GV ++VV +NK D
Sbjct: 115 -----QTKEHILLAKQVGVPNIVVFLNKED 139
|
Length = 409 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-18
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++ +G T+ +ET ++H+ +D PGH +V NMI G AQ D +LV+SA G
Sbjct: 104 EEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 163
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT+EH +LA+ GV LVV +NK+D
Sbjct: 164 -------QTKEHILLARQVGVPSLVVFLNKVD 188
|
Length = 447 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 9e-18
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++R +G T+ +ET+ +H+ +D PGH +V NMI G AQ D A+LV+S G
Sbjct: 124 EERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP 183
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT+EH +LAK GV ++VV +NK D
Sbjct: 184 -------QTKEHILLAKQVGVPNMVVFLNKQD 208
|
Length = 478 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-17
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 8 LRQKREKGKTVEVGRAYFE-TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L +++++G T+++G AY + D K +D PGH+ FV NM+ G D +LV++A +G
Sbjct: 27 LPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAADEG 86
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH + + G+K +V++ K D + E R +++IL L
Sbjct: 87 IMP-------QTREHLEILELLGIKKGLVVLTKAD----LVDEDRLELVEEEILELLAGT 135
Query: 127 GFNAAK 132
A
Sbjct: 136 FLADAP 141
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-17
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L +++++G T+++G AYF +D PGH+ F+ N I G D A+LV+ A +G
Sbjct: 28 LPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV 87
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
QT EH + G+ H +V+I K D +E + + L
Sbjct: 88 MT-------QTGEHLAVLDLLGIPHTIVVITKAD----RVNEEEIKRTEMFMKQILNSYI 136
Query: 128 FN 129
F
Sbjct: 137 FL 138
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L +++++G T+++G Y + + +D PGH F+ N++ G D A+LV++A +G
Sbjct: 28 LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG- 86
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL 120
QT EH ++ G+K+ ++++ K D EAR + +IL
Sbjct: 87 ------LMAQTGEHLLILDLLGIKNGIIVLTKADRVD----EARIEQKIKQIL 129
|
Length = 447 |
| >gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-11
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+H + +D PGH+ + M+ G A D A+L+I+A + QT EH + G
Sbjct: 77 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAA-----NEPCPQ-PQTSEHLAALEIMG 130
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLK-KLGFNAAKDLSFMPCSGELEKN 146
+KH+++L NK+D V +A N ++I ++K + NA +P S +L+ N
Sbjct: 131 LKHIIILQNKID--LVKEEQALEN--YEQIKEFVKGTIAENAP----IIPISAQLKYN 180
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 8 LRQKREKGKTVEVGRAYF-ETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L +++++G T+++G AY+ + D + +D PGH+ F+ NM+ G D A+LV++ G
Sbjct: 28 LPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG 87
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH + + G L V + K D V EAR E + ++ L++
Sbjct: 88 VM-------AQTREHLAILQLTGNPMLTVALTKAD--RV--DEARIAEVRRQVKAVLREY 136
Query: 127 GFNAA 131
GF A
Sbjct: 137 GFAEA 141
|
Length = 614 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 33 TILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92
+ +DAPGH++ + M+ G A D A+LVI+A + + QTREH M + G+K+
Sbjct: 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQP------QTREHLMALEIIGIKN 136
Query: 93 LVVLINKMD 101
+V++ NK+D
Sbjct: 137 IVIVQNKID 145
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 34 ILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93
+DAPGH++ + M+ G A D A+LVI+A + + QT+EH M G+K++
Sbjct: 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQP------QTKEHLMALDIIGIKNI 142
Query: 94 VVLINKMDDPTVMWSEAR--YNECKD 117
V++ NK+D V A Y + K+
Sbjct: 143 VIVQNKID--LVSKERALENYEQIKE 166
|
Length = 411 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-10
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 22/107 (20%)
Query: 9 RQKREKGKTVEVGRAYFETDRK--------------HFTILDAPGHKSFVPNMIGGTAQA 54
Q +E+G T+++G + FE D+ T++D PGH S + +IGG
Sbjct: 33 PQSQERGITLDLGFSSFEVDKPKHLEDNENPQIENYQITLVDCPGHASLIRTIIGGAQII 92
Query: 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
DL +LV+ A+KG +T QT E ++ + L+V++NK+D
Sbjct: 93 DLMLLVVDAKKG-IQT------QTAECLVIGELLCKP-LIVVLNKID 131
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88
+ + +DAPGH++ + M+ G A D A+LVI+A + + QTREH M +
Sbjct: 85 VRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQP------QTREHLMALEII 138
Query: 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLK 124
G+K+++++ NK+D + S R E ++I ++K
Sbjct: 139 GIKNIIIVQNKID----LVSRERALENYEQIKEFVK 170
|
Length = 415 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-09
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 22/126 (17%)
Query: 22 RAYF---ETDRKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARKGEFETGFDRG-- 75
AY + T +D PGH++F NM G + D+A+LV++A D G
Sbjct: 38 GAYQVPIDVKIPGITFIDTPGHEAFT-NMRARGASVTDIAILVVAA---------DDGVM 87
Query: 76 GQTREHAMLAKTAGVKHLVVLINKMD-DPTVMWSEARYNECKDKILPYLKKLGFNAAKDL 134
QT E AK A V ++V INK+D R ++ ++ G D+
Sbjct: 88 PQTIEAINHAKAANVP-IIVAINKIDKPYGTEADPERVKNELSELGLVGEEWG----GDV 142
Query: 135 SFMPCS 140
S +P S
Sbjct: 143 SIVPIS 148
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-09
Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 10 QKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF 68
Q G T +G + E D K T LD PGH++F G D+ VLV++A G
Sbjct: 114 QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM 173
Query: 69 ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128
QT E AK A V ++V INK+D P D++ L + G
Sbjct: 174 P-------QTIEAISHAKAANVP-IIVAINKIDKPEAN---------PDRVKQELSEYGL 216
Query: 129 NAAK---DLSFMPCS 140
D F+P S
Sbjct: 217 VPEDWGGDTIFVPVS 231
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKH-FTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65
W+ Q++E+G T+ + ++D PGH F + D AV+V+ A +
Sbjct: 52 WMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE 111
Query: 66 GE---FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
G ET + A GV ++ +NKMD
Sbjct: 112 GVEPQTETVWR----------QADKYGVPRILF-VNKMD 139
|
Length = 697 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-08
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 32/150 (21%)
Query: 15 GKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARKGEFET 70
G T +G D T +D PGH++F M G + D+A+LV++A G
Sbjct: 37 GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT-AMRARGASVTDIAILVVAADDG---- 91
Query: 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130
QT E AK AGV +VV INK+D P DK+ L++ G
Sbjct: 92 ---VMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN---------PDKVKQELQEYGLVP 138
Query: 131 AK---DLSFMPCSG-------ELEKNPLLL 150
+ D+ F+P S EL + LLL
Sbjct: 139 EEWGGDVIFVPVSAKTGEGIDELLELILLL 168
|
Length = 509 |
| >gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89
+H + +D PGH + M+ G A D A+L+I+A + + QT EH +
Sbjct: 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQP------QTSEHLAAVEIMK 170
Query: 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146
+KH+++L NK+D + EA+ + ++I ++K A + +P S +L+ N
Sbjct: 171 LKHIIILQNKID----LVKEAQAQDQYEEIRNFVKG---TIADNAPIIPISAQLKYN 220
|
Length = 460 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-08
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
+++++ ++E A E + ++D PG+ FV + D A++V+ A+ G
Sbjct: 44 EEKKRKMSIETSVAPLEWNGHKINLIDTPGYADFVGETLSALRAVDAALIVVEAQSG--- 100
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
T + A + ++ INKMD
Sbjct: 101 ----VEVGTEKVWEFLDDAKLPRIIF-INKMD 127
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-07
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFE 69
++RE+G ++ E ++D PGH F + D AV+V+ A G
Sbjct: 40 EERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG--- 96
Query: 70 TGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT A+ GV ++ +NKMD
Sbjct: 97 ----VEPQTETVWRQAEKYGVPRIIF-VNKMD 123
|
Length = 668 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-06
Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 33/95 (34%)
Query: 23 AY-FETDRKHFTILDAPGHKSFVPNMIGGT------AQA-DLAVLVISARKGEFETGFDR 74
AY ET+ T LD PGH++F T AQ D+ VLV++A D
Sbjct: 288 AYQVETNGGKITFLDTPGHEAF-------TAMRARGAQVTDIVVLVVAA---------DD 331
Query: 75 G--GQTRE---HAMLAKTAGVKHLVVLINKMDDPT 104
G QT E H AK AGV ++V INK+D P
Sbjct: 332 GVMPQTIEAINH---AKAAGVP-IIVAINKIDKPG 362
|
Length = 746 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ Q++E+G T+E + D ++D PGH F + D AV+V A G
Sbjct: 50 WMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG 109
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT A G+ L+ INKMD
Sbjct: 110 -------VQPQTETVWRQADRYGIPRLIF-INKMD 136
|
Length = 687 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
R++G T+ A F+ + I+D PGH F+ + + D A+LVISA +G
Sbjct: 46 RQRGITIFSAVASFQWEDTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV---- 101
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTR L + + ++ +NK+D
Sbjct: 102 ---QAQTRILFRLLRKLNIP-TIIFVNKID 127
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G +V FE +LD PGH+ F + D AV+VI A KG
Sbjct: 48 WMEIEKQRGISVTSSVMQFEYKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG 107
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPT 104
E QTR+ + + G+ ++ INK+D
Sbjct: 108 -VEP------QTRKLFEVCRLRGIP-IITFINKLDREG 137
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G ++ F +LD PGH+ F + D ++VI A KG
Sbjct: 57 WMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG 116
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVL--INKMDDP 103
ET +TR+ L + ++ + +NK+D
Sbjct: 117 -VET------RTRK---LMEVTRLRDTPIFTFMNKLDRD 145
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 18/82 (21%)
Query: 27 TDRKH----FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-- 80
D K I+D PGH +F+ + D VLV+ +G T
Sbjct: 64 EDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTS-------VTERLI 116
Query: 81 -HAMLAKTAGVKHLVVLINKMD 101
HA+ +V++INK+D
Sbjct: 117 RHAIQEG----LPMVLVINKID 134
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
W+ ++++G +V F+ +LD PGH+ F + D AV+VI A KG
Sbjct: 58 WMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG 117
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVL--INKMD 101
E QT + L + ++ + + INK+D
Sbjct: 118 -IEP------QTLK---LFEVCRLRDIPIFTFINKLD 144
|
Length = 528 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.003
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 12 REKGKTVE--VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTA-----QADLAVLVISAR 64
G T + V + + ++D PG F A ADL +LV+ +
Sbjct: 27 DVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDST 86
Query: 65 KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103
E + + G+ ++V NK+D
Sbjct: 87 DRES---EED--AKLLILRRLRKEGIPIILV-GNKIDLL 119
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.97 | |
| KOG0458|consensus | 603 | 99.96 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.96 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.96 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.95 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.94 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.93 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.93 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.93 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.93 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.92 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.92 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.91 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.9 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.9 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.9 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.9 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.9 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.89 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.89 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.89 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.89 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.89 | |
| KOG0459|consensus | 501 | 99.89 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.89 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.89 | |
| KOG0462|consensus | 650 | 99.88 | ||
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.88 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.88 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.88 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.87 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.87 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.86 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.86 | |
| KOG0460|consensus | 449 | 99.85 | ||
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.85 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.85 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.85 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.85 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.85 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.84 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.83 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.82 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.82 | |
| KOG0084|consensus | 205 | 99.82 | ||
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.81 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.8 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.8 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.79 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.79 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.78 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.78 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.78 | |
| KOG0092|consensus | 200 | 99.78 | ||
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.78 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.78 | |
| KOG1145|consensus | 683 | 99.77 | ||
| KOG0098|consensus | 216 | 99.76 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.76 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.76 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.76 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.76 | |
| KOG0078|consensus | 207 | 99.75 | ||
| PTZ00099 | 176 | rab6; Provisional | 99.75 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.74 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.74 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.74 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.73 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.73 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.72 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.72 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.72 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.72 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.72 | |
| KOG0094|consensus | 221 | 99.71 | ||
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.71 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.71 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.71 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.7 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.7 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.7 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.69 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.69 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.69 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.69 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.69 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.68 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.68 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.68 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.68 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.68 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.68 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.68 | |
| KOG0086|consensus | 214 | 99.68 | ||
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.68 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.68 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.67 | |
| KOG0394|consensus | 210 | 99.67 | ||
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.67 | |
| KOG0465|consensus | 721 | 99.67 | ||
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.67 | |
| KOG0095|consensus | 213 | 99.67 | ||
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.67 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.67 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.66 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.66 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.66 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.66 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.66 | |
| KOG0083|consensus | 192 | 99.66 | ||
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.66 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.65 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.65 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.65 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.65 | |
| KOG0464|consensus | 753 | 99.65 | ||
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.65 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.65 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.65 | |
| KOG0087|consensus | 222 | 99.65 | ||
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.65 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.64 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.64 | |
| KOG0093|consensus | 193 | 99.64 | ||
| KOG0461|consensus | 522 | 99.64 | ||
| KOG0080|consensus | 209 | 99.64 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.64 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.64 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.64 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.64 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.63 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.63 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.63 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.63 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.63 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.63 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.63 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.63 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.63 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.63 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.63 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.62 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.62 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.62 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.62 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.62 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.62 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.62 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.62 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.62 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.62 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.62 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.62 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.61 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.61 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.61 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.61 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.61 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.61 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.61 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.61 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.6 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.6 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.6 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.6 | |
| KOG0081|consensus | 219 | 99.6 | ||
| KOG0467|consensus | 887 | 99.6 | ||
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.6 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.6 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.59 | |
| KOG0088|consensus | 218 | 99.59 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.59 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.59 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.59 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.59 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.59 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.58 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.58 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.58 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.58 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.57 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.56 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.56 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.56 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.56 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.56 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.56 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.56 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.56 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.56 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.55 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.55 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.55 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.55 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.55 | |
| KOG0079|consensus | 198 | 99.54 | ||
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.54 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.54 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.53 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.53 | |
| KOG1144|consensus | 1064 | 99.53 | ||
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.53 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.53 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.53 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.53 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.52 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.52 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.52 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.52 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.52 | |
| KOG0468|consensus | 971 | 99.52 | ||
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.52 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.52 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.52 | |
| KOG0097|consensus | 215 | 99.52 | ||
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.51 | |
| KOG0073|consensus | 185 | 99.51 | ||
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.51 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.51 | |
| KOG0075|consensus | 186 | 99.51 | ||
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.51 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.5 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.5 | |
| KOG0091|consensus | 213 | 99.49 | ||
| KOG0070|consensus | 181 | 99.49 | ||
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.48 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.48 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.47 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.47 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.47 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.47 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.46 | |
| KOG0076|consensus | 197 | 99.46 | ||
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.46 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.46 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.46 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.45 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.45 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.45 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.45 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.45 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.45 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.45 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.44 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.44 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.43 | |
| KOG0469|consensus | 842 | 99.38 | ||
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.37 | |
| KOG0071|consensus | 180 | 99.33 | ||
| KOG0466|consensus | 466 | 99.32 | ||
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.31 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.3 | |
| KOG0090|consensus | 238 | 99.3 | ||
| KOG0072|consensus | 182 | 99.3 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.29 | |
| KOG0052|consensus | 391 | 99.29 | ||
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.29 | |
| KOG1143|consensus | 591 | 99.29 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.28 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.27 | |
| KOG0395|consensus | 196 | 99.27 | ||
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.25 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.25 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.24 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.22 | |
| PRK13768 | 253 | GTPase; Provisional | 99.16 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.14 | |
| KOG1423|consensus | 379 | 99.13 | ||
| KOG0393|consensus | 198 | 99.11 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.1 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.09 | |
| KOG0463|consensus | 641 | 99.09 | ||
| KOG0074|consensus | 185 | 99.05 | ||
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.04 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.02 | |
| KOG1489|consensus | 366 | 99.02 | ||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 98.99 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.99 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.97 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.96 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.96 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.95 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.94 | |
| KOG1191|consensus | 531 | 98.94 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.9 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.88 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.84 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.83 | |
| KOG4252|consensus | 246 | 98.82 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.81 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 98.8 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.79 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 98.76 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 98.71 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.71 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.7 | |
| KOG0096|consensus | 216 | 98.69 | ||
| KOG1673|consensus | 205 | 98.69 | ||
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.68 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.66 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.65 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.6 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.59 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.57 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.56 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.54 | |
| KOG2486|consensus | 320 | 98.53 | ||
| KOG0077|consensus | 193 | 98.5 | ||
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.47 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.43 | |
| KOG1532|consensus | 366 | 98.42 | ||
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.37 | |
| KOG1490|consensus | 620 | 98.37 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.36 | |
| KOG4423|consensus | 229 | 98.3 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.29 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.25 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.18 | |
| KOG0082|consensus | 354 | 98.16 | ||
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.1 | |
| KOG3886|consensus | 295 | 98.09 | ||
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.06 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.03 | |
| KOG1954|consensus | 532 | 97.99 | ||
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 97.99 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 97.92 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.85 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.75 | |
| KOG3883|consensus | 198 | 97.71 | ||
| KOG1707|consensus | 625 | 97.71 | ||
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.66 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.63 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.62 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 97.59 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 97.57 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.52 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.5 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 97.46 | |
| KOG0099|consensus | 379 | 97.46 | ||
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 97.36 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.28 | |
| KOG0410|consensus | 410 | 97.28 | ||
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.24 | |
| KOG0447|consensus | 980 | 97.18 | ||
| KOG1486|consensus | 364 | 97.16 | ||
| KOG0448|consensus | 749 | 97.13 | ||
| KOG1547|consensus | 336 | 97.05 | ||
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.05 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.03 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 96.98 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 96.98 | |
| KOG1424|consensus | 562 | 96.94 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 96.94 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.93 | |
| KOG2484|consensus | 435 | 96.92 | ||
| PTZ00258 | 390 | GTP-binding protein; Provisional | 96.88 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.8 | |
| KOG3887|consensus | 347 | 96.79 | ||
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 96.76 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.71 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 96.68 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.65 | |
| KOG3905|consensus | 473 | 96.6 | ||
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 96.58 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 96.55 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.5 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.49 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.43 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 96.36 | |
| KOG2655|consensus | 366 | 96.32 | ||
| cd03112 | 158 | CobW_like The function of this protein family is u | 96.3 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.29 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 96.12 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.11 | |
| KOG1487|consensus | 358 | 96.09 | ||
| PHA02518 | 211 | ParA-like protein; Provisional | 95.87 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 95.83 | |
| KOG1534|consensus | 273 | 95.61 | ||
| CHL00175 | 281 | minD septum-site determining protein; Validated | 95.55 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 95.54 | |
| KOG2423|consensus | 572 | 95.46 | ||
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.45 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 95.42 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 95.39 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 95.35 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.29 | |
| KOG2485|consensus | 335 | 95.22 | ||
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.1 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.02 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.76 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 94.74 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 94.57 | |
| KOG0780|consensus | 483 | 94.54 | ||
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 94.32 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 93.87 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 93.82 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 93.73 | |
| PF08438 | 109 | MMR_HSR1_C: GTPase of unknown function C-terminal; | 93.41 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 93.39 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.36 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 92.94 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 92.86 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 92.6 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 92.36 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 92.33 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 92.26 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 92.11 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.87 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 91.31 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 91.24 | |
| COG4963 | 366 | CpaE Flp pilus assembly protein, ATPase CpaE [Intr | 91.17 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 91.17 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 91.14 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 90.85 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 90.85 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, | 90.57 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 90.38 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.34 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 90.21 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 89.6 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 89.29 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 89.21 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 89.21 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 89.17 | |
| PRK10037 | 250 | cell division protein; Provisional | 89.03 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 88.95 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 88.94 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 88.08 | |
| KOG0085|consensus | 359 | 87.71 | ||
| KOG3022|consensus | 300 | 87.71 | ||
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 87.59 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 87.16 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 86.43 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 86.32 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 86.11 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 85.12 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 84.1 | |
| PRK13505 | 557 | formate--tetrahydrofolate ligase; Provisional | 83.25 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 82.23 | |
| KOG1533|consensus | 290 | 82.13 | ||
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 81.94 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 81.57 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 81.54 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 80.94 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 80.73 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 80.57 | |
| PF05014 | 113 | Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer | 80.42 |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=199.52 Aligned_cols=144 Identities=49% Similarity=0.796 Sum_probs=136.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+++|||||+|++.....|+.+.+.|+|+|+|||++|.+.++..+.+||++|||||+..+.|+++|....|+.+++..
T Consensus 60 lD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 60 LDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL 139 (428)
T ss_pred ecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++..|+.++|+++||||++ +|++.+++++++++..+.+..|+.+. +++|||+||.+|.|+.+..
T Consensus 140 a~tlGi~~lIVavNKMD~v--~wde~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLV--SWDEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHhcCCceEEEEEEccccc--ccCHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccC
Confidence 9999999999999999965 59999999999999998889999765 7899999999999998765
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=192.28 Aligned_cols=146 Identities=47% Similarity=0.824 Sum_probs=136.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+.+||+||+|++.....|+.+.+.++|+|+|||.+|+..++....++|+++||+|++.+.|+.+|+...|+.++...
T Consensus 230 LDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~l 309 (603)
T KOG0458|consen 230 LDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALL 309 (603)
T ss_pred eccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLGIE 153 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~~ 153 (156)
++..|+.++|+++|||| ...|++.++++++.++..++ +..||... ++.|||+|+++|+|+-...++
T Consensus 310 lr~Lgi~qlivaiNKmD--~V~Wsq~RF~eIk~~l~~fL~~~~gf~es-~v~FIPiSGl~GeNL~k~~~~ 376 (603)
T KOG0458|consen 310 LRSLGISQLIVAINKMD--LVSWSQDRFEEIKNKLSSFLKESCGFKES-SVKFIPISGLSGENLIKIEQE 376 (603)
T ss_pred HHHcCcceEEEEeeccc--ccCccHHHHHHHHHHHHHHHHHhcCcccC-CcceEecccccCCcccccccc
Confidence 99999999999999999 56899999999999999999 77788543 679999999999999876554
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=189.69 Aligned_cols=146 Identities=49% Similarity=0.774 Sum_probs=133.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|+++|+|++.....++++++.++|+|||||++|...+..++..+|++++|+|+..|.++..|....++.+++..
T Consensus 60 ~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~ 139 (446)
T PTZ00141 60 LDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL 139 (446)
T ss_pred hcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999877788777899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...|+|++|+++||||+....+++.+++++.+++..++...++... ++++||+||++|+|+.+.+
T Consensus 140 ~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~~~~ 205 (446)
T PTZ00141 140 AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPE-KVPFIPISGWQGDNMIEKS 205 (446)
T ss_pred HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcc-cceEEEeecccCCCcccCC
Confidence 99999998889999999766667788899999999999999888543 6899999999999997643
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=189.41 Aligned_cols=147 Identities=44% Similarity=0.684 Sum_probs=131.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++||++|+|++.....++++++.++++|||||++|.+.+..++..+|++|+|+|+..|.++..+....++.+++.
T Consensus 59 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~ 138 (447)
T PLN00043 59 VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHAL 138 (447)
T ss_pred hhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999876777777789999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+++||||+....+...++.++.+++..+++..|+... +++|+|+||++|+|+.+..
T Consensus 139 ~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~-~~~~ipiSa~~G~ni~~~~ 205 (447)
T PLN00043 139 LAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPD-KIPFVPISGFEGDNMIERS 205 (447)
T ss_pred HHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcc-cceEEEEeccccccccccc
Confidence 999999987899999999765556677899999999999999998643 5799999999999997543
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=167.55 Aligned_cols=148 Identities=57% Similarity=0.934 Sum_probs=121.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+.+.+..+++||||||.+|...+..+++.+|++++|+|++++..+..|....+..+++.
T Consensus 51 ~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~ 130 (219)
T cd01883 51 VLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL 130 (219)
T ss_pred hhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999988643333433566777777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+.+++++++||+|+....+....+..+.+++...++..++... +++++++||++|+|+++-++
T Consensus 131 ~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~ii~iSA~tg~gi~~~~~ 198 (219)
T cd01883 131 LARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPK-DVPFIPISGLTGDNLIEKSE 198 (219)
T ss_pred HHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcC-CceEEEeecCcCCCCCcCCC
Confidence 676677665899999999875444455577777888877888776432 57999999999999986653
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=160.71 Aligned_cols=134 Identities=31% Similarity=0.453 Sum_probs=117.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+++++.+++++|||||.+|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 39 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~~~~~~~ 111 (195)
T cd01884 39 EIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP-------MPQTREHLL 111 (195)
T ss_pred cccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999886 478888999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.+...++|++|+++||+|+.. .....+.+++++..+++..++.+. +++++|+||++|.|+.
T Consensus 112 ~~~~~~~~~iIvviNK~D~~~---~~~~~~~~~~~i~~~l~~~g~~~~-~v~iipiSa~~g~n~~ 172 (195)
T cd01884 112 LARQVGVPYIVVFLNKADMVD---DEELLELVEMEVRELLSKYGFDGD-NTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHcCCCcEEEEEeCCCCCC---cHHHHHHHHHHHHHHHHHhccccc-CCeEEEeeCccccCCC
Confidence 999899887789999999852 233456677888888998888643 6899999999999975
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=156.55 Aligned_cols=134 Identities=32% Similarity=0.469 Sum_probs=114.6
Q ss_pred ccccHHHhhcCceeeeeeEEEE--eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE--TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+..++|+++|+|+......+. ..++.++++|||||.+|.+.+..+++.+|++|+|||+.+|. ..++.+++
T Consensus 43 ~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-------~~~~~~~l 115 (188)
T PF00009_consen 43 LDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-------QPQTEEHL 115 (188)
T ss_dssp HHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-------THHHHHHH
T ss_pred ccccchhhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccc-------cccccccc
Confidence 5778999999999999999999 99999999999999999999999999999999999999887 57889999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH-HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL-PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...++| +++++||+|+. ...+.+..+++. .+++..++.....+|++++||++|.|++.|.
T Consensus 116 ~~~~~~~~p-~ivvlNK~D~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 116 KILRELGIP-IIVVLNKMDLI-----EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELL 179 (188)
T ss_dssp HHHHHTT-S-EEEEEETCTSS-----HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHH
T ss_pred ccccccccc-eEEeeeeccch-----hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHH
Confidence 999999999 89999999986 334555566665 5556666643225799999999999998764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=167.04 Aligned_cols=135 Identities=38% Similarity=0.623 Sum_probs=124.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|-+.+|||.|+|++..+..|..+.++|++.|||||+.|.+++......||.+|++||+..|+ ..|+..|-..
T Consensus 61 vDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-------l~QTrRHs~I 133 (431)
T COG2895 61 VDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-------LEQTRRHSFI 133 (431)
T ss_pred hhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-------HHHhHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999998 5889999888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...|++|+++++|||||. +++++.++++.+.+..+.+++++. ...+||+||+.|.|+-.-+
T Consensus 134 ~sLLGIrhvvvAVNKmDLv--dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s 195 (431)
T COG2895 134 ASLLGIRHVVVAVNKMDLV--DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKS 195 (431)
T ss_pred HHHhCCcEEEEEEeeeccc--ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCcccccc
Confidence 8889999999999999965 678889999999999999999985 4589999999999986543
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=171.92 Aligned_cols=136 Identities=38% Similarity=0.634 Sum_probs=118.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|++||+|++.....+.+++.+++|+|||||++|.+.+..++..+|++++|+|+..|. ..++.+++.
T Consensus 54 ~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~-------~~qt~~~~~ 126 (406)
T TIGR02034 54 LVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV-------LEQTRRHSY 126 (406)
T ss_pred eccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------ccccHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999987 478888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+++++|+++||+|+.. +....++++++++..+++..++. +.+++|+||++|+|++.++
T Consensus 127 ~~~~~~~~~iivviNK~D~~~--~~~~~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 127 IASLLGIRHVVLAVNKMDLVD--YDEEVFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred HHHHcCCCcEEEEEEeccccc--chHHHHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCcccc
Confidence 888888887889999999753 33455677777888777777763 5689999999999999765
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=169.99 Aligned_cols=139 Identities=43% Similarity=0.677 Sum_probs=117.0
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC--CccccccCCCcchHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK--GEFETGFDRGGQTREH 81 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~--~~~~~~~~~~~~~~~~ 81 (156)
.+|..++|+++|+|++.....+.+++++++|||||||++|.+.+..+++.+|++++|+|+++ +. ..++.++
T Consensus 58 ~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~ 130 (425)
T PRK12317 58 VMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREH 130 (425)
T ss_pred hhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHH
Confidence 35888999999999999999999999999999999999999988888999999999999987 54 4667778
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+..+...+.+++++++||+|+.. +....+..+.+++..+++..++... .++++++||++|+|+++++.
T Consensus 131 ~~~~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~~~i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 131 VFLARTLGINQLIVAINKMDAVN--YDEKRYEEVKEEVSKLLKMVGYKPD-DIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHcCCCeEEEEEEcccccc--ccHHHHHHHHHHHHHHHHhhCCCcC-cceEEEeecccCCCcccccc
Confidence 77777778766899999999863 2344566677778888887776432 47899999999999998764
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=153.27 Aligned_cols=137 Identities=37% Similarity=0.586 Sum_probs=111.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|..++|+++|+|++.....+.+++.++.+|||||+.+|...+..+++.+|++++|+|++.+. ..+....+.
T Consensus 51 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~-------~~~~~~~~~ 123 (208)
T cd04166 51 LVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGV-------LEQTRRHSY 123 (208)
T ss_pred eccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc-------cHhHHHHHH
Confidence 3688999999999999999999999999999999999999888889999999999999998875 345555666
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+.|++|+++||+|+... ....+..+.+++..+++.+++. ..+++++||++|.|+.+.+.
T Consensus 124 ~~~~~~~~~iIvviNK~D~~~~--~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 124 ILSLLGIRHVVVAVNKMDLVDY--SEEVFEEIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHHHcCCCcEEEEEEchhcccC--CHHHHHHHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC
Confidence 6666676657889999997532 2334556667777777777652 35799999999999998764
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=168.34 Aligned_cols=138 Identities=38% Similarity=0.587 Sum_probs=117.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|++||+|++.....+.+++.+++|||||||++|.+.+..++..+|++++|+|+..|. ..++.+++.
T Consensus 81 ~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~-------~~qt~~~~~ 153 (474)
T PRK05124 81 LVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV-------LDQTRRHSF 153 (474)
T ss_pred hccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cccchHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999887 367788887
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+++++|+++||+|+.. ++...+.++++++..+++..++. ...+++|+||++|.|++.++.
T Consensus 154 l~~~lg~~~iIvvvNKiD~~~--~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~ 218 (474)
T PRK05124 154 IATLLGIKHLVVAVNKMDLVD--YSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE 218 (474)
T ss_pred HHHHhCCCceEEEEEeecccc--chhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc
Confidence 787778776899999999753 34455777777787777766632 257899999999999998764
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=163.79 Aligned_cols=141 Identities=41% Similarity=0.662 Sum_probs=116.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|+.++|+++|+|++.....+.+++..++|||||||++|.+.+..++..+|++++|+|++++.+ ....++.+++..
T Consensus 60 ~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~----~~~~~t~~~~~~ 135 (426)
T TIGR00483 60 MDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF----EVQPQTREHAFL 135 (426)
T ss_pred hccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc----ccCCchHHHHHH
Confidence 6888999999999999999999999999999999999999999999999999999999988731 113566666666
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+.+++|+++||+|+.. +....+++.++++..+++..++... .++++++||++|.|++++..
T Consensus 136 ~~~~~~~~iIVviNK~Dl~~--~~~~~~~~~~~ei~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 136 ARTLGINQLIVAINKMDSVN--YDEEEFEAIKKEVSNLIKKVGYNPD-TVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHcCCCeEEEEEEChhccC--ccHHHHHHHHHHHHHHHHHcCCCcc-cceEEEeecccccccccccc
Confidence 66667666899999999853 3345567778888888888876432 57999999999999987653
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=162.42 Aligned_cols=133 Identities=32% Similarity=0.494 Sum_probs=116.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|++++|+++|+|++.....+.+++.++++||||||++|.+.+..++..+|++++|+|+.+|. ..++.+++.
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-------~~qt~e~~~ 190 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-------MPQTKEHIL 190 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999987 488999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++.. .+++++|+||++|.++
T Consensus 191 ~~~~~gi~~iIvvvNK~Dl~~---~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 191 LAKQVGVPNMVVFLNKQDQVD---DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEA 250 (478)
T ss_pred HHHHcCCCeEEEEEecccccC---HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccc
Confidence 999999997788999999863 23346667778889999888754 3689999999999764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=160.63 Aligned_cols=134 Identities=34% Similarity=0.508 Sum_probs=116.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|++++|+++|+|++.....+.+++.++.|+|||||.+|.+.+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~~~~~ 121 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTKEHIL 121 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++.. +.++++++||++|.|+-
T Consensus 122 ~~~~~g~~~iIvvvNK~D~~~---~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~ 182 (409)
T CHL00071 122 LAKQVGVPNIVVFLNKEDQVD---DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEAL 182 (409)
T ss_pred HHHHcCCCEEEEEEEccCCCC---HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhccccc
Confidence 988899997788999999863 23345667778888888888754 35899999999998764
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=159.55 Aligned_cols=131 Identities=33% Similarity=0.487 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++++++|+|||||++|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~-------~~~t~~~~~ 121 (394)
T PRK12736 49 SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-------MPQTREHIL 121 (394)
T ss_pred hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH
Confidence 3688899999999999999999888999999999999999999999999999999999999887 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
.+...++|++|+++||+|+.. ....++.+++++..+++..++... ..+++++||++|.
T Consensus 122 ~~~~~g~~~~IvviNK~D~~~---~~~~~~~i~~~i~~~l~~~~~~~~-~~~ii~vSa~~g~ 179 (394)
T PRK12736 122 LARQVGVPYLVVFLNKVDLVD---DEELLELVEMEVRELLSEYDFPGD-DIPVIRGSALKAL 179 (394)
T ss_pred HHHHcCCCEEEEEEEecCCcc---hHHHHHHHHHHHHHHHHHhCCCcC-CccEEEeeccccc
Confidence 999899997788999999863 223445566778888888887543 5799999999984
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=159.06 Aligned_cols=131 Identities=33% Similarity=0.457 Sum_probs=111.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++++++|||||||++|...+..++.++|++++|+|+.++. ..++.+++.
T Consensus 49 ~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~e~l~ 121 (394)
T TIGR00485 49 QIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP-------MPQTREHIL 121 (394)
T ss_pred cccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 4688899999999999999999888899999999999999999999999999999999999886 478889999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
.+...++|++|+++||+|+... ....+.+++++..+++..++... +++++++||++|.
T Consensus 122 ~~~~~gi~~iIvvvNK~Dl~~~---~~~~~~~~~~i~~~l~~~~~~~~-~~~ii~vSa~~g~ 179 (394)
T TIGR00485 122 LARQVGVPYIVVFLNKCDMVDD---EELLELVEMEVRELLSEYDFPGD-DTPIIRGSALKAL 179 (394)
T ss_pred HHHHcCCCEEEEEEEecccCCH---HHHHHHHHHHHHHHHHhcCCCcc-CccEEECcccccc
Confidence 8888899966679999998631 22345566678888888776432 4799999999985
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=166.16 Aligned_cols=137 Identities=34% Similarity=0.588 Sum_probs=117.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|.+++|+++|+|++.....+.+++.+++|+|||||++|.+.+..++..+|++++|+|+..+. ..++.+++.
T Consensus 78 ~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~-------~~~t~e~~~ 150 (632)
T PRK05506 78 LVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV-------LTQTRRHSF 150 (632)
T ss_pred eccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc-------cccCHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999887 467888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+...+++++|+++||+|+.. +....++++.+++..+++..++. +.+++|+||++|.|++.+..
T Consensus 151 ~~~~~~~~~iivvvNK~D~~~--~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~ 214 (632)
T PRK05506 151 IASLLGIRHVVLAVNKMDLVD--YDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA 214 (632)
T ss_pred HHHHhCCCeEEEEEEeccccc--chhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc
Confidence 888788776889999999753 34445677777787777777772 46899999999999987553
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=156.06 Aligned_cols=133 Identities=33% Similarity=0.455 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+..++.+++|+|||||++|.+.+..++..+|++++|+|+.++. ..++.+++.
T Consensus 49 ~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-------~~qt~e~l~ 121 (396)
T PRK12735 49 QIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHIL 121 (396)
T ss_pred hccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chhHHHHHH
Confidence 4688899999999999999999989999999999999999999999999999999999999876 477888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
.+...++|++++++||+|+.. ....++.+++++..+++..++.. .+.+++++||++|.|.
T Consensus 122 ~~~~~gi~~iivvvNK~Dl~~---~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 122 LARQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEG 181 (396)
T ss_pred HHHHcCCCeEEEEEEecCCcc---hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccC
Confidence 888889996556899999863 23345566677888888887743 2579999999999764
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=155.24 Aligned_cols=132 Identities=33% Similarity=0.477 Sum_probs=112.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+.++|+++|+|++.....+.+++.+++|+|||||++|...+..++..+|++++|+|+..+. ..++.+++.
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~~~~ 121 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHIL 121 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chHHHHHHH
Confidence 4688899999999999999999889999999999999999999999999999999999999886 478888999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
.+...++|.+|+++||+|+.. ....++.+++++..++...++.+ .+.+++++||++|.+
T Consensus 122 ~~~~~g~p~iiVvvNK~D~~~---~~~~~~~~~~~i~~~l~~~~~~~-~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 122 LARQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALE 180 (396)
T ss_pred HHHHcCCCEEEEEEeecCCcc---hHHHHHHHHHHHHHHHHhcCCCc-cCCcEEEeecccccC
Confidence 888899995456899999863 23345666777888888888743 368999999999864
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=161.96 Aligned_cols=134 Identities=28% Similarity=0.406 Sum_probs=113.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++..+..+.+++..+.+||||||++|.+.+..++.++|++++|+|++++. .+++.+++..
T Consensus 25 ~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-------~~qT~ehl~i 97 (581)
T TIGR00475 25 ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV-------MTQTGEHLAV 97 (581)
T ss_pred CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999999999999999999886 3778888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++|++++++||+|+.. ...+....+++..+++..++. .+++++++||++|+|++++.
T Consensus 98 l~~lgi~~iIVVlNK~Dlv~----~~~~~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 98 LDLLGIPHTIVVITKADRVN----EEEIKRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred HHHcCCCeEEEEEECCCCCC----HHHHHHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHH
Confidence 88889987899999999863 333455566677777766553 14799999999999998875
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=163.02 Aligned_cols=133 Identities=29% Similarity=0.497 Sum_probs=112.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.|.+++|+++|+|++..+..+.. ++..+.|||||||++|.+.+..++.++|++++|+|+.++. .+++.+++.
T Consensus 25 ~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-------~~qT~ehl~ 97 (614)
T PRK10512 25 ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-------MAQTREHLA 97 (614)
T ss_pred CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-------cHHHHHHHH
Confidence 57789999999999998888766 4677999999999999999999999999999999999887 478899988
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+|+||+|+.. ...+....+++..++...++. ..++|++||++|+|++.|.
T Consensus 98 il~~lgi~~iIVVlNKiDlv~----~~~~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 98 ILQLTGNPMLTVALTKADRVD----EARIAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDALR 158 (614)
T ss_pred HHHHcCCCeEEEEEECCccCC----HHHHHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHHHH
Confidence 888888886789999999862 334556666777777766652 4689999999999998765
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=140.63 Aligned_cols=136 Identities=32% Similarity=0.426 Sum_probs=101.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC--------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccc
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD--------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~ 70 (156)
.|....|+++|+|++.....+.+. ++.+++|||||+..+......+++.+|++++|+|+.++.
T Consensus 29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--- 105 (192)
T cd01889 29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--- 105 (192)
T ss_pred hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc---
Confidence 567788999999999998888776 778999999999988888888888999999999998865
Q ss_pred ccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+..+.+......+.| +++++||+|+..........+++++.+...+...++ .+++++++||++|+|+++|
T Consensus 106 ----~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 106 ----QTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF---KNSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred ----cHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc---CCCCEEEEeccCCCCHHHH
Confidence 23444444445556777 899999999864332222344444444443433333 2579999999999999986
Q ss_pred C
Q psy10355 151 G 151 (156)
Q Consensus 151 ~ 151 (156)
.
T Consensus 178 ~ 178 (192)
T cd01889 178 G 178 (192)
T ss_pred H
Confidence 5
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-23 Score=154.63 Aligned_cols=149 Identities=71% Similarity=1.065 Sum_probs=142.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+..+||++|-|++.....|+...+.|++.|+|||..|...++..+.+||..++|+.+..+.++..|+...|++++..
T Consensus 131 ~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~ 210 (501)
T KOG0459|consen 131 ALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM 210 (501)
T ss_pred EEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++..++.|+|+++||||-+..+|..++++++++++..+++.+|+.+..+..++|+|+.+|.++.+...
T Consensus 211 Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 211 LAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 999999999999999999999999999999999999999999999887788999999999999987764
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=147.26 Aligned_cols=128 Identities=33% Similarity=0.501 Sum_probs=117.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-|..|+|+++|+|++.....|+..++.+..+|+|||.+|.++++....+.|++|+|+.+++|.+ +|+.+++..
T Consensus 50 id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLl 122 (394)
T COG0050 50 IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILL 122 (394)
T ss_pred hccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------Ccchhhhhh
Confidence 4778999999999999999999999999999999999999999999999999999999999994 999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
.+..|+|++++++||+|+.. +.+.++....++.+++.+.+|... +.|++.-||+.
T Consensus 123 arqvGvp~ivvflnK~Dmvd---d~ellelVemEvreLLs~y~f~gd-~~Pii~gSal~ 177 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVD---DEELLELVEMEVRELLSEYGFPGD-DTPIIRGSALK 177 (394)
T ss_pred hhhcCCcEEEEEEecccccC---cHHHHHHHHHHHHHHHHHcCCCCC-Ccceeechhhh
Confidence 99999999999999999874 455677777889999999999765 78999999875
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-22 Score=154.94 Aligned_cols=132 Identities=31% Similarity=0.466 Sum_probs=110.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....|+.++.+++|+|||||++|...+..++..+|++++|+|+.++. ..++.+++.
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~-------~~qt~e~l~ 170 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHIL 170 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHH
Confidence 3788899999999999999999999999999999999999999999999999999999999887 478899999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc---cCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE---LEKN 146 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~---~g~g 146 (156)
.+...++|++|+++||+|+.. .....+.+++++..++...++.. ..+|++++||+ +|.|
T Consensus 171 ~~~~~gip~iIvviNKiDlv~---~~~~~~~i~~~i~~~l~~~~~~~-~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVD---DEELLELVEMELRELLSFYKFPG-DEIPIIRGSALSALQGTN 232 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCC---HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEeccceeecCCC
Confidence 999999996678999999863 22234555566777777766643 25899999887 4554
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=156.07 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=107.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
+|.+..|||||||+..+...+.|.+ +.+++||||||-+|.......+.-||++|+|||+.+|+ +.|+..-
T Consensus 97 LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~an 169 (650)
T KOG0462|consen 97 LDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVAN 169 (650)
T ss_pred hhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHH
Confidence 6889999999999999999999887 99999999999999999999999999999999999998 5888888
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..+.+.|.. +|.|+||+|++.++. ++...++...+. +. ..+++.+||++|.|++++
T Consensus 170 f~lAfe~~L~-iIpVlNKIDlp~adp-----e~V~~q~~~lF~---~~---~~~~i~vSAK~G~~v~~l 226 (650)
T KOG0462|consen 170 FYLAFEAGLA-IIPVLNKIDLPSADP-----ERVENQLFELFD---IP---PAEVIYVSAKTGLNVEEL 226 (650)
T ss_pred HHHHHHcCCe-EEEeeeccCCCCCCH-----HHHHHHHHHHhc---CC---ccceEEEEeccCccHHHH
Confidence 8888888988 899999999986633 333444444332 22 347899999999998864
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=139.92 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=105.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD 73 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~ 73 (156)
.+|..++|++||+|+..+...+.+. ++.+++||||||.+|...+..+++.+|++++|+|+.++.
T Consensus 37 ~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~------ 110 (222)
T cd01885 37 YMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV------ 110 (222)
T ss_pred eccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC------
Confidence 4688999999999999987766665 788999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHcCCCcEEEEEeCCCCC------CcchhHHHHHHHHHHHHHHHHHcCC-------------CCCCCC
Q psy10355 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDP------TVMWSEARYNECKDKILPYLKKLGF-------------NAAKDL 134 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 134 (156)
..++..++..+...++| +++++||+|+. ...+....+.++.+++..++....- +|. .-
T Consensus 111 -~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~-~g 187 (222)
T cd01885 111 -CVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQ-KG 187 (222)
T ss_pred -CHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeC-CC
Confidence 46778888888878888 89999999975 2223344566666677666655521 111 11
Q ss_pred eEEEeecccCCCC
Q psy10355 135 SFMPCSGELEKNP 147 (156)
Q Consensus 135 ~~i~~Sa~~g~gi 147 (156)
.++..||+.|-+.
T Consensus 188 nv~f~S~~~gw~f 200 (222)
T cd01885 188 NVAFGSALHGWGF 200 (222)
T ss_pred cEEEEecccCEEe
Confidence 3788999988665
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=135.78 Aligned_cols=135 Identities=25% Similarity=0.268 Sum_probs=104.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..+.|+++|+|+......+.+++..+.+|||||+.+|...+..+++++|++++|+|++++. ..+....+..
T Consensus 40 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-------~~~~~~~~~~ 112 (194)
T cd01891 40 MDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-------MPQTRFVLKK 112 (194)
T ss_pred cccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-------cHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999998765 2445555565
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++| +++++||+|+.... .....+++..++...+.... .+++++++||++|.|+.+++.
T Consensus 113 ~~~~~~p-~iiv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 113 ALELGLK-PIVVINKIDRPDAR-----PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred HHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 5667888 79999999986321 22333444444444433211 257899999999999988754
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=156.69 Aligned_cols=131 Identities=26% Similarity=0.325 Sum_probs=108.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|+..+...+.|+++++++||||||.+|...+..+++.+|++++|+|+..+. ..++..++.
T Consensus 38 ~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-------~~qT~~~l~ 110 (594)
T TIGR01394 38 VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-------MPQTRFVLK 110 (594)
T ss_pred cccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------cHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 477888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNP 147 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi 147 (156)
.+...++| +|+++||+|+... ...++.+++..++...+.... ..+|++++||++|.+.
T Consensus 111 ~a~~~~ip-~IVviNKiD~~~a-----~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 111 KALELGLK-PIVVINKIDRPSA-----RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred HHHHCCCC-EEEEEECCCCCCc-----CHHHHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 88889999 7999999998643 233344455555554444321 2578999999999753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-22 Score=140.54 Aligned_cols=135 Identities=26% Similarity=0.360 Sum_probs=101.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC---------------------------C------eEEEEEeCCCCcChHHHHHhhh
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD---------------------------R------KHFTILDAPGHKSFVPNMIGGT 51 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~---------------------------~------~~~~iiDtpG~~~~~~~~~~~~ 51 (156)
.|..+.|.++|+|+......+.+. + ..++|||||||++|...+..++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 678899999999999887776653 3 7899999999999999999999
Q ss_pred hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 52 AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
..+|++++|+|++++.. ..+..+.+..+...+.+++++++||+|+... .......+.+...++....
T Consensus 105 ~~~D~~llVvd~~~~~~------~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~----~~~~~~~~~i~~~~~~~~~--- 171 (203)
T cd01888 105 AVMDGALLLIAANEPCP------QPQTSEHLAALEIMGLKHIIIVQNKIDLVKE----EQALENYEQIKKFVKGTIA--- 171 (203)
T ss_pred hcCCEEEEEEECCCCCC------CcchHHHHHHHHHcCCCcEEEEEEchhccCH----HHHHHHHHHHHHHHhcccc---
Confidence 99999999999987421 2456667666666676558999999998632 1223333344444433221
Q ss_pred CCCeEEEeecccCCCCccCCC
Q psy10355 132 KDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++++++||++|+|+++|.+
T Consensus 172 ~~~~i~~vSA~~g~gi~~L~~ 192 (203)
T cd01888 172 ENAPIIPISAQLKYNIDVLLE 192 (203)
T ss_pred CCCcEEEEeCCCCCCHHHHHH
Confidence 246899999999999988753
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=155.01 Aligned_cols=134 Identities=25% Similarity=0.393 Sum_probs=104.7
Q ss_pred ccccHHHhhcCceeeeeeEEEE---------------eC------------------CeEEEEEeCCCCcChHHHHHhhh
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE---------------TD------------------RKHFTILDAPGHKSFVPNMIGGT 51 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~---------------~~------------------~~~~~iiDtpG~~~~~~~~~~~~ 51 (156)
.|.+++|.+||+|++..+..+. .. .+.++|+|||||++|.+.+..++
T Consensus 59 ~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~ 138 (460)
T PTZ00327 59 TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGA 138 (460)
T ss_pred cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHH
Confidence 5678999999999987776441 11 24799999999999999999999
Q ss_pred hcCCEEEEEEeCCCC-ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 52 AQADLAVLVISARKG-EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 52 ~~~d~~ilvvD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..+|++++|+|+.++ . .+++.+++..+...+++++|+++||+|+... ....+..+++..+++....
T Consensus 139 ~~~D~alLVVda~~g~~-------~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~----~~~~~~~~ei~~~l~~~~~-- 205 (460)
T PTZ00327 139 AVMDAALLLIAANESCP-------QPQTSEHLAAVEIMKLKHIIILQNKIDLVKE----AQAQDQYEEIRNFVKGTIA-- 205 (460)
T ss_pred hhCCEEEEEEECCCCcc-------chhhHHHHHHHHHcCCCcEEEEEecccccCH----HHHHHHHHHHHHHHHhhcc--
Confidence 999999999999875 4 4778888888888898878999999998632 2334444455555544322
Q ss_pred CCCCeEEEeecccCCCCccCCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++||+||++|+|++.|.+
T Consensus 206 -~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 206 -DNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred -CCCeEEEeeCCCCCCHHHHHH
Confidence 357999999999999987653
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=129.89 Aligned_cols=132 Identities=28% Similarity=0.424 Sum_probs=97.2
Q ss_pred cccHHHhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 6 LWLRQKREKGKTVEVGRAYFETD-RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+.++.++.+|+|++..+..+.+. +..+.+|||||+++|...+..+++++|++++|+|++++. ..+..+.+..
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-------~~~~~~~~~~ 98 (164)
T cd04171 26 DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-------MPQTREHLEI 98 (164)
T ss_pred ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-------cHhHHHHHHH
Confidence 45667788899999988888876 889999999999999888888999999999999998754 2444454444
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.+++++++||+|+... .......+++...++..+. ...+++++||++|+|++++.
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDE----DWLELVEEEIRELLAGTFL---ADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred HHHhCCCcEEEEEECccccCH----HHHHHHHHHHHHHHHhcCc---CCCcEEEEeCCCCcCHHHHH
Confidence 444566338999999998632 1122233344444443322 24689999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-22 Score=151.66 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=105.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+|.+..|||||+|+..+...+.+. .+.++++|||||-+|.-...+++.-|.++++|||+++|. ..|+.
T Consensus 46 LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTl 118 (603)
T COG0481 46 LDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTL 118 (603)
T ss_pred hhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHH
Confidence 689999999999999998887763 378999999999999989999999999999999999998 57888
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.-...+...+.. +|-|+||+||+.++. +..++++...+ |++. ...+.+||++|.||+++-
T Consensus 119 AN~YlAle~~Le-IiPViNKIDLP~Adp-----ervk~eIe~~i---Gid~---~dav~~SAKtG~gI~~iL 178 (603)
T COG0481 119 ANVYLALENNLE-IIPVLNKIDLPAADP-----ERVKQEIEDII---GIDA---SDAVLVSAKTGIGIEDVL 178 (603)
T ss_pred HHHHHHHHcCcE-EEEeeecccCCCCCH-----HHHHHHHHHHh---CCCc---chheeEecccCCCHHHHH
Confidence 777778888888 899999999986643 34455555443 5433 357999999999998753
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=140.26 Aligned_cols=127 Identities=34% Similarity=0.536 Sum_probs=115.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-|..|+|+.||+|+......|+...+.+.-+|+|||.+|+++++....+.|++|+||.+++|.+ +|+.+++.+
T Consensus 92 ID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLL 164 (449)
T KOG0460|consen 92 IDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLL 164 (449)
T ss_pred hhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHH
Confidence 3778999999999999999999999999999999999999999999999999999999999994 999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
++..|++++++.+||.|+.. +++.++-.+-++++.+.+.||+.. +.|+|.-||+
T Consensus 165 ArQVGV~~ivvfiNKvD~V~---d~e~leLVEmE~RElLse~gf~Gd-~~PvI~GSAL 218 (449)
T KOG0460|consen 165 ARQVGVKHIVVFINKVDLVD---DPEMLELVEMEIRELLSEFGFDGD-NTPVIRGSAL 218 (449)
T ss_pred HHHcCCceEEEEEecccccC---CHHHHHHHHHHHHHHHHHcCCCCC-CCCeeecchh
Confidence 99999999999999999873 344556666678999999999886 7899998876
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=136.32 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=103.0
Q ss_pred ccccHHHhhcCceeeeee------------------------EEEEeCCeEEEEEeCCCCcChHHHHHhhhh--cCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGR------------------------AYFETDRKHFTILDAPGHKSFVPNMIGGTA--QADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~------------------------~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~--~~d~~i 58 (156)
.+..++|.++|.|..... ..++..++.++++|||||++|.+.+..++. .+|+++
T Consensus 35 ~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~l 114 (224)
T cd04165 35 LFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAM 114 (224)
T ss_pred hhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEE
Confidence 455678889999875443 123445788999999999999999888875 789999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC---------
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN--------- 129 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 129 (156)
+|+|+..+. ..++.+++..+...++| +++++||+|+.. ...+....+++...++..++.
T Consensus 115 lVvda~~g~-------~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~----~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~ 182 (224)
T cd04165 115 LVVAANAGI-------IGMTKEHLGLALALNIP-VFVVVTKIDLAP----ANILQETLKDLKRILKVPGVRKLPVPVKSD 182 (224)
T ss_pred EEEECCCCC-------cHHHHHHHHHHHHcCCC-EEEEEECccccC----HHHHHHHHHHHHHHhcCCCccccceeeecc
Confidence 999998876 47788899999999999 899999999753 334555555666665543322
Q ss_pred -----------CCCCCeEEEeecccCCCCccCC
Q psy10355 130 -----------AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 130 -----------~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....|+|++||.+|+|++.|.
T Consensus 183 ~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 183 DDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred cceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 1124599999999999999875
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-21 Score=145.26 Aligned_cols=131 Identities=26% Similarity=0.425 Sum_probs=115.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|++||+|++..++.+..+++.+.|+|.|||+++.+.+..++...|+++||||+++|+ ..++.+++..
T Consensus 25 ~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl-------~~qtgEhL~i 97 (447)
T COG3276 25 TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL-------MAQTGEHLLI 97 (447)
T ss_pred cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc-------chhhHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...|+++.++|+||+|++ ++. ++++.+..++..+.+ .+.++|++|+++|+||++|+.
T Consensus 98 Ldllgi~~giivltk~D~~----d~~---r~e~~i~~Il~~l~l---~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 98 LDLLGIKNGIIVLTKADRV----DEA---RIEQKIKQILADLSL---ANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred HHhcCCCceEEEEeccccc----cHH---HHHHHHHHHHhhccc---ccccccccccccCCCHHHHHH
Confidence 9999999889999999986 233 344445555555553 467899999999999999875
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=128.79 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=94.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEe-----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET-----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.++.+.|+++|+|.......+.+ .+..+++|||||+++|...+..+++.+|++|+|+|++++. ..+..
T Consensus 37 ~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~-------~~~~~ 109 (179)
T cd01890 37 LDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV-------EAQTL 109 (179)
T ss_pred ccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc-------cHhhH
Confidence 46677899999999887766644 4677999999999999999999999999999999998765 23444
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...++| +++++||+|+.... .....+++. +..++. ..+++++||++|+|+++|.
T Consensus 110 ~~~~~~~~~~~~-iiiv~NK~Dl~~~~-----~~~~~~~~~---~~~~~~---~~~~~~~Sa~~g~gi~~l~ 169 (179)
T cd01890 110 ANFYLALENNLE-IIPVINKIDLPSAD-----PERVKQQIE---DVLGLD---PSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred HHHHHHHHcCCC-EEEEEECCCCCcCC-----HHHHHHHHH---HHhCCC---cccEEEeeccCCCCHHHHH
Confidence 555555556788 89999999975321 111122222 223331 2368999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=138.57 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=99.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+++|+|++.....+.+++.++++|||||+.+|...+..+++.+|++++|+|+..+. ..++...+.
T Consensus 38 ~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-------~~~t~~~~~ 110 (270)
T cd01886 38 TMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-------EPQTETVWR 110 (270)
T ss_pred ccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-------CHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999887 467788888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
.+...++| +++++||+|+..++ ...+.+++...+... + ...++|+||..+
T Consensus 111 ~~~~~~~p-~ivviNK~D~~~a~-----~~~~~~~l~~~l~~~---~--~~~~~Pisa~~~ 160 (270)
T cd01886 111 QADRYNVP-RIAFVNKMDRTGAD-----FFRVVEQIREKLGAN---P--VPLQLPIGEEDD 160 (270)
T ss_pred HHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHhCCC---c--eEEEeccccCCC
Confidence 88888999 78999999986432 222333344333221 1 134689998744
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=151.60 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=100.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.+|..++|+++|+|+......+.|. ++.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 43 ~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt 115 (600)
T PRK05433 43 VLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQT 115 (600)
T ss_pred cccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHH
Confidence 3688899999999999988888764 578999999999999999999999999999999999886 3566
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+.... .....+++... .++. ...++++||++|.|+++|.
T Consensus 116 ~~~~~~~~~~~lp-iIvViNKiDl~~a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~Ll 176 (600)
T PRK05433 116 LANVYLALENDLE-IIPVLNKIDLPAAD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEVL 176 (600)
T ss_pred HHHHHHHHHCCCC-EEEEEECCCCCccc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHHH
Confidence 7777777677888 89999999985432 12222233222 3332 2358999999999997653
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=150.20 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=99.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC--C---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD--R---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~--~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
++|..++|+++|+|+..+...+.|. + +.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 39 ~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-------~~qt 111 (595)
T TIGR01393 39 VLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-------EAQT 111 (595)
T ss_pred ccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-------CHhH
Confidence 4688899999999999988877663 2 78999999999999999999999999999999999876 3566
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+.... .....+++.. ..++. ..+++++||++|.|++.|.
T Consensus 112 ~~~~~~~~~~~ip-iIiViNKiDl~~~~-----~~~~~~el~~---~lg~~---~~~vi~vSAktG~GI~~Ll 172 (595)
T TIGR01393 112 LANVYLALENDLE-IIPVINKIDLPSAD-----PERVKKEIEE---VIGLD---ASEAILASAKTGIGIEEIL 172 (595)
T ss_pred HHHHHHHHHcCCC-EEEEEECcCCCccC-----HHHHHHHHHH---HhCCC---cceEEEeeccCCCCHHHHH
Confidence 6666666667888 89999999985322 1222223322 22331 1368999999999998653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=144.38 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=100.3
Q ss_pred ccccHHHhhcCceeeeeeEEEE--------------e------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFE--------------T------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~--------------~------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
.|..++|+++|+|++..+..+. . .+..+++||||||++|.+.+..++..+|+++
T Consensus 29 ~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aI 108 (406)
T TIGR03680 29 TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAL 108 (406)
T ss_pred cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEE
Confidence 5788999999999998755432 1 1467999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+|++++.. ..++.+++..+...+++++++++||+|+..... ..+..+++..+++.... .++++++
T Consensus 109 lVVDa~~g~~------~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~----~~~~~~~i~~~l~~~~~---~~~~ii~ 175 (406)
T TIGR03680 109 LVIAANEPCP------QPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK----ALENYEEIKEFVKGTVA---ENAPIIP 175 (406)
T ss_pred EEEECCCCcc------ccchHHHHHHHHHcCCCeEEEEEEccccCCHHH----HHHHHHHHHhhhhhccc---CCCeEEE
Confidence 9999987641 256778888777778776899999999864221 12222334444333211 2579999
Q ss_pred eecccCCCCccCC
Q psy10355 139 CSGELEKNPLLLG 151 (156)
Q Consensus 139 ~Sa~~g~gi~~l~ 151 (156)
+||++|+|++.|.
T Consensus 176 vSA~~g~gi~~L~ 188 (406)
T TIGR03680 176 VSALHNANIDALL 188 (406)
T ss_pred EECCCCCChHHHH
Confidence 9999999997753
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-20 Score=147.86 Aligned_cols=130 Identities=23% Similarity=0.224 Sum_probs=106.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++|+++|+|+......+.+++.++++||||||.+|...+..+++.+|++++|+|+.++. ..++..++..
T Consensus 43 ~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-------~~qt~~~l~~ 115 (607)
T PRK10218 43 MDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-------MPQTRFVTKK 115 (607)
T ss_pred eccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-------cHHHHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999886 4678888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNP 147 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi 147 (156)
+...++| .++++||+|+..+. ..+..+++...+..++... ...+|++++||++|.|.
T Consensus 116 a~~~gip-~IVviNKiD~~~a~-----~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 116 AFAYGLK-PIVVINKVDRPGAR-----PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred HHHcCCC-EEEEEECcCCCCCc-----hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCccc
Confidence 8888999 68999999986442 2333344444443333321 13589999999999863
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=144.70 Aligned_cols=121 Identities=32% Similarity=0.450 Sum_probs=101.0
Q ss_pred hcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 13 EKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
.-|+|..+--+.+.++ ...++|+|||||+-|..++.+...-+|+++||||+.+|. .+|+.+.+.+++..+
T Consensus 35 aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv-------~pQTiEAI~hak~a~ 107 (509)
T COG0532 35 AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV-------MPQTIEAINHAKAAG 107 (509)
T ss_pred CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc-------chhHHHHHHHHHHCC
Confidence 4589999999999884 478999999999999999999999999999999999999 499999999999999
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l 150 (156)
.| +|+++||+|++..+.... ..++ .+.|+.++ ....++|+||++|+|+++|
T Consensus 108 vP-~iVAiNKiDk~~~np~~v-----~~el----~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 108 VP-IVVAINKIDKPEANPDKV-----KQEL----QEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred CC-EEEEEecccCCCCCHHHH-----HHHH----HHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99 999999999886544332 2222 23344332 3578999999999999876
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=139.61 Aligned_cols=133 Identities=25% Similarity=0.311 Sum_probs=112.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|.-..|+|||+|+-.+-..+.|++..++|+|||||-+|....+..+.-.|+++++||+.+|.+ +|+.-.+.
T Consensus 42 vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlk 114 (603)
T COG1217 42 VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLK 114 (603)
T ss_pred hcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHH
Confidence 36778899999999999999999999999999999999999999999999999999999999994 89998888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~ 149 (156)
-+...|.++ |+|+||+|++.+ +.++..++..+++-.++...+ -++|++..||+.|.--..
T Consensus 115 KAl~~gL~P-IVVvNKiDrp~A-----rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~ 175 (603)
T COG1217 115 KALALGLKP-IVVINKIDRPDA-----RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLD 175 (603)
T ss_pred HHHHcCCCc-EEEEeCCCCCCC-----CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccC
Confidence 888899985 889999998754 334555566666666665432 378999999999875333
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=141.87 Aligned_cols=134 Identities=28% Similarity=0.338 Sum_probs=98.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC--------------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD--------------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~--------------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
.|..++|+++|+|++.....+.+. .+.++|||||||++|...+..++..+|+++
T Consensus 34 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~l 113 (411)
T PRK04000 34 TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAI 113 (411)
T ss_pred cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEE
Confidence 578899999999999876443321 368999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+|++.+.. ..++.+++..+...+++++++++||+|+.... ......+++..+++.... .+.++++
T Consensus 114 lVVDa~~~~~------~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~ii~ 180 (411)
T PRK04000 114 LVIAANEPCP------QPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTVA---ENAPIIP 180 (411)
T ss_pred EEEECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhccccC---CCCeEEE
Confidence 9999987641 25566777777777776589999999986321 122222334444332211 2578999
Q ss_pred eecccCCCCccCC
Q psy10355 139 CSGELEKNPLLLG 151 (156)
Q Consensus 139 ~Sa~~g~gi~~l~ 151 (156)
+||++|+|++.|.
T Consensus 181 vSA~~g~gI~~L~ 193 (411)
T PRK04000 181 VSALHKVNIDALI 193 (411)
T ss_pred EECCCCcCHHHHH
Confidence 9999999997754
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=147.76 Aligned_cols=99 Identities=25% Similarity=0.319 Sum_probs=92.5
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.++||.++|++||+|+......+.|.+ +.+++||||||-+|...+.++++.+|++++|+|+.+|. .+|++..
T Consensus 48 ~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV-------~~QTEtv 120 (697)
T COG0480 48 ATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV-------EPQTETV 120 (697)
T ss_pred ccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCe-------eecHHHH
Confidence 478999999999999999999999996 99999999999999999999999999999999999998 5999999
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
|+++...++| .++++||||+..++...
T Consensus 121 ~rqa~~~~vp-~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 121 WRQADKYGVP-RILFVNKMDRLGADFYL 147 (697)
T ss_pred HHHHhhcCCC-eEEEEECccccccChhh
Confidence 9999999999 59999999998765433
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=125.97 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=102.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.++++....+.++.+...++.++ .++.+|||+|+++|+..+.++|++|+++|+|+|.+. +.+|....+|...+
T Consensus 31 ~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~---~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 31 DDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK---QESFNNVKRWIQEI 107 (205)
T ss_pred cCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc---HHHhhhHHHHHHHh
Confidence 3667788888888888888888766 469999999999999999999999999999999998 67888888898888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCe-EEEeecccCCCCcc
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLS-FMPCSGELEKNPLL 149 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~Sa~~g~gi~~ 149 (156)
......++| .++|+||+|+....... -++...+...+ +++ ++++||+.+.|++.
T Consensus 108 ~~~~~~~v~-~lLVGNK~Dl~~~~~v~------~~~a~~fa~~~------~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 108 DRYASENVP-KLLVGNKCDLTEKRVVS------TEEAQEFADEL------GIPIFLETSAKDSTNVED 162 (205)
T ss_pred hhhccCCCC-eEEEeeccccHhheecC------HHHHHHHHHhc------CCcceeecccCCccCHHH
Confidence 777777888 69999999985321111 11223344444 456 99999999998875
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-19 Score=122.60 Aligned_cols=135 Identities=32% Similarity=0.440 Sum_probs=103.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.++...++++|+|.......+.+.+..+.+|||||+.++...+..+++.+|++++|+|+..+. .....+.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~ 109 (189)
T cd00881 37 LDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-------QPQTREHLRI 109 (189)
T ss_pred ccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999998765 2445555566
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC--------CCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN--------AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++++||+|+.. ........+.+...++..+.. .....+++++||++|.|++++.
T Consensus 110 ~~~~~~~-i~iv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~ 179 (189)
T cd00881 110 AREGGLP-IIVAINKIDRVG----EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELL 179 (189)
T ss_pred HHHCCCC-eEEEEECCCCcc----hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHH
Confidence 6666778 899999999863 122333344454444443320 0135789999999999998764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=125.72 Aligned_cols=104 Identities=28% Similarity=0.397 Sum_probs=88.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.++|+++|+|+......+.+++.++++|||||+.+|...+..+++.+|++++|+|+.++. ..+....+..
T Consensus 39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-------~~~~~~~~~~ 111 (237)
T cd04168 39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV-------QAQTRILWRL 111 (237)
T ss_pred CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999876 3567777788
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKD 117 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 117 (156)
+...++| +++++||+|+..++. ...++++++
T Consensus 112 ~~~~~~P-~iivvNK~D~~~a~~-~~~~~~i~~ 142 (237)
T cd04168 112 LRKLNIP-TIIFVNKIDRAGADL-EKVYQEIKE 142 (237)
T ss_pred HHHcCCC-EEEEEECccccCCCH-HHHHHHHHH
Confidence 8788999 799999999875543 223444443
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=143.93 Aligned_cols=123 Identities=33% Similarity=0.419 Sum_probs=98.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
..+|+|.......+.+++..++|||||||.+|..++..+++.+|++|+|+|++++. .+++.+++.++...++|
T Consensus 319 e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv-------~~qT~e~i~~a~~~~vP 391 (787)
T PRK05306 319 EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV-------MPQTIEAINHAKAAGVP 391 (787)
T ss_pred ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC-------CHhHHHHHHHHHhcCCc
Confidence 35789999988899999999999999999999999999999999999999999887 47888899988888999
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHH---HHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILP---YLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+++||+|+...+. ..+..++.. +.+.++ ..++++++||++|+|++.|.
T Consensus 392 -iIVviNKiDl~~a~~-----e~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 392 -IIVAINKIDKPGANP-----DRVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred -EEEEEECccccccCH-----HHHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHH
Confidence 899999999864321 222222221 111111 24789999999999998864
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=139.46 Aligned_cols=124 Identities=31% Similarity=0.389 Sum_probs=96.0
Q ss_pred HhhcCceeeeeeEEEEeCCe-EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 11 KREKGKTVEVGRAYFETDRK-HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
...+|+|.+.....+.+++. .++|||||||++|...+..++..+|++++|+|++++. .+++.+.+..+...+
T Consensus 115 ~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv-------~~qT~e~i~~~~~~~ 187 (587)
T TIGR00487 115 GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-------MPQTIEAISHAKAAN 187 (587)
T ss_pred ccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC-------CHhHHHHHHHHHHcC
Confidence 34568999988888888655 8999999999999999999999999999999999887 478888888888889
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+...+. +++.+.+. ..++.+. ...+++++||++|+|+++|.
T Consensus 188 vP-iIVviNKiDl~~~~~-----e~v~~~L~----~~g~~~~~~~~~~~~v~iSAktGeGI~eLl 242 (587)
T TIGR00487 188 VP-IIVAINKIDKPEANP-----DRVKQELS----EYGLVPEDWGGDTIFVPVSALTGDGIDELL 242 (587)
T ss_pred CC-EEEEEECcccccCCH-----HHHHHHHH----HhhhhHHhcCCCceEEEEECCCCCChHHHH
Confidence 99 899999999864322 22222222 1221110 13689999999999998764
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=142.99 Aligned_cols=124 Identities=24% Similarity=0.279 Sum_probs=101.8
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..+|+.++|+++|+|++.....+.+.+++++++|||||.+|...+..+++.+|++++|+|+..|. ..++..++
T Consensus 48 ~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-------~~qt~~~~ 120 (693)
T PRK00007 48 ATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-------EPQSETVW 120 (693)
T ss_pred ccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-------chhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999987 57889999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
..+...++| .|+++||+|+...+ +....+++...+ ++.. -...+|+||..+
T Consensus 121 ~~~~~~~~p-~iv~vNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~ipisa~~~ 171 (693)
T PRK00007 121 RQADKYKVP-RIAFVNKMDRTGAD-----FYRVVEQIKDRL---GANP--VPIQLPIGAEDD 171 (693)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCe--eeEEecCccCCc
Confidence 999999999 68999999987543 222333333322 3211 235789998877
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=124.28 Aligned_cols=94 Identities=29% Similarity=0.472 Sum_probs=83.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.++|+++|+|+......+++.+.++++|||||+.+|...+..+++.+|++|+|+|++.+. ..+....+.
T Consensus 45 ~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-------~~~~~~i~~ 117 (267)
T cd04169 45 TSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-------EPQTRKLFE 117 (267)
T ss_pred cCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-------cHHHHHHHH
Confidence 3688999999999999999999999999999999999999998999999999999999998875 345566677
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+..+
T Consensus 118 ~~~~~~~P-~iivvNK~D~~~a 138 (267)
T cd04169 118 VCRLRGIP-IITFINKLDREGR 138 (267)
T ss_pred HHHhcCCC-EEEEEECCccCCC
Confidence 77777899 7999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=119.74 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=102.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.|..++|+++|+|+......+.+. ...+++|||||+.+|...+..+++.+|++++|+|+..+. .....
T Consensus 41 ~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~-------~~~~~ 113 (213)
T cd04167 41 TDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV-------TSNTE 113 (213)
T ss_pred CCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC-------CHHHH
Confidence 577789999999999888887654 378999999999999999999999999999999998765 23444
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCc------chhHHHHHHHHHHHHHHHHHcCCCCC-----CCCeEEEeecccCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTV------MWSEARYNECKDKILPYLKKLGFNAA-----KDLSFMPCSGELEKNPL 148 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~Sa~~g~gi~ 148 (156)
..+..+...+.| +++++||+|+... ......+.++.+++..+++..++.+. .+.+++..||+.|-+..
T Consensus 114 ~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 114 RLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 555555566778 8999999997521 12224566666777777777765321 13457788999887653
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=141.76 Aligned_cols=125 Identities=26% Similarity=0.293 Sum_probs=101.3
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..+|+.++|+++|+|++.....+.+++++++++|||||.+|...+..+++.+|++++|+|+.++. ..++..++
T Consensus 46 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-------~~qt~~i~ 118 (691)
T PRK12739 46 ATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-------EPQSETVW 118 (691)
T ss_pred cccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999887 47788888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
..+...++| +|+++||+|+.... +..+.+++...+ ++.. ....+|+|+..+.
T Consensus 119 ~~~~~~~~p-~iv~iNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~iPis~~~~f 170 (691)
T PRK12739 119 RQADKYGVP-RIVFVNKMDRIGAD-----FFRSVEQIKDRL---GANA--VPIQLPIGAEDDF 170 (691)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCc--eeEEecccccccc
Confidence 988888999 68999999987532 233334444333 2211 1245788887654
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-19 Score=124.86 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=89.3
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
|...|..+-.+...+.....+|.||||+|+++|......|||+|+++|+|+|.++ ..+|.....|...+......++
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~---~~SF~~aK~WvkeL~~~~~~~~ 111 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD---EESFEKAKNWVKELQRQASPNI 111 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc---HHHHHHHHHHHHHHHhhCCCCe
Confidence 4445555555555555555889999999999999999999999999999999988 5566666666666654444444
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. +-+|+||+||... ....+ ++...+.+.. +..++++||++|.|++++
T Consensus 112 v-ialvGNK~DL~~~--R~V~~----~ea~~yAe~~------gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 112 V-IALVGNKADLLER--REVEF----EEAQAYAESQ------GLLFFETSAKTGENVNEI 158 (200)
T ss_pred E-EEEecchhhhhhc--ccccH----HHHHHHHHhc------CCEEEEEecccccCHHHH
Confidence 4 5669999998641 11122 2344445544 468999999999999874
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=124.46 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+....++.+.....+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++. .+|+....|...+....
T Consensus 26 ~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~---~Sf~~l~~w~~~i~~~~ 102 (202)
T cd04120 26 CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK---ETFDDLPKWMKMIDKYA 102 (202)
T ss_pred CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhC
Confidence 344445555555555566665 6789999999999999999999999999999999884 33433334444333322
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.| +++|+||+|+..... +. .++...+.+.. .+++++++||++|+||+++-
T Consensus 103 ~~~~p-iilVgNK~DL~~~~~----v~--~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 103 SEDAE-LLLVGNKLDCETDRE----IS--RQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred CCCCc-EEEEEECcccccccc----cC--HHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHH
Confidence 34577 899999999853111 00 11122223322 14689999999999998753
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-18 Score=139.88 Aligned_cols=125 Identities=25% Similarity=0.280 Sum_probs=100.4
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.++|+.+.|+++|+|++.....+.+++.++++|||||+.+|...+..+++.+|++++|+|+.++. ..++..++
T Consensus 48 ~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~ 120 (689)
T TIGR00484 48 ATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-------QPQSETVW 120 (689)
T ss_pred cccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-------ChhHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999886 46677888
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
..+...++| +++++||+|+..+. +....+++...+ ++.. ...++|+||..+.
T Consensus 121 ~~~~~~~~p-~ivviNK~D~~~~~-----~~~~~~~i~~~l---~~~~--~~~~ipis~~~~~ 172 (689)
T TIGR00484 121 RQANRYEVP-RIAFVNKMDKTGAN-----FLRVVNQIKQRL---GANA--VPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHcCCC-EEEEEECCCCCCCC-----HHHHHHHHHHHh---CCCc--eeEEeccccCCCc
Confidence 888888999 78999999987542 223333343332 3321 1247899998774
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=134.46 Aligned_cols=121 Identities=35% Similarity=0.450 Sum_probs=100.0
Q ss_pred hcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 13 EKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
--|+|..+.-+.+.. ++..++|+|||||.-|..++.++...+|++++||.+.+|. .+|+.+.+.+++..++|
T Consensus 183 ~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV-------mpQT~EaIkhAk~A~Vp 255 (683)
T KOG1145|consen 183 AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV-------MPQTLEAIKHAKSANVP 255 (683)
T ss_pred cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc-------cHhHHHHHHHHHhcCCC
Confidence 358888887777765 6688999999999999999999999999999999999999 49999999999999999
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHH---HHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILP---YLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|+++||+|.++++... .++++.. .++.+| .+++++|+||++|+|++.|
T Consensus 256 -iVvAinKiDkp~a~pek-----v~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 256 -IVVAINKIDKPGANPEK-----VKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLL 307 (683)
T ss_pred -EEEEEeccCCCCCCHHH-----HHHHHHHcCccHHHcC----CceeEEEeecccCCChHHH
Confidence 99999999988664433 3333322 133443 3689999999999999876
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-19 Score=121.18 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+........+.....++++|||+|++.|.+.+.++|+.+.++|||+|.+. ..+|.-...|.+-+++....+.. ++
T Consensus 40 Gvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~---r~sF~hL~~wL~D~rq~~~~Nmv-Im 115 (216)
T KOG0098|consen 40 GVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR---RESFNHLTSWLEDARQHSNENMV-IM 115 (216)
T ss_pred eeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc---hhhHHHHHHHHHHHHHhcCCCcE-EE
Confidence 444444444445455679999999999999999999999999999999987 44555556666666655556777 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++.||+||... .+--+++...+.+++|+ .+.++||++++|+++.
T Consensus 116 LiGNKsDL~~r------R~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 116 LIGNKSDLEAR------REVSKEEGEAFAREHGL------IFMETSAKTAENVEEA 159 (216)
T ss_pred EEcchhhhhcc------ccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHH
Confidence 99999998632 13335667788888764 7889999999999874
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=126.69 Aligned_cols=133 Identities=28% Similarity=0.376 Sum_probs=107.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEe------C--------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET------D--------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAV 58 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~------~--------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~i 58 (156)
+|..++|-+||+|+...+..... . -+.+.|+|+|||+-+...+.+...-.|+++
T Consensus 35 T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAl 114 (415)
T COG5257 35 TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGAL 114 (415)
T ss_pred eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceE
Confidence 46678999999999876654321 0 067999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP 138 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (156)
+|+++++..- ++|+.+++..+.-.|+.++|++.||+|+.. .++..+--++++.|++..-. ++.|+||
T Consensus 115 LvIaANEpcP------QPQT~EHl~AleIigik~iiIvQNKIDlV~----~E~AlE~y~qIk~FvkGt~A---e~aPIIP 181 (415)
T COG5257 115 LVIAANEPCP------QPQTREHLMALEIIGIKNIIIVQNKIDLVS----RERALENYEQIKEFVKGTVA---ENAPIIP 181 (415)
T ss_pred EEEecCCCCC------CCchHHHHHHHhhhccceEEEEecccceec----HHHHHHHHHHHHHHhccccc---CCCceee
Confidence 9999987652 799999999999999998999999999984 33344444556666665532 5789999
Q ss_pred eecccCCCCccC
Q psy10355 139 CSGELEKNPLLL 150 (156)
Q Consensus 139 ~Sa~~g~gi~~l 150 (156)
+||.++.||+.|
T Consensus 182 iSA~~~~NIDal 193 (415)
T COG5257 182 ISAQHKANIDAL 193 (415)
T ss_pred ehhhhccCHHHH
Confidence 999999999876
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=118.91 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=82.3
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-+|+|++...+.+.+.+..+.++|+||..++. +.+..++ ...|++++|+|++.. .+......+
T Consensus 30 ~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~q 100 (156)
T PF02421_consen 30 WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQ 100 (156)
T ss_dssp STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHH
T ss_pred CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHH
Confidence 47999999999999999999999999975542 1233333 578999999999762 455667777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|++.......+.+.+.+.+ ++|++++||++|+|+++|+
T Consensus 101 l~e~g~P-~vvvlN~~D~a~~~g~~id~~~Ls~~L-------------g~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 101 LLELGIP-VVVVLNKMDEAERKGIEIDAEKLSERL-------------GVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHHTTSS-EEEEEETHHHHHHTTEEE-HHHHHHHH-------------TS-EEEEBTTTTBTHHHHH
T ss_pred HHHcCCC-EEEEEeCHHHHHHcCCEECHHHHHHHh-------------CCCEEEEEeCCCcCHHHHH
Confidence 8889999 899999999753322222233333222 4799999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=138.78 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=94.7
Q ss_pred HhhcCceeeeeeEEEEe----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 11 KREKGKTVEVGRAYFET----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+..+|+|.+...+.+.+ .+..++|||||||+.|...+..+++.+|++|+|+|+.++. ..++.+.+..+.
T Consensus 272 ~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv-------~~QT~E~I~~~k 344 (742)
T CHL00189 272 KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV-------KPQTIEAINYIQ 344 (742)
T ss_pred ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC-------ChhhHHHHHHHH
Confidence 34568888776666554 3588999999999999999999999999999999999887 477888888888
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH---HHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY---LKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++| +|+++||+|+.... ...+.+++... ....+ ..++++++||++|+|++.|.+
T Consensus 345 ~~~iP-iIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle 403 (742)
T CHL00189 345 AANVP-IIVAINKIDKANAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLE 403 (742)
T ss_pred hcCce-EEEEEECCCccccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHH
Confidence 88999 89999999986432 22223333221 11111 247899999999999987643
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-18 Score=128.60 Aligned_cols=106 Identities=24% Similarity=0.360 Sum_probs=93.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-||+..|++|||++-.+..+|.+.+..++++|||||++|...+.+.+.-+|.++.|+|+..|+ .+++...+..
T Consensus 56 SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeV 128 (528)
T COG4108 56 SDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEV 128 (528)
T ss_pred cHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
++..++| ++-++||+|+...+.- +.++++.+++
T Consensus 129 crlR~iP-I~TFiNKlDR~~rdP~-ELLdEiE~~L 161 (528)
T COG4108 129 CRLRDIP-IFTFINKLDREGRDPL-ELLDEIEEEL 161 (528)
T ss_pred HhhcCCc-eEEEeeccccccCChH-HHHHHHHHHh
Confidence 9999999 9999999998654332 2344544444
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=118.87 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=88.7
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
+.++.+...++.++ ..+.+|||+|+++|...+.+|+++|+++++|+|.+. +.+|+....|...+......+++ +
T Consensus 45 iGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn---e~Sfeni~~W~~~I~e~a~~~v~-~ 120 (207)
T KOG0078|consen 45 IGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN---EKSFENIRNWIKNIDEHASDDVV-K 120 (207)
T ss_pred EEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc---hHHHHHHHHHHHHHHhhCCCCCc-E
Confidence 34444444555544 569999999999999999999999999999999988 55666666677777666666888 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++|+||+|+...- .--.+.-..+..++ +++|+++||++|.||++.
T Consensus 121 ~LvGNK~D~~~~R------~V~~e~ge~lA~e~------G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 121 ILVGNKCDLEEKR------QVSKERGEALAREY------GIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEeeccccccccc------cccHHHHHHHHHHh------CCeEEEccccCCCCHHHH
Confidence 9999999985311 11122233444444 579999999999999763
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-18 Score=117.51 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=82.4
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+.++..+.+..+.....+..++ .++.||||||++++...+..+++++|++|+|+|.++.. +|.....+...+...
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---SFENTTKWIQDILNE 81 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHh
Confidence 4455555665555544555444 67999999999999999999999999999999998742 222222233222222
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+.| +++|+||+|+...... ...+ .....+.. ++.++++||++|+|++++.
T Consensus 82 ~~~~~p-iilVgNK~DL~~~~~v--~~~e----~~~~~~~~------~~~~~e~SAk~g~nV~~lf 134 (176)
T PTZ00099 82 RGKDVI-IALVGNKTDLGDLRKV--TYEE----GMQKAQEY------NTMFHETSAKAGHNIKVLF 134 (176)
T ss_pred cCCCCe-EEEEEECcccccccCC--CHHH----HHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 223466 8999999998531110 1111 22222322 3578999999999998753
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=129.88 Aligned_cols=94 Identities=26% Similarity=0.409 Sum_probs=85.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+++..+++||||||.+|...+..+++.+|++|+|+|++.+. ..++...+..
T Consensus 54 ~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~ 126 (526)
T PRK00741 54 SDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-------EPQTRKLMEV 126 (526)
T ss_pred CCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-------CHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999886 3667777888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...++| +++++||+|+..++
T Consensus 127 ~~~~~iP-iiv~iNK~D~~~a~ 147 (526)
T PRK00741 127 CRLRDTP-IFTFINKLDRDGRE 147 (526)
T ss_pred HHhcCCC-EEEEEECCcccccC
Confidence 8788999 89999999986543
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-17 Score=135.64 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=102.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEe----CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFET----DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+|+.++|++||+|+......+.| ++..++|+|||||.+|...+..+++.+|++|+|+|+..|. ..++.
T Consensus 57 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-------~~~t~ 129 (731)
T PRK07560 57 ALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-------MPQTE 129 (731)
T ss_pred ecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-------CccHH
Confidence 479999999999999998877665 4788999999999999999999999999999999999887 47888
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcch------hHHHHHHHHHHHHHHHHHcC---------CCCCCCCeEEEeecccC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMW------SEARYNECKDKILPYLKKLG---------FNAAKDLSFMPCSGELE 144 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~Sa~~g 144 (156)
.++..+...+.| .|+++||+|+...+. ....+....+++..++.... +.+. +-.++..||+.+
T Consensus 130 ~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~ 207 (731)
T PRK07560 130 TVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYN 207 (731)
T ss_pred HHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccc
Confidence 888887778888 699999999764321 12223333334444443221 1111 234667899887
Q ss_pred CCCc
Q psy10355 145 KNPL 148 (156)
Q Consensus 145 ~gi~ 148 (156)
.+..
T Consensus 208 ~~~~ 211 (731)
T PRK07560 208 WAIS 211 (731)
T ss_pred ccee
Confidence 7654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-17 Score=112.00 Aligned_cols=126 Identities=28% Similarity=0.367 Sum_probs=89.1
Q ss_pred hhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 12 REKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
..+++|.+.....+... +..+.+|||||+..+...+..+++.+|++++|+|++++. ..+..+.+..+...
T Consensus 29 ~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~~~~~~~~ 101 (168)
T cd01887 29 EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-------MPQTIEAIKLAKAA 101 (168)
T ss_pred cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-------cHHHHHHHHHHHHc
Confidence 44577777777777764 788999999999999888888999999999999998764 24555566666677
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+.... . ..+.+.+...... .. .....++++++||++|+|+++|.
T Consensus 102 ~~p-~ivv~NK~Dl~~~~--~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 102 NVP-FIVALNKIDKPNAN--P---ERVKNELSELGLQ-GEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred CCC-EEEEEEceeccccc--H---HHHHHHHHHhhcc-ccccccCcCcEEEeecccCCCHHHHH
Confidence 888 89999999976321 1 1112222221111 00 00124689999999999998764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=137.37 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=84.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
++|..++|+++|+|+......+.+. ++.++++|||||.+|...+..+++.+|++|+|+|+..|.
T Consensus 56 ~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv 135 (843)
T PLN00116 56 MTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (843)
T ss_pred eccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC
Confidence 4799999999999999888777773 678999999999999999999999999999999999998
Q ss_pred cccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..+++.+++++...++| +|+++||+|+.
T Consensus 136 -------~~~t~~~~~~~~~~~~p-~i~~iNK~D~~ 163 (843)
T PLN00116 136 -------CVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
T ss_pred -------cccHHHHHHHHHHCCCC-EEEEEECCccc
Confidence 57899999999999999 79999999986
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=113.83 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=81.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 90 (156)
..|+......+.+++..+.+|||||++.+...+..+++.+|++++|+|+++.. .+ ......+..+ ...+.
T Consensus 35 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~---~~~~~~~~~~~~~~~~~~~ 108 (167)
T cd04160 35 TPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RF---EESKSALEKVLRNEALEGV 108 (167)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HH---HHHHHHHHHHHhChhhcCC
Confidence 44555556677778999999999999999999999999999999999997642 00 1111222211 12467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++++||+|+..... ..++.+.+....+..+. ..++++++||++|+|++++
T Consensus 109 p-~ilv~NK~D~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 109 P-LLILANKQDLPDALS----VEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred C-EEEEEEccccccCCC----HHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 8 899999999754211 22222223222222221 2468999999999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=127.74 Aligned_cols=125 Identities=24% Similarity=0.208 Sum_probs=93.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+|+|.+.....+..++..+.+|||||+.++. ..+..+++.+|++++|+|++++. ..++.
T Consensus 201 ~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~-------~~~~~ 273 (429)
T TIGR03594 201 SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI-------TEQDL 273 (429)
T ss_pred CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc-------cHHHH
Confidence 3467999999888998899999999999986542 22456789999999999999876 35566
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+.. ......++.+.+...+... ...+++++||++|.|++++.
T Consensus 274 ~~~~~~~~~~~~-iiiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~-----~~~~vi~~SA~~g~~v~~l~ 336 (429)
T TIGR03594 274 RIAGLILEAGKA-LVIVVNKWDLVK---DEKTREEFKKELRRKLPFL-----DFAPIVFISALTGQGVDKLL 336 (429)
T ss_pred HHHHHHHHcCCc-EEEEEECcccCC---CHHHHHHHHHHHHHhcccC-----CCCceEEEeCCCCCCHHHHH
Confidence 667777777888 899999999862 2233444455554433322 24689999999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=128.30 Aligned_cols=94 Identities=21% Similarity=0.405 Sum_probs=84.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++.++++||||||.+|...+..+++.+|++|+|+|+..+. ..+....+.
T Consensus 54 ~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~ 126 (527)
T TIGR00503 54 KSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-------ETRTRKLME 126 (527)
T ss_pred cCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999998876 356677777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 127 ~~~~~~~P-iivviNKiD~~~~ 147 (527)
T TIGR00503 127 VTRLRDTP-IFTFMNKLDRDIR 147 (527)
T ss_pred HHHhcCCC-EEEEEECccccCC
Confidence 77777888 8999999998644
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=134.56 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=83.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC----------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD----------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD 73 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~ 73 (156)
.+|..++|+++|+|+......+.+. ++.++|+|||||.+|...+..+++.+|++|+|+|+..|.
T Consensus 56 ~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~------ 129 (836)
T PTZ00416 56 FTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV------ 129 (836)
T ss_pred ecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc------
Confidence 4789999999999999887777775 678999999999999999999999999999999999988
Q ss_pred CCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..++..++..+...++| +|+++||+|+.
T Consensus 130 -~~~t~~~~~~~~~~~~p-~iv~iNK~D~~ 157 (836)
T PTZ00416 130 -CVQTETVLRQALQERIR-PVLFINKVDRA 157 (836)
T ss_pred -CccHHHHHHHHHHcCCC-EEEEEEChhhh
Confidence 57888999999888988 79999999986
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=135.13 Aligned_cols=134 Identities=28% Similarity=0.380 Sum_probs=98.3
Q ss_pred HHHhhcCceeeeeeEEEEeCC------------------eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccc
Q psy10355 9 RQKREKGKTVEVGRAYFETDR------------------KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~------------------~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~ 70 (156)
.++-..|+|..+....+.++. ..++|||||||+.|......++..+|++++|+|++++.
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--- 563 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--- 563 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC---
Confidence 445577999998887776542 12899999999999988888889999999999999876
Q ss_pred ccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh---------------HHHHHHHHHHHHH---HHHHcCCCC--
Q psy10355 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS---------------EARYNECKDKILP---YLKKLGFNA-- 130 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~-- 130 (156)
.+++.+.+..+...++| +++++||+|+... |. +....++...+.. .+.+.|+..
T Consensus 564 ----~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~-~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~ 637 (1049)
T PRK14845 564 ----KPQTIEAINILRQYKTP-FVVAANKIDLIPG-WNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADR 637 (1049)
T ss_pred ----CHhHHHHHHHHHHcCCC-EEEEEECCCCccc-cccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhh
Confidence 47788888888888888 8999999998521 11 1112232222222 244555532
Q ss_pred -------CCCCeEEEeecccCCCCccCC
Q psy10355 131 -------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 -------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++++|+||++|+||+.|.
T Consensus 638 ~~~~~d~~~~v~iVpVSA~tGeGId~Ll 665 (1049)
T PRK14845 638 FDRVQDFTRTVAIVPVSAKTGEGIPELL 665 (1049)
T ss_pred hhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence 135799999999999999875
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=129.47 Aligned_cols=112 Identities=27% Similarity=0.377 Sum_probs=81.3
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH-
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE- 109 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~- 109 (156)
.+.|||||||+.|...+..+++.+|++++|+|++++. ..++.+.+..+...++| +++++||+|+.. .+..
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~-~~~~~ 140 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYKTP-FVVAANKIDRIP-GWRSH 140 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHHHHHcCCC-EEEEEECCCccc-hhhhc
Confidence 4899999999999999999999999999999999876 46777777777778899 899999999853 1110
Q ss_pred ----------HHHHHHHH-------HHHHHHHHcCCCCC---------CCCeEEEeecccCCCCccCC
Q psy10355 110 ----------ARYNECKD-------KILPYLKKLGFNAA---------KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ----------~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..-..++. .+...+...|+..+ .+.+++|+||++|+|+++|.
T Consensus 141 ~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl 208 (590)
T TIGR00491 141 EGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELL 208 (590)
T ss_pred cCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHH
Confidence 00001111 11122344444321 25799999999999999874
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=122.75 Aligned_cols=124 Identities=27% Similarity=0.293 Sum_probs=105.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..|+|++.....+++++.++.++||+|.++- ...+..++..+|++++|+|++++. ..++..+
T Consensus 209 ~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~-------~~qD~~i 281 (444)
T COG1160 209 IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI-------SEQDLRI 281 (444)
T ss_pred CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc-------hHHHHHH
Confidence 7899999999999999999999999998653 345778889999999999999998 4788999
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++...|.+ +|+++||+|+... +....+..++++...+..+++ .|++++||++|.|++.|.
T Consensus 282 a~~i~~~g~~-~vIvvNKWDl~~~--~~~~~~~~k~~i~~~l~~l~~-----a~i~~iSA~~~~~i~~l~ 343 (444)
T COG1160 282 AGLIEEAGRG-IVIVVNKWDLVEE--DEATMEEFKKKLRRKLPFLDF-----APIVFISALTGQGLDKLF 343 (444)
T ss_pred HHHHHHcCCC-eEEEEEccccCCc--hhhHHHHHHHHHHHHhccccC-----CeEEEEEecCCCChHHHH
Confidence 9999999999 7999999997643 334567777778777776654 588999999999998763
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-17 Score=113.10 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=80.9
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
+......++...+.+.+|||+|+++|.....+|++++.++|+|+|.++. .+|.....|.+-+...+...-.-+++|+
T Consensus 59 Flskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~---~Sfe~t~kWi~dv~~e~gs~~viI~LVG 135 (221)
T KOG0094|consen 59 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR---NSFENTSKWIEDVRRERGSDDVIIFLVG 135 (221)
T ss_pred EEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc---chHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 3333333333446799999999999999999999999999999999873 3454445555554443333223378899
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
||.||... ..+. .++-....+++ +..|+++||+.|+|+.+|
T Consensus 136 nKtDL~dk----rqvs--~eEg~~kAkel------~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 136 NKTDLSDK----RQVS--IEEGERKAKEL------NAEFIETSAKAGENVKQL 176 (221)
T ss_pred ccccccch----hhhh--HHHHHHHHHHh------CcEEEEecccCCCCHHHH
Confidence 99998742 2221 22223334444 468999999999999765
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=109.06 Aligned_cols=117 Identities=23% Similarity=0.211 Sum_probs=81.9
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+++..+.+|||||+.++.. .+..++ ..+|++++|+|+.+.. .....+.
T Consensus 25 ~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~ 95 (158)
T cd01879 25 NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTL 95 (158)
T ss_pred CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHH
Confidence 3578899988888999889999999999987653 234444 4899999999997632 2233344
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++++||+|+....... .....+.+.. +.+++++||++|.|+..+.
T Consensus 96 ~~~~~~~~-~iiv~NK~Dl~~~~~~~-------~~~~~~~~~~------~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 96 QLLELGLP-VVVALNMIDEAEKRGIK-------IDLDKLSELL------GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred HHHHcCCC-EEEEEehhhhcccccch-------hhHHHHHHhh------CCCeEEEEccCCCCHHHHH
Confidence 45556788 89999999986432111 1111222222 3589999999999988754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-17 Score=112.18 Aligned_cols=125 Identities=16% Similarity=0.087 Sum_probs=82.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+.+++ ..+.+|||||++++...+...++.+|++++|+|+++.. +|.....+...+......+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~~~~~~~~~i~~~~~~~ 108 (165)
T cd01864 32 QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SFESVPHWIEEVEKYGASN 108 (165)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCC
Confidence 333444445555566666 57899999999999998999999999999999998743 2222233333333332346
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++|+||+|+...... ..+....+.+..+ ...++++||++|.|++++.
T Consensus 109 ~p-~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 109 VV-LLLIGNKCDLEEQREV------LFEEACTLAEKNG-----MLAVLETSAKESQNVEEAF 158 (165)
T ss_pred Cc-EEEEEECccccccccc------CHHHHHHHHHHcC-----CcEEEEEECCCCCCHHHHH
Confidence 77 8999999998532110 1112233333332 2478999999999998764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=116.05 Aligned_cols=93 Identities=25% Similarity=0.342 Sum_probs=82.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.++|+++|+|+......+.++++.+++|||||+.+|...+..+++.+|++++|+|++.+. ..+....+..
T Consensus 39 ~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-------~~~~~~~~~~ 111 (268)
T cd04170 39 SDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGV-------EVGTEKLWEF 111 (268)
T ss_pred CCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-------CHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999998876 3556677777
Q ss_pred HHHcCCCcEEEEEeCCCCCCc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
+...++| .++++||+|+...
T Consensus 112 ~~~~~~p-~iivvNK~D~~~~ 131 (268)
T cd04170 112 ADEAGIP-RIIFINKMDRERA 131 (268)
T ss_pred HHHcCCC-EEEEEECCccCCC
Confidence 7788899 7889999998654
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-17 Score=114.38 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
...++.+.....+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++. .+|+....|.+.+... ..+.
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~---~Sf~~~~~w~~~i~~~-~~~~ 111 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDEH-APGV 111 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHh-CCCC
Confidence 34445554444455555 6789999999999999999999999999999999874 3444334444444322 2467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +|+++||+|+..... ...++...+.+.. +++++++||++|.|++++-
T Consensus 112 p-iilVGNK~DL~~~~~------v~~~~~~~~a~~~------~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 112 P-KILVGNRLHLAFKRQ------VATEQAQAYAERN------GMTFFEVSPLCNFNITESF 159 (189)
T ss_pred C-EEEEEECccchhccC------CCHHHHHHHHHHc------CCEEEEecCCCCCCHHHHH
Confidence 7 899999999852110 0122233444443 4689999999999998753
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=116.33 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..+.+.+|.....+-+..++.++.|+||||.++ +.+....++..+|+++||+|+.++. ...+..+
T Consensus 34 vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~-------~~~d~~i 106 (298)
T COG1159 34 VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW-------GPGDEFI 106 (298)
T ss_pred ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC-------CccHHHH
Confidence 345778999999999999999999999999754 3566888889999999999998876 4566667
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..++..+.| +++++||+|..... ..+.. +...+ .... ...++|+||++|.|++.|.
T Consensus 107 l~~lk~~~~p-vil~iNKID~~~~~---~~l~~----~~~~~~~~~~-----f~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 107 LEQLKKTKTP-VILVVNKIDKVKPK---TVLLK----LIAFLKKLLP-----FKEIVPISALKGDNVDTLL 164 (298)
T ss_pred HHHHhhcCCC-eEEEEEccccCCcH---HHHHH----HHHHHHhhCC-----cceEEEeeccccCCHHHHH
Confidence 7777776678 79999999976321 11112 22222 2222 3489999999999998764
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=112.34 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=71.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++++|++|+|+|+++.. +|.....+...+......+.| +++++||+|+......
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV 125 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc
Confidence 357899999999999999999999999999999998743 222222222222222223566 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. .++...+++.. +++++++||++|+|++++
T Consensus 126 --~----~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 126 --T----YEEAKQFADEN------GLLFLECSAKTGENVEDA 155 (166)
T ss_pred --C----HHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 1 11223333333 468999999999999875
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=122.10 Aligned_cols=124 Identities=27% Similarity=0.244 Sum_probs=93.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+|+|.+.....+.+++..+.+|||||+.+.. ..+..+++.+|++|+|+|++.+. ..+..
T Consensus 202 ~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~-------~~~~~ 274 (435)
T PRK00093 202 SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI-------TEQDL 274 (435)
T ss_pred cCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC-------CHHHH
Confidence 3467999999988898999999999999975421 23456788999999999999876 35666
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++++||+|+.. .....++.+.+...+... ...+++++||++|.|++++.
T Consensus 275 ~i~~~~~~~~~~-~ivv~NK~Dl~~----~~~~~~~~~~~~~~l~~~-----~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 275 RIAGLALEAGRA-LVIVVNKWDLVD----EKTMEEFKKELRRRLPFL-----DYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred HHHHHHHHcCCc-EEEEEECccCCC----HHHHHHHHHHHHHhcccc-----cCCCEEEEeCCCCCCHHHHH
Confidence 777777777888 899999999862 223444455554433322 24699999999999998764
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=127.90 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=84.2
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|++.....+.++++.+++|||||+.+|...+..+++.+|++++|+|++.+. ..+....+.
T Consensus 34 ~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-------~~~~~~~~~ 106 (668)
T PRK12740 34 TMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-------EPQTETVWR 106 (668)
T ss_pred cCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-------CHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999998876 356666777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 107 ~~~~~~~p-~iiv~NK~D~~~~ 127 (668)
T PRK12740 107 QAEKYGVP-RIIFVNKMDRAGA 127 (668)
T ss_pred HHHHcCCC-EEEEEECCCCCCC
Confidence 77778899 7999999998654
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=108.24 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=73.9
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..+...+.+|||||+.++...+..+++++|++++|+|+++.. +| .+..+.+..+. ..+.| +++++|
T Consensus 37 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~N 109 (159)
T cd04150 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RI---GEAREELQRMLNEDELRDAV-LLVFAN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhcHHhcCCC-EEEEEE
Confidence 345667889999999999999999999999999999999997642 11 11222222221 12466 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ..++.+.+ ..... ....+.++++||++|+|++++.
T Consensus 110 K~Dl~~~~~----~~~i~~~~----~~~~~-~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 110 KQDLPNAMS----AAEVTDKL----GLHSL-RNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCCCCCCC----HHHHHHHh----Ccccc-CCCCEEEEEeeCCCCCCHHHHH
Confidence 999853211 11111111 11111 1124578899999999998764
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=113.89 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=78.3
Q ss_pred hcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.+..+.....+..+ ...+.||||||+++|...+..+++++|++|+|+|+++.. +|.....|...+.... .++
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~~i~~w~~~i~~~~-~~~ 100 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYKNVPNWHRDLVRVC-ENI 100 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH---HHHHHHHHHHHHHHhC-CCC
Confidence 3333333333444443 467999999999999999999999999999999998843 2222223333333221 467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++|+||+|+....... + .+ .+.+. ..++++++||++|+||+++
T Consensus 101 p-iilvgNK~Dl~~~~v~~---~----~~-~~~~~------~~~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 101 P-IVLCGNKVDVKDRKVKA---K----SI-TFHRK------KNLQYYDISAKSNYNFEKP 145 (200)
T ss_pred C-EEEEEECcccccccCCH---H----HH-HHHHH------cCCEEEEEeCCCCCCHHHH
Confidence 8 89999999975321111 1 11 22222 2578999999999999865
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=127.41 Aligned_cols=111 Identities=30% Similarity=0.411 Sum_probs=84.1
Q ss_pred EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh---
Q psy10355 32 FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS--- 108 (156)
Q Consensus 32 ~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~--- 108 (156)
++|||||||++|...+..+++.+|++++|+|++++. .+++.+.+..+...++| +++++||+|+.. .+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~-------~~qt~e~i~~~~~~~vp-iIvviNK~D~~~-~~~~~~ 143 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF-------QPQTIEAINILKRRKTP-FVVAANKIDRIP-GWKSTE 143 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCCC-EEEEEECcCCch-hhhhhc
Confidence 799999999999999999999999999999999876 46778888888888899 899999999742 111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHcCCCCC---------CCCeEEEeecccCCCCccCC
Q psy10355 109 ---------------EARYNECKDKILPYLKKLGFNAA---------KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ---------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+.+...++...+...|+... ..++++|+||++|+|+++|.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl 210 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLL 210 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHH
Confidence 11222223334445555565431 35789999999999997653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=104.39 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=85.4
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+...++|.+........++..+.+|||||+.++.. .+...++.+|++++|+|+.++. ........
T Consensus 26 ~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------~~~~~~~~ 98 (157)
T cd01894 26 EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL-------TPADEEIA 98 (157)
T ss_pred cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC-------CccHHHHH
Confidence 34567888888888888899999999999987543 4566788999999999997754 23344555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++++||+|+..... . .. .+...+. .+++++||++|.|++++.+
T Consensus 99 ~~~~~~~~p-iiiv~nK~D~~~~~~----~---~~----~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 99 KYLRKSKKP-VILVVNKVDNIKEED----E---AA----EFYSLGF-----GEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred HHHHhcCCC-EEEEEECcccCChHH----H---HH----HHHhcCC-----CCeEEEecccCCCHHHHHH
Confidence 666667788 899999999863211 0 11 1122222 2689999999999987653
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-16 Score=108.49 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=75.3
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEE
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVV 95 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv 95 (156)
.....+..++..+.+|||||++++...+..+++++|++|+|+|+++.. ++ ......+.... ..+.| +++
T Consensus 51 ~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~---~~~~~~l~~~l~~~~~~~~p-iil 123 (181)
T PLN00223 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLV 123 (181)
T ss_pred eeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HH---HHHHHHHHHHhcCHhhCCCC-EEE
Confidence 334456778899999999999999999999999999999999998742 11 11122222221 13567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--CCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA--AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+.... ..+++.+ .+++.. ...+.++++||++|+|++++
T Consensus 124 v~NK~Dl~~~~----~~~~~~~-------~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 124 FANKQDLPNAM----NAAEITD-------KLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEECCCCCCCC----CHHHHHH-------HhCccccCCCceEEEeccCCCCCCHHHH
Confidence 99999986431 1122222 223211 12346789999999999865
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=121.35 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=93.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+|.|..+...+|.++.|.++||+|... ...++..++..||++|||+|+..|+ .+.+.+...
T Consensus 34 ~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Gi-------t~~D~~ia~ 106 (444)
T COG1160 34 TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGI-------TPADEEIAK 106 (444)
T ss_pred CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 469999999999999999999999999863 2456888899999999999999998 478888888
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.++..+.| +|+|+||+|-.. .+. ...-+-.+|+. .++++||.+|.|+..|.+
T Consensus 107 ~Lr~~~kp-viLvvNK~D~~~-------~e~----~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 107 ILRRSKKP-VILVVNKIDNLK-------AEE----LAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred HHHhcCCC-EEEEEEcccCch-------hhh----hHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 88877788 899999999431 111 11112345553 669999999999988754
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=106.42 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=74.6
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH---HHHcCCCcEEEEEe
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML---AKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ivv~N 98 (156)
...+...+..+.+|||||++++...+..+++++|++++|+|+++.. ++.....+...+.. +...++| +++++|
T Consensus 37 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~N 112 (162)
T cd04157 37 VESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---RLVVVKDELELLLNHPDIKHRRVP-ILFFAN 112 (162)
T ss_pred eEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---HHHHHHHHHHHHHcCcccccCCCC-EEEEEe
Confidence 3445667889999999999999999999999999999999998743 11000111111111 1123678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ..++.+.+ ..... ....++++++||++|+|++++.
T Consensus 113 K~Dl~~~~~----~~~~~~~l----~~~~~-~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 113 KMDLPDALT----AVKITQLL----GLENI-KDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred CccccCCCC----HHHHHHHh----CCccc-cCceEEEEEeeCCCCCchHHHH
Confidence 999864211 11111111 10000 0123578999999999998764
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=109.34 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=76.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv 95 (156)
|+......+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+. .....+.| +++
T Consensus 30 T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~~~~~~~~~~~~~~~~~~~~p-iil 105 (169)
T cd04158 30 TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RVSEAHSELAKLLTEKELRDAL-LLI 105 (169)
T ss_pred cCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HHHHHHHHHHHHhcChhhCCCC-EEE
Confidence 444444556778899999999999999999999999999999999997742 1111111111111 11112356 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+.... ...+ +..+++..+......+.++++||++|.|++++
T Consensus 106 v~NK~Dl~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 106 FANKQDVAGAL----SVEE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred EEeCcCcccCC----CHHH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 99999985321 1122 22222111110011357899999999999875
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=109.10 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=73.4
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEeC
Q psy10355 24 YFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLINK 99 (156)
Q Consensus 24 ~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~NK 99 (156)
.+...+..+.+|||||++++...+..+++++|++|+|+|+++.. +| ......+.... ..+.| +++++||
T Consensus 47 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~NK 119 (168)
T cd04149 47 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RI---DEARQELHRIINDREMRDAL-LLVFANK 119 (168)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hH---HHHHHHHHHHhcCHhhcCCc-EEEEEEC
Confidence 45567889999999999999988999999999999999998742 11 11222222221 23567 9999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|+.... ..++ +...++..... ...++++++||++|+|++++
T Consensus 120 ~Dl~~~~----~~~~----i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 120 QDLPDAM----KPHE----IQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred cCCccCC----CHHH----HHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 9975321 1122 22222111111 12357899999999999765
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=108.47 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-HHHHHHHcCCCcEEEEEeC
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-HAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~NK 99 (156)
....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+.. .+......+.| +++++||
T Consensus 49 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK 124 (173)
T cd04154 49 QIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---RLDDCKRELKELLQEERLAGAT-LLILANK 124 (173)
T ss_pred ceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEEC
Confidence 33445567889999999999999888999999999999999997742 1110111111 11111224677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.... ..++ +...++..... ...++++++||++|+|++++.
T Consensus 125 ~Dl~~~~----~~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 125 QDLPGAL----SEEE----IREALELDKIS-SHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred cccccCC----CHHH----HHHHhCccccC-CCceEEEeccCCCCcCHHHHH
Confidence 9986421 1122 22222211111 135689999999999998764
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-17 Score=108.90 Aligned_cols=121 Identities=16% Similarity=0.087 Sum_probs=87.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..|+.+......+-....++.||||+|+++|...+.++++++-++++|+|++. ..+|+....|..-.+.+...++.
T Consensus 41 TiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts---rdsfnaLtnWL~DaR~lAs~nIv- 116 (214)
T KOG0086|consen 41 TIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS---RDSFNALTNWLTDARTLASPNIV- 116 (214)
T ss_pred eeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc---hhhHHHHHHHHHHHHhhCCCcEE-
Confidence 34555555555555556789999999999999999999999999999999987 34455556666666777777777
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+|++.||.|+-. ...... .+...++++ +..-+.++||++|+|+++
T Consensus 117 viL~GnKkDL~~----~R~Vtf--lEAs~FaqE------nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 117 VILCGNKKDLDP----EREVTF--LEASRFAQE------NELMFLETSALTGENVEE 161 (214)
T ss_pred EEEeCChhhcCh----hhhhhH--HHHHhhhcc------cceeeeeecccccccHHH
Confidence 899999999852 111221 123333332 345789999999999986
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=113.35 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=81.8
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+++|..........++.++.||||||+.+. .+.+..+++.+|++++|+|++... ......+
T Consensus 29 s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--------~~~~~i~ 100 (270)
T TIGR00436 29 SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN--------GDGEFVL 100 (270)
T ss_pred CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chHHHHH
Confidence 345678887666666667788999999998542 233567789999999999998754 2223444
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.. .. .+.+.+..+....++ .+++++||++|.|+++|.
T Consensus 101 ~~l~~~~~p-~ilV~NK~Dl~~----~~---~~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 101 TKLQNLKRP-VVLTRNKLDNKF----KD---KLLPLIDKYAILEDF-----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred HHHHhcCCC-EEEEEECeeCCC----HH---HHHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHH
Confidence 555566788 899999999852 11 112222222222222 378999999999999764
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=113.16 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=76.4
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
....+....+.+|||||+++|...+..+++.+|++|+|+|.++.. +|.....+...+......++| +|+|+||+|+
T Consensus 37 ~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL 112 (220)
T cd04126 37 YLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLEELEDRFLGLTDTANEDCL-FAVVGNKLDL 112 (220)
T ss_pred EEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 334456678999999999999999999999999999999998742 222212222222211123567 8999999998
Q ss_pred CCcchh-------------HHHHHHHHHHHHHHHHHcC--------CCCCCCCeEEEeecccCCCCccCC
Q psy10355 103 PTVMWS-------------EARYNECKDKILPYLKKLG--------FNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... .....-..++...+.+..+ +.+....+++++||++|+||+++-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf 182 (220)
T cd04126 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF 182 (220)
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHH
Confidence 531000 0000001122333333332 111123689999999999998763
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=107.63 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~l~~~~~~~~~~~~~~~ 108 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLQEIDRYASENV 108 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCC
Confidence 34445555555555554 46899999999999999999999999999999998732 22222223222222222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 109 ~-~iiv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 109 N-KLLVGNKCDLTDKRVV--DYS----EAQEFADEL------GIPFLETSAKNATNVEQAF 156 (166)
T ss_pred c-EEEEEEChhcccccCC--CHH----HHHHHHHHc------CCeEEEEECCCCcCHHHHH
Confidence 7 8999999997532111 111 122233332 4689999999999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-17 Score=110.62 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=88.6
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----c
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (156)
.|..+.....+..++ ..+.||||+|+++|.+.....+|++|++++|+|... .++|+....|...+..... .
T Consensus 41 TIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~---~~Sfe~L~~Wr~EFl~qa~~~~Pe 117 (210)
T KOG0394|consen 41 TIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN---PKSFENLENWRKEFLIQASPQDPE 117 (210)
T ss_pred ccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC---hhhhccHHHHHHHHHHhcCCCCCC
Confidence 333344444444444 569999999999999999999999999999999977 4566666777765544443 2
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..| +|+++||+|+..... .....++...+|+..| ++|+|++|||.+.|++..
T Consensus 118 ~FP-FVilGNKiD~~~~~~----r~VS~~~Aq~WC~s~g-----nipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 118 TFP-FVILGNKIDVDGGKS----RQVSEKKAQTWCKSKG-----NIPYFETSAKEATNVDEA 169 (210)
T ss_pred ccc-EEEEcccccCCCCcc----ceeeHHHHHHHHHhcC-----CceeEEecccccccHHHH
Confidence 356 999999999854211 1222344566676664 789999999999998764
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=109.85 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.+..+.....+..++ ..+.+|||+|+++|...+..+++++|++++|+|.++.. +|.....+...+......
T Consensus 28 ~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~~i~~~~~~~~~~~~~ 104 (182)
T cd04128 28 DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLNSIKEWYRQARGFNKT 104 (182)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCC
Confidence 3444444444434455555 57999999999999999999999999999999998743 232222333333222122
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..| |+|+||+|+........ ...+.++...+.+.. +++++++||++|.|++++.+
T Consensus 105 ~~p--ilVgnK~Dl~~~~~~~~-~~~~~~~~~~~a~~~------~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 105 AIP--ILVGTKYDLFADLPPEE-QEEITKQARKYAKAM------KAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred CCE--EEEEEchhccccccchh-hhhhHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 333 67899999853111111 111223333444433 36899999999999988643
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=125.67 Aligned_cols=106 Identities=27% Similarity=0.298 Sum_probs=94.8
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+++.||++|+|+...-..+.|.++.+++||||||-+|....+.+++..|++++|+|+..|. +.|+...++
T Consensus 78 ~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~r 150 (721)
T KOG0465|consen 78 TMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWR 150 (721)
T ss_pred eeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHH
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDK 118 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 118 (156)
++++.++| .|..+||||+-+++.... +..+..+
T Consensus 151 Q~~ry~vP-~i~FiNKmDRmGa~~~~~-l~~i~~k 183 (721)
T KOG0465|consen 151 QMKRYNVP-RICFINKMDRMGASPFRT-LNQIRTK 183 (721)
T ss_pred HHHhcCCC-eEEEEehhhhcCCChHHH-HHHHHhh
Confidence 99999999 599999999887765443 3443333
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-16 Score=105.49 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=75.5
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHH---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAK---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ivv~ 97 (156)
...+...+..+.+|||||+.++...+..+++.+|++++|+|+++... + ....+.+. .+. ..+.| +++++
T Consensus 35 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~ 107 (158)
T cd04151 35 VETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFA 107 (158)
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEE
Confidence 34556678899999999999999999999999999999999976420 0 11112222 111 23677 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
||+|+..... ..++.+. +....+ .....+++++||++|.|++++.+
T Consensus 108 nK~Dl~~~~~----~~~i~~~----~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 108 NKQDMPGALS----EAEISEK----LGLSEL-KDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred eCCCCCCCCC----HHHHHHH----hCcccc-CCCcEEEEEeeccCCCCHHHHHH
Confidence 9999853221 1111111 111111 11245899999999999988653
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=105.50 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=89.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+.+-+++..+..+..++.||||+|+++|+..+.++++.++++|+|+|.+- +.+|+..++|...+......++- -|
T Consensus 41 gvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc---qpsfdclpewlreie~yan~kvl-ki 116 (213)
T KOG0095|consen 41 GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC---QPSFDCLPEWLREIEQYANNKVL-KI 116 (213)
T ss_pred eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc---CcchhhhHHHHHHHHHHhhcceE-EE
Confidence 444445556666677889999999999999999999999999999999977 55777788898877766666666 48
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.||+|+...-.. -+.+.+++.+ . .++-+.++||+...|++.|.
T Consensus 117 lvgnk~d~~drrev---p~qigeefs~---~------qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 117 LVGNKIDLADRREV---PQQIGEEFSE---A------QDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eeccccchhhhhhh---hHHHHHHHHH---h------hhhhhhhhcccchhhHHHHH
Confidence 99999997532111 1222222221 1 14578999999999998764
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-16 Score=122.00 Aligned_cols=124 Identities=20% Similarity=0.167 Sum_probs=88.0
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+..+|+|.+.....+.+++..+.+|||||+.+ |... +..+++.+|++++|+|++++. ..+..
T Consensus 240 s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~-------s~~~~ 312 (472)
T PRK03003 240 DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI-------SEQDQ 312 (472)
T ss_pred cCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------CHHHH
Confidence 44679999998888999999999999999742 2111 344678999999999998876 24555
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +|+|+||+|+... .......+++...+... ...+++++||++|.|++++.
T Consensus 313 ~~~~~~~~~~~p-iIiV~NK~Dl~~~----~~~~~~~~~i~~~l~~~-----~~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 313 RVLSMVIEAGRA-LVLAFNKWDLVDE----DRRYYLEREIDRELAQV-----PWAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCCh----hHHHHHHHHHHHhcccC-----CCCCEEEEECCCCCCHHHHH
Confidence 566666667888 8999999998631 11222233333222221 13689999999999998764
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=110.92 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--- 86 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (156)
.+.+..+.....+..+ ...+.+|||||+++|...+..+++++|++|+|+|.++.. +|.....|...+....
T Consensus 30 ~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~~~~~~~~~i~~~~~~~ 106 (201)
T cd04107 30 KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFEAVLKWKADLDSKVTLP 106 (201)
T ss_pred CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhccc
Confidence 3444444444444444 467899999999999999999999999999999998742 2222222322222111
Q ss_pred -HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 -TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 -~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++| +++|+||+|+..... ...+++..+++..++ .+++++||++|.|++++.
T Consensus 107 ~~~~~p-iilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 107 NGEPIP-CLLLANKCDLKKRLA------KDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAM 160 (201)
T ss_pred CCCCCc-EEEEEECCCcccccc------cCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHH
Confidence 14567 899999999852110 011224444454432 589999999999998753
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=105.22 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~ 105 (156)
....+.+|||||+++|...+..+++.+|++++|+|++++. ++. .....+..+.. .+.| +++++||+|+...
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~ 119 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKI---TYK---NLSKWYEELREYRPEIP-CIVVANKIDLDPS 119 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCc-EEEEEECccCchh
Confidence 3457899999999999999999999999999999998753 111 11112222222 2577 8999999997421
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ++...+.+.. +++++++||++|.|++++.
T Consensus 120 -----~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 120 -----VT----QKKFNFAEKH------NLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred -----HH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 01 1112222222 4689999999999998764
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-16 Score=108.51 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=78.7
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+.+..+.....+..++ ..+.+|||||+++|...+..+++.+|++++|+|+++.. +|.....|...+.....
T Consensus 27 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~ 103 (170)
T cd04108 27 KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---SLEHTRQWLEDALKEND 103 (170)
T ss_pred CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34444444444444444444 57999999999999999999999999999999997632 11111122221111111
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++++|+||+|+..... .....+....+.++. ..+++++||++|.|++++.
T Consensus 104 ~~~~~iilVgnK~Dl~~~~~----~~~~~~~~~~~~~~~------~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 104 PSSVLLFLVGTKKDLSSPAQ----YALMEQDAIKLAAEM------QAEYWSVSALSGENVREFF 157 (170)
T ss_pred CCCCeEEEEEEChhcCcccc----ccccHHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 12233899999999753211 111122233333333 3588999999999998764
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=104.42 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=77.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|.+...+.+ + ..+.+|||||+.. +......+++ .++++++|+|++.+. .....
T Consensus 50 ~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~-------~~~~~ 119 (179)
T TIGR03598 50 TPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL-------KELDL 119 (179)
T ss_pred CCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC-------CHHHH
Confidence 4566666655444 2 3799999999632 3333334444 468999999998765 24445
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
..+..+...+.| +++++||+|+.. ........+++...++..+ ..+++|++||++|+|++
T Consensus 120 ~~~~~~~~~~~p-viiv~nK~D~~~----~~~~~~~~~~i~~~l~~~~----~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 120 EMLEWLRERGIP-VLIVLTKADKLK----KSELNKQLKKIKKALKKDA----DDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHcCCC-EEEEEECcccCC----HHHHHHHHHHHHHHHhhcc----CCCceEEEECCCCCCCC
Confidence 556666667888 899999999863 2223334445555555443 24689999999999985
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-16 Score=107.28 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=72.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++++|++++|+|.++.. +|+....+...+......+.| +++++||+|+......
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 124 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVV 124 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCccccc
Confidence 367999999999999999999999999999999997632 222222333332222213456 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. .+ ....+.+.. +++++++||++|.|+++|.+
T Consensus 125 ~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 125 S--SE----RGRQLADQL------GFEFFEASAKENINVKQVFE 156 (165)
T ss_pred C--HH----HHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 0 11 122223333 35899999999999987643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-16 Score=107.78 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+......
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v 138 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQV 138 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCcc
Confidence 67999999999999999999999999999999998732 2222222222222111 12456 8999999998532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .++...+.+.. +.+++++||++|.|++++.
T Consensus 139 ~------~~~~~~~~~~~------~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 139 S------EEQAKALADKY------GIPYFETSAATGTNVEKAV 169 (180)
T ss_pred C------HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 11233334433 3589999999999998764
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-16 Score=104.65 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.+|||+|+++|.+.+.++++.+|+.++++|... ..+|+.-+.|...+.......+. +.++.||+|++..-.
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydian---kasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~ 120 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN---KASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERA 120 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc---chhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhc
Confidence 34679999999999999999999999999999999977 45666556666555444444455 788999999752100
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+ .+.-+.+.+.. ++||.++||++|-|++.
T Consensus 121 v~------~ddg~kla~~y------~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 121 VK------RDDGEKLAEAY------GIPFMETSAKTGFNVDL 150 (192)
T ss_pred cc------cchHHHHHHHH------CCCceeccccccccHhH
Confidence 00 01122222333 57999999999999874
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-16 Score=104.99 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=83.0
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ .++.+|||||+.++...+...++.+|++++|+|+++.. +|.....+...+......
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 104 (161)
T cd01861 28 QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ---SFDNTDKWIDDVRDERGN 104 (161)
T ss_pred cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCC
Confidence 4566777777777776666 46999999999999999999999999999999997743 221112222222111112
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.| +++++||+|+.... ....+ +.....+.. +++++++||++|.|++++.+
T Consensus 105 ~~~-iilv~nK~D~~~~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 105 DVI-IVLVGNKTDLSDKR--QVSTE----EGEKKAKEL------NAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred CCE-EEEEEEChhccccC--ccCHH----HHHHHHHHh------CCEEEEEeCCCCCCHHHHHH
Confidence 377 99999999984211 11111 122222222 36899999999999987643
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=115.99 Aligned_cols=119 Identities=21% Similarity=0.173 Sum_probs=81.5
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
...++|.+.....+..++.++.||||||+.+. .+....++..+|++++|+|+.+.. .......+.
T Consensus 82 ~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~-------~~~~~~il~ 154 (339)
T PRK15494 82 PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF-------DDITHNILD 154 (339)
T ss_pred CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CHHHHHHHH
Confidence 45678888777788889999999999998532 233445678999999999987654 122334455
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| .++|+||+|+... ...+ +...+...+ ...+++++||++|.|++.|.
T Consensus 155 ~l~~~~~p-~IlViNKiDl~~~-----~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 155 KLRSLNIV-PIFLLNKIDIESK-----YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred HHHhcCCC-EEEEEEhhcCccc-----cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHH
Confidence 55566778 5889999998531 1222 222233221 13589999999999998753
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=124.43 Aligned_cols=95 Identities=28% Similarity=0.381 Sum_probs=85.1
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..+++||||||.+|...+..+++.+|++++|+|++++. ..+....+.
T Consensus 47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~-------~~~~~~~~~ 119 (687)
T PRK13351 47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV-------QPQTETVWR 119 (687)
T ss_pred cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999998876 356677777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+...++| +++++||+|+..++
T Consensus 120 ~~~~~~~p-~iiviNK~D~~~~~ 141 (687)
T PRK13351 120 QADRYGIP-RLIFINKMDRVGAD 141 (687)
T ss_pred HHHhcCCC-EEEEEECCCCCCCC
Confidence 77778899 79999999987653
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=106.88 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..++..+.+|||||+.++...+..+++++|++|+|+|+++.. ++ ....+.+..+. ..+.| +++++|
T Consensus 50 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~---s~---~~~~~~l~~~~~~~~~~~~p-iilv~N 122 (175)
T smart00177 50 ETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD---RI---DEAREELHRMLNEDELRDAV-ILVFAN 122 (175)
T ss_pred EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH---HH---HHHHHHHHHHhhCHhhcCCc-EEEEEe
Confidence 345567889999999999999999999999999999999998742 11 11222222221 13467 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|+..... ..++.+.+ ...... ...+.++++||++|+|++++
T Consensus 123 K~Dl~~~~~----~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 123 KQDLPDAMK----AAEITEKL----GLHSIR-DRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred CcCcccCCC----HHHHHHHh----CccccC-CCcEEEEEeeCCCCCCHHHH
Confidence 999853211 11222211 111111 12456889999999999875
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=105.93 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=79.7
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.++.+.....+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|....++...+......+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 109 (167)
T cd01867 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFENIRNWMRNIEEHASEDV 109 (167)
T ss_pred ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCC
Confidence 33444444444444444 57899999999999888889999999999999997743 23222333333333222456
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..++ .....+.. ..+++++||++|.|++++.
T Consensus 110 p-~iiv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 110 E-RMLVGNKCDMEEKRVV--SKEE----GEALADEY------GIKFLETSAKANINVEEAF 157 (167)
T ss_pred c-EEEEEECcccccccCC--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 8999999998632111 1111 22222332 3589999999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-17 Score=124.19 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=93.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|++..|||||+|+...-.++.|.++.++++|||||-+|.-..+..++..|+++.|+|++.|. ..++...|++
T Consensus 77 tdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrq 149 (753)
T KOG0464|consen 77 TDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQ 149 (753)
T ss_pred HHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehh
Confidence 588899999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
..+.++| -++.+||||...+++.. ..+.+.+++
T Consensus 150 adk~~ip-~~~finkmdk~~anfe~-avdsi~ekl 182 (753)
T KOG0464|consen 150 ADKFKIP-AHCFINKMDKLAANFEN-AVDSIEEKL 182 (753)
T ss_pred ccccCCc-hhhhhhhhhhhhhhhhh-HHHHHHHHh
Confidence 9999999 48999999987655433 244444433
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=109.10 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||+.++...+..+++.+|++|+|+|++... +|.....+...+......++| +++++||+|+......
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV 124 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc
Confidence 357999999999999988889999999999999997642 121112222222222223567 8999999997521110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .. +...+.+.. +.+++++||++|.|+++|.
T Consensus 125 ~--~~----~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 125 K--RE----DGERLAKEY------GVPFMETSAKTGLNVELAF 155 (191)
T ss_pred C--HH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 11 122222322 3589999999999998764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=105.88 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----Hc
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TA 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~ 88 (156)
.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+.... ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~ 113 (170)
T cd04116 37 TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQNLSNWKKEFIYYADVKEPE 113 (170)
T ss_pred ceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccccCC
Confidence 333333333444444 56889999999999999999999999999999997642 2222222332222211 13
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+...... .+++..+++..+ ..+++++||++|.|+.++.
T Consensus 114 ~~p-iilv~nK~Dl~~~~~~-------~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 114 SFP-FVVLGNKNDIPERQVS-------TEEAQAWCRENG-----DYPYFETSAKDATNVAAAF 163 (170)
T ss_pred CCc-EEEEEECccccccccC-------HHHHHHHHHHCC-----CCeEEEEECCCCCCHHHHH
Confidence 467 8999999997522111 122333444443 2588999999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=106.03 Aligned_cols=106 Identities=22% Similarity=0.177 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. +|....++...+......+.| +++++||+|+.....
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~- 126 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE- 126 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccC-
Confidence 467999999999999988899999999999999998632 222222222222222223577 899999999752211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... +...+.... +++++++||++|+|++++
T Consensus 127 -~~~~----~~~~~~~~~------~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 127 -VSYE----EGEAFAKEH------GLIFMETSAKTASNVEEA 157 (168)
T ss_pred -CCHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 0111 122233333 468999999999999875
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-16 Score=110.81 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=93.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+++..|....+.++..+..+..++ .+.+||||+|+++|+..+.++++++-++++|+|.+.. ..|+...+|...+
T Consensus 36 rnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~---~Tfenv~rWL~EL 112 (222)
T KOG0087|consen 36 RNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR---QTFENVERWLKEL 112 (222)
T ss_pred ccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhH---HHHHHHHHHHHHH
Confidence 3555566666677777777776666 5689999999999999999999999999999999874 3444455666666
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.-...+++ +++|.||+||...-..+ . ++.+.+.+. ++..|+++||+.+.|++..
T Consensus 113 Rdhad~niv-imLvGNK~DL~~lraV~--t----e~~k~~Ae~------~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 113 RDHADSNIV-IMLVGNKSDLNHLRAVP--T----EDGKAFAEK------EGLFFLETSALDATNVEKA 167 (222)
T ss_pred HhcCCCCeE-EEEeecchhhhhccccc--h----hhhHhHHHh------cCceEEEecccccccHHHH
Confidence 655556888 89999999974210001 1 112222222 2468999999999998764
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=109.41 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=81.9
Q ss_pred HHHhhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
..+..+.++.+.....+..+ ...+.+|||||++.+...+..+++.+|++|+|+|+++.. +|.....+...+...
T Consensus 26 ~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~~~~~~w~~~l~~~ 102 (215)
T cd04109 26 GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SFENLEDWYSMVRKV 102 (215)
T ss_pred CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHh
Confidence 34445555556555555553 367999999999999999999999999999999998742 222222333333322
Q ss_pred HH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+.... . ...++...+.+.. +++++++||++|+|++.+.
T Consensus 103 ~~~~~~~~p-iilVgNK~DL~~~~--~----v~~~~~~~~~~~~------~~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 103 LKSSETQPL-VVLVGNKTDLEHNR--T----VKDDKHARFAQAN------GMESCLVSAKTGDRVNLLF 158 (215)
T ss_pred ccccCCCce-EEEEEECccccccc--c----cCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 21 1234 89999999985211 1 0111233333333 3588999999999998764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=125.93 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=82.0
Q ss_pred CccccHHHhhcCceeeeeeEE----EEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAY----FETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~----~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+|+.++|+++|+|+...... +.++++++++||||||.+|...+..+++.+|++++|+|+..+. ..++.
T Consensus 56 ~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-------~~~t~ 128 (720)
T TIGR00490 56 YLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-------MPQTE 128 (720)
T ss_pred ecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-------CccHH
Confidence 368899999999999977654 5678899999999999999999999999999999999999887 46778
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.++..+...++| .++++||+|+...
T Consensus 129 ~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 129 TVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred HHHHHHHHcCCC-EEEEEEChhcccc
Confidence 888887778888 6899999998644
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-16 Score=105.70 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=80.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+..++ ..+.+|||||++++...+..+++.++++++|+|+++.. +|.....+...+......+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~ 108 (165)
T cd01868 32 SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFENVERWLKELRDHADSN 108 (165)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCC
Confidence 344555555555565555 46899999999999999999999999999999997632 2221222222222222234
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++++||+|+...... .. ++...++... +++++++||++|+|++.+.
T Consensus 109 ~p-i~vv~nK~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 109 IV-IMLVGNKSDLRHLRAV--PT----EEAKAFAEKN------GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred Ce-EEEEEECccccccccC--CH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 67 8999999997532111 11 1222333322 4689999999999998764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-16 Score=105.42 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=82.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.+|||+|+++|...+..++++++++|+++|.+. +.+|...+.|...+....-.+.+ +|+++||+|+-.-
T Consensus 68 kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN---eeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~e-- 141 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN---EESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSE-- 141 (193)
T ss_pred cEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC---HHHHHHHHHHHHHheeeeccCce-EEEEecccCCccc--
Confidence 44679999999999999999999999999999999987 44555455666666555556788 9999999997421
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .-..+....+.+++|| .+|++||+...|+..+-
T Consensus 142 ---R-vis~e~g~~l~~~LGf------efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 142 ---R-VISHERGRQLADQLGF------EFFETSAKENINVKQVF 175 (193)
T ss_pred ---e-eeeHHHHHHHHHHhCh------HHhhhcccccccHHHHH
Confidence 1 1112334556677764 78999999999987653
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=114.22 Aligned_cols=136 Identities=29% Similarity=0.411 Sum_probs=111.5
Q ss_pred cccHHHhhcCceeeeeeEEEEe---------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc
Q psy10355 6 LWLRQKREKGKTVEVGRAYFET---------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG 76 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~---------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~ 76 (156)
|.-+..++||+|.+..+..+.. +.-+++++|+|||..+++..+.+..-.|..++|+|+..|. +.
T Consensus 37 Dk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------Qt 109 (522)
T KOG0461|consen 37 DKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QT 109 (522)
T ss_pred ccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------cc
Confidence 5667889999999988887764 3357899999999999999999999999999999999988 57
Q ss_pred chHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC----CCCccCC
Q psy10355 77 QTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE----KNPLLLG 151 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g----~gi~~l~ 151 (156)
++.+++......-.. .|+|+||+|...-+.....++++.+++..-++..++.. +.|++++||+.| ++|.+|+
T Consensus 110 QtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~ 185 (522)
T KOG0461|consen 110 QTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELK 185 (522)
T ss_pred ccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHH
Confidence 888887665555445 79999999987655556667778888888888888863 589999999999 6666554
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-16 Score=106.51 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=81.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHL 93 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 93 (156)
|+.+..+...+.....++.||||+|+++|+..+.+++++|.++|+|+|.+.. ..|.....|...+..... .++- .
T Consensus 45 GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R---dtf~kLd~W~~Eld~Ystn~dii-k 120 (209)
T KOG0080|consen 45 GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR---DTFVKLDIWLKELDLYSTNPDII-K 120 (209)
T ss_pred eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch---hhHHhHHHHHHHHHhhcCCccHh-H
Confidence 4444444444555567899999999999999999999999999999999873 344444444444432222 2344 4
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++|.||+|.-. ....-+++-..+.+.++ +-|+++||++.+|+...
T Consensus 121 mlVgNKiDkes------~R~V~reEG~kfAr~h~------~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 121 MLVGNKIDKES------ERVVDREEGLKFARKHR------CLFIECSAKTRENVQCC 165 (209)
T ss_pred hhhcccccchh------cccccHHHHHHHHHhhC------cEEEEcchhhhccHHHH
Confidence 77999999531 11122344555666653 58999999999998653
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-16 Score=106.73 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=75.3
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEeC
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLINK 99 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~NK 99 (156)
...+...+..+.+|||||+.++...+..+++++|++++|+|+++.. +| ......+..+. ..++| +++++||
T Consensus 36 ~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~---~~~~~~l~~~~~~~~~~p-iilv~NK 108 (164)
T cd04162 36 SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RL---PLARQELHQLLQHPPDLP-LVVLANK 108 (164)
T ss_pred eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEeC
Confidence 4556677889999999999999999999999999999999997742 11 11112122221 24677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc------CCCCccC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL------EKNPLLL 150 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~------g~gi~~l 150 (156)
+|+.... ...++.+.+ ....+....+++++++||++ ++|+.++
T Consensus 109 ~Dl~~~~----~~~~i~~~~----~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 109 QDLPAAR----SVQEIHKEL----ELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred cCCcCCC----CHHHHHHHh----CChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 9985321 122222111 11112112357899999998 8888765
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=104.89 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=77.4
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|.+.......+...+..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+......+.| ++
T Consensus 35 ~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-ii 110 (163)
T cd01860 35 GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---SFEKAKSWVKELQRNASPNII-IA 110 (163)
T ss_pred ceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-EE
Confidence 43344444455545577999999999999888888999999999999997642 121112222222222113466 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++||+|+...... ... ....+.... +++++++||++|.|++++.
T Consensus 111 vv~nK~D~~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 111 LVGNKADLESKRQV--STE----EAQEYADEN------GLLFFETSAKTGENVNELF 155 (163)
T ss_pred EEEECccccccCcC--CHH----HHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 99999997532110 111 122333333 3589999999999998764
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=124.35 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=84.1
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH------HHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN------MIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~------~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+|+|++.....+.+++.++.+|||||+.++... +..++ ..+|++++|+|+++. .+.....
T Consensus 22 ~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~ 92 (591)
T TIGR00437 22 GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLT 92 (591)
T ss_pred cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHH
Confidence 346799999999999999999999999999876432 22222 478999999999763 2334444
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+....+.| +++++||+|+........ ....+.+.. +.+++++||++|+|++++.+
T Consensus 93 ~ql~~~~~P-iIIVlNK~Dl~~~~~i~~-------d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 93 LQLLELGIP-MILALNLVDEAEKKGIRI-------DEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred HHHHhcCCC-EEEEEehhHHHHhCCChh-------hHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 555567888 899999999753211111 122222333 46899999999999998754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=107.87 Aligned_cols=111 Identities=10% Similarity=0.118 Sum_probs=72.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++++|++|+|+|.++.. +|+... .|...+.. ...++| +++|+||.|+......
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~~~w~~~i~~-~~~~~p-iilvgNK~DL~~~~~~ 125 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVRHKWHPEVCH-HCPNVP-ILLVGTKKDLRNDADT 125 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEEeChhhhcChhh
Confidence 56999999999999999999999999999999998743 333222 12222221 124677 8999999998532110
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+.+ ..++...+.+..+ .++++++||++|+|++++
T Consensus 126 ~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 126 LKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEV 168 (191)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHH
Confidence 000000 0112233333332 258999999999999875
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-16 Score=110.86 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=77.8
Q ss_pred hhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.+..+.....+.. ....+.+|||||+++|...+..+++.+|++|+|+|.++.. +|.....|...+... ..+
T Consensus 42 ~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~~i~~w~~~i~~~-~~~ 117 (219)
T PLN03071 42 YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRV-CEN 117 (219)
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHHHHHHHHHHHHHh-CCC
Confidence 3333333333334433 3468999999999999988889999999999999998743 222222333333222 246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+| +++|+||+|+....... + .+ .+.+. ..++++++||++|+|++++
T Consensus 118 ~p-iilvgNK~Dl~~~~v~~---~----~~-~~~~~------~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 118 IP-IVLCGNKVDVKNRQVKA---K----QV-TFHRK------KNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred Cc-EEEEEEchhhhhccCCH---H----HH-HHHHh------cCCEEEEcCCCCCCCHHHH
Confidence 77 89999999975321111 1 11 22222 2468999999999999875
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=103.77 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=78.1
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHH---HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAK---TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 92 (156)
|.......+..++..+.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+. .+. ..+.|
T Consensus 46 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~---~~---~~~~~~l~~~~~~~~~~~~p- 118 (174)
T cd04153 46 TIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE---RL---PLTKEELYKMLAHEDLRKAV- 118 (174)
T ss_pred ccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhcCCC-
Confidence 444455667778899999999999999999999999999999999998742 11 11112122 111 13567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... . ..++.+.+. ..... ...++++++||++|+|++++.
T Consensus 119 ~viv~NK~Dl~~~~-~---~~~i~~~l~----~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 119 LLVLANKQDLKGAM-T---PAEISESLG----LTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEEEEECCCCCCCC-C---HHHHHHHhC----ccccc-CCceEEEecccCCCCCHHHHH
Confidence 89999999985421 1 122222211 00000 124689999999999998763
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=103.76 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=78.8
Q ss_pred hcCceeeeeeEEEEeC----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 13 EKGKTVEVGRAYFETD----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+++..+.....+... ...+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+. ....
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~~l~~~~~~~~-~~~~ 105 (162)
T cd04106 30 KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFEAIESWKEKVE-AECG 105 (162)
T ss_pred CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHH-HhCC
Confidence 3444444433444443 467999999999999999999999999999999997743 2221122222221 1123
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+....... . ++...+.+.. +++++++||++|.|++++.
T Consensus 106 ~~p-~iiv~nK~Dl~~~~~v~--~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 106 DIP-MVLVQTKIDLLDQAVIT--N----EEAEALAKRL------QLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred CCC-EEEEEEChhcccccCCC--H----HHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 678 89999999975321110 1 1223333333 3589999999999998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=106.47 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=72.9
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||+++|...+..+++++|++|+|+|.++.. +|.... .|...+... ..+.| +++|+||+|
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~~~~~w~~~i~~~-~~~~p-iilvgnK~D 116 (175)
T cd01874 42 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKEKWVPEITHH-CPKTP-FLLVGTQID 116 (175)
T ss_pred EEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEECHh
Confidence 44445 67899999999999888888999999999999998743 222111 122222211 23567 899999999
Q ss_pred CCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.........+.. ..++...+.+..+ .++++++||++|+|++++-
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVF 167 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHH
Confidence 7532110000000 0011222222222 3689999999999998753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=103.43 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+++..+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|.++. .+|+....+...+......+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~sf~~~~~~~~~~~~~~~~~~ 106 (161)
T cd04117 30 ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE---RSYQHIMKWVSDVDEYAPEGV 106 (161)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCC
Confidence 34444444444555555 5689999999999998899999999999999999773 333333333333322222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||.|+....... .++...+.+.. +.+++++||++|.|++++.
T Consensus 107 ~-iilvgnK~Dl~~~~~v~------~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 107 Q-KILIGNKADEEQKRQVG------DEQGNKLAKEY------GMDFFETSACTNSNIKESF 154 (161)
T ss_pred e-EEEEEECcccccccCCC------HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 89999999975321100 11122223333 3589999999999998764
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=103.33 Aligned_cols=124 Identities=18% Similarity=0.097 Sum_probs=79.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. +++...++...+......+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~l~~~~~~~~~~ 105 (164)
T smart00175 29 YKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE---SFENLKNWLKELREYADPN 105 (164)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCC
Confidence 334455555555566655 57899999999999999999999999999999997743 1111111222111111135
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+..... ...+. ...+.+.. +++++++||++|.|++++.
T Consensus 106 ~p-ivvv~nK~D~~~~~~--~~~~~----~~~~~~~~------~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 106 VV-IMLVGNKSDLEDQRQ--VSREE----AEAFAEEH------GLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred Ce-EEEEEEchhcccccC--CCHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 77 899999999753111 01111 22233333 4579999999999998754
|
Rab GTPases are implicated in vesicle trafficking. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=118.52 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=86.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.....+.+.+..+.+|||||+.. +...+..+++.+|++|+|+|++++. ........
T Consensus 67 ~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~-------s~~~~~i~ 139 (472)
T PRK03003 67 EDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA-------TATDEAVA 139 (472)
T ss_pred cCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHH
Confidence 45789999999999999999999999999863 4455677889999999999998875 23344555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.... . + ...+ ...++. ..+++||++|.|+++|.
T Consensus 140 ~~l~~~~~p-iilV~NK~Dl~~~~--~----~----~~~~-~~~g~~-----~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 140 RVLRRSGKP-VILAANKVDDERGE--A----D----AAAL-WSLGLG-----EPHPVSALHGRGVGDLL 191 (472)
T ss_pred HHHHHcCCC-EEEEEECccCCccc--h----h----hHHH-HhcCCC-----CeEEEEcCCCCCcHHHH
Confidence 666667888 89999999975321 1 0 1111 123331 34799999999998864
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-15 Score=100.80 Aligned_cols=125 Identities=26% Similarity=0.205 Sum_probs=84.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-----------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-----------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-----------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..++++.+.....+..++..+.+|||||+.+.. .....+++.+|++++|+|+..+. ......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~ 104 (174)
T cd01895 32 DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI-------TEQDLR 104 (174)
T ss_pred CCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc-------chhHHH
Confidence 356777777777788888899999999975431 12345678999999999998765 233344
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++++||+|+.... ........+.+...+... ...+++++||++|+|++++.
T Consensus 105 ~~~~~~~~~~~-~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 105 IAGLILEEGKA-LVIVVNKWDLVEKD--SKTMKEFKKEIRRKLPFL-----DYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred HHHHHHhcCCC-EEEEEeccccCCcc--HHHHHHHHHHHHhhcccc-----cCCceEEEeccCCCCHHHHH
Confidence 45555556777 89999999986421 112333333333322211 23689999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=101.27 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=72.3
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+.... ..+.| +++++||+|
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~D 117 (162)
T cd04138 42 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFEDIHTYREQIKRVKDSDDVP-MVLVGNKCD 117 (162)
T ss_pred EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44444 45888999999999999999999999999999997632 1211111222222111 23567 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... .++...+.+.. +++++++||++|.|++++.
T Consensus 118 l~~~~~~-------~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 118 LAARTVS-------SRQGQDLAKSY------GIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred cccceec-------HHHHHHHHHHh------CCeEEEecCCCCCCHHHHH
Confidence 8642111 11222333333 3589999999999998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-16 Score=107.60 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=73.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
..++.+|||+|+++|...+..+++++|++|+|+|.++. .+|... ..|...+... ..++| +++|+||+|+.....
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~---~Sf~~~~~~w~~~i~~~-~~~~p-iilvgnK~Dl~~~~~ 122 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR---ASYENVLKKWVPELRHY-APNVP-IVLVGTKLDLRDDKQ 122 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH---HHHHHHHHHHHHHHHHh-CCCCC-EEEEEeChhhccChh
Confidence 36799999999999999999999999999999999874 334332 2333333222 23577 899999999843110
Q ss_pred hH----HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SE----ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .......++...+.+..+. .+++++||++|.||+++-
T Consensus 123 ~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 123 YLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 165 (176)
T ss_pred hhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHH
Confidence 00 0000012223333343321 269999999999998753
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=105.64 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=73.8
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ivv~ 97 (156)
...+...+..+.+|||||++++...+..+++++|++|+|+|+++.. +|. .....+... . ..+.| +++++
T Consensus 53 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~~---~~~~~l~~~~~~~~~~~~p-iilv~ 125 (182)
T PTZ00133 53 VETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RIG---DAREELERMLSEDELRDAV-LLVFA 125 (182)
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhCHhhcCCC-EEEEE
Confidence 3455668899999999999999999999999999999999997632 111 122222222 1 12456 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||.|+..... ..++.+.+ ....+ ....+.++++||++|+|++++.
T Consensus 126 NK~Dl~~~~~----~~~i~~~l----~~~~~-~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 126 NKQDLPNAMS----TTEVTEKL----GLHSV-RQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred eCCCCCCCCC----HHHHHHHh----CCCcc-cCCcEEEEeeeCCCCCCHHHHH
Confidence 9999753211 11221111 11111 1123567899999999998753
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=105.29 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++|+|+|.++.. +|.... .+...+.. ...+.| +++|+||+|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~~~~~~~~~~~~~-~~~~~p-iilvgnK~Dl~~~~~~ 123 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENVRAKWYPEVRH-HCPNTP-IILVGTKLDLRDDKDT 123 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEeeChhhccChhh
Confidence 57899999999999988889999999999999998742 222111 12222221 123577 8999999998532111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.....+ ..++...+.+..+ ..+++++||++|+|++++-+
T Consensus 124 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 124 IEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHHH
Confidence 111100 0122233444442 24899999999999987643
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=102.34 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++||+
T Consensus 42 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~ 117 (164)
T cd04145 42 QCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFEEVDKFHTQILRVKDRDEFP-MILVGNKA 117 (164)
T ss_pred EEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCC-EEEEeeCc
Confidence 344444 46889999999999999999999999999999998742 222222232222222 123677 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+...... .. +....+++.. +++++++||++|.|++++.
T Consensus 118 Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 118 DLEHQRKV--SR----EEGQELARKL------KIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ccccccee--cH----HHHHHHHHHc------CCcEEEeeCCCCCCHHHHH
Confidence 98532110 11 1122333332 3589999999999998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=105.25 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||..+|...+..+++.+|++++|+|.++.. +|.....+...+.... ..++| +++|+||+|
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~D 118 (172)
T cd04141 43 ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SFQEASEFKKLITRVRLTEDIP-LVLVGNKVD 118 (172)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEChh
Confidence 34444 56999999999999999999999999999999998743 3332233333333332 24577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..... .. .++...+.+.. +++++++||++|.|++++
T Consensus 119 l~~~~~----v~--~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 119 LESQRQ----VT--TEEGRNLAREF------NCPFFETSAALRHYIDDA 155 (172)
T ss_pred hhhcCc----cC--HHHHHHHHHHh------CCEEEEEecCCCCCHHHH
Confidence 742110 00 11122233333 468999999999999875
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=105.04 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+..+.+|||||++++...+..+++++|++++|+|+++.. ++.....+. +........+.| +++++||+|+....
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~ 125 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNAL 125 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccC
Confidence 4578999999999999999999999999999999997742 110001111 122222335678 89999999975311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+ +...+..........++++++||++|+|++++.
T Consensus 126 -~---~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 162 (183)
T cd04152 126 -S---VSE----VEKLLALHELSASTPWHVQPACAIIGEGLQEGL 162 (183)
T ss_pred -C---HHH----HHHHhCccccCCCCceEEEEeecccCCCHHHHH
Confidence 1 111 111111111111123578999999999998763
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=103.43 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=77.9
Q ss_pred hhcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--
Q psy10355 12 REKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (156)
..+.++.+.....+..+ ...+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+.....
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~~~~~~~~ 105 (168)
T cd04119 29 YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFEALDSWLKEMKQEGGPH 105 (168)
T ss_pred CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccc
Confidence 34444444444444443 467999999999999988999999999999999998742 22212223332222221
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+..... ....+ ...+.+.. +.+++++||++|.|++++.
T Consensus 106 ~~~~~~p-iilv~nK~Dl~~~~~--~~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 106 GNMENIV-VVVCANKIDLTKHRA--VSEDE----GRLWAESK------GFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ccCCCce-EEEEEEchhcccccc--cCHHH----HHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 3456 899999999752110 01111 22222332 3589999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=103.83 Aligned_cols=112 Identities=20% Similarity=0.124 Sum_probs=73.4
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. +|+....+...+... ...+.| +++++||+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 116 (164)
T cd04175 41 QVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKC 116 (164)
T ss_pred EEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECC
Confidence 444444 45789999999999999999999999999999987632 222122222222211 124578 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+....... .. ....+.+.. +++++++||++|.|++++.
T Consensus 117 Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 117 DLEDERVVG--KE----QGQNLARQW------GCAFLETSAKAKINVNEIF 155 (164)
T ss_pred cchhccEEc--HH----HHHHHHHHh------CCEEEEeeCCCCCCHHHHH
Confidence 985321111 11 122222332 3689999999999998753
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-15 Score=100.75 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=88.9
Q ss_pred hcCceeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC-C
Q psy10355 13 EKGKTVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG-V 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 90 (156)
.|.+|+..-++.+...+ ..++++|||||++|.-+|....+++.++|+++|++++. ......++......+ +
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~-------~~~a~~ii~f~~~~~~i 122 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI-------TFHAEEIIDFLTSRNPI 122 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc-------chHHHHHHHHHhhccCC
Confidence 44589999999999877 89999999999999999999999999999999999875 123355566666666 6
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
| +++++||.|+..+...+ .+++.+ +... ...|+|+++|..+++..+
T Consensus 123 p-~vVa~NK~DL~~a~ppe----~i~e~l----~~~~----~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 123 P-VVVAINKQDLFDALPPE----KIREAL----KLEL----LSVPVIEIDATEGEGARD 168 (187)
T ss_pred C-EEEEeeccccCCCCCHH----HHHHHH----Hhcc----CCCceeeeecccchhHHH
Confidence 7 89999999997553322 222222 2111 157999999999887653
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=116.24 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=88.9
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCC--------cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGH--------KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~--------~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+.+..+.+|||||+ +.+...+..+++.+|++++|+|+..+. .....+...
T Consensus 29 ~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~-------~~~d~~i~~ 101 (429)
T TIGR03594 29 DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGL-------TPEDEEIAK 101 (429)
T ss_pred CCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CHHHHHHHH
Confidence 35799999999999999999999999997 334566788899999999999998876 355666777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+...... ... +..+++ .+++++||++|.|+++|.
T Consensus 102 ~l~~~~~p-iilVvNK~D~~~~~~~----------~~~-~~~lg~-----~~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 102 WLRKSGKP-VILVANKIDGKKEDAV----------AAE-FYSLGF-----GEPIPISAEHGRGIGDLL 152 (429)
T ss_pred HHHHhCCC-EEEEEECccCCccccc----------HHH-HHhcCC-----CCeEEEeCCcCCChHHHH
Confidence 77777888 8999999997532110 111 122333 368999999999998753
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=103.06 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=76.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCC
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVK 91 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 91 (156)
..|.+.......+......+.+|||||++++.......++.+|++++|+|+++.. +|.....+...+... ...+.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~ 108 (161)
T cd01863 32 TIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD---TFTNLETWLNELETYSTNNDIV 108 (161)
T ss_pred cccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhCCCCCCc
Confidence 3334333333333333467999999999999888888999999999999997643 111111122211111 224567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+....... ++...+.+.. +++++++||++|+|++++.
T Consensus 109 -~~iv~nK~D~~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 109 -KMLVGNKIDKENREVTR-------EEGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred -EEEEEECCcccccccCH-------HHHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 89999999986322221 1122333332 4689999999999998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=104.81 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCcc
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+.+|||||+++|...+..+++.+|++++|+|.++.. +|.....+...+..... .+.| +++|+||+|+....
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~ 122 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS---TFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYER 122 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccC
Confidence 45889999999999999999999999999999997743 22212223332322221 3567 89999999975311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 123 ~v--~~~~----~~~~~~~~------~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 123 EV--STEE----GAALARRL------GCEFIEASAKTNVNVERAF 155 (190)
T ss_pred cc--CHHH----HHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 10 0111 22222332 3589999999999998753
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=102.47 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=77.2
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH----HHHcCCCcE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML----AKTAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 93 (156)
.......+.+++..+.+|||||+..+...+..+++.+|++++|+|++... ++ ......+.. ....+.| +
T Consensus 31 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-i 103 (158)
T cd00878 31 IGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---RI---EEAKEELHKLLNEEELKGVP-L 103 (158)
T ss_pred cCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCcccCCCc-E
Confidence 33444456667889999999999999888999999999999999998752 00 111222221 1124677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++++||+|+.... ..+++.+.+.. ... ....++++++||++|.|++++
T Consensus 104 iiv~nK~D~~~~~----~~~~~~~~~~~----~~~-~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 104 LIFANKQDLPGAL----SVSELIEKLGL----EKI-LGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred EEEeeccCCcccc----CHHHHHHhhCh----hhc-cCCcEEEEEeeCCCCCCHHHH
Confidence 9999999986422 12222222211 101 112568999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=102.69 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||+++|...+..+++.+|++++|+|.++.. +|....++.+.+..... .++| +++|+||+|+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ---SLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESH 122 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccc
Confidence 4467999999999999988888999999999999997743 12111222222222221 3577 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .. ....+.... ..+++++||++|+|++++.
T Consensus 123 ~~~v~--~~----~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 123 KREVS--SN----EGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred cCeec--HH----HHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 11100 11 111122222 3588999999999998764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=103.06 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=75.2
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcE
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 93 (156)
+......+..++..+.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+..+. ..+.| +
T Consensus 31 ~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~---~~~~~~l~~l~~~~~~~~~p-i 103 (167)
T cd04161 31 VGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RV---QEVKEILRELLQHPRVSGKP-I 103 (167)
T ss_pred ccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HH---HHHHHHHHHHHcCccccCCc-E
Confidence 33444566778899999999999999999999999999999999998742 11 11122222221 13667 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHH--HHHHHHcCCCCCCCCeEEEeecccC------CCCcc
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKI--LPYLKKLGFNAAKDLSFMPCSGELE------KNPLL 149 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~Sa~~g------~gi~~ 149 (156)
++++||+|+..... ..++.+.+ ..+.+..+ ..++++++||++| .|+.+
T Consensus 104 liv~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 104 LVLANKQDKKNALL----GADVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred EEEEeCCCCcCCCC----HHHHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 99999999864321 11212111 11111111 2468899999998 66653
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=102.75 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++++|++++|+|.++.. +|.....+...+.... ..++| +++++||+|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~ 124 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREV 124 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCcc
Confidence 45889999999999999999999999999999998742 2211122222222111 14678 8999999997531110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... +...+.+.. +.+++++||++|.|++++.
T Consensus 125 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 125 --SSA----EGRALAEEW------GCPFMETSAKSKTMVNELF 155 (163)
T ss_pred --CHH----HHHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 001 112222222 3589999999999998753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=106.04 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||+|+++|...+..+++++|++++|+|.++. .+|... ..|...+.... .+.| +++|+||+|+.....
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~---~Sf~~~~~~w~~~i~~~~-~~~p-iilVgNK~DL~~~~~ 126 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFC-PNTK-MLLVGCKSDLRTDLT 126 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHC-CCCC-EEEEeEChhhhcChh
Confidence 35699999999999999999999999999999999874 233322 23333333221 3567 899999999742100
Q ss_pred hH------HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccCC
Q psy10355 108 SE------ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLLG 151 (156)
Q Consensus 108 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l~ 151 (156)
.. ....-..++...+.+..++ .+++++||++|+| ++++-
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 172 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHH
Confidence 00 0000011234444454431 4899999999998 87653
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=106.39 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
.+..++++.+.....+.+++ ..+.+|||||..++. .....+++.+|++++|+|+++.. +|+....+.
T Consensus 27 ~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~~~~~~~~ 103 (198)
T cd04142 27 EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SFHYVKLLR 103 (198)
T ss_pred cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HHHHHHHHH
Confidence 33444444443333444555 568899999986542 12345678999999999998743 221111222
Q ss_pred HHHHHHH---HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAK---TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~---~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.... ..++| +++|+||+|+....... .+ .+..+.+.. .+++++++||++|.|+++|-
T Consensus 104 ~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~--~~----~~~~~~~~~-----~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 104 QQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP--RH----VLSVLVRKS-----WKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred HHHHHhcccCCCCCC-EEEEEECcccccccccc--HH----HHHHHHHHh-----cCCcEEEecCCCCCCHHHHH
Confidence 2222221 24577 89999999985321111 11 122222211 24689999999999998764
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=102.93 Aligned_cols=122 Identities=17% Similarity=0.092 Sum_probs=79.4
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+...++.+|++++|+|+++.. +|.....+...+......+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~ 107 (161)
T cd04113 31 HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRT---SFEALPTWLSDARALASPNIV 107 (161)
T ss_pred CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe
Confidence 3344444444444444 56899999999999988999999999999999998743 222122333333333334677
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... ... .++...+.+.. +++++++||++|.|++++-
T Consensus 108 -iivv~nK~D~~~~~--~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 108 -VILVGNKSDLADQR--EVT----FLEASRFAQEN------GLLFLETSALTGENVEEAF 154 (161)
T ss_pred -EEEEEEchhcchhc--cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 89999999975311 001 11222333333 3689999999999998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-15 Score=100.25 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH----HHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML----AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ivv~NK~Dl~ 103 (156)
....+.+|||||+.++...+..+++.+|++++|+|+++.. ++ ......+.. ....+.| +++++||+|+.
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---RL---DESQKELKHILKNEHIKGVP-VVLLANKQDLP 114 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---HH---HHHHHHHHHHHhchhhcCCC-EEEEEECcccc
Confidence 3568999999999999988999999999999999997742 11 111111111 1124678 89999999985
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.... ..+ +...+....+....+++++++||++|+|++++.+
T Consensus 115 ~~~~----~~~----i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 115 GALT----AEE----ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred cCcC----HHH----HHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 3211 112 2111111111111246899999999999987643
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=104.41 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=69.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+...++.+|++|+|+|.++.. +|.....+...+.... .++| +++++||+|+......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~p-iiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TYKNVPNWHRDLVRVC-GNIP-IVLCGNKVDIKDRKVK 122 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhC-CCCc-EEEEEEchhcccccCC
Confidence 467999999999998888888899999999999998743 2211122222222221 2678 8999999998521111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. +...+.+. ...+++++||++|+|++++.
T Consensus 123 ~--------~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 123 A--------KQITFHRK------KNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred H--------HHHHHHHH------cCCEEEEEeCCCCCChHHHH
Confidence 1 11112222 24689999999999998764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=102.38 Aligned_cols=111 Identities=22% Similarity=0.153 Sum_probs=72.0
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||+++|...+..+++++|++++|+|.++.. +|.....+...+.... ..+.| +++++||+|
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 117 (163)
T cd04136 42 IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFNDLQDLREQILRVKDTENVP-MVLVGNKCD 117 (163)
T ss_pred EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44444 56789999999999999999999999999999997742 2221122222222211 23577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... . .+....+.+.. +.+++++||++|.|++++.
T Consensus 118 l~~~~~~--~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 118 LEDERVV--S----REEGQALARQW------GCPFYETSAKSKINVDEVF 155 (163)
T ss_pred cccccee--c----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 7532110 0 11122222322 3689999999999998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=123.07 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=83.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH----------HHhhh--hcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN----------MIGGT--AQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~----------~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+|+|++.+...+.+++..+.+|||||+.++... ...++ ..+|++++|+|++... +...
T Consensus 33 ~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~ 103 (772)
T PRK09554 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLY 103 (772)
T ss_pred CCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHH
Confidence 4799999999999999999999999999876421 11222 3789999999997743 2333
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++.+.++| +++++||+|+........+.+. + .+.+ +.|++++||++|+|++++++
T Consensus 104 l~~ql~e~giP-vIvVlNK~Dl~~~~~i~id~~~----L---~~~L------G~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 104 LTLQLLELGIP-CIVALNMLDIAEKQNIRIDIDA----L---SARL------GCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred HHHHHHHcCCC-EEEEEEchhhhhccCcHHHHHH----H---HHHh------CCCEEEEEeecCCCHHHHHH
Confidence 44566677899 8999999997532221112222 2 2233 46899999999999887653
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=106.46 Aligned_cols=124 Identities=17% Similarity=0.064 Sum_probs=79.7
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.+..+.....+..++ ..+.+|||||++++...+..+++.++++|+|+|+++.. +|.....|...+......+
T Consensus 41 ~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~ 117 (216)
T PLN03110 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVQRWLRELRDHADSN 117 (216)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HHHHHHHHHHHHHHhCCCC
Confidence 334444555445555554 57999999999999999999999999999999997743 2221122322222222246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+| +++++||+|+....... . +....+.... .++++++||++|.|++++.
T Consensus 118 ~p-iiiv~nK~Dl~~~~~~~---~---~~~~~l~~~~------~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 118 IV-IMMAGNKSDLNHLRSVA---E---EDGQALAEKE------GLSFLETSALEATNVEKAF 166 (216)
T ss_pred Ce-EEEEEEChhcccccCCC---H---HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 77 89999999974321110 0 1112222222 4689999999999998753
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=101.40 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=77.4
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
++.+.....+.+.+ ..+.+|||||+.++...+..+++.+|++++|+|++++. +|.....+...+......+.| +
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~-~ 115 (169)
T cd04114 40 IGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREIEQYANNKVI-T 115 (169)
T ss_pred eeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-E
Confidence 33445555566665 56899999999999988899999999999999997643 111112233333333334677 7
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++++||+|+...... .....+.+ .+. ...+++++||++|.|++++-
T Consensus 116 i~v~NK~D~~~~~~i---~~~~~~~~---~~~------~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 116 ILVGNKIDLAERREV---SQQRAEEF---SDA------QDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred EEEEECccccccccc---CHHHHHHH---HHH------cCCeEEEeeCCCCCCHHHHH
Confidence 999999997532110 11111112 111 13689999999999998753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=104.72 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++||+|+.....
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~ 127 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQ 127 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccc
Confidence 356889999999999999999999999999999998743 222122222222221 123667 899999999753210
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. ...+ ...+.+.. +++++++||++|.|++++
T Consensus 128 i--~~~~----~~~~~~~~------~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 128 V--STGE----GQELAKSF------GIPFLETSAKQRVNVDEA 158 (189)
T ss_pred c--CHHH----HHHHHHHh------CCEEEEeeCCCCCCHHHH
Confidence 0 0111 12222222 368999999999999864
|
|
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=99.98 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+|||+|+++|.+.+...++.|=+.++++|.+. +.+|-...+|...++.-....-|.+|++.||.|+.. .
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~---eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~----~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS---EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED----Q 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc---hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh----h
Confidence 459999999999999999999999999999999988 445544455665554444445577999999999852 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
. .....+...+..+.| .|+|++||.+|.|+++
T Consensus 140 R--~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 140 R--VVSEDQAAALADKYG------LPYFETSACTGTNVEK 171 (219)
T ss_pred h--hhhHHHHHHHHHHhC------CCeeeeccccCcCHHH
Confidence 1 112233445556554 6999999999999875
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=117.23 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=85.3
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|..++|+.||+|+..+-..+..+++.+++||+|||-+|.....++.+-+|+++++||+.+|. -+++...++
T Consensus 46 fld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv-------~~qt~~vlr 118 (887)
T KOG0467|consen 46 FLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGV-------CSQTYAVLR 118 (887)
T ss_pred eccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecccc-------chhHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCCCcEEEEEeCCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl 102 (156)
++-..+.. .++|+||+|+
T Consensus 119 q~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 119 QAWIEGLK-PILVINKIDR 136 (887)
T ss_pred HHHHccCc-eEEEEehhhh
Confidence 88888888 6999999994
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=107.92 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=72.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.||||||+++|...+..+++++|++++|+|.++.. +|.. ...|...+... ..+.| +|+|+||+|+.....
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf~~~~~~w~~~i~~~-~~~~p-iilVgNK~DL~~~~~ 134 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSALKKWKAEIMDY-CPSTR-ILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEECcccccccc
Confidence 366999999999999999999999999999999998743 3321 12333333221 13567 899999999742100
Q ss_pred h------HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 S------EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
. ........++...+.+..++ .++++|||++|+ |++++-
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~-----~~~~EtSAktg~~~V~e~F 180 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGA-----EVYLECSAFTSEKSIHSIF 180 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCC-----CEEEEccCCcCCcCHHHHH
Confidence 0 00000011234455555532 268999999998 787653
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=104.12 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=77.7
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++.+...+..++++++++++|+|+++.. +|.....+...+.. .....|
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s~~~~~~~~~~i~~-~~~~~p 112 (199)
T cd04110 37 TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFVNVKRWLQEIEQ-NCDDVC 112 (199)
T ss_pred ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---HHHHHHHHHHHHHH-hCCCCC
Confidence 3444444444555544 46899999999999999999999999999999998743 22211222222211 112466
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+....... .++...+.+.. +++++++||++|.|++++.
T Consensus 113 -iivVgNK~Dl~~~~~~~------~~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 113 -KVLVGNKNDDPERKVVE------TEDAYKFAGQM------GISLFETSAKENINVEEMF 159 (199)
T ss_pred -EEEEEECcccccccccC------HHHHHHHHHHc------CCEEEEEECCCCcCHHHHH
Confidence 89999999985321100 11222333333 3689999999999998764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=113.83 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=85.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||+.. +...+..+++.+|++++|+|+..+. .....+...+
T Consensus 32 ~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~-------~~~~~~~~~~ 104 (435)
T PRK00093 32 TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL-------TPADEEIAKI 104 (435)
T ss_pred CCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHHH
Confidence 578999999999999999999999999987 3445677889999999999998865 2444556666
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++++||+|+... . . ...++ ...++ ..++++||++|.|++++.
T Consensus 105 l~~~~~p-iilv~NK~D~~~~---~---~----~~~~~-~~lg~-----~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 105 LRKSNKP-VILVVNKVDGPDE---E---A----DAYEF-YSLGL-----GEPYPISAEHGRGIGDLL 154 (435)
T ss_pred HHHcCCc-EEEEEECccCccc---h---h----hHHHH-HhcCC-----CCCEEEEeeCCCCHHHHH
Confidence 7777888 8999999996421 1 1 11111 22332 246999999999998753
|
|
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-16 Score=104.67 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...++.||||+|+++|...-..||++++++++|+|.++ +.+|.....|...++.+....+- +++|.||+|+-.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD---rdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEe--- 132 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD---RDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEE--- 132 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc---hHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHH---
Confidence 34679999999999999999999999999999999998 56777677787777777666666 899999999741
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .....++...+.+.. +..++.+||+...||.+|.
T Consensus 133 -e--R~Vt~qeAe~YAesv------GA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 133 -E--RQVTRQEAEAYAESV------GALYMETSAKDNVGISELF 167 (218)
T ss_pred -h--hhhhHHHHHHHHHhh------chhheecccccccCHHHHH
Confidence 1 122223344444444 3578999999999998763
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=98.43 Aligned_cols=121 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------H-HHHHhh-hhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-------V-PNMIGG-TAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~-~~~~~~-~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+.|.+.....+.+++..+.+|||||+.+. . .....+ ...+|++++|+|+++.. ++. .......+.
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~---~~~-~~~~~~~~~ 105 (168)
T cd01897 30 YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETC---GYS-LEEQLSLFE 105 (168)
T ss_pred CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCccc---ccc-hHHHHHHHH
Confidence 3466777777777778899999999998421 0 111112 23368999999997642 110 011122233
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+... +.| +++++||+|+... ....+ ...+.+. ..++++++||++|+|++++.+
T Consensus 106 ~l~~~~~~~p-vilv~NK~Dl~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 106 EIKPLFKNKP-VIVVLNKIDLLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred HHHhhcCcCC-eEEEEEccccCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHHH
Confidence 33333 677 8999999998532 11111 1111111 246899999999999988753
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=100.36 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+... ...+.| +++++||+|+......
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~ 123 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV 123 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE
Confidence 57889999999999999999999999999999997642 121112222222211 123567 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+....+.+.. +.+++++||++|.|++++.
T Consensus 124 ~------~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 124 S------TEEGKELARQW------GCPFLETSAKERVNVDEAF 154 (164)
T ss_pred c------HHHHHHHHHHc------CCEEEEeecCCCCCHHHHH
Confidence 1 11122222322 3689999999999998764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=119.24 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=86.9
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.......+++..+.+|||||+.. +...+..+++.+|++|+|+|++.+. ........
T Consensus 304 ~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~-------~~~d~~i~ 376 (712)
T PRK09518 304 EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL-------TSTDERIV 376 (712)
T ss_pred cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHH
Confidence 44689999999999999999999999999863 4556777889999999999998865 24444556
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+... . .. ...+. ..++ ...+++||++|.|+++|.
T Consensus 377 ~~Lr~~~~p-vIlV~NK~D~~~~---~---~~----~~~~~-~lg~-----~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 377 RMLRRAGKP-VVLAVNKIDDQAS---E---YD----AAEFW-KLGL-----GEPYPISAMHGRGVGDLL 428 (712)
T ss_pred HHHHhcCCC-EEEEEECcccccc---h---hh----HHHHH-HcCC-----CCeEEEECCCCCCchHHH
Confidence 667777888 8999999997521 0 00 11111 2233 135799999999998764
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=99.23 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++.+...+..+++.+|++++|+|.++.. +|.....+.+.+... ..+.| +++|+||+|+.....
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p-~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA---SFENCSRWVNKVRTA-SKHMP-GVLVGNKMDLADKAE 124 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH---HHHHHHHHHHHHHHh-CCCCC-EEEEEECcccccccC
Confidence 3478999999999999888899999999999999997742 111111222222111 13577 899999999853211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .. ...+.... +.+++++||++|.|++++.
T Consensus 125 ~~~--~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 125 VTD--AQ----AQAFAQAN------QLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred CCH--HH----HHHHHHHc------CCeEEEEeCCCCCChHHHH
Confidence 110 01 11111221 4689999999999998764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-15 Score=103.23 Aligned_cols=107 Identities=18% Similarity=0.062 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+...++++|++++|+|+++.. +|.....+...+......+.| +++++||+|+......
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v 123 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVV 123 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccC
Confidence 356899999999999989999999999999999998743 222222222222222223456 8999999997532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .. ....+.+.. +++++++||++|.|++++.
T Consensus 124 ~--~~----~~~~~~~~~------~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 124 D--SN----IAKSFCDSL------NIPFFETSAKQSINVEEAF 154 (188)
T ss_pred C--HH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 0 01 111222222 3589999999999998653
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=102.56 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=78.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|.......+.+++..+.+|||||+.++...+..+++++|++++|+|+++.. +|. .....+... ...+.|
T Consensus 50 T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~p- 122 (190)
T cd00879 50 TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RFQ---ESKEELDSLLSDEELANVP- 122 (190)
T ss_pred ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HHH---HHHHHHHHHHcCccccCCC-
Confidence 445556677788899999999999999888899999999999999997642 111 111121111 124577
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC----------CCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF----------NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... .+++++.+ ..... .....++++++||++|+|++++.
T Consensus 123 vivv~NK~Dl~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 123 FLILGNKIDLPGAVS----EEELRQAL----GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred EEEEEeCCCCCCCcC----HHHHHHHh----CcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 899999999853211 12222222 11110 00123579999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-15 Score=99.20 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=76.9
Q ss_pred CceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 15 GKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 15 g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..+.......+.. ....+.+||+||+..+...+..+++++|++++|+|+++.. ++.....+...+......+.|
T Consensus 32 t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p- 107 (159)
T cd00154 32 TIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SFENLDKWLKELKEYAPENIP- 107 (159)
T ss_pred ceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCc-
Confidence 3333344444444 4477999999999999999999999999999999997732 111111122211111112467
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+.... . ...+++..+.... ..+++++||++|.|++++.
T Consensus 108 ~ivv~nK~D~~~~~--~----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 108 IILVGNKIDLEDQR--Q----VSTEEAQQFAKEN------GLLFFETSAKTGENVEELF 154 (159)
T ss_pred EEEEEEcccccccc--c----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 89999999975111 1 1122233333332 4689999999999998764
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=119.48 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=87.7
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHH--HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVP--NMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~--~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
...|+|.+.....+.+++..+.+|||||+.+ +.. ....+++.+|++++|+|++++. ..+...
T Consensus 480 ~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~-------s~~~~~ 552 (712)
T PRK09518 480 DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI-------SEQDLK 552 (712)
T ss_pred CCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC-------CHHHHH
Confidence 3578999998888889999999999999743 111 1345678999999999999876 345555
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+..+...+.| +++|+||+|+... ...+.+++.+...+... ...+++++||++|.|+++|.+
T Consensus 553 i~~~~~~~~~p-iIiV~NK~DL~~~----~~~~~~~~~~~~~l~~~-----~~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 553 VMSMAVDAGRA-LVLVFNKWDLMDE----FRRQRLERLWKTEFDRV-----TWARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred HHHHHHHcCCC-EEEEEEchhcCCh----hHHHHHHHHHHHhccCC-----CCCCEEEEECCCCCCHHHHHH
Confidence 66666667888 8999999998632 11223333333222221 235789999999999987643
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-15 Score=103.38 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|......+++++|++|+|+|.++.. +|... ..|...+... ..+.| +++|+||+|+.....
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---Sf~~~~~~w~~~i~~~-~~~~~-iilVgnK~DL~~~~~ 122 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---TLDSVLKKWRGEIQEF-CPNTK-VLLVGCKTDLRTDLS 122 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---hHHHHHHHHHHHHHHH-CCCCC-EEEEEEChhhhcChh
Confidence 356899999999999888888999999999999998743 33321 2333333222 13567 899999999842100
Q ss_pred hHHHH------HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 108 SEARY------NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 108 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
....+ .-..++...+.+..++ .+++++||++|+| ++++
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDI 167 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHH
Confidence 00000 0011223344444432 3799999999995 8765
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=101.78 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=77.8
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|.......+..++.++.+|||||+.++...+..+++++|++++|+|+++.. ++ ......+..+ ...+.|
T Consensus 48 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~---~~~~~~l~~l~~~~~~~~~p- 120 (184)
T smart00178 48 TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RF---AESKRELDALLSDEELATVP- 120 (184)
T ss_pred ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HH---HHHHHHHHHHHcChhhcCCC-
Confidence 344445566678899999999999999999999999999999999997642 11 1111122211 124677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc---CCCCCCCCeEEEeecccCCCCccC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKL---GFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+.... ..+++.+.+.- .+.. +......+.++++||++|+|++++
T Consensus 121 iliv~NK~Dl~~~~----~~~~i~~~l~l-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 121 FLILGNKIDAPYAA----SEDELRYALGL-TNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred EEEEEeCccccCCC----CHHHHHHHcCC-CcccccccccCCceeEEEEeecccCCChHHH
Confidence 89999999975321 12233332210 0000 000012457999999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=101.08 Aligned_cols=112 Identities=10% Similarity=0.104 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++|+|+|.++.. +|+... .+...+.. ...+.| +++++||+|+......
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~-~~~~~p-iilv~nK~Dl~~~~~~ 120 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFENVKEKWYPEVKH-FCPNTP-IILVGTKLDLREDKST 120 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEecChhhhhChhh
Confidence 46999999999999888888899999999999997642 221111 12221111 123677 8999999998531110
Q ss_pred HHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+. ...++...+.+..+ ..+++++||++|.|++++.
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIG-----AVKYLECSALTQEGVREVF 164 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcC-----CcEEEEecCCCCCCHHHHH
Confidence 00000 00122333444443 2488999999999998764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=97.51 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=75.2
Q ss_pred cCceeeeeeEEEEeCCe-EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCC-ccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRK-HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKG-EFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~-~~~~~~~~~~~~~~~~~~ 84 (156)
.+.|.+.....+..++. .+.+|||||+.+ +...+...+..+|++++|+|+++. .. +.....+.+.+..
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~~~~~~~~~~l~~ 107 (170)
T cd01898 31 PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---VEDYKTIRNELEL 107 (170)
T ss_pred CccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---HHHHHHHHHHHHH
Confidence 45677777777777776 999999999742 233444556679999999999875 21 0001112222211
Q ss_pred HH--HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AK--TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~--~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ..+.| +++|+||+|+..... . .+.+..+.... ...+++++||++|.|++++.
T Consensus 108 ~~~~~~~~p-~ivv~NK~Dl~~~~~----~---~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 108 YNPELLEKP-RIVVLNKIDLLDEEE----L---FELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hCccccccc-cEEEEEchhcCCchh----h---HHHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 11 12567 799999999853211 1 11222223221 14588999999999998764
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=98.46 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+.++...+..+++.+|++++|+|..+.. +|.....+...+.... ..++| +++|+||+|+.....
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~ 122 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ 122 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccc
Confidence 357999999999999999999999999999999987632 1211122323222221 24678 899999999864110
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. ... ....+.+.. +.+++++||++|+|++++.+
T Consensus 123 ~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 123 V--SSE----EAANLARQW------GVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred c--CHH----HHHHHHHHh------CCeEEEeeCCCCCCHHHHHH
Confidence 0 011 122223333 35899999999999988653
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=98.53 Aligned_cols=118 Identities=22% Similarity=0.228 Sum_probs=80.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|.+.....+.+++..+.+||.+|+..+...|..++.++|++|||+|+++.. . ..+..+.+..+. ..+.|
T Consensus 45 T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~---~---l~e~~~~L~~ll~~~~~~~~p- 117 (175)
T PF00025_consen 45 TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE---R---LQEAKEELKELLNDPELKDIP- 117 (175)
T ss_dssp ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG---G---HHHHHHHHHHHHTSGGGTTSE-
T ss_pred ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccce---e---ecccccchhhhcchhhcccce-
Confidence 445556667789999999999999999999999999999999999998742 0 112222222222 13567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++++||.|+..+.. ..+ +...+....+.....+.++++||++|+|+.+
T Consensus 118 iLIl~NK~D~~~~~~----~~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 118 ILILANKQDLPDAMS----EEE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEEEESTTSTTSST----HHH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEEeccccccCcch----hhH----HHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 899999999864322 122 2222222222212467899999999999865
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=98.71 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=76.9
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+.+....++.+.....+.+++ ..+.+|||||++++.. .+..+++++|++++|+|+++.. +|.....+...+...
T Consensus 28 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~ 104 (170)
T cd04115 28 PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA---SFHSLPSWIEECEQH 104 (170)
T ss_pred CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHh
Confidence 334444555555555566555 6799999999998864 5777889999999999998743 222222233222221
Q ss_pred H-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc---CCCCccC
Q psy10355 86 K-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL---EKNPLLL 150 (156)
Q Consensus 86 ~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~---g~gi~~l 150 (156)
. ..++| +++++||+|+....... .+....+.+.. .++++++||++ +.|++++
T Consensus 105 ~~~~~~p-~iiv~nK~Dl~~~~~~~------~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 105 SLPNEVP-RILVGNKCDLREQIQVP------TDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred cCCCCCC-EEEEEECccchhhcCCC------HHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 1 23578 89999999975321111 01112222222 46899999999 5555543
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=101.11 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=73.2
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~N 98 (156)
...+.+.+ ..+.+|||||+.+|...+..+++.+|++++|+|+++.. +|.....+...+... ...++| +++++|
T Consensus 37 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~N 112 (198)
T cd04147 37 RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGN 112 (198)
T ss_pred eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEE
Confidence 34455555 67899999999999888888999999999999997743 111111222222211 124678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ........ .... .. .+.+++++||++|.|++++.
T Consensus 113 K~Dl~~~~~-~v~~~~~~----~~~~-~~----~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 113 KADSLEEER-QVPAKDAL----STVE-LD----WNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ccccccccc-cccHHHHH----HHHH-hh----cCCcEEEecCCCCCCHHHHH
Confidence 999853211 10011111 1111 11 13588999999999998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=103.67 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=79.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|.......+..++.++.++||||+.+. ...+..++..+|++++|+|++++. .......+..
T Consensus 36 ~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~-------~~~~~~i~~~ 108 (292)
T PRK00089 36 KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI-------GPGDEFILEK 108 (292)
T ss_pred CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------ChhHHHHHHH
Confidence 3455555555555556689999999998553 334556778999999999998754 2334455555
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...+.| +++|+||+|+... . ..+...+..+.+..+ ..+++++||++|.|++.|.
T Consensus 109 l~~~~~p-vilVlNKiDl~~~---~---~~l~~~~~~l~~~~~-----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 109 LKKVKTP-VILVLNKIDLVKD---K---EELLPLLEELSELMD-----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred HhhcCCC-EEEEEECCcCCCC---H---HHHHHHHHHHHhhCC-----CCeEEEecCCCCCCHHHHH
Confidence 5555678 8999999998621 1 112222222222222 3589999999999988763
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=102.50 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=76.4
Q ss_pred cCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cC
Q psy10355 14 KGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AG 89 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (156)
++++.+.....+... ...+.+|||||++++...+..+++++|++++|+|.++.. +|.....+...+..... .+
T Consensus 33 ~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~~l~~~~~~i~~~~~~~~ 109 (211)
T cd04111 33 PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFEHVHDWLEEARSHIQPHR 109 (211)
T ss_pred ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 344444444444442 357999999999999998999999999999999998742 22222222222221111 23
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++++||+|+...... ..++...+.+.. +++++++||++|+|++++.
T Consensus 110 ~~-iilvgNK~Dl~~~~~v------~~~~~~~~~~~~------~~~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 110 PV-FILVGHKCDLESQRQV------TREEAEKLAKDL------GMKYIETSARTGDNVEEAF 158 (211)
T ss_pred Ce-EEEEEEcccccccccc------CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHH
Confidence 44 7889999997531110 011122233333 3689999999999998764
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=102.95 Aligned_cols=110 Identities=11% Similarity=-0.029 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++. ....+++++|++++|+|.++.. +|+... .|...+... ..+.| +++|+||+|+.....
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~---Sf~~~~~~w~~~i~~~-~~~~p-iilvgNK~DL~~~~~ 137 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPN---SLRNVKTMWYPEIRHF-CPRVP-VILVGCKLDLRYADL 137 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChh---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEchhcccccc
Confidence 467999999999763 3456789999999999998743 232221 133322221 13567 899999999853100
Q ss_pred hHH-------------HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEA-------------RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... ...-..++...+.+.. ++++++|||++|+|++++-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~------~~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 138 DEVNRARRPLARPIKNADILPPETGRAVAKEL------GIPYYETSVVTQFGVKDVF 188 (195)
T ss_pred chhhhcccccccccccCCccCHHHHHHHHHHh------CCEEEEcCCCCCCCHHHHH
Confidence 000 0000112233444444 4589999999999998753
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=104.23 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=78.1
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAML 84 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~ 84 (156)
++.+..+.+..... ..+..++ ..+.||||||++.|...+..+++++|++|+|+|.++.. +|+.. ..|...+.
T Consensus 26 f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~~i~~~w~~~~~- 100 (222)
T cd04173 26 YPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLDSVLKKWQGETQ- 100 (222)
T ss_pred CCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHH-
Confidence 34444444433322 3444444 56899999999999999999999999999999998743 22211 11111111
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
....+.| +++|+||+|+........... -..++...+.++.+ ..+++++||++++| ++++
T Consensus 101 ~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~-----~~~y~E~SAk~~~~~V~~~ 167 (222)
T cd04173 101 EFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG-----AVSYVECSSRSSERSVRDV 167 (222)
T ss_pred hhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC-----CCEEEEcCCCcCCcCHHHH
Confidence 1124677 899999999853110000000 00122333334443 24899999999985 8764
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=105.69 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=74.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---------HcCCC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---------TAGVK 91 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 91 (156)
..+..++ +.+.||||||+++|......++..+|++|+|+|.++. .+|+....+.+.+.... ..+.|
T Consensus 39 k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~---~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 39 KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR---ESFEEVCRLREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 3444444 6789999999999988888888999999999999873 23332233333332221 13567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+++||+|+.... ....++ +..++... ..++++++||++|.|++++.
T Consensus 116 -iIivgNK~Dl~~~~--~v~~~e----i~~~~~~~-----~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 116 -MVICGNKADRDFPR--EVQRDE----VEQLVGGD-----ENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred -EEEEEECccchhcc--ccCHHH----HHHHHHhc-----CCCEEEEEeCCCCCCHHHHH
Confidence 89999999985311 111122 33332211 24689999999999998763
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=103.29 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=75.6
Q ss_pred CceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHH-HcCC
Q psy10355 15 GKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAK-TAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 90 (156)
.++.+.....+..++ ..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|..... +...+.... ..+.
T Consensus 45 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf~~~~~~~~~~~~~~~~~~~~ 121 (211)
T PLN03118 45 TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TFTNLSDVWGKEVELYSTNQDC 121 (211)
T ss_pred CceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCC
Confidence 333444444444443 57899999999999999999999999999999998743 1111111 111111111 1345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...... . .++...+.... .++++++||++|.|++++.
T Consensus 122 ~-~ilv~NK~Dl~~~~~i--~----~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 122 V-KMLVGNKVDRESERDV--S----REEGMALAKEH------GCLFLECSAKTRENVEQCF 169 (211)
T ss_pred C-EEEEEECccccccCcc--C----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 7 7999999998532111 0 11122222332 3589999999999998764
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=101.62 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=71.7
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+... ..+.| +++|+||+|
T Consensus 42 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~-~~~~p-iilv~nK~D 116 (193)
T cd04118 42 RMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SFERAKFWVKELQNL-EEHCK-IYLCGTKSD 116 (193)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHhc-CCCCC-EEEEEEccc
Confidence 344444 45779999999999888888899999999999997642 111111122222111 12577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+........... .+++..+.... +.+++++||++|.|++.|.
T Consensus 117 l~~~~~~~~~v~--~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 117 LIEQDRSLRQVD--FHDVQDFADEI------KAQHFETSSKTGQNVDELF 158 (193)
T ss_pred ccccccccCccC--HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 753211110010 11233333332 3688999999999998654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=106.67 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=77.8
Q ss_pred cCceeeeeeEEEEe-CCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFET-DRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|..+....+.+ ++..|++|||||..+ +.......+..++++++|+|+++.. .++....+...+...
T Consensus 189 pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~ 265 (335)
T PRK12299 189 PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKY 265 (335)
T ss_pred CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHh
Confidence 57899999998888 567899999999743 3345566677899999999997632 111111122222211
Q ss_pred HH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+..... .. .+....+++.. .++++++||++++|+++|.
T Consensus 266 ~~~L~~kp-~IIV~NKiDL~~~~~----~~--~~~~~~~~~~~------~~~i~~iSAktg~GI~eL~ 320 (335)
T PRK12299 266 SPELADKP-RILVLNKIDLLDEEE----ER--EKRAALELAAL------GGPVFLISAVTGEGLDELL 320 (335)
T ss_pred hhhcccCC-eEEEEECcccCCchh----HH--HHHHHHHHHhc------CCCEEEEEcCCCCCHHHHH
Confidence 11 3567 899999999863211 11 11122222222 3689999999999998764
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-15 Score=97.53 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=83.5
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|+...+.+..+..+..++.||||+|+++|...+..++++.+++++|+|.+.+. +|.....|.+.++.... .+| -+
T Consensus 42 GvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~Nv~rWLeei~~ncd-sv~-~v 116 (198)
T KOG0079|consen 42 GVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFNNVKRWLEEIRNNCD-SVP-KV 116 (198)
T ss_pred eeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhHhHHHHHHHHHhcCc-ccc-ce
Confidence 34444444445555678999999999999999999999999999999998853 45444566665543332 467 59
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+|.||.|.+.... -..+....+..+. ++.+|++||+..+|++..
T Consensus 117 LVGNK~d~~~Rrv------V~t~dAr~~A~~m------gie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 117 LVGNKNDDPERRV------VDTEDARAFALQM------GIELFETSAKENENVEAM 160 (198)
T ss_pred ecccCCCCcccee------eehHHHHHHHHhc------CchheehhhhhcccchHH
Confidence 9999999764211 1112233344443 468899999999998763
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=97.65 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=74.2
Q ss_pred eeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 19 EVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 19 ~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
+.....+.+.+ ..+.+|||||+..+...+..+++++|++|+++|+.+.. +|.....+...+.... ..++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p- 111 (172)
T cd01862 36 DFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK---SFESLDSWRDEFLIQASPSDPENFP- 111 (172)
T ss_pred EEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCccCCCCce-
Confidence 33333445544 45789999999999999999999999999999997643 1111111111111111 12577
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ...+ .+..+++..+ ..+++++||++|.|++.+.
T Consensus 112 ~ilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 112 FVVLGNKIDLEEKRQ--VSTK----KAQQWCQSNG-----NIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EEEEEECcccccccc--cCHH----HHHHHHHHcC-----CceEEEEECCCCCCHHHHH
Confidence 899999999862111 0111 2233334332 3689999999999998764
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=106.77 Aligned_cols=124 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred cCceeeeeeEEEEeCC-eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDR-KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|..+....+.+++ ..+.+|||||+.+ +.......+..++++++|+|++.......++....+.+.+...
T Consensus 188 ~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~ 267 (329)
T TIGR02729 188 PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKY 267 (329)
T ss_pred CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHh
Confidence 4678888888888877 8999999999842 2334455567799999999997631000000001112222111
Q ss_pred H--HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 K--TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~--~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.| +++|+||+|+... ...+++. ..+.+.. +.+++++||++++|+++|.
T Consensus 268 ~~~l~~kp-~IIV~NK~DL~~~----~~~~~~~---~~l~~~~------~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 268 SPELAEKP-RIVVLNKIDLLDE----EELAELL---KELKKAL------GKPVFPISALTGEGLDELL 321 (329)
T ss_pred hhhhccCC-EEEEEeCccCCCh----HHHHHHH---HHHHHHc------CCcEEEEEccCCcCHHHHH
Confidence 1 13567 7999999998632 1122222 2222222 3589999999999998864
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-14 Score=100.74 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..+++.+|++++|+|.++.. +|.... .|...+.. ...+.| +++|+||+|+......
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~~~~~~~~~~i~~-~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLENVESKWLGEIRE-HCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEEChhhccChhh
Confidence 57999999999999888888899999999999998743 221111 12222221 123677 8999999998532111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... ..++...+.+..+ .++++++||++|.|++++-
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHH
Confidence 100000 0111223333332 3689999999999998753
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=97.62 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
.+..+.+|||||+..+...+..+++.+|++++|+|+++.. +|+.. ..|...+... ..+.| +++|+||+|+....
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-viiv~nK~Dl~~~~ 119 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS---TLERIRTKWLPLIRRL-GVKVP-IILVGNKSDLRDGS 119 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEchhccccc
Confidence 5578999999999988888888889999999999997743 11110 0122222221 23567 89999999985422
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .+++.+..+.+... ...+++++||++|.|++++.
T Consensus 120 ~~~----~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 120 SQA----GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred chh----HHHHHHHHHHHHHh----cccEEEEeccccccCHHHHH
Confidence 110 11222222222221 01378999999999998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=114.35 Aligned_cols=111 Identities=29% Similarity=0.417 Sum_probs=83.7
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh--
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS-- 108 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~-- 108 (156)
.+.+||||||+.|.....++...||.+|+|+|...|+ .+++.+.+.+++..+.| ||+++||+|+. -.|.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl-------epqtiESi~lLR~rktp-FivALNKiDRL-Ygwk~~ 611 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL-------EPQTIESINLLRMRKTP-FIVALNKIDRL-YGWKSC 611 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccC-------CcchhHHHHHHHhcCCC-eEEeehhhhhh-cccccC
Confidence 5999999999999999999999999999999999998 69999999999999999 99999999963 1111
Q ss_pred -------------HHHHHHHHHHHHHH---HHHcCCCC---------CCCCeEEEeecccCCCCccC
Q psy10355 109 -------------EARYNECKDKILPY---LKKLGFNA---------AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 -------------~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~i~~Sa~~g~gi~~l 150 (156)
.....+.+..+..+ +.+.|++. ...+.++|+||.+|+||-.|
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdL 678 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDL 678 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHH
Confidence 11122222222222 23334321 12356899999999998765
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=99.08 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=72.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++|+|+|.++.. +|... ..+...+.. ...+.| +++++||+
T Consensus 40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~---sf~~~~~~~~~~~~~-~~~~~p-iilv~nK~ 114 (173)
T cd04130 40 VVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS---SFQNISEKWIPEIRK-HNPKAP-IILVGTQA 114 (173)
T ss_pred EEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEeeCh
Confidence 344444 57889999999999888888999999999999998743 11111 011111111 113577 89999999
Q ss_pred CCCCcchhHHH------HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEAR------YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+......... ..-..++...+.+..+ ..+++++||++|.|++++.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG-----ACEYIECSALTQKNLKEVF 166 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC-----CCeEEEEeCCCCCCHHHHH
Confidence 98532100000 0000112223333332 2489999999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-14 Score=96.28 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=74.8
Q ss_pred eeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 18 VEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 18 ~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.......+...+ ..+.+|||||++.+...+..+++.+|++++|+|+++.. ++.....+...+......++| +++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iii 110 (162)
T cd04123 35 ASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDAD---SFQKVKKWIKELKQMRGNNIS-LVI 110 (162)
T ss_pred eeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCe-EEE
Confidence 333333444434 46999999999999888888899999999999997743 111111222222222223567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++||+|+...... ..+ .+..+.+.. +.+++++||++|+|++++.
T Consensus 111 v~nK~D~~~~~~~--~~~----~~~~~~~~~------~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 111 VGNKIDLERQRVV--SKS----EAEEYAKSV------GAKHFETSAKTGKGIEELF 154 (162)
T ss_pred EEECcccccccCC--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 9999997632111 011 122223332 4578999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=99.61 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++++|++++|+|.++.. +|+... .+...+.. ...+.| +++++||.|+......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~~~~ 123 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLDNVEDKWFPEVNH-FCPGTP-IMLVGLKTDLRKDKNL 123 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEeChhhhhCccc
Confidence 56999999999999988888999999999999998743 221111 11111111 123577 8999999997532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..++...+....+. .+++++||++|.|++++-
T Consensus 124 ~~~v--~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 124 DRKV--TPAQAESVAKKQGA-----FAYLECSAKTMENVEEVF 159 (187)
T ss_pred cCCc--CHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHH
Confidence 0000 01123333343321 388999999999998753
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=102.71 Aligned_cols=135 Identities=21% Similarity=0.325 Sum_probs=111.6
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCC-----------------------eEEEEEeCCCCcChHHHHHhhh--hcCCEEE
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDR-----------------------KHFTILDAPGHKSFVPNMIGGT--AQADLAV 58 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~-----------------------~~~~iiDtpG~~~~~~~~~~~~--~~~d~~i 58 (156)
+.|..+.|-++|.|.+.+..-+-+++ +-+.|+||.||+.+...++..+ .+.|..+
T Consensus 152 ~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYgl 231 (527)
T COG5258 152 YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGL 231 (527)
T ss_pred hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEE
Confidence 35778899999999999988876533 5689999999999999999988 4679999
Q ss_pred EEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--------
Q psy10355 59 LVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-------- 130 (156)
Q Consensus 59 lvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 130 (156)
+++.+++|. ...+.+++-.+...++| +|++++|+|+. ..++++...+++...++..+--+
T Consensus 232 LvVaAddG~-------~~~tkEHLgi~~a~~lP-viVvvTK~D~~----~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d 299 (527)
T COG5258 232 LVVAADDGV-------TKMTKEHLGIALAMELP-VIVVVTKIDMV----PDDRFQGVVEEISALLKRVGRIPLIVKDTDD 299 (527)
T ss_pred EEEEccCCc-------chhhhHhhhhhhhhcCC-EEEEEEecccC----cHHHHHHHHHHHHHHHHHhcccceeeeccch
Confidence 999999998 47889999999999999 89999999987 45567777777877777655322
Q ss_pred -----------CCCCeEEEeecccCCCCccC
Q psy10355 131 -----------AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 131 -----------~~~~~~i~~Sa~~g~gi~~l 150 (156)
..-+|+|.+|+.+|+|++-|
T Consensus 300 ~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 300 VVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred hHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 11368999999999998754
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=97.94 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+++|...+..++++++++++|+|.++.. ++.....+...+.... ..+.| +++++||+|+......
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~ 124 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV 124 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc
Confidence 57899999999999999999999999999999997742 2221222323222222 34678 8999999997532110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .++...+.+..+ ..+++++||++|.|++++-
T Consensus 125 --~----~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 125 --S----REDGVSLSQQWG-----NVPFYETSARKRTNVDEVF 156 (168)
T ss_pred --C----HHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHH
Confidence 0 111222223322 2689999999999998753
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-14 Score=110.60 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+|+|.+.....+.+++..+.+|||||++++. ..+..+++.+|++++|+|++.+.. ......+
T Consensus 244 ~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l 316 (449)
T PRK05291 244 TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEIL 316 (449)
T ss_pred CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHH
Confidence 3467899999989999999999999999997643 234557889999999999987541 2222233
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.. ..+.| +++|+||+|+.... . .. .. ...+++++||++|+|++.|..
T Consensus 317 ~~--~~~~p-iiiV~NK~DL~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 317 EE--LKDKP-VIVVLNKADLTGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred Hh--cCCCC-cEEEEEhhhccccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 22 34677 89999999985311 0 00 00 245889999999999988643
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=99.00 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=73.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||+.++...+..+++.+|++++|+|..+.. +|.... .+...+... ..+.| +++++||+
T Consensus 40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~~~~~~~~~~l~~~-~~~~p-iivv~nK~ 114 (174)
T cd04135 40 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQNVKEEWVPELKEY-APNVP-YLLVGTQI 114 (174)
T ss_pred EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhh-CCCCC-EEEEeEch
Confidence 344444 45789999999999888888899999999999997743 111111 122222211 34677 89999999
Q ss_pred CCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+............ ..++...+.+..++ .+++++||++|.|++++.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 115 DLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVF 166 (174)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHH
Confidence 97532111100000 01122333344432 478999999999998764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=92.37 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 23 AYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 23 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
..+..++..+.+|||||+.++...+..+++.+|++++|+|+++... + ......+.... ..+.| +++++|
T Consensus 37 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~n 109 (159)
T cd04159 37 RKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGN 109 (159)
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEe
Confidence 4456677899999999999999999999999999999999976320 0 11111222211 24678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ...+.+.+ ..... ....++++++||++|.|++++.
T Consensus 110 K~D~~~~~~----~~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 110 KNDLPGALS----VDELIEQM----NLKSI-TDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CccccCCcC----HHHHHHHh----Ccccc-cCCceEEEEEEeccCCChHHHH
Confidence 999753211 11111111 00001 1124689999999999998764
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=96.02 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=92.9
Q ss_pred CccCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCc----------ChHHHHHhhh---hcCCEEEEEEeCCCCc
Q psy10355 1 MTGQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHK----------SFVPNMIGGT---AQADLAVLVISARKGE 67 (156)
Q Consensus 1 ~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~~~---~~~d~~ilvvD~~~~~ 67 (156)
|++++........+|.|....+..+... +.++|.||+- ........|+ .+..++++++|+..+.
T Consensus 44 l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~ 120 (200)
T COG0218 44 LTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120 (200)
T ss_pred HhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC
Confidence 3556666677888999998887776643 9999999972 2334444454 3467899999999887
Q ss_pred cccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCC
Q psy10355 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNP 147 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi 147 (156)
...+.+++.++...++| +++++||+|.......... +....+.+++.+.....++.+|+.++.|+
T Consensus 121 -------~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~-------l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 121 -------KDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQ-------LNKVAEELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred -------cHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHH-------HHHHHHHhcCCCCccceEEEEecccccCH
Confidence 36678899999999999 7999999998743222221 22222333333221112889999999999
Q ss_pred ccCCC
Q psy10355 148 LLLGI 152 (156)
Q Consensus 148 ~~l~~ 152 (156)
++|+.
T Consensus 186 ~~l~~ 190 (200)
T COG0218 186 DELKA 190 (200)
T ss_pred HHHHH
Confidence 88753
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=111.73 Aligned_cols=93 Identities=25% Similarity=0.275 Sum_probs=84.2
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ 77 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~ 77 (156)
+++|.+..|++||.++..+...+-.. ++-++++|||||-.|...+..+++.+|++++|+|+.+|.+ -+
T Consensus 165 rytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------ln 237 (971)
T KOG0468|consen 165 RYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LN 237 (971)
T ss_pred cccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------ee
Confidence 46788999999999999999888653 3669999999999999999999999999999999999984 67
Q ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 78 TREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 78 ~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
++..+.++...+.| +++|+||+|+.
T Consensus 238 tEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHHhccCc-EEEEEehhHHH
Confidence 88999999998999 99999999964
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-14 Score=112.59 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=88.0
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+|+|++.+.+.+...++.+.++|+||...+. +.+..++ ...|+++.|+|++.- .+......++
T Consensus 34 pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eRnLyltlQL 104 (653)
T COG0370 34 PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ERNLYLTLQL 104 (653)
T ss_pred CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HHHHHHHHHH
Confidence 6999999999999999999999999987652 2233343 357999999999763 3445555677
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+.|+| +++++|++|.+......-+.+++++.+ ++|++++||++|+|+++++.
T Consensus 105 lE~g~p-~ilaLNm~D~A~~~Gi~ID~~~L~~~L-------------GvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 105 LELGIP-MILALNMIDEAKKRGIRIDIEKLSKLL-------------GVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred HHcCCC-eEEEeccHhhHHhcCCcccHHHHHHHh-------------CCCEEEEEeecCCCHHHHHH
Confidence 788999 899999999764433333344444333 57999999999999888754
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-14 Score=101.38 Aligned_cols=117 Identities=23% Similarity=0.187 Sum_probs=74.4
Q ss_pred eeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 18 VEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 18 ~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|++... +|.....+...+......+.| +++
T Consensus 41 ~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s~~~l~~~~~~~~~~~~~~~p-iii 116 (210)
T PLN03108 41 VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IML 116 (210)
T ss_pred ceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---HHHHHHHHHHHHHHhcCCCCc-EEE
Confidence 333333444444 46889999999999988999999999999999997642 111111222222212223567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+...... ... +...+.+.. +++++++||++|.|++++
T Consensus 117 v~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 117 IGNKCDLAHRRAV--STE----EGEQFAKEH------GLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECccCccccCC--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 9999998532110 111 122333333 468999999999999874
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=98.19 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHhhcCceeeeeeEEEEeCCeEEEEEeCCCC-----------cChHHHHHhhh----hcCCEEEEEEeCCCCcc-cccc
Q psy10355 9 RQKREKGKTVEVGRAYFETDRKHFTILDAPGH-----------KSFVPNMIGGT----AQADLAVLVISARKGEF-ETGF 72 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~-----------~~~~~~~~~~~----~~~d~~ilvvD~~~~~~-~~~~ 72 (156)
..+..+|+|...... .+. .+.+|||||+ +++...+..++ ..++++++|+|+..... ...+
T Consensus 35 ~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~ 110 (201)
T PRK04213 35 RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERW 110 (201)
T ss_pred ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcccccccccc
Confidence 344566888775543 333 6999999994 34444444444 34679999999865310 0000
Q ss_pred C---CCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC-CCC--CCeEEEeecccCCC
Q psy10355 73 D---RGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN-AAK--DLSFMPCSGELEKN 146 (156)
Q Consensus 73 ~---~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~i~~Sa~~g~g 146 (156)
. ......+++..+...++| +++++||+|+.... ... ...+.+.++.. +.. ..+++++||++| |
T Consensus 111 ~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-g 179 (201)
T PRK04213 111 EGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR--DEV-------LDEIAERLGLYPPWRQWQDIIAPISAKKG-G 179 (201)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH--HHH-------HHHHHHHhcCCccccccCCcEEEEecccC-C
Confidence 0 011234445555567889 89999999985321 111 12222333321 001 236899999999 9
Q ss_pred CccCC
Q psy10355 147 PLLLG 151 (156)
Q Consensus 147 i~~l~ 151 (156)
++++.
T Consensus 180 i~~l~ 184 (201)
T PRK04213 180 IEELK 184 (201)
T ss_pred HHHHH
Confidence 98764
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-14 Score=95.41 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHhhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
..+.-.+.++.....++. ...++.+|||+|+++|...+.++++++-++++|+|.++.. .+.-...|..-.+.+-.
T Consensus 38 adcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs---tynhlsswl~dar~ltn 114 (215)
T KOG0097|consen 38 ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTN 114 (215)
T ss_pred hcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh---hhhhHHHHHhhhhccCC
Confidence 344444444444444444 4567999999999999999999999999999999998743 11111112221122222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+.. ++++.||.|+... ....+++ .+.+.++. +..|++.||++|+|++.
T Consensus 115 pnt~-i~lignkadle~q--rdv~yee----ak~faeen------gl~fle~saktg~nved 163 (215)
T KOG0097|consen 115 PNTV-IFLIGNKADLESQ--RDVTYEE----AKEFAEEN------GLMFLEASAKTGQNVED 163 (215)
T ss_pred CceE-EEEecchhhhhhc--ccCcHHH----HHHHHhhc------CeEEEEecccccCcHHH
Confidence 2334 6889999997421 1112333 34444544 45899999999999875
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-14 Score=96.95 Aligned_cols=107 Identities=19% Similarity=0.125 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||+.+ +...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+...
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 121 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHY 121 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHh
Confidence 34688999999985 3456777889999999999998743 2222222333333222 23677 8999999997421
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC-CCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE-KNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g-~gi~~l~ 151 (156)
.. .. .++...+.+.. +.+++++||++| .|++++.
T Consensus 122 ~~----v~--~~~~~~~~~~~------~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 122 RQ----VS--TEEGEKLASEL------GCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred Cc----cC--HHHHHHHHHHc------CCEEEEeCCCCCchhHHHHH
Confidence 10 00 11122223333 358999999999 4888764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=90.83 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=79.4
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv 95 (156)
|+........++++++++||..|+..+++-|..|+..+|++|+|+|+++.. +++.-. .....+..-+..|.| +++
T Consensus 47 t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r~~e~~~~L~~lL~eerlaG~~-~Lv 122 (185)
T KOG0073|consen 47 TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---RMQECKQELTELLVEERLAGAP-LLV 122 (185)
T ss_pred ccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---HHHHHHHHHHHHHhhhhhcCCc-eEE
Confidence 344555567788999999999999999999999999999999999997643 111001 111122222235778 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHH--HHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 96 LINKMDDPTVMWSEARYNECKD--KILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
++||.|+.++-. ..++.. .+..+. +...++++.+||.+|+++.
T Consensus 123 lank~dl~~~l~----~~~i~~~~~L~~l~------ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 123 LANKQDLPGALS----LEEISKALDLEELA------KSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEecCcCccccC----HHHHHHhhCHHHhc------cccCceEEEEeccccccHH
Confidence 999999874321 122221 122222 2247899999999998764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-14 Score=107.91 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=76.7
Q ss_pred hhcCceeeeeeEEEEe-CCeEEEEEeCCCCc-Ch-------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFET-DRKHFTILDAPGHK-SF-------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~-~~-------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-..|.|.+.....+.+ ++..+.+|||||+. +. ...+...+.++|++++|+|++++... .....+...+
T Consensus 218 ~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~---~~~~~~~~~L 294 (351)
T TIGR03156 218 DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE---EQIEAVEKVL 294 (351)
T ss_pred cCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH---HHHHHHHHHH
Confidence 3468889998888888 57899999999982 21 22344567899999999999875410 0000111223
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++|+||+|+... .. +..... + ..+++++||++|+|+++|..
T Consensus 295 ~~l~~~~~p-iIlV~NK~Dl~~~----~~-------v~~~~~--~-----~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 295 EELGAEDIP-QLLVYNKIDLLDE----PR-------IERLEE--G-----YPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HHhccCCCC-EEEEEEeecCCCh----Hh-------HHHHHh--C-----CCCEEEEEccCCCCHHHHHH
Confidence 332223577 8999999998531 11 111111 1 23689999999999988753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=106.60 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=78.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCcc-ccccCCCcchHHHHH-
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEF-ETGFDRGGQTREHAM- 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~-~~~~~~~~~~~~~~~- 83 (156)
.+++|+.+....+.+.+..|+++||||+.. +.......+..+|++|+|+|++.... ...+.........+.
T Consensus 189 ypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~ 268 (500)
T PRK12296 189 YPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAA 268 (500)
T ss_pred cCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHH
Confidence 468899999999999999999999999742 12234556678999999999974210 000000011111221
Q ss_pred HH----------HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LA----------KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~----------~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+. ...+.| .|+|+||+|+... .++.+.+...++.. .++++++||++++|+++|.
T Consensus 269 y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da-------~el~e~l~~~l~~~------g~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 269 YAPALDGDLGLGDLAERP-RLVVLNKIDVPDA-------RELAEFVRPELEAR------GWPVFEVSAASREGLRELS 332 (500)
T ss_pred hhhcccccchhhhhcCCC-EEEEEECccchhh-------HHHHHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 11 123567 7999999998531 11222222223322 4689999999999998764
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=90.54 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=85.3
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHHHHcCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLAKTAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 90 (156)
+-|++.....++-++..+.+||.||+++|..+|..+.+++++++++||+++.. . .....+.+ ....-.++
T Consensus 50 iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~---k---~~~sr~EL~~LL~k~~l~gi 123 (186)
T KOG0075|consen 50 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD---K---LEASRSELHDLLDKPSLTGI 123 (186)
T ss_pred cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc---c---chhhHHHHHHHhcchhhcCC
Confidence 44677778888889999999999999999999999999999999999998743 1 11222222 22223578
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC--CCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA--KDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~Sa~~g~gi~~l 150 (156)
| ++++.||.|+.++..... +....|+... ..+-.+.+|++...||+..
T Consensus 124 p-~LVLGnK~d~~~AL~~~~-----------li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 124 P-LLVLGNKIDLPGALSKIA-----------LIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred c-EEEecccccCcccccHHH-----------HHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 8 899999999876533222 2233444321 2456899999999998753
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=107.63 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=85.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
-+|+|+|.....+..+|+.+.++||+|.++- .......+.+||.+++|+|++.+. ...+...+.
T Consensus 248 I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~-------~~~d~~~~~- 319 (454)
T COG0486 248 IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL-------DKEDLALIE- 319 (454)
T ss_pred CCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------chhhHHHHH-
Confidence 4699999999999999999999999998753 456778889999999999998864 233444444
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
....+.| +++++||.|+....... . + .. ..+.+++.+||++|+|++.|++
T Consensus 320 ~~~~~~~-~i~v~NK~DL~~~~~~~----~----~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 320 LLPKKKP-IIVVLNKADLVSKIELE----S----E-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred hcccCCC-EEEEEechhcccccccc----h----h-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 3445667 79999999987432110 0 1 00 0244789999999999998764
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=91.87 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=77.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+..++..+.+|||||+.++.. .....+..+|++++|+|++... .......+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~-------~~~~~~~~~~ 104 (157)
T cd04164 32 IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL-------DEEDLEILEL 104 (157)
T ss_pred CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CHHHHHHHHh
Confidence 457888877778888888999999999876532 3445678999999999998643 1222222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.| +++++||+|+..... . ... . ...+++++||++|.|+++|.
T Consensus 105 --~~~~~-vi~v~nK~D~~~~~~----~---------~~~--~----~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 105 --PADKP-IIVVLNKSDLLPDSE----L---------LSL--L----AGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred --hcCCC-EEEEEEchhcCCccc----c---------ccc--c----CCCceEEEECCCCCCHHHHH
Confidence 35677 899999999763211 0 000 0 24689999999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=95.37 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred hcCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCcc---ccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETD-RKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEF---ETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~---~~~~~~~~~~~~~ 81 (156)
.++.|.+.....+.++ +..+.+|||||+.+ +.......++.+|++++|+|+.+... ...+.....+...
T Consensus 26 ~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 105 (176)
T cd01881 26 YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAE 105 (176)
T ss_pred CCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHH
Confidence 4577888887888888 89999999999743 22344566788999999999976410 0000000111111
Q ss_pred HHHHH-------HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 82 AMLAK-------TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 82 ~~~~~-------~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.... ..+.| +++++||+|+.... ...... ... .... ...+++++||++|.|++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~----~~~~~~--~~~-~~~~-----~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 106 LKLYDLETILGLLTAKP-VIYVLNKIDLDDAE----ELEEEL--VRE-LALE-----EGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred HHHhhhhhHHHHHhhCC-eEEEEEchhcCchh----HHHHHH--HHH-HhcC-----CCCCEEEEehhhhcCHHHHHH
Confidence 21111 13677 89999999986321 111110 111 1111 246799999999999987653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-14 Score=94.47 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.++.+|||+|+++|...+.++++++=++++|+|.+. ..+|+-...|......... ...+-+.+|..|+||... .
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditn---r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--R 132 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN---RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--R 132 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc---hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--c
Confidence 579999999999999999999999999999999987 3344434444443322222 112226779999998631 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... ++...+.+.+ ++.||+|||++|.|+++.
T Consensus 133 qVt~----EEaEklAa~h------gM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 133 QVTA----EEAEKLAASH------GMAFVETSAKNGCNVEEA 164 (213)
T ss_pred cccH----HHHHHHHHhc------CceEEEecccCCCcHHHH
Confidence 2122 2333344444 579999999999999863
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=95.37 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=82.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHH---cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKT---AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~ 92 (156)
|++.....+++.+..|++||..|+.+++..|..|+++.+++|||+|+++.. ++. ...+.+ ..+.. .+.|
T Consensus 48 TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~---Ri~---eak~eL~~~l~~~~l~~~~- 120 (181)
T KOG0070|consen 48 TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE---RIE---EAKEELHRMLAEPELRNAP- 120 (181)
T ss_pred ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH---HHH---HHHHHHHHHHcCcccCCce-
Confidence 455666677788999999999999999999999999999999999998743 111 111211 11221 3566
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++..||.|++++-.. .+ +...+....+.. ..|.+-.++|.+|+|+.+
T Consensus 121 llv~aNKqD~~~als~----~e----i~~~L~l~~l~~-~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 121 LLVFANKQDLPGALSA----AE----ITNKLGLHSLRS-RNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEechhhccccCCH----HH----HHhHhhhhccCC-CCcEEeeccccccccHHH
Confidence 8999999998765331 22 333333333333 468899999999999754
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=93.93 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=63.2
Q ss_pred EEeCCCCc----ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 34 ILDAPGHK----SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 34 iiDtpG~~----~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
+|||||+. ++...+..+++++|++++|+|++.+.. ......... ..+.| +++++||+|+....
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 79999973 344455666899999999999987541 111222211 23567 89999999985321
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... +..+++..++ ..|++++||++|+|+++|.
T Consensus 108 --~~~----~~~~~~~~~~----~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 --VAA----TRKLLLETGF----EEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred --HHH----HHHHHHHcCC----CCCEEEEECCCccCHHHHH
Confidence 112 3334444443 2599999999999998865
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=107.74 Aligned_cols=111 Identities=20% Similarity=0.156 Sum_probs=75.9
Q ss_pred CeEEEEEeCCCCcC-----hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKS-----FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-----~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~D 101 (156)
..+++|+||||... +.+.+..++..+|+++||+|+..+. ...+...+..+...+ .| +++++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~-------s~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK-------SISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 47899999999854 3445667899999999999998754 244556666666666 37 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.... ....+.+++.+...+...+. ....+||+||++|.|++.|..
T Consensus 301 l~dre--eddkE~Lle~V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 301 QQDRN--SDDADQVRALISGTLMKGCI---TPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred CCCcc--cchHHHHHHHHHHHHHhcCC---CCceEEEEeCCCCCCHHHHHH
Confidence 74211 11133344444433332222 134799999999999987653
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=94.89 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=68.3
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||+|+++. .+++.+|++++|+|.++. .+|.....+...+..... .++| +++++||+
T Consensus 39 ~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~---~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~ 109 (158)
T cd04103 39 EVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENE---ASFQTVYNLYHQLSSYRNISEIP-LILVGTQD 109 (158)
T ss_pred EEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHH
Confidence 345555 56999999999752 456789999999999883 344332333333322221 3467 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+........ . .++...+.+.. ..+++++|||++|.||+++-
T Consensus 110 Dl~~~~~~~v--~--~~~~~~~~~~~-----~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 110 AISESNPRVI--D--DARARQLCADM-----KRCSYYETCATYGLNVERVF 151 (158)
T ss_pred HhhhcCCccc--C--HHHHHHHHHHh-----CCCcEEEEecCCCCCHHHHH
Confidence 9732111111 1 11222333332 14689999999999998753
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=102.59 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred hhcCceeeeeeEEEEeCCe-EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+++|..+....+.+.+. .++|+||||+.+ +.......+..+|++++|+|++....... .........
T Consensus 188 ~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~---~e~~~~l~~ 264 (390)
T PRK12298 188 DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP---VENARIIIN 264 (390)
T ss_pred CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh---HHHHHHHHH
Confidence 4578999999999988764 599999999854 23345567888999999999862100000 112222222
Q ss_pred HHHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.. .+.| +++|+||+|+... . ++.+.+..+.+..++ ..+++++||++++|+++|.
T Consensus 265 eL~~~~~~L~~kP-~IlVlNKiDl~~~----~---el~~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl 325 (390)
T PRK12298 265 ELEKYSPKLAEKP-RWLVFNKIDLLDE----E---EAEERAKAIVEALGW----EGPVYLISAASGLGVKELC 325 (390)
T ss_pred HHHhhhhhhcCCC-EEEEEeCCccCCh----H---HHHHHHHHHHHHhCC----CCCEEEEECCCCcCHHHHH
Confidence 2222 2567 7999999998532 1 122223333333222 2378999999999998764
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=93.66 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=70.1
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+||++|.+.+...+..+++.+|++++|+|+++.. +|. .....+.... ..++| +++|+||+
T Consensus 46 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~---~~~~~~~~~~~~~~~p-~iiv~NK~ 118 (169)
T cd01892 46 TVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---SFS---YCAEVYKKYFMLGEIP-CLFVAAKA 118 (169)
T ss_pred EEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---HHH---HHHHHHHHhccCCCCe-EEEEEEcc
Confidence 344444 57899999999999888888899999999999997742 111 1111122221 13577 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+...... ...+...+.+..++ ..++++||++|.|++++.
T Consensus 119 Dl~~~~~~------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 119 DLDEQQQR------YEVQPDEFCRKLGL-----PPPLHFSSKLGDSSNELF 158 (169)
T ss_pred cccccccc------cccCHHHHHHHcCC-----CCCEEEEeccCccHHHHH
Confidence 97532100 00112223333332 145899999999998753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-13 Score=104.06 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=76.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||++++.. .+..+++.+|++++|+|++.+.. .... .+..
T Consensus 234 ~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~ 305 (442)
T TIGR00450 234 IKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIID 305 (442)
T ss_pred CCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHH
Confidence 478999999999999999999999999965432 24567889999999999987541 1122 3333
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+...+.| +++|+||+|+... .... +.+.. +.+++++||++ .|+++
T Consensus 306 ~~~~~~p-iIlV~NK~Dl~~~-----~~~~-------~~~~~------~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 306 LNKSKKP-FILVLNKIDLKIN-----SLEF-------FVSSK------VLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCCC-EEEEEECccCCCc-----chhh-------hhhhc------CCceEEEEEec-CCHHH
Confidence 4445777 8999999998532 1111 11111 35789999998 46654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=102.31 Aligned_cols=119 Identities=21% Similarity=0.156 Sum_probs=75.7
Q ss_pred hcCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETD-RKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|..+....+.+. +..|++|||||+.. +.......+..++++++|+|++....... ..........
T Consensus 188 ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp---~e~~~~i~~E 264 (424)
T PRK12297 188 YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDP---IEDYEKINKE 264 (424)
T ss_pred CCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCCh---HHHHHHHHHH
Confidence 3578888888888877 78999999999743 22334455667999999999965310000 0112222222
Q ss_pred HHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. .+.| +++|+||+|+... ... +..+.+.+ ..+++++||++|+|+++|.
T Consensus 265 L~~y~~~L~~kP-~IVV~NK~DL~~~---~e~-------l~~l~~~l------~~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 265 LKLYNPRLLERP-QIVVANKMDLPEA---EEN-------LEEFKEKL------GPKVFPISALTGQGLDELL 319 (424)
T ss_pred HhhhchhccCCc-EEEEEeCCCCcCC---HHH-------HHHHHHHh------CCcEEEEeCCCCCCHHHHH
Confidence 222 3567 7999999997421 111 22222222 2478999999999998874
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-14 Score=94.73 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=86.6
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEE
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i 94 (156)
.|+......+...+..+.+||..|++...+.|..+|..|+++|+++|+++.. +|... .........-...|+| ++
T Consensus 55 ~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L 130 (197)
T KOG0076|consen 55 PTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VL 130 (197)
T ss_pred cccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hh
Confidence 4566667777777889999999999999999999999999999999998732 22111 2222333444456899 79
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+.+||-|+... ....+ +...+......+..+.++.|+||++|+||.+
T Consensus 131 ~lankqd~q~~----~~~~E----l~~~~~~~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 131 VLANKQDLQNA----MEAAE----LDGVFGLAELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hhcchhhhhhh----hhHHH----HHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence 99999998632 12233 3333332223334578999999999999875
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=87.76 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=80.3
Q ss_pred hhcCceeeeeeEEEEeC-CeEEEEEeCCCCcChH-------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETD-RKHFTILDAPGHKSFV-------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~~-------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
...+.|.......+... ...+.+|||||+..+. ..+..+++.+|++++|+|+..... ........
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~ 98 (163)
T cd00880 26 PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLE 98 (163)
T ss_pred CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHH
Confidence 34566666666666655 7789999999987653 345567889999999999987651 22222245
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+.| +++++||+|+..... .....+. ...... .....+++++||+++.|++.+.
T Consensus 99 ~~~~~~~~-~ivv~nK~D~~~~~~----~~~~~~~-~~~~~~----~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 99 LLRERGKP-VLLVLNKIDLLPEEE----EEELLEL-RLLILL----LLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred HHHhcCCe-EEEEEEccccCChhh----HHHHHHH-HHhhcc----cccCCceEEEeeeccCCHHHHH
Confidence 55556788 899999999864221 1111100 000011 1135789999999999998764
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=93.02 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHHHHcCCCcEEEE
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLAKTAGVKHLVVL 96 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ivv 96 (156)
....+...+..+.+|||||+..+...+..+++.+|++++|+|+.... ++ ......+ ......++| ++++
T Consensus 49 ~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~ivv 121 (173)
T cd04155 49 NIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RL---EEAGAELVELLEEEKLAGVP-VLVF 121 (173)
T ss_pred ceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhChhhcCCC-EEEE
Confidence 33456677899999999999998888888999999999999997632 11 1111111 112234678 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC--CCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNA--AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+.... ..+++. +..++.. ...++++++||++|+|++++.
T Consensus 122 ~nK~D~~~~~----~~~~i~-------~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 122 ANKQDLATAA----PAEEIA-------EALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EECCCCccCC----CHHHHH-------HHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 9999975321 112222 2222211 123468999999999998753
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=94.39 Aligned_cols=118 Identities=13% Similarity=0.155 Sum_probs=70.7
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. +|... ..+...+.. ...+.| +++++||+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~~~~~~~~~~~~~-~~~~~p-iilv~nK~ 115 (175)
T cd01870 41 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVKH-FCPNVP-IILVGNKK 115 (175)
T ss_pred EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEeeCh
Confidence 344444 46899999999998887778889999999999997632 11100 011111111 113678 89999999
Q ss_pred CCCCcchhHHHHHHH------HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNEC------KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+............. ......+.+..+ ..+++++||++|.|++++.
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVF 167 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHH
Confidence 975322111100000 011222223222 3589999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=88.80 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAML 84 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~ 84 (156)
.+.+..++++.+.....+..++ ..+.+|||||+.++...+....+.+++++.++|...... .+.... .+...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 26 FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIH 103 (161)
T ss_pred CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHH
Confidence 4556667888888877777777 789999999999998888888888888888888755421 111011 22222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+.| +++++||+|+.... ..+.....+...+ ..+++++||++|.|++.+.
T Consensus 104 ~~~~~~p-~ivv~nK~D~~~~~--------~~~~~~~~~~~~~-----~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 104 HAESNVP-IILVGNKIDLRDAK--------LKTHVAFLFAKLN-----GEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred hcccCCc-EEEEEEcccCCcch--------hhHHHHHHHhhcc-----CCceEEeecCCCCCHHHHH
Confidence 2223678 89999999986321 1222333333332 3579999999999998754
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=91.94 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=74.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc----------ChHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK----------SFVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|........ +.++.+|||||+. ++......+++. ++++++|+|++.+. .....
T Consensus 56 ~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~~ 125 (196)
T PRK00454 56 TPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL-------KELDL 125 (196)
T ss_pred CCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC-------CHHHH
Confidence 4566666554432 4789999999963 233334444444 46788899987654 12233
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+....+...+.| +++++||+|+... ...+...+.+...+... ..+++++||++|+|++++.
T Consensus 126 ~i~~~l~~~~~~-~iiv~nK~Dl~~~----~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 126 QMIEWLKEYGIP-VLIVLTKADKLKK----GERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred HHHHHHHHcCCc-EEEEEECcccCCH----HHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 344555667888 8999999997532 12233333344444322 3588999999999988764
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=90.86 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=60.6
Q ss_pred EEEeCCCCc----ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 33 TILDAPGHK----SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 33 ~iiDtpG~~----~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.+|||||+. .+.......++++|++++|+|++++.. + ....... ..+.| +++++||+|+.....
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~----~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~- 105 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES---R----FPPGFAS---IFVKP-VIGLVTKIDLAEADV- 105 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc---C----CChhHHH---hccCC-eEEEEEeeccCCccc-
Confidence 689999983 233334446899999999999987651 1 1111111 12346 899999999853211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+ ....+++..+ ..+++++||++|+|++++.
T Consensus 106 --~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 106 --DIE----RAKELLETAG-----AEPIFEISSVDEQGLEALV 137 (142)
T ss_pred --CHH----HHHHHHHHcC-----CCcEEEEecCCCCCHHHHH
Confidence 111 2233333333 2378999999999998764
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=105.34 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=76.8
Q ss_pred hhcCceeeeeeEEEEeCCe-EEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-..|.|.+.....+.+.+. .+.+|||||+.+. ...+...++.+|++++|+|+++.... .....+...+
T Consensus 226 ~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~---e~l~~v~~iL 302 (426)
T PRK11058 226 DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQ---ENIEAVNTVL 302 (426)
T ss_pred cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHH---HHHHHHHHHH
Confidence 3568899998888888664 8999999998442 22345567899999999999875310 0000112233
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCe-EEEeecccCCCCccCCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLS-FMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~Sa~~g~gi~~l~~ 152 (156)
..+...+.| +++|+||+|+... ... . +.. ... +.+ ++++||++|+|++.|.+
T Consensus 303 ~el~~~~~p-vIiV~NKiDL~~~--~~~---~----~~~--~~~------~~~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 303 EEIDAHEIP-TLLVMNKIDMLDD--FEP---R----IDR--DEE------NKPIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred HHhccCCCC-EEEEEEcccCCCc--hhH---H----HHH--Hhc------CCCceEEEeCCCCCCHHHHHH
Confidence 333334677 8999999998531 110 0 100 011 223 58899999999988753
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-13 Score=90.79 Aligned_cols=117 Identities=22% Similarity=0.147 Sum_probs=74.8
Q ss_pred eeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEE
Q psy10355 19 EVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVV 95 (156)
Q Consensus 19 ~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv 95 (156)
+.....+..+ ...+.+||+||+.++.......++.+|++++|+|.++... +.....+...+..... .+.| +++
T Consensus 34 ~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~iv 109 (160)
T cd00876 34 DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---FEEIKGYREQILRVKDDEDIP-IVL 109 (160)
T ss_pred HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCc-EEE
Confidence 3334445555 4678999999999998888999999999999999976431 1111111222221111 3567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++||+|+..... . ..+.+..+.+.. ..+++++||++|.|++++.
T Consensus 110 v~nK~D~~~~~~--~----~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 110 VGNKCDLENERQ--V----SKEEGKALAKEW------GCPFIETSAKDNINIDEVF 153 (160)
T ss_pred EEECCcccccce--e----cHHHHHHHHHHc------CCcEEEeccCCCCCHHHHH
Confidence 999999764111 0 112233333333 2589999999999998764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=95.49 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=71.6
Q ss_pred cCceeeeeeEEEEeCCe-EEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRK-HFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+.|.+.....+.+.+. .+.+|||||+.+. .......+..+|++++|+|+++.... .....+...+..
T Consensus 72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~---~~~~~~~~~l~~ 148 (204)
T cd01878 72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE---EQIETVEKVLKE 148 (204)
T ss_pred cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh---hHHHHHHHHHHH
Confidence 35566666666766665 8999999998431 11123346789999999999875410 000111222222
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+.| +++|+||+|+.... ... ..... ...+++++||++|.|++++.
T Consensus 149 ~~~~~~~-viiV~NK~Dl~~~~----~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 149 LGAEDIP-MILVLNKIDLLDDE----ELE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred cCcCCCC-EEEEEEccccCChH----HHH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 2223567 89999999986321 111 11111 24689999999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=92.98 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.+..+.....+..++ ..+.+||+||++++.......++++|++|+|+|.++ +.+|.....|...+......
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~ 103 (162)
T PF00071_consen 27 NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPE 103 (162)
T ss_dssp SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccc
Confidence 3334444555555666555 559999999999998888889999999999999977 34444444444444433332
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++++||.|+.... .... ++...+++.. +.+++++||+++.|+.++
T Consensus 104 ~~~-iivvg~K~D~~~~~--~v~~----~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 104 DIP-IIVVGNKSDLSDER--EVSV----EEAQEFAKEL------GVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp TSE-EEEEEETTTGGGGS--SSCH----HHHHHHHHHT------TSEEEEEBTTTTTTHHHH
T ss_pred ccc-ceeeeccccccccc--cchh----hHHHHHHHHh------CCEEEEEECCCCCCHHHH
Confidence 456 89999999975311 1111 2234444544 369999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-13 Score=93.10 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~ 106 (156)
...+.+|||||++++.......++.+|++++|+|+++.. +|. ......+..+.. .+.| +++|+||+|+....
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 120 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS---SFE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDE 120 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH---HHH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhch
Confidence 457999999999988777777889999999999997632 110 001111222222 2577 89999999986432
Q ss_pred hhHHH-----HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEAR-----YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .....+....+....+ ..+++++||++|+|++++.
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIG-----AIGYMECSALTQEGVKEVF 165 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhC-----CeEEEEeecCCCCCHHHHH
Confidence 11000 0000222333334432 2389999999999998764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-13 Score=96.41 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=66.0
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCC
Q psy10355 25 FETDRKHFTILDAPGHKSFVPNMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDD 102 (156)
Q Consensus 25 ~~~~~~~~~iiDtpG~~~~~~~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl 102 (156)
+......+.+|||||++.+. ...+++ ++|++++|+|+++.. +|....++...+.... ..++| +|+|+||+|+
T Consensus 45 ~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~ad~iilV~d~td~~---S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 45 VDGEESTLVVIDHWEQEMWT--EDSCMQYQGDAFVVVYSVTDRS---SFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred ECCEEEEEEEEeCCCcchHH--HhHHhhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 33345779999999998332 234455 899999999998743 2221222222222111 13577 8999999997
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....... .++ ...+.... +++++++||++|.|++++.
T Consensus 119 ~~~~~v~--~~~----~~~~a~~~------~~~~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 119 ARSREVS--VQE----GRACAVVF------DCKFIETSAGLQHNVDELL 155 (221)
T ss_pred cccceec--HHH----HHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 5321110 111 11222222 4689999999999998764
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-12 Score=85.13 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=75.4
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+.......+...+..+.+|||||+.... ......+..+|++++|+|++... ..........+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~-------~~~~~~~~~~~~~ 109 (168)
T cd04163 37 TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI-------GEGDEFILELLKK 109 (168)
T ss_pred ceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc-------CchHHHHHHHHHH
Confidence 34444444455567889999999986432 23455678899999999998763 1333444455555
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+... .....+ ....+.... ...+++++|++++.|++++.
T Consensus 110 ~~~~-~iiv~nK~Dl~~~---~~~~~~---~~~~~~~~~-----~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 110 SKTP-VILVLNKIDLVKD---KEDLLP---LLEKLKELG-----PFAEIFPISALKGENVDELL 161 (168)
T ss_pred hCCC-EEEEEEchhcccc---HHHHHH---HHHHHHhcc-----CCCceEEEEeccCCChHHHH
Confidence 5678 8999999997521 111222 222222222 13588999999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=100.36 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=81.5
Q ss_pred ccCccccHHHhhcCceeeeeeEEEEe----------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 2 TGQGLWLRQKREKGKTVEVGRAYFET----------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 2 ~~~~~~~~~e~~~g~t~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
++.+|.-+.|+|||+|+.++-..+.+ ++..+++||.|||-+|.+....+++..|+++.|+|+-+
T Consensus 54 ~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 54 TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred ccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 45678889999999999988776532 34779999999999999999999999999999999999
Q ss_pred CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 66 GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
|. --|++..++++....+.+ +++.||+|++
T Consensus 134 Gv-------CVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 134 GV-------CVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred ce-------EechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 87 368899998888888875 8899999964
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-12 Score=88.24 Aligned_cols=106 Identities=16% Similarity=0.065 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||+.++...+..++..++++++|+|.++.. +++....+ ...+......+.| +++++||+|+......
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~ 124 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---SFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQV 124 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCcc
Confidence 56899999999999988889999999999999998743 11101111 1111111123567 8999999997531100
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... ....+.+.. ..+++++||++|+|++++.
T Consensus 125 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 125 --STE----EGKELAESW------GAAFLESSARENENVEEAF 155 (180)
T ss_pred --CHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 011 122222322 3589999999999998753
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=80.69 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (156)
|++.....+.+.+..|++||..|+.+.++.|..|+.+..++|||+|+.+.. . .....+.+..+ .....+
T Consensus 48 TvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d---r---~eeAr~ELh~ii~~~em~~~~- 120 (180)
T KOG0071|consen 48 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---R---IEEARNELHRIINDREMRDAI- 120 (180)
T ss_pred ccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchh---h---HHHHHHHHHHHhCCHhhhcce-
Confidence 445555566778999999999999999999999999999999999997632 0 01111121111 113466
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
+++..||-|++.+-.. ++ +..+++.-... ...|.+.|+||.+|.|+.
T Consensus 121 ~LvlANkQDlp~A~~p----qe----i~d~leLe~~r-~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 121 ILILANKQDLPDAMKP----QE----IQDKLELERIR-DRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEecCcccccccCH----HH----HHHHhcccccc-CCccEeeccccccchhHH
Confidence 8899999998754322 23 33333222221 136789999999999864
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=93.83 Aligned_cols=108 Identities=27% Similarity=0.425 Sum_probs=86.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
+.+.|+|+|||.-+...+.....-.|++++++.+++.-- ++|+.+++....-....|++++.||+|+.. +
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCP------QPQTsEHLaaveiM~LkhiiilQNKiDli~----e 194 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCP------QPQTSEHLAAVEIMKLKHIIILQNKIDLIK----E 194 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCC------CCchhhHHHHHHHhhhceEEEEechhhhhh----H
Confidence 568999999999999999999999999999998875431 689999988887788888999999999873 3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....+-.+++..+++.... ++.|++|+||--+.||+.+
T Consensus 195 ~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~v 232 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDVV 232 (466)
T ss_pred HHHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHHH
Confidence 3334444556666665544 4679999999999998864
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=80.99 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-----HHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-----HAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+..+.+||+||+..+...+...++.+|++++|+|++.+.. ..... ........+.| +++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES-------FENVKEWLLLILINKEGENIP-IILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccc
Confidence 6789999999999988888889999999999999987541 11111 11223335677 89999999976
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........ . ........ ...+++++|+.++.|++++.
T Consensus 116 ~~~~~~~~--~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 116 EERVVSEE--E----LAEQLAKE-----LGVPYFETSAKTGENVEELF 152 (157)
T ss_pred cccchHHH--H----HHHHHHhh-----cCCcEEEEecCCCCChHHHH
Confidence 43221110 0 01111111 25789999999999988653
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=84.73 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcC-CEEEEEEeCCCCccccccCCCcchHHHH----HHHH--HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFDRGGQTREHA----MLAK--TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~-d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~ivv~NK~ 100 (156)
.+..+.+||||||.++...+..+++.+ +++|+|+|+.... ..+ ....+.+ .... ..++| +++++||+
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~ 119 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KNL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQ 119 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hHH---HHHHHHHHHHHHHHhhccCCCC-EEEEecch
Confidence 367899999999999999999999998 9999999998742 000 1111111 1111 13677 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHH
Q psy10355 101 DDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~ 120 (156)
|+..+.......+.+.+++.
T Consensus 120 Dl~~a~~~~~i~~~le~ei~ 139 (203)
T cd04105 120 DLFTAKPAKKIKEQLEKELN 139 (203)
T ss_pred hhcccCCHHHHHHHHHHHHH
Confidence 98765444333444444444
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=83.57 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=69.2
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHH----HHH-H
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAM----LAK-T 87 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~----~~~-~ 87 (156)
++++.....+..++....++|.|||.+.+.....++. .+-+++||||+.... +. .....+.+. ... .
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--k~---vrdvaefLydil~~~~~~ 142 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--KN---VRDVAEFLYDILLDSRVK 142 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--hh---hHHHHHHHHHHHHhhccc
Confidence 4566777778888888999999999999988888887 789999999996532 00 011112221 111 1
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 122 (156)
.+.|++++++||-|+..+...+.-.+.+++++..+
T Consensus 143 ~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 143 KNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred cCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 34455999999999987765554455555665543
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=81.53 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=75.6
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHHHcCCCcEEEEEe
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~N 98 (156)
....++.+.+-++.+||..|+-.....|.-|+.+.|++|+|||+++.. ....... ...++..-...+.. +++++|
T Consensus 52 fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d---ris~a~~el~~mL~E~eLq~a~-llv~an 127 (182)
T KOG0072|consen 52 FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD---RISIAGVELYSMLQEEELQHAK-LLVFAN 127 (182)
T ss_pred cCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchh---hhhhhHHHHHHHhccHhhcCce-EEEEec
Confidence 344455667889999999999999999999999999999999997642 1110011 11112222223445 889999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|...+....+....+. + ..++. ..+.+|.+||.+|+|+++.
T Consensus 128 KqD~~~~~t~~E~~~~L~--l-~~Lk~------r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 128 KQDYSGALTRSEVLKMLG--L-QKLKD------RIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred cccchhhhhHHHHHHHhC--h-HHHhh------heeEEEeeccccccCCcHH
Confidence 999865432222111111 0 11111 2478999999999999874
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=87.39 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++++...+..++++++++++|+|.++.. +|.....+...+... ..++| +++++||+|+.....
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~-~~~~~-i~lv~nK~Dl~~~~~ 130 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRI---TYKNVPNWHRDIVRV-CENIP-IVLVGNKVDVKDRQV 130 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHh-CCCCC-EEEEEECccCccccC
Confidence 4478999999999999888888899999999999998743 121112222222211 23567 889999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. . ...+.+.. ++.++++||++|.|++++
T Consensus 131 ~~---~-----~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 131 KA---R-----QITFHRKK------NLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CH---H-----HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 11 1 11222222 468899999999998763
|
|
| >KOG0052|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=98.95 Aligned_cols=124 Identities=51% Similarity=0.793 Sum_probs=105.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++..|+++|++++...+.+....+.++++|.|||.+|.+.+.....++|++++++.+..+.++++.....+..++...
T Consensus 57 ~dk~~ae~~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehall 136 (391)
T KOG0052|consen 57 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 136 (391)
T ss_pred echhhhccccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhh
Confidence 58889999999999999999999999999999999999999999999999999999999777789999999999999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
....+..++++.+||+|-....+...++.++.+......+..+.
T Consensus 137 a~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~g~ 180 (391)
T KOG0052|consen 137 AFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGY 180 (391)
T ss_pred hccccceeeeEEeecccccCCCccccchhhhheeeeeeeecccc
Confidence 88888777899999999765555555666665555444444443
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=87.35 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=43.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.|.+...+.+.+++..+.+|||||+.+. .......++++|++++|+|+++.
T Consensus 31 ~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 31 EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 467778888888899999999999998532 33566788999999999998653
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=92.62 Aligned_cols=111 Identities=26% Similarity=0.325 Sum_probs=89.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
++-++|+|.+||.+|.+.++.++.+ .+++.+|+.+..|. ...+++++..+...++| ++++++|+|+..
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi-------~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~-- 317 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI-------TWTTREHLGLIAALNIP-FFVLVTKMDLVD-- 317 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC-------ccccHHHHHHHHHhCCC-eEEEEEeecccc--
Confidence 3679999999999999998888865 58999999999998 46789999999999999 899999999974
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCC--------------------CCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNA--------------------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..++...+++...+...|+.. .+-.|+|.+|..+|+|++.|+
T Consensus 318 --~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 318 --RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred --chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 3344555566666666666642 234689999999999987654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=87.13 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++.......++.+|++++++|.+... +|.... .|...+.. ....+| +++++||+|+......
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~~~~~~~~~~i~~-~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLENVRTKWIEEVRR-YCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEeeChhhhhCccc
Confidence 45899999999887666556778999999999997632 222111 12222221 123577 8999999997431110
Q ss_pred H-----HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 E-----ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+... .+....+.+..+ ..+++++||++|.|++++.
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f 165 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIG-----AKKYMECSALTGEGVDDVF 165 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhC-----CcEEEEccCCCCCCHHHHH
Confidence 0 00000 011222333333 2479999999999998764
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=83.15 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=67.2
Q ss_pred EEEeCCCC----cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 33 TILDAPGH----KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 33 ~iiDtpG~----~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.+|||||- ..|..........||.+++|.|+++... .|. + ..+...+.| +|-|+||+|+...
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~--~~p--P------~fa~~f~~p-vIGVITK~Dl~~~--- 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS--VFP--P------GFASMFNKP-VIGVITKIDLPSD--- 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc--cCC--c------hhhcccCCC-EEEEEECccCccc---
Confidence 45999994 4567777888889999999999987531 010 1 222334567 8999999998631
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..+.+. ...+++..|+. .+|++|+.+|+|+++|+.
T Consensus 105 ~~~i~~----a~~~L~~aG~~-----~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 105 DANIER----AKKWLKNAGVK-----EIFEVSAVTGEGIEELKD 139 (143)
T ss_pred hhhHHH----HHHHHHHcCCC-----CeEEEECCCCcCHHHHHH
Confidence 222333 34455666663 569999999999998864
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=86.52 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...+.|+||+|++.|..+...+++.+++.++|++.++ ..+|+......+.+..... ..+| +++|+||+|+...-
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd---~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD---RSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERER 124 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC---HHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhcc
Confidence 34568899999999999999999999999999999988 4455545555555433332 3467 89999999986311
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. ..++...+...+ .++++++||+...+++++
T Consensus 125 --~V----~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 125 --QV----SEEEGKALARSW------GCAFIETSAKLNYNVDEV 156 (196)
T ss_pred --cc----CHHHHHHHHHhc------CCcEEEeeccCCcCHHHH
Confidence 11 112222223333 467999999999888764
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=83.76 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-------------------HcC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-------------------TAG 89 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 89 (156)
...+.+|||+|+++|...+..+++++|++|+|+|.++. .+|+....|...+.... ..+
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~---~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQ 129 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh---HHHHHHHHHHHHHHHhhccccccccccccccccccCCCC
Confidence 35799999999999999999999999999999999884 34433344544443221 125
Q ss_pred CCcEEEEEeCCCCC
Q psy10355 90 VKHLVVLINKMDDP 103 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~ 103 (156)
+| +++|+||+|+.
T Consensus 130 ~P-iilVGnK~Dl~ 142 (202)
T cd04102 130 IP-LLVIGTKLDQI 142 (202)
T ss_pred ce-EEEEEECccch
Confidence 67 89999999985
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.3e-11 Score=80.38 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=74.0
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhh---hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGT---AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.|........ + ..+.+|||||+.. +......++ ..++++++++|..... ....
T Consensus 30 ~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~ 99 (170)
T cd01876 30 KTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP-------TEID 99 (170)
T ss_pred CCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC-------CHhH
Confidence 34455554433322 2 3999999999744 222333333 3467889999987653 1333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
......+...+.| +++++||+|+.... ........+...++.. . ...+++++||+++.|+.++.+
T Consensus 100 ~~~~~~l~~~~~~-vi~v~nK~D~~~~~----~~~~~~~~~~~~l~~~-~---~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 100 LEMLDWLEELGIP-FLVVLTKADKLKKS----ELAKALKEIKKELKLF-E---IDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred HHHHHHHHHcCCC-EEEEEEchhcCChH----HHHHHHHHHHHHHHhc-c---CCCceEEEecCCCCCHHHHHH
Confidence 4455666667778 89999999975321 2222333333333311 1 246899999999999887653
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=82.20 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=71.0
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+.+++++||||+. ..+...++.+|++++|+|++.+. ..+...++..+...+.|.+++++||+|+...
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~-------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~- 148 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF-------EMETFEFLNILQVHGFPRVMGVLTHLDLFKK- 148 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC-------CHHHHHHHHHHHHcCCCeEEEEEeccccCCc-
Confidence 367889999999964 55666778999999999998776 3455666777777788855569999997632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
........+.+...+...-+ ...+++++||++.-
T Consensus 149 --~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~ 182 (225)
T cd01882 149 --NKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHG 182 (225)
T ss_pred --HHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCC
Confidence 22234444455442221111 24699999999874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=89.11 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------------cCCCcEEEEE
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------------AGVKHLVVLI 97 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ivv~ 97 (156)
..+.||||+|+++|...+..+++++|++|+|+|.++. .+|.....|...+..... .++| +++|+
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr---~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVG 158 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR---RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIG 158 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEE
Confidence 5699999999999999999999999999999999873 333333344444433211 1367 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
||+|+.........-....+....+++..++.
T Consensus 159 NK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 159 NKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ECccccccccccccccccHHHHHHHHHHcCCC
Confidence 99998532100000011234556666777653
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=85.35 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=64.2
Q ss_pred CeEEEEEeCCCCcChH---HHHHhh---hhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHH-----HHcCCCcEEE
Q psy10355 29 RKHFTILDAPGHKSFV---PNMIGG---TAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLA-----KTAGVKHLVV 95 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~---~~~~~~---~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv 95 (156)
+..+.+|||||+.++. ..+... +.. ++++++|+|+..+. .+.+......+ ...+.| +++
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-------~~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK-------TPSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC-------CHHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3479999999986532 222222 222 79999999997643 12222222211 146788 799
Q ss_pred EEeCCCCCCcchhHHHHHHHH--------------------HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECK--------------------DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+||+|+............+. ..+...++..+ ...+++++||++++|+++|.
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~----~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG----LPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC----CCCcEEEEECCCCcCHHHHH
Confidence 999999864322211111111 01111222222 13589999999999998764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=80.52 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhh---hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH------H--cCCCcEEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGG---TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK------T--AGVKHLVVL 96 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~---~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~ivv 96 (156)
.+..+.++|+|||.++....... ...+.++|||+|++... .+..+...++. . .+.++++++
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~--------~~~~~~Ae~Ly~iL~~~~~~~~~~piLIa 118 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ--------KELRDVAEYLYDILSDTEVQKNKPPILIA 118 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHCCTT--EEEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch--------hhHHHHHHHHHHHHHhhhhccCCCCEEEE
Confidence 45679999999999987766665 78899999999997421 11221111111 1 233449999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHH
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILP 121 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~ 121 (156)
+||.|+..+.....-...+++++..
T Consensus 119 cNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 119 CNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp EE-TTSTT---HHHHHHHHHHHHHH
T ss_pred EeCccccccCCHHHHHHHHHHHHHH
Confidence 9999987665444434455555543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=83.74 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=84.0
Q ss_pred ccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCc------C------hHHHHHhhhhcCCEEEEEEeCCCCccccccCC
Q psy10355 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHK------S------FVPNMIGGTAQADLAVLVISARKGEFETGFDR 74 (156)
Q Consensus 7 ~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~------~------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~ 74 (156)
..+..++.-+|.....+.+..+..++.|.||||.- + +......++..||++++++|++...
T Consensus 97 v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr------- 169 (379)
T KOG1423|consen 97 VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR------- 169 (379)
T ss_pred cccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc-------
Confidence 34567778888999999999999999999999952 1 2334567778999999999998422
Q ss_pred CcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH---------HHHHHcCCCC-----------CCC
Q psy10355 75 GGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL---------PYLKKLGFNA-----------AKD 133 (156)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~ 133 (156)
..-.-..+..+. ..++| -|++.||+|.... ...+-.+++.+. +..+.....+ ...
T Consensus 170 ~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshf 245 (379)
T KOG1423|consen 170 TPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHF 245 (379)
T ss_pred CccChHHHHHHHHHhcCC-ceeeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccc
Confidence 111222233233 24688 5999999997532 111111111110 0111111111 012
Q ss_pred CeEEEeecccCCCCccCCC
Q psy10355 134 LSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 134 ~~~i~~Sa~~g~gi~~l~~ 152 (156)
-.+|.+||++|+||++|++
T Consensus 246 e~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 246 ERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred eeEEEEecccccCHHHHHH
Confidence 2589999999999998864
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=80.51 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=84.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-C--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC-CCcchHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-R--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD-RGGQTRE 80 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~-~~~~~~~ 80 (156)
++.+++++-+.+. +--...+..+ + ..+.+|||+|+++|-..+.-.+.++|+++++++..+.. +|. ....|..
T Consensus 26 ~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~---S~~nv~~kW~p 101 (198)
T KOG0393|consen 26 TNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPE---SFENVKSKWIP 101 (198)
T ss_pred cCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChh---hHHHHHhhhhH
Confidence 3456667666665 3333334442 4 45899999999999887778999999999999886643 221 1233433
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH---------HHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKD---------KILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.... .+.| +|+|++|.||.. +......+.. +.....+++|. ..++++||++..|+.+..
T Consensus 102 Ei~~~c-p~vp-iiLVGtk~DLr~---d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 102 EIKHHC-PNVP-IILVGTKADLRD---DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEVF 171 (198)
T ss_pred HHHhhC-CCCC-EEEEeehHHhhh---CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHHH
Confidence 333332 4688 999999999852 1222222221 12233344442 578999999999977654
Q ss_pred C
Q psy10355 152 I 152 (156)
Q Consensus 152 ~ 152 (156)
+
T Consensus 172 ~ 172 (198)
T KOG0393|consen 172 D 172 (198)
T ss_pred H
Confidence 3
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-10 Score=85.76 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 10 QKREKGKTVEVGRAYFETD-RKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+-+.-.|.+++...+.+. +..+.+.||-|+-+- .+.+......+|.+++|+|++++.+ ..+...
T Consensus 219 ~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~------~~~~~~ 292 (411)
T COG2262 219 VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEI------LEKLEA 292 (411)
T ss_pred ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhH------HHHHHH
Confidence 4455667889999999887 689999999998543 3456666788999999999988642 122233
Q ss_pred HHHHHHH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 81 HAMLAKT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 81 ~~~~~~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
....+.. ..+| +|+|.||+|+..... ....+ ... .. +.+++||++|+|++.|++
T Consensus 293 v~~vL~el~~~~~p-~i~v~NKiD~~~~~~-------~~~~~----~~~-----~~-~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 293 VEDVLAEIGADEIP-IILVLNKIDLLEDEE-------ILAEL----ERG-----SP-NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred HHHHHHHcCCCCCC-EEEEEecccccCchh-------hhhhh----hhc-----CC-CeEEEEeccCcCHHHHHH
Confidence 3333333 3467 899999999763211 01111 111 01 479999999999998764
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-10 Score=79.98 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=61.5
Q ss_pred cHHHhhcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..+++............ ..++.+|||+|++++...+..++.+++++++++|..... ..++....+...+...
T Consensus 30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~l~~~ 107 (219)
T COG1100 30 FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE--SSDELTEEWLEELREL 107 (219)
T ss_pred CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch--hhhHHHHHHHHHHHHh
Confidence 334444444444333333333 467999999999999999999999999999999997622 1111122222222222
Q ss_pred HHcCCCcEEEEEeCCCCCCc
Q psy10355 86 KTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.| ++++.||+|+...
T Consensus 108 ~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 108 APDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred CCCCce-EEEEecccccccc
Confidence 222467 8999999998643
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=86.11 Aligned_cols=111 Identities=26% Similarity=0.328 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
+-++|||.+||++|.+.+...+.+ .|...+.+.++.|+ ...+.+++..+....+| +.+|++|+|++.++.
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-------iGmTKEHLgLALaL~VP-VfvVVTKIDMCPANi 290 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-------IGMTKEHLGLALALHVP-VFVVVTKIDMCPANI 290 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-------eeccHHhhhhhhhhcCc-EEEEEEeeccCcHHH
Confidence 569999999999999998888854 79999999999998 47889999999999999 899999999986554
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC--------------------CCCCCeEEEeecccCCCCccCCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN--------------------AAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
- ++..+.+..+++..||. .+..+|+|.+|..+|+|++.|++
T Consensus 291 L----qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 291 L----QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred H----HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 3 33444455555544442 23467899999999999987764
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-10 Score=74.58 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=78.5
Q ss_pred eeeeeeEEEEeCC-eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEE
Q psy10355 17 TVEVGRAYFETDR-KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 17 t~~~~~~~~~~~~-~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 94 (156)
|-+.....+.+.+ ..+++||..|++..+.-|..|+.+.|++|+|+|+++. +.|+... ...+.+...+...+| +.
T Consensus 48 T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~---krfeE~~~el~ELleeeKl~~vp-vl 123 (185)
T KOG0074|consen 48 TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDE---KRFEEISEELVELLEEEKLAEVP-VL 123 (185)
T ss_pred cCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCch---HhHHHHHHHHHHHhhhhhhhccc-ee
Confidence 3445556666666 8999999999999999999999999999999998874 3333111 111222222234567 88
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+..||-|+..+... +++..++ ...++.. ..|.+-.+||++++|+..
T Consensus 124 IfankQdlltaa~~----eeia~kl----nl~~lrd-RswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 124 IFANKQDLLTAAKV----EEIALKL----NLAGLRD-RSWHIQECSALSLEGSTD 169 (185)
T ss_pred ehhhhhHHHhhcch----HHHHHhc----chhhhhh-ceEEeeeCccccccCccC
Confidence 89999998643221 2222111 1112211 357889999999999764
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=81.47 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=73.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+-+|.....+.++.+...++++||||..+- -.+...+++ -.++++|++|++... ++....|.. .+..
T Consensus 199 PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~-L~~e 274 (346)
T COG1084 199 PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQIS-LLEE 274 (346)
T ss_pred CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHH-HHHH
Confidence 456777888888888899999999998542 234555555 467899999997632 221111111 1222
Q ss_pred HH-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AK-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+ ..+.| +++|+||+|+. .....+++...+. ..+ ......+|+..+.+++.++
T Consensus 275 Ik~~f~~p-~v~V~nK~D~~----~~e~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~d~~~ 328 (346)
T COG1084 275 IKELFKAP-IVVVINKIDIA----DEEKLEEIEASVL----EEG-----GEEPLKISATKGCGLDKLR 328 (346)
T ss_pred HHHhcCCC-eEEEEeccccc----chhHHHHHHHHHH----hhc-----cccccceeeeehhhHHHHH
Confidence 22 24556 89999999976 2333444333322 221 1234667888888877654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=73.31 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL 123 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 123 (156)
.+......+++|++++|+|++++. ..+.......+...+.| +++++||+|+.. ...... ...+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~-------~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~----~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE-------LTRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEK----WKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc-------ccCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHH----HHHHH
Confidence 345566677899999999997754 13334444444556778 899999999852 111111 11122
Q ss_pred HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 124 KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 124 ~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. +.+++++||++|.|++.|.
T Consensus 67 ~~~------~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 67 ESE------GIPVVYVSAKERLGTKILR 88 (156)
T ss_pred HhC------CCcEEEEEccccccHHHHH
Confidence 211 3578999999999998764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=79.05 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=69.7
Q ss_pred CceeeeeeEEEEeCCeE-EEEEeCCCCcCh----HH---HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 15 GKTVEVGRAYFETDRKH-FTILDAPGHKSF----VP---NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~-~~iiDtpG~~~~----~~---~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
-+|..+..+...+++.. +++-|.||.-+- .. .-..-+..|+..+||+|.+.+.. ...-.+....+..+.
T Consensus 228 FTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~---~~p~~~~~lL~~ELe 304 (366)
T KOG1489|consen 228 FTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL---RNPWQQLQLLIEELE 304 (366)
T ss_pred eeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc---CCHHHHHHHHHHHHH
Confidence 45677777777777765 999999997321 11 12223345699999999987621 000112222222222
Q ss_pred H-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ...| .++|+||+|++.+ .. +.++++.+.+. +..++|+||++|+|++.|.
T Consensus 305 ~yek~L~~rp-~liVaNKiD~~ea--e~-------~~l~~L~~~lq-----~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 305 LYEKGLADRP-ALIVANKIDLPEA--EK-------NLLSSLAKRLQ-----NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred HHhhhhccCc-eEEEEeccCchhH--HH-------HHHHHHHHHcC-----CCcEEEeeeccccchHHHH
Confidence 1 2356 6899999997521 11 11233333331 2359999999999998764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=81.59 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=44.4
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
-+|..+.++.+++++.+++++|+||.-.- .+...+..++||.+++|+|+....
T Consensus 95 FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 95 FTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 56788889999999999999999997432 356888899999999999997543
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=73.57 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred hcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHH-----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 13 EKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPN-----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~-----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.-|.|.+.....+.. +...+.+||+||+..+... ....++++.++|+|+|+....+... .......+..+.
T Consensus 30 ~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~---l~~~~~~i~~l~ 106 (232)
T PF04670_consen 30 RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDED---LAYLSDCIEALR 106 (232)
T ss_dssp G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHH---HHHHHHHHHHHH
T ss_pred ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHH---HHHHHHHHHHHH
Confidence 457788777777764 5569999999999877554 5667799999999999974321100 011223333333
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
. .++. +-+++.|+|+...+.....+...++.+...+...+.. .+.++.||-+.
T Consensus 107 ~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 107 QYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 3 3455 8889999998776666666777778888877776542 46889999775
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=73.56 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=64.9
Q ss_pred eEEEEEeCCCCcChHHHH-----HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNM-----IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~-----~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+.+|||||+.+..... ...+..+|+++++.|. .. .......+..+...+.| +++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~--~~-------~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST--RF-------SSNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC--CC-------CHHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 479999999986432211 2225678988887543 22 23344555666666778 899999999843
Q ss_pred cch---------hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc--cCCCCccC
Q psy10355 105 VMW---------SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE--LEKNPLLL 150 (156)
Q Consensus 105 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~--~g~gi~~l 150 (156)
.+. ....++++++.+...++..+. ...+++.+|+. .+.|+..|
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~---~~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV---SEPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCC---CCCCEEEEeCCChhhcChHHH
Confidence 222 112244444455555544332 13479999998 45665544
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=67.48 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=58.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh---------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSF---------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~---------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
..++.|.......+.+++..+.++||||...- .......+..+|++++|+|+.... ......++
T Consensus 29 ~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-------~~~~~~~~ 101 (116)
T PF01926_consen 29 NIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-------TEDDKNIL 101 (116)
T ss_dssp SSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-------HHHHHHHH
T ss_pred ccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHH
Confidence 34678888877888899999999999998542 223555568899999999986632 13345555
Q ss_pred HHHHHcCCCcEEEEEeC
Q psy10355 83 MLAKTAGVKHLVVLINK 99 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK 99 (156)
..+. .+.| +++|+||
T Consensus 102 ~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 102 RELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHH-TTSE-EEEEEES
T ss_pred HHHh-cCCC-EEEEEcC
Confidence 6665 6667 8999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=68.74 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH
Q psy10355 45 PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPY 122 (156)
Q Consensus 45 ~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 122 (156)
+.....+..+|++++|+|+.++. ..+.......+... +.| +++++||+|+.. +..... ....
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~-------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~----~~~~~~----~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL-------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT----EEQRKA----WAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc-------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC----HHHHHH----HHHH
Confidence 35667889999999999998765 23344444555544 778 799999999852 111222 2223
Q ss_pred HHHcCCCCCCCCeEEEeecccCCC
Q psy10355 123 LKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 123 ~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
++.. ..+++++||++|.+
T Consensus 67 ~~~~------~~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKE------GIVVVFFSALKENA 84 (141)
T ss_pred HHhc------CCeEEEEEecCCCc
Confidence 3333 24789999999875
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=73.93 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=56.9
Q ss_pred ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH-
Q psy10355 42 SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL- 120 (156)
Q Consensus 42 ~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~- 120 (156)
.+...+..+++.+|++++|+|+++.. ..+...+ .....+.| +++|+||+|+....... ..++....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~--------~~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~---~~~~~~~~~ 89 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFP--------GSLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNL---VRIKNWLRA 89 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCC--------CccchhH-HHhcCCCc-EEEEEEchhcCCCCCCH---HHHHHHHHH
Confidence 35778888899999999999997643 1222222 12234667 89999999986322111 11111110
Q ss_pred HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 121 PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..++. ..+++++||++|.|+++|.
T Consensus 90 ~~~~~~~~~---~~~i~~vSA~~~~gi~eL~ 117 (190)
T cd01855 90 KAAAGLGLK---PKDVILISAKKGWGVEELI 117 (190)
T ss_pred HHHhhcCCC---cccEEEEECCCCCCHHHHH
Confidence 011222221 1368999999999998864
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=79.53 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=59.4
Q ss_pred cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH
Q psy10355 41 KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 41 ~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 120 (156)
+++......+++++|++++|+|+.+... ++ ......+..+...++| +++|+||+||... . ... .+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~---~-~~~--~~~~- 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD---E-DME--KEQL- 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccCCC---H-HHH--HHHH-
Confidence 4556666678999999999999986431 11 1122223334456788 7999999998531 1 111 1112
Q ss_pred HHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 121 PYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 121 ~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
..++.. +.+++.+||++|+|+++|.+
T Consensus 91 ~~~~~~------g~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 91 DIYRNI------GYQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred HHHHHC------CCeEEEEecCCchhHHHHHh
Confidence 222333 46899999999999988764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=85.41 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=81.0
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.+.|+|.|.....++.+|+.+.+.||+|.++ -.......+..+|++++|+|+..+.+ .....+.
T Consensus 298 pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t-------~sd~~i~ 370 (531)
T KOG1191|consen 298 PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT-------ESDLKIA 370 (531)
T ss_pred CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc-------ccchHHH
Confidence 4789999999999999999999999999976 13446667788999999999966553 2333333
Q ss_pred HHHHHcC-----------CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeE-EEeecccCCCCccC
Q psy10355 83 MLAKTAG-----------VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSF-MPCSGELEKNPLLL 150 (156)
Q Consensus 83 ~~~~~~~-----------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Sa~~g~gi~~l 150 (156)
+.+...+ ..+++++.||+|+.... .++......+....+. ...++ ..+|+++++|++.|
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~------~~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L 441 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI------PEMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERL 441 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCcc------ccccCCceeccccccC---cccceEEEeeechhhhHHHH
Confidence 3333211 13378999999986431 1111111111111111 13444 45999999999877
Q ss_pred C
Q psy10355 151 G 151 (156)
Q Consensus 151 ~ 151 (156)
.
T Consensus 442 ~ 442 (531)
T KOG1191|consen 442 S 442 (531)
T ss_pred H
Confidence 4
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-09 Score=71.85 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||- +...+....++++|++++|+|++.+.. .........+ .+.| .++++||+|+.. ......
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~----~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLAD----PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcCC----hHHHHH-
Confidence 36763 456778889999999999999976541 2222232222 3567 799999999852 111111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++.. ..+++++||++|.|+++|.
T Consensus 67 ---~~~~~~~~------~~~vi~iSa~~~~gi~~L~ 93 (171)
T cd01856 67 ---WLKYFESK------GEKVLFVNAKSGKGVKKLL 93 (171)
T ss_pred ---HHHHHHhc------CCeEEEEECCCcccHHHHH
Confidence 11222221 2468999999999998764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-09 Score=70.98 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=51.9
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLK 124 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 124 (156)
+..++..+|++++|+|+..+. ......+...+.. .+.| +++|+||+|+.. +.. +...+.. +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~-------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~----~~~---~~~~~~~-~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM-------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP----TWV---TARWVKI-LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc-------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC----HHH---HHHHHHH-Hh
Confidence 456788999999999998754 1334444444443 2477 799999999852 111 1222222 11
Q ss_pred HcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 125 KLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 125 ~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+. + ...++++||+++.|++.|
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSL 86 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHH
Confidence 11 1 123689999999998765
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-08 Score=71.51 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH---------------------HHH-----hhhh--cCCEEEEEEe
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP---------------------NMI-----GGTA--QADLAVLVIS 62 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~---------------------~~~-----~~~~--~~d~~ilvvD 62 (156)
.+.+++......+..++ .++.+|||||+.++.. ... ..+. .+++++++++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 33444555555566666 4699999999754321 111 1111 3678899998
Q ss_pred CCC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 63 ARK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 63 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
++. +. ...+.+.+..+.. ++| +++|+||+|+.. .......++.+...++..+
T Consensus 124 ~~~~~l-------~~~D~~~lk~l~~-~v~-vi~VinK~D~l~----~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 124 PTGHGL-------KPLDIEFMKRLSK-RVN-IIPVIAKADTLT----PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred CCCCCC-------CHHHHHHHHHHhc-cCC-EEEEEECCCcCC----HHHHHHHHHHHHHHHHHcC
Confidence 864 33 2334566666654 688 899999999863 2234456666766666655
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.6e-08 Score=67.81 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=59.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HH----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PN----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.+|.|.........+++.++.++||||+.+.. .. ...+..++|++++|+|+.. . ...+...
T Consensus 32 ~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~-------t~~d~~~ 103 (196)
T cd01852 32 ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-F-------TEEEEQA 103 (196)
T ss_pred CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-c-------CHHHHHH
Confidence 56889999999999999999999999986541 11 2223467899999999876 3 2445555
Q ss_pred HHHHHHc-C---CCcEEEEEeCCCCCCc
Q psy10355 82 AMLAKTA-G---VKHLVVLINKMDDPTV 105 (156)
Q Consensus 82 ~~~~~~~-~---~~~~ivv~NK~Dl~~~ 105 (156)
+..+... | ..++++++|+.|....
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCC
Confidence 5544432 2 2347899999996543
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-10 Score=78.62 Aligned_cols=104 Identities=19% Similarity=0.121 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
++..+.+|||+|++.|-..+..++++|.+.++|++.++. .+|+....|.+.+.. .-..+| .+++-||+|+.....
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr---~SFea~~~w~~kv~~-e~~~IP-tV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR---YSFEATLEWYNKVQK-ETERIP-TVFVQNKIDLVEDSQ 141 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH---HHHHHHHHHHHHHHH-HhccCC-eEEeeccchhhHhhh
Confidence 456688999999999999999999999999999998873 344433344433221 224688 799999999863211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
. -+.+.....+.+ ...++.+|++...|+.
T Consensus 142 ~------~~~evE~lak~l------~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 142 M------DKGEVEGLAKKL------HKRLYRTSVKEDFNVM 170 (246)
T ss_pred c------chHHHHHHHHHh------hhhhhhhhhhhhhhhH
Confidence 1 112222222332 2466888888776653
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=74.49 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred CCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHH
Q psy10355 38 PGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECK 116 (156)
Q Consensus 38 pG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~ 116 (156)
|||. +..+.....+..+|++++|+|+..+. ..........+ .+.| +++|+||+|+.. .....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~-------~~~~~~i~~~l--~~kp-~IiVlNK~DL~~----~~~~~--- 67 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPL-------SSRNPMIDEIR--GNKP-RLIVLNKADLAD----PAVTK--- 67 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CCCChhHHHHH--CCCC-EEEEEEccccCC----HHHHH---
Confidence 7774 44667888889999999999997654 12222233322 3567 799999999852 11111
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 117 DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ ....++.. +.+++++||+++.|++.|.
T Consensus 68 ~-~~~~~~~~------~~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 68 Q-WLKYFEEK------GIKALAINAKKGKGVKKII 95 (276)
T ss_pred H-HHHHHHHc------CCeEEEEECCCcccHHHHH
Confidence 1 11122222 2478999999999988763
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-09 Score=67.77 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=52.2
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKH 92 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 92 (156)
+.+..............+.+||++|+..+.......+..+|++++|+|.++.. ++....+....+..... .++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~~~~~~~~~~l~~~~~~~~~~p- 110 (119)
T PF08477_consen 35 EITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SLEYLSQLLKWLKNIRKRDKNIP- 110 (119)
T ss_dssp TSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HHHHHHHHHHHHHHHHHHSSCSE-
T ss_pred CCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChH---HHHHHHHHHHHHHHHHccCCCCC-
Confidence 33444333444444556999999999988877666699999999999998743 11111111112222222 3577
Q ss_pred EEEEEeCCC
Q psy10355 93 LVVLINKMD 101 (156)
Q Consensus 93 ~ivv~NK~D 101 (156)
+++++||.|
T Consensus 111 iilv~nK~D 119 (119)
T PF08477_consen 111 IILVGNKSD 119 (119)
T ss_dssp EEEEEE-TC
T ss_pred EEEEEeccC
Confidence 899999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=75.76 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
...+++++|.+++|+|+.+..+ .. .....+..+...++| +++|+||+|+.. ...... ....++.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~------~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~----~~~~~~----~~~~~~~ 147 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPL------DPWQLSRFLVKAESTGLE-IVLCLNKADLVS----PTEQQQ----WQDRLQQ 147 (352)
T ss_pred echhhhcCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEchhcCC----hHHHHH----HHHHHHh
Confidence 4456889999999999975431 11 223344444456888 799999999862 111111 2222333
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. +++++++||++|+|+++|..
T Consensus 148 ~------g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 148 W------GYQPLFISVETGIGLEALLE 168 (352)
T ss_pred c------CCeEEEEEcCCCCCHHHHhh
Confidence 3 35789999999999988754
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=67.21 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=48.1
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKD 133 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (156)
|++++|+|+.++. ........ ..+...+.| +|+|+||+|+.. ... +.+.+..+ .... .
T Consensus 1 Dvvl~VvD~~~p~-------~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~----~~~---~~~~~~~~-~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPL-------GTRSPDIERVLIKEKGKK-LILVLNKADLVP----KEV---LRKWLAYL-RHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCc-------cccCHHHHHHHHhcCCCC-EEEEEechhcCC----HHH---HHHHHHHH-HhhC-----C
Confidence 7899999997754 12233333 344456788 899999999853 111 11111111 2111 2
Q ss_pred CeEEEeecccCCCCccCCC
Q psy10355 134 LSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 134 ~~~i~~Sa~~g~gi~~l~~ 152 (156)
.+++++||++|.|++.|.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 4789999999999988754
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-08 Score=72.21 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=69.2
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCc-----------ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHK-----------SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~-----------~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
-+|..+..+.+.. .+..|++-|.||.- +|.++.+ .|.++++|||.+... ..+.......+.
T Consensus 191 FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE----Rt~vL~hviD~s~~~---~~dp~~~~~~i~ 263 (369)
T COG0536 191 FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE----RTRVLLHVIDLSPID---GRDPIEDYQTIR 263 (369)
T ss_pred cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH----hhheeEEEEecCccc---CCCHHHHHHHHH
Confidence 4566666666665 55669999999973 3454444 458999999997532 001112222233
Q ss_pred HHHHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.. .+.| .++|+||+|++. ..+.++.+++.+.. ..++ ....++||.+++|++.|-
T Consensus 264 ~EL~~Y~~~L~~K~-~ivv~NKiD~~~---~~e~~~~~~~~l~~---~~~~-----~~~~~ISa~t~~g~~~L~ 325 (369)
T COG0536 264 NELEKYSPKLAEKP-RIVVLNKIDLPL---DEEELEELKKALAE---ALGW-----EVFYLISALTREGLDELL 325 (369)
T ss_pred HHHHHhhHHhccCc-eEEEEeccCCCc---CHHHHHHHHHHHHH---hcCC-----CcceeeehhcccCHHHHH
Confidence 33322 3567 699999999653 23334444433332 2222 122339999999998763
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=70.75 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.4
Q ss_pred eEEEEEeCCCC----cChHH---HHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGH----KSFVP---NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~----~~~~~---~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+.+|||||. +++.. .....+++||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999998 33333 45556899999999999963
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.7e-08 Score=73.05 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||. +-.+.....+..+|++++|+|+..+. ........... .+.| +++|+||+|+.. ......
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~-------~~~~~~l~~~~--~~kp-~iiVlNK~DL~~----~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPL-------SSENPMIDKII--GNKP-RLLILNKSDLAD----PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CCCChhHHHHh--CCCC-EEEEEEchhcCC----HHHHHH-
Confidence 47774 34566788889999999999997654 12222222222 2667 799999999852 111111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++.. +.+++++||+++.|++.|.
T Consensus 72 ---~~~~~~~~------~~~vi~vSa~~~~gi~~L~ 98 (287)
T PRK09563 72 ---WIEYFEEQ------GIKALAINAKKGQGVKKIL 98 (287)
T ss_pred ---HHHHHHHc------CCeEEEEECCCcccHHHHH
Confidence 12222222 2478999999999988764
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-08 Score=75.12 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=62.4
Q ss_pred CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 40 HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 40 ~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
.++|......+.+.++++++|+|+.+.. ..+...+.... .+.| +++|+||+|+...... .+.+++.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~~---~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSVN---LSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCCC---HHHHHHHH
Confidence 3467777777778999999999996643 22333332222 2557 8999999998643211 23344444
Q ss_pred HHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 120 LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++..++. ...++++||++|.|+++|.
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELL 145 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHH
Confidence 4555655542 1258999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-08 Score=67.34 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...|..|||+|++.+......++-++.|+++.+|.+.... +...++|..-+...+ .++| +++++||+|.....
T Consensus 58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t---~~n~~rwhrd~~rv~-~NiP-iv~cGNKvDi~~r~-- 130 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT---YKNVPRWHRDLVRVR-ENIP-IVLCGNKVDIKARK-- 130 (216)
T ss_pred cEEEEeeecccceeecccccccEEecceeEEEeeeeehhh---hhcchHHHHHHHHHh-cCCC-eeeeccceeccccc--
Confidence 3789999999999999999999999999999999875431 222344544433333 3589 99999999953210
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+. +...+....+..++.+||++..|.+.
T Consensus 131 ------~k~------k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 131 ------VKA------KPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred ------ccc------ccceeeecccceeEEeeccccccccc
Confidence 111 11122222467899999999888764
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-08 Score=66.05 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred ccHHHhhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-H
Q psy10355 7 WLRQKREKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-M 83 (156)
Q Consensus 7 ~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~ 83 (156)
...+|++....+..-...+.. -...|.+||..|++++..+...+...+-+++|.+|.++... -.....| +
T Consensus 44 ~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T-------LnSi~~WY~ 116 (205)
T KOG1673|consen 44 EYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST-------LNSIKEWYR 116 (205)
T ss_pred hhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH-------HHHHHHHHH
Confidence 344555444444444444444 44669999999999999999999999999999999987531 1122222 3
Q ss_pred HHHHcC---CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAG---VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~---~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
+++..+ +| |++++|.|+.- ...++..+.+..+...+.+-. +.+.|.+|+.+..|+.+
T Consensus 117 QAr~~NktAiP--ilvGTKyD~fi-~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 117 QARGLNKTAIP--ILVGTKYDLFI-DLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQK 176 (205)
T ss_pred HHhccCCccce--EEeccchHhhh-cCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHH
Confidence 344333 55 78999999632 223333444444455555544 46789999999888765
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-08 Score=71.71 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=52.1
Q ss_pred EEEEEeCCCCcChHHHHHh------hhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIG------GTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~------~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|||||.++...+.. .+. ..=++++++|+........| ..........+.+.+.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f--~s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKF--VSSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHH--HHHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhH--HHHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 7999999999776443222 222 33489999998653200000 01111122334446899 6999999998
Q ss_pred CCcchhHHHHHHHH-------------HHH-HHHHHHcCCCCCCCC-eEEEeecccCCCCccC
Q psy10355 103 PTVMWSEARYNECK-------------DKI-LPYLKKLGFNAAKDL-SFMPCSGELEKNPLLL 150 (156)
Q Consensus 103 ~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l 150 (156)
.... .....+... +.+ ..+++.+. ..... +++|+|+.+++|++.|
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~--~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLD--DFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCC--CCSSS---EE-BTTTTTTHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh--hcCCCceEEEEECCChHHHHHH
Confidence 7522 111111110 111 11222221 11134 8999999999998875
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-08 Score=72.54 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=52.7
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
++++|++++|+|+.+..+ .... ...+..+...++| +++|+||+|+.. ....... ....++..
T Consensus 78 aaniD~vllV~d~~~p~~------~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~---~~~~~~~----~~~~~~~~--- 140 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDF------STDLLDRFLVLAEANGIK-PIIVLNKIDLLD---DLEEARE----LLALYRAI--- 140 (298)
T ss_pred eecCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEhHHcCC---CHHHHHH----HHHHHHHC---
Confidence 489999999999965431 1111 2333445567888 799999999852 1111111 22223333
Q ss_pred CCCCCeEEEeecccCCCCccCCC
Q psy10355 130 AAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 130 ~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.+++++||++|+|+++|.+
T Consensus 141 ---g~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 141 ---GYDVLELSAKEGEGLDELKP 160 (298)
T ss_pred ---CCeEEEEeCCCCccHHHHHh
Confidence 35899999999999988754
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=71.44 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.++.+.|+||+|...-. ......+|.+++|+++..+. ....... ....+. -++|+||+|+....
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd----------~iq~~k~-gi~E~a-DIiVVNKaDl~~~~- 210 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD----------ELQGIKK-GIMELA-DLIVINKADGDNKT- 210 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH----------HHHHHHh-hhhhhh-heEEeehhcccchh-
Confidence 46889999999987322 22466799999998743332 1111110 011223 28899999986422
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......++...+....-. +....|++++||++|+|+++|-
T Consensus 211 ---~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~ 252 (332)
T PRK09435 211 ---AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW 252 (332)
T ss_pred ---HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence 2233344444444332100 0113589999999999998864
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=71.40 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=62.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHH---HHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTRE---HAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~---~~~~~~~- 87 (156)
+.-|.+.....+.+++..+.+||++|++..++.|..++.+++++++|+|.++.. +...+. .....+ .+..+..
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d-~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYD-QVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcc-cccccCCcchHHHHHHHHHHHHHhC
Confidence 345677888889999999999999999999999999999999999999997632 000000 011222 2222221
Q ss_pred ---cCCCcEEEEEeCCCC
Q psy10355 88 ---AGVKHLVVLINKMDD 102 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl 102 (156)
.+.| +++++||.|+
T Consensus 224 ~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 224 RWFANTS-IILFLNKKDL 240 (317)
T ss_pred ccccCCC-EEEEccChHH
Confidence 3577 9999999995
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=70.00 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=63.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchH---HHHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTR---EHAMLAKT 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~---~~~~~~~~ 87 (156)
-+--|.+.....+.+++..+.+||.+|++..++.|..++.++++++||+|.++.. +..++. ..... ..+..+..
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d-~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYD-QVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccc-cchhccCcchHHHHHHHHHHHHHc
Confidence 3455677788889999999999999999999999999999999999999998631 000000 01122 22222221
Q ss_pred ----cCCCcEEEEEeCCCCC
Q psy10355 88 ----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~ 103 (156)
.+.| +++++||.|+.
T Consensus 246 ~~~~~~~p-iil~~NK~D~~ 264 (342)
T smart00275 246 SRWFANTS-IILFLNKIDLF 264 (342)
T ss_pred CccccCCc-EEEEEecHHhH
Confidence 3567 99999999964
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=69.80 Aligned_cols=82 Identities=22% Similarity=0.168 Sum_probs=52.3
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
+.++|.+++|+|+.++.+ + .......+..+...++| +++|+||+|+... .. . .. ........
T Consensus 76 ~anvD~vllV~d~~~p~~----s-~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~---~~---~-~~-~~~~~~~~---- 137 (287)
T cd01854 76 AANVDQLVIVVSLNEPFF----N-PRLLDRYLVAAEAAGIE-PVIVLTKADLLDD---EE---E-EL-ELVEALAL---- 137 (287)
T ss_pred EEeCCEEEEEEEcCCCCC----C-HHHHHHHHHHHHHcCCC-EEEEEEHHHCCCh---HH---H-HH-HHHHHHhC----
Confidence 788999999999977531 0 01223334444556888 7999999998632 11 0 11 11111222
Q ss_pred CCCCeEEEeecccCCCCccCCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+.+++++||++|.|++.|..
T Consensus 138 --g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 138 --GYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred --CCeEEEEECCCCccHHHHHh
Confidence 46899999999999987754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-07 Score=68.35 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=59.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.++.+.|+||||... ........+|.++++.++..+. ....... ...+.| .++++||+|+.....
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~----------el~~~~~-~l~~~~-~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD----------DLQGIKA-GLMEIA-DIYVVNKADGEGATN 189 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH----------HHHHHHH-HHhhhc-cEEEEEcccccchhH
Confidence 578899999999642 2334566788888886553321 1111111 123567 589999999864321
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......+...+...... .....+++++||++|+|+++|.
T Consensus 190 ----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~ 230 (300)
T TIGR00750 190 ----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELW 230 (300)
T ss_pred ----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHH
Confidence 111111111111111100 0012469999999999998864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=64.90 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=74.5
Q ss_pred EeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC-CcEEEEE
Q psy10355 26 ETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV-KHLVVLI 97 (156)
Q Consensus 26 ~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~ 97 (156)
.+++..+++|||||..+ +......++...|.+++++|+.+.. ...+...++.....+. .++++++
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra-------L~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA-------LGTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc-------ccCCHHHHHHHHHhccCceeEEEE
Confidence 35678899999999976 6677888889999999999997765 2445555555554433 3489999
Q ss_pred eCCCCCCcc--h-------hHHHHHHHHHH---HHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 98 NKMDDPTVM--W-------SEARYNECKDK---ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 98 NK~Dl~~~~--~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|-+|++... | .+...+.+.++ +..++++ -.|++..|+..+-|++.|
T Consensus 156 tQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 156 TQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred ehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 999975441 1 11222222222 3333333 248888888888888765
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=67.92 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCC----------cChHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGH----------KSFVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~----------~~~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..|.|..+ ++..-+..+.++|.||+ .++.+.+..|+.+ --.+.+++|++.+. .+.+.
T Consensus 169 K~g~Tq~i---n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~ 238 (320)
T KOG2486|consen 169 KNGKTQAI---NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDN 238 (320)
T ss_pred CCccceee---eeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCCh
Confidence 44544433 34445688999999994 2345556666543 34677888998887 57788
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcch--hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMW--SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++.++.+.++| +.+|.||||...... .......++..+..+.++. +. ...|++.+|+.++.|++.|.
T Consensus 239 ~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f~--~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 239 PEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-FL--VDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred HHHHHHhhcCCC-eEEeeehhhhhhhccccccCccccceeehhhccccc-ee--ccCCceeeecccccCceeee
Confidence 889999999999 899999999632110 0000000011011111111 11 24578899999999999875
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=61.17 Aligned_cols=86 Identities=21% Similarity=0.173 Sum_probs=62.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEE
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVV 95 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv 95 (156)
|..++...+...+..|+-+|..||..-+..|..++..+|++++.||+.+. .+|.......+.+ ......+.| +++
T Consensus 51 TlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~---er~~es~~eld~ll~~e~la~vp-~li 126 (193)
T KOG0077|consen 51 TLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQ---ERFAESKKELDALLSDESLATVP-FLI 126 (193)
T ss_pred CcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhH---HHhHHHHHHHHHHHhHHHHhcCc-cee
Confidence 44455556778899999999999999999999999999999999999763 2222222222222 222235788 799
Q ss_pred EEeCCCCCCcc
Q psy10355 96 LINKMDDPTVM 106 (156)
Q Consensus 96 v~NK~Dl~~~~ 106 (156)
..||+|.+.+.
T Consensus 127 lgnKId~p~a~ 137 (193)
T KOG0077|consen 127 LGNKIDIPYAA 137 (193)
T ss_pred ecccccCCCcc
Confidence 99999987654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=67.89 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..++|.+++|++..... ++ ......+..+...++| .++|+||+|+.... ....+.+ ....++..
T Consensus 118 aANvD~vlIV~s~~p~~---s~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~----~~~~~~~-~~~~y~~~---- 181 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL---SL---NIIDRYLVACETLGIE-PLIVLNKIDLLDDE----GRAFVNE-QLDIYRNI---- 181 (347)
T ss_pred EEEccEEEEEEeCCCCC---CH---HHHHHHHHHHHhcCCC-EEEEEECccCCCcH----HHHHHHH-HHHHHHhC----
Confidence 46789999999876533 11 1222333444556788 68999999986321 1111222 22223333
Q ss_pred CCCCeEEEeecccCCCCccCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.+++++||++|+|+++|.
T Consensus 182 --g~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 182 --GYRVLMVSSHTGEGLEELE 200 (347)
T ss_pred --CCeEEEEeCCCCcCHHHHH
Confidence 3589999999999998765
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-06 Score=62.35 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=56.7
Q ss_pred CceeeeeeEEEEeCC-eEEEEEeCCCCcCh-------------HHHHHhhhhc-CCEEEEEEeCCCCccccccCCCcch-
Q psy10355 15 GKTVEVGRAYFETDR-KHFTILDAPGHKSF-------------VPNMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQT- 78 (156)
Q Consensus 15 g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~-------------~~~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~- 78 (156)
+++-+.....+...+ ..|+++||||.... ..++..|+++ .+.+++|+|+..+.. .+.
T Consensus 109 ~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~ 181 (240)
T smart00053 109 GISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDA 181 (240)
T ss_pred cccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhH
Confidence 444444444444433 57999999998521 2346677774 458999999987762 333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
.++.+.+...+.+ .++|+||+|...
T Consensus 182 l~ia~~ld~~~~r-ti~ViTK~D~~~ 206 (240)
T smart00053 182 LKLAKEVDPQGER-TIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHHHcCCc-EEEEEECCCCCC
Confidence 5677777777888 799999999763
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=65.94 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred CeEEEEEeCCCCcChH------HHHHhhhh-c-CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFV------PNMIGGTA-Q-ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~------~~~~~~~~-~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..++.++||||+-.-. .....++. . .-++++|+|..+--....| -.+.......+.+.+.| +|++.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp-~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLP-FIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCC-eEEEEecc
Confidence 3679999999985421 11111222 2 2478889998543210000 12223333555667889 89999999
Q ss_pred CCCCcchhH---HHHHHHHHHHHH--------HHHHcCCCC---CCCCeEEEeecccCCCCccC
Q psy10355 101 DDPTVMWSE---ARYNECKDKILP--------YLKKLGFNA---AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 101 Dl~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+....+.. .+++..++.+.+ .....++.- .++...+.+|+.+|.|.+.+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf 255 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF 255 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence 987654322 123443333331 000000000 13568899999999998865
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=67.01 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=54.0
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
+.++|.+++|+++..+.. .......+..+...+++ .++|+||+||... . +...+.+... .
T Consensus 110 aANvD~vliV~s~~p~~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~---~---~~~~~~~~~~----~--- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFN------LRRIERYLALAWESGAE-PVIVLTKADLCED---A---EEKIAEVEAL----A--- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCC------hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC---H---HHHHHHHHHh----C---
Confidence 578999999999965441 12344566667778999 5889999998631 1 1111222221 1
Q ss_pred CCCCeEEEeecccCCCCccCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++++||++|.|++.|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred -CCCcEEEEECCCCccHHHHH
Confidence 25689999999999998865
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=69.65 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred eEEEEEeCCCCcCh-------HH-HHHhhhhc-CCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGHKSF-------VP-NMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~~~~-------~~-~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~N 98 (156)
..+.++||||..+- +. ..+.++.. -.+++++.|.+..- +++...|.. .+..++ -.+.| .|+|+|
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---GySva~Qvk-LfhsIKpLFaNK~-~IlvlN 289 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GYSVAAQVK-LYHSIKPLFANKV-TILVLN 289 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CCCHHHHHH-HHHHhHHHhcCCc-eEEEee
Confidence 46999999997542 11 23333333 34788999987532 111111111 111111 13667 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
|+|+.....- .+-.+++...+... .+++++.+|+.+.+|+..+++
T Consensus 290 K~D~m~~edL----~~~~~~ll~~~~~~-----~~v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 290 KIDAMRPEDL----DQKNQELLQTIIDD-----GNVKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred cccccCcccc----CHHHHHHHHHHHhc-----cCceEEEecccchhceeeHHH
Confidence 9997643322 22223333333333 257999999999999988765
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=65.98 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHhhhhcCC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQAD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
+...+...+ .+++|+|+.+.. ..+...+.... .+.| +++|+||+|+...... .+.+++.+....+.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~~---~~~i~~~l~~~~k~ 128 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSVK---KNKVKNWLRQEAKE 128 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCccC---HHHHHHHHHHHHHh
Confidence 556666666 889999997643 23333333322 2567 8999999998642211 22333344444555
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.|+. ...++.+||++|.|+++|.
T Consensus 129 ~g~~---~~~v~~vSAk~g~gI~eL~ 151 (365)
T PRK13796 129 LGLR---PVDVVLISAQKGHGIDELL 151 (365)
T ss_pred cCCC---cCcEEEEECCCCCCHHHHH
Confidence 5542 1268999999999998764
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-07 Score=64.18 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcC--CCcEEEEEeCCCCCCc
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAG--VKHLVVLINKMDDPTV 105 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~ivv~NK~Dl~~~ 105 (156)
..+.+||.+|+++|..++.-+++.+.++.+|+|.++.. .|+....|.+.+.--. ..| +| +++..||+|.-.
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~---tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~- 149 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSL---TFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEK- 149 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccc---cccHHHHHHHhccCcccCCCCCcch-heeccchhccCh-
Confidence 35889999999999999999999999999999998743 2333333433321111 123 45 688999999631
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....+.-..+..+.+.+||. .++.+|++...|+++.
T Consensus 150 ----~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 150 ----SAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEA 185 (229)
T ss_pred ----HhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHH
Confidence 12222234466777888874 4599999999998764
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=59.22 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
....+.|+||||.... ...+..+++.+|++|+|+++.... .......+........+.+++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~-------~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDL-------TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTG-------GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCccc-------chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4467999999998542 356888889999999999998865 23344444545544445589999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-06 Score=56.42 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=61.0
Q ss_pred EEeCCCC----cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 34 ILDAPGH----KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 34 iiDtpG~----~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
.+||||- +++..........+|++++|-.++++. ..|. +. .+.-...| .|-+++|.|++. .
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~--s~f~--p~------f~~~~~k~-vIgvVTK~DLae----d 105 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE--SRFP--PG------FLDIGVKK-VIGVVTKADLAE----D 105 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc--ccCC--cc------cccccccc-eEEEEecccccc----h
Confidence 6899994 344444566667899999999887763 1111 11 11112345 788999999873 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++.. .+.++.+.|. -++|.+|+....|+++|.
T Consensus 106 ~dI~~----~~~~L~eaGa-----~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 106 ADISL----VKRWLREAGA-----EPIFETSAVDNQGVEELV 138 (148)
T ss_pred HhHHH----HHHHHHHcCC-----cceEEEeccCcccHHHHH
Confidence 33343 3344455553 488999999999998764
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=62.21 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred ceeeeee---EEEEeC-----CeEEEEEeCCCCcC-------------------------hHHH----HHhhhh-cCCEE
Q psy10355 16 KTVEVGR---AYFETD-----RKHFTILDAPGHKS-------------------------FVPN----MIGGTA-QADLA 57 (156)
Q Consensus 16 ~t~~~~~---~~~~~~-----~~~~~iiDtpG~~~-------------------------~~~~----~~~~~~-~~d~~ 57 (156)
+|.++++ ..++.. ...+.++||+|+.. |... +...+. .+|.+
T Consensus 69 tTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIg 148 (492)
T TIGR02836 69 MTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIG 148 (492)
T ss_pred ccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEE
Confidence 8888888 334331 26799999999732 1111 444455 78999
Q ss_pred EEEE-eCCCCcc-ccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 58 VLVI-SARKGEF-ETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 58 ilvv-D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
|+|. |++-+.. +..+ .......+..++..++| +++++||.|
T Consensus 149 ivVtTDgsi~dI~Re~y--~~aEe~~i~eLk~~~kP-fiivlN~~d 191 (492)
T TIGR02836 149 VVVTTDGTITDIPREDY--VEAEERVIEELKELNKP-FIILLNSTH 191 (492)
T ss_pred EEEEcCCCccccccccc--hHHHHHHHHHHHhcCCC-EEEEEECcC
Confidence 9998 8752110 0000 13345566778888999 899999999
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=61.78 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=65.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHHHHHHH---H
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREHAMLAK---T 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~~~~~~---~ 87 (156)
-|--|.++....|.+.+..+-++|.+|++.-++.|...+.+++++|||++.++.. +..++. ..+..+.+.+.. .
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYd-q~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYD-QVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhh-hhcccccchhHHHHHHHHHHHHhc
Confidence 3456888899999999999999999999999999999999999999999987543 111211 112222222222 1
Q ss_pred ----cCCCcEEEEEeCCCCC
Q psy10355 88 ----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~ 103 (156)
.+.+ +|+.+||.|+.
T Consensus 257 ~~~F~~ts-iiLFLNK~DLF 275 (354)
T KOG0082|consen 257 NKWFANTS-IILFLNKKDLF 275 (354)
T ss_pred CcccccCc-EEEEeecHHHH
Confidence 2456 99999999974
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00074 Score=49.88 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=51.8
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChH------HH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFV------PN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+.|.........+++..+.+|||||..+.. .. ...++. ..+++++|...+.... ...+...+
T Consensus 64 ~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~ll 137 (249)
T cd01853 64 SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLL 137 (249)
T ss_pred CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHH
Confidence 556777777778889999999999987652 11 222232 5678888865543211 12233444
Q ss_pred HHHHH-cCC---CcEEEEEeCCCCCCc
Q psy10355 83 MLAKT-AGV---KHLVVLINKMDDPTV 105 (156)
Q Consensus 83 ~~~~~-~~~---~~~ivv~NK~Dl~~~ 105 (156)
..+.. .|. .++++|+||+|....
T Consensus 138 k~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 138 RAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43332 231 248999999997543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.4e-06 Score=59.45 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=78.1
Q ss_pred HHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHh-----hhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIG-----GTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~-----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+-+..|-|++.......+ ++..+++||+.|++.+.+...+ .+++.+++++|+|+....+++.+. ..+..+.
T Consensus 32 D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le 108 (295)
T KOG3886|consen 32 DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLE 108 (295)
T ss_pred hhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHH
Confidence 345678888888888766 4478999999999977665444 567899999999997654321111 1222233
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
.+... ... +.+.+.|+|+..-+.....+++-++.+..+-.. ..+.++|+|-+.
T Consensus 109 ~ll~~SP~Ak-iF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~------~~~~~f~TsiwD 163 (295)
T KOG3886|consen 109 ALLQNSPEAK-IFCLLHKMDLVQEDARELIFQRRKEDLRRLSRP------LECKCFPTSIWD 163 (295)
T ss_pred HHHhcCCcce-EEEEEeechhcccchHHHHHHHHHHHHHHhccc------ccccccccchhh
Confidence 33322 234 788999999876555554444444444332221 135678887764
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.9e-06 Score=58.05 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=55.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
+..+.+++|.|.-... ..+....+..+.|+|+..+. .... ......+.+ .++++||+|+....
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d--------~~~~---~~~~~~~~a-~iiv~NK~Dl~~~~-- 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGD--------DKPL---KYPGMFKEA-DLIVINKADLAEAV-- 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCccc--------chhh---hhHhHHhhC-CEEEEEHHHccccc--
Confidence 4578899999831111 11112345667788886543 1111 111223456 58999999986321
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+..+.+. ..+ ...+++++||++|+|++.+.
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHH
Confidence 111233333332 222 24689999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=58.30 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=56.3
Q ss_pred hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 49 GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 49 ~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
.-..+.|-+++|+.+..+.+. .......+..+...|+.+ ++++||+|+... ..... ++....+..+
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~----~~~~~--~~~~~~y~~~-- 140 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIEP-VIVLNKIDLLDD----EEAAV--KELLREYEDI-- 140 (301)
T ss_pred CcccccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCcE-EEEEEccccCcc----hHHHH--HHHHHHHHhC--
Confidence 334557778888888766531 123345666667788885 889999998742 11221 3344445555
Q ss_pred CCCCCCeEEEeecccCCCCccCCC
Q psy10355 129 NAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 129 ~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++++.+|++++.|+++|..
T Consensus 141 ----gy~v~~~s~~~~~~~~~l~~ 160 (301)
T COG1162 141 ----GYPVLFVSAKNGDGLEELAE 160 (301)
T ss_pred ----CeeEEEecCcCcccHHHHHH
Confidence 46899999999999987653
|
|
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-05 Score=56.94 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=51.3
Q ss_pred eEEEEEeCCCC-----------cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGH-----------KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~-----------~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.+++++||||. .+|......++..+|.+++++|+..-.. ..+..+.+..++...-. +-+|+|
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI------sdEf~~vi~aLkG~Edk-iRVVLN 219 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI------SDEFKRVIDALKGHEDK-IRVVLN 219 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc------cHHHHHHHHHhhCCcce-eEEEec
Confidence 46999999996 3567778888899999999999965332 35566677766654444 778999
Q ss_pred CCCCC
Q psy10355 99 KMDDP 103 (156)
Q Consensus 99 K~Dl~ 103 (156)
|.|..
T Consensus 220 KADqV 224 (532)
T KOG1954|consen 220 KADQV 224 (532)
T ss_pred ccccc
Confidence 99976
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=55.69 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=55.9
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE--EEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL--VVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ivv~NK~Dl~~~~ 106 (156)
+....++.|.|.. ...... ...+|.+|.|+|+..+. ...... ..++. + ++++||+|+...
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~--------~~~~~~-----~~qi~-~ad~~~~~k~d~~~~- 152 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGD--------KIPRKG-----GPGIT-RSDLLVINKIDLAPM- 152 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhh--------hhhhhh-----HhHhh-hccEEEEEhhhcccc-
Confidence 4568899999931 110111 12258899999997754 100110 11222 3 789999998632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.......+.+.++.+ + ...+++++||++|+|++++.
T Consensus 153 -~~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 153 -VGADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred -ccccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHH
Confidence 112233333444332 2 24689999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=60.11 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred cCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHHH---HHHHH
Q psy10355 14 KGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREHA---MLAKT 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~~---~~~~~ 87 (156)
+.-|.++....+.+ ++..+.++|..|++.-++.|...+.+++++|||++.++.. +..++. .....+.+ ..+..
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd-q~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD-QTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG-SBESSSTTSBHHHHHHHHHHHHHT
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchh-hhhcccchHHHHHHHHHHHHHHHh
Confidence 45678888889999 9999999999999999999999999999999999986432 111111 12232323 22222
Q ss_pred ----cCCCcEEEEEeCCCC
Q psy10355 88 ----AGVKHLVVLINKMDD 102 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl 102 (156)
.+.| +|+++||+|+
T Consensus 298 ~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp SGGGTTSE-EEEEEE-HHH
T ss_pred CcccccCc-eEEeeecHHH
Confidence 2456 9999999995
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=49.82 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+.+.++|||+... ......+..+|.+++++.++... .......+..+...+.+ +.+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~-------~~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSG-------LHDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCccc-------HHHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 578899999997643 34556778999999999886543 13344555666667778 68999999953
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00064 Score=50.85 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCeEEEEEeCCCCcChHHHHH-------hhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMI-------GGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~-------~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.++.+.++||||......... .... .+|..++|+|++.+. +......... ..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 568899999999764322211 1111 378999999997643 2233222222 33433 6
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++||+|....... +..+.... +.|+..++ +|++++.|..
T Consensus 222 ~IlTKlDe~~~~G~----------~l~~~~~~------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 222 IILTKLDGTAKGGI----------ILSIAYEL------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEEccCCCCCccH----------HHHHHHHH------CcCEEEEe--CCCChHhCcc
Confidence 68999997532111 11111222 35777777 8888877753
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=49.19 Aligned_cols=70 Identities=27% Similarity=0.202 Sum_probs=44.8
Q ss_pred eEEEEEeCCCCcCh-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSF-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~ 103 (156)
.++.|.||+|.... ...-..++.-+|+.++|+++.+.. +|+........+...+ ...+| ++++.||+|+.
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~ 131 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRA 131 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HHHHHHHHHHHHhhcccccccc-EEEEechhhcc
Confidence 46999999999888 444455667789999999997743 2221111111111111 13467 89999999985
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.4e-05 Score=61.06 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=68.2
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHH--cCCCcEEEEEe
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ivv~N 98 (156)
+..+.-+....+++||+.-.+-.......++.||++.++++.+++. .++. ...|..+++.... .++| +|+|.|
T Consensus 48 PadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~---T~D~ist~WLPlir~~~~~~~~~P-VILvGN 123 (625)
T KOG1707|consen 48 PADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES---TVDRISTKWLPLIRQLFGDYHETP-VILVGN 123 (625)
T ss_pred CCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH---HhhhhhhhhhhhhhcccCCCccCC-EEEEee
Confidence 3333445566899999977766666788899999999999887632 1111 2344444444331 3578 999999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|........ .+ ..+..++.+.. +--..|.+||++-.++.++
T Consensus 124 K~d~~~~~~~s--~e---~~~~pim~~f~----EiEtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 124 KSDNGDNENNS--DE---VNTLPIMIAFA----EIETCIECSALTLANVSEL 166 (625)
T ss_pred ccCCccccccc--hh---HHHHHHHHHhH----HHHHHHhhhhhhhhhhHhh
Confidence 99975432220 01 11222222110 0114577888887776654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=49.79 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=28.4
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHH--HHHcCCCcEEEEEeCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAML--AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ivv~NK~Dl~ 103 (156)
|++++|+|+..+. .......... +...+.| .|+++||+|+.
T Consensus 1 DvVl~VvDar~p~-------~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPL-------GCRCPQVEEAVLQAGGNKK-LVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCC-------CCCCHHHHHHHHhccCCCC-EEEEEehhhcC
Confidence 7899999997764 2333334333 3334667 79999999986
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=54.15 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
-++.++|+-|-|--.-- .....-+|.+++|.=+.-|. ..+.+. ..-..+-. |+|+||.|+.++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD----------~~Q~iK-~GimEiaD-i~vINKaD~~~A-- 204 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGD----------DLQGIK-AGIMEIAD-IIVINKADRKGA-- 204 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCc----------HHHHHH-hhhhhhhh-eeeEeccChhhH--
Confidence 35778888888853211 22234578888887664443 222111 11112332 779999996543
Q ss_pred hHHHHHHHHHHHHHH---HHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPY---LKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.....++...+... ....+ +..|++.+||.+|+|+++|
T Consensus 205 -~~a~r~l~~al~~~~~~~~~~~----W~ppv~~t~A~~g~Gi~~L 245 (323)
T COG1703 205 -EKAARELRSALDLLREVWRENG----WRPPVVTTSALEGEGIDEL 245 (323)
T ss_pred -HHHHHHHHHHHHhhcccccccC----CCCceeEeeeccCCCHHHH
Confidence 11233333333221 11222 3568999999999999876
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=50.40 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 94 (156)
.++.+.++||||..... ....... ...+..++|+|++.+. ......... ...++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 56789999999975421 1222211 2357789999998753 222222222 223333 6
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+++||+|...... . +....... +.|+..++ +|++++.|..
T Consensus 264 iIlTKlD~t~~~G-~---------~l~~~~~~------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 264 IILTKLDGTAKGG-V---------VFAIADEL------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EEEECCCCCCCcc-H---------HHHHHHHH------CCCEEEEe--CCCChhhCcc
Confidence 7999999643211 1 11122222 46888887 8999988754
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=52.40 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-HHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-HAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
-++.++|+-|.|.-.- -.....-+|.+++|+-+..|. .-|... -+.. +.. |+|+||.|+.+
T Consensus 120 aG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD-------~iQ~~KaGimE-----iaD-i~vVNKaD~~g-- 181 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGD-------EIQAIKAGIME-----IAD-IFVVNKADRPG-- 181 (266)
T ss_dssp TT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCC-------CCCTB-TTHHH-----H-S-EEEEE--SHHH--
T ss_pred cCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCcc-------HHHHHhhhhhh-----hcc-EEEEeCCChHH--
Confidence 4578899999885321 223356789999999886654 112211 0111 232 77999999542
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+....++...+....- ...+..|++.+||.+|+|+++|.
T Consensus 182 -----A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~ 222 (266)
T PF03308_consen 182 -----ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELW 222 (266)
T ss_dssp -----HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHH
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHH
Confidence 33444445555543321 11124589999999999998764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=47.12 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=49.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHH----hhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMI----GGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~----~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
....|.........+++..+.++||||+.+- ..... ....+.+++++|+...+ . .......
T Consensus 32 ~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~-------t~~~~~~ 103 (212)
T PF04548_consen 32 AKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-F-------TEEDREV 103 (212)
T ss_dssp TSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB---------SHHHHHH
T ss_pred cCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-c-------hHHHHHH
Confidence 3456777777777899999999999997542 12222 23456899999999863 2 2334444
Q ss_pred HHHHHH-cC---CCcEEEEEeCCCCCC
Q psy10355 82 AMLAKT-AG---VKHLVVLINKMDDPT 104 (156)
Q Consensus 82 ~~~~~~-~~---~~~~ivv~NK~Dl~~ 104 (156)
+..+.. .| ..+.+++.+..|...
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHccHHHHhHhhHHhhhccccc
Confidence 433332 23 345888999888544
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00048 Score=38.92 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-Hc-CCCcEEEEEeCCC
Q psy10355 46 NMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TA-GVKHLVVLINKMD 101 (156)
Q Consensus 46 ~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ivv~NK~D 101 (156)
....+++ -.++++|++|++..- ++....|.. .+..++ .. +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~-L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYSIEEQLS-LFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHH-HHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCCHHHHHH-HHHHHHHHcCCCC-EEEEEeccC
Confidence 3445554 467999999998643 111111111 222222 23 677 899999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=50.15 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||..... ....... .+.|.+++|+|+..+. ...+...... ..++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC--EEEEeee
Confidence 35679999999976432 2222221 2568899999997652 3333333333 34555 6689999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
|........ + ...... +.|+..++ +|++++.|..
T Consensus 290 D~~~~~G~~---------l-s~~~~~------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 290 DADAKGGAA---------L-SIAYVI------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cCCCCccHH---------H-HHHHHH------CcCEEEEe--CCCChhhccc
Confidence 975321111 1 111112 45888877 7999987754
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00075 Score=52.52 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred EEEeCC-eEEEEEeCCCCcChHHHHHh-----hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 24 YFETDR-KHFTILDAPGHKSFVPNMIG-----GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 24 ~~~~~~-~~~~iiDtpG~~~~~~~~~~-----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
.|.... -++.+||.||...-.-.... .+...|.+|++.+. .- ...+......+...|.+ +.+|-
T Consensus 79 ~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~-rf--------~~ndv~La~~i~~~gK~-fyfVR 148 (376)
T PF05049_consen 79 PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE-RF--------TENDVQLAKEIQRMGKK-FYFVR 148 (376)
T ss_dssp EEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS-S----------HHHHHHHHHHHHTT-E-EEEEE
T ss_pred eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC-CC--------chhhHHHHHHHHHcCCc-EEEEE
Confidence 344444 35999999997432222222 34567987776643 21 24566677778888989 89999
Q ss_pred eCCCCCCc--------ch-hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC
Q psy10355 98 NKMDDPTV--------MW-SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK 145 (156)
Q Consensus 98 NK~Dl~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~ 145 (156)
+|+|.... .+ ....++++++.+..-++..|.. ..++|.+|+..-.
T Consensus 149 TKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 149 TKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFDLS 202 (376)
T ss_dssp --HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTTTT
T ss_pred ecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCCcc
Confidence 99995110 11 1223455555555556655542 4589999987643
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00074 Score=49.98 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=65.4
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHH----
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKT---- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~---- 87 (156)
-|-+|.++....|..+..+|+..|..|+++-...|+..+...-++|||+.+++...-..-+. +.+..+.+.+.+.
T Consensus 185 cRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN 264 (379)
T KOG0099|consen 185 CRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN 264 (379)
T ss_pred hhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh
Confidence 46778888889999999999999999999999999999999999999998875321000010 1222333333222
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
..+. +|+.+||-|+.
T Consensus 265 RwL~tis-vIlFLNKqDll 282 (379)
T KOG0099|consen 265 RWLRTIS-VILFLNKQDLL 282 (379)
T ss_pred hHHhhhh-eeEEecHHHHH
Confidence 2355 89999999974
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.012 Score=44.73 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=45.7
Q ss_pred eeeeeEEEEeCCeEEEEEeCCCCcChH---HHHHhhhh------cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 18 VEVGRAYFETDRKHFTILDAPGHKSFV---PNMIGGTA------QADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~iiDtpG~~~~~---~~~~~~~~------~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
..........++..+.+|||||..+.. ......++ ..|++++|...+.... ...+...+..+..
T Consensus 74 ~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~ 147 (313)
T TIGR00991 74 LRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDS 147 (313)
T ss_pred eeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHH
Confidence 333344455688999999999987642 12222222 5899999955432111 1222333332222
Q ss_pred cC---CCcEEEEEeCCCCC
Q psy10355 88 AG---VKHLVVLINKMDDP 103 (156)
Q Consensus 88 ~~---~~~~ivv~NK~Dl~ 103 (156)
.| ..+.|+++|+.|..
T Consensus 148 FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 148 FGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhhhhccEEEEEECCccC
Confidence 12 13489999999965
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00056 Score=49.71 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=46.8
Q ss_pred CCeEEEEEeC-CCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDA-PGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDt-pG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++|| +|.+.|.+ ...+++|.+|.|+|++.... .....+-......++.++.+++||+|-
T Consensus 132 ~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3477899998 57666653 34467899999999976541 334445566667786669999999993
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0004 Score=52.72 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=67.8
Q ss_pred eeeeeeEEEEe-CCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 17 TVEVGRAYFET-DRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 17 t~~~~~~~~~~-~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
|.+++...... ++..+.+.||-|+-.- ...+..-...+|.++.|+|.+.+.+ ..+....+.-+..
T Consensus 212 TLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~a------e~q~e~Vl~vL~~ 285 (410)
T KOG0410|consen 212 TLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNA------EEQRETVLHVLNQ 285 (410)
T ss_pred eccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccH------HHHHHHHHHHHHh
Confidence 34444333333 4577999999998532 2234445577999999999988764 2444455566666
Q ss_pred cCCC------cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVK------HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~------~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.++| .+|=|-||+|..... ...+....+++||++|.|++++.
T Consensus 286 igv~~~pkl~~mieVdnkiD~e~~~----------------------~e~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 286 IGVPSEPKLQNMIEVDNKIDYEEDE----------------------VEEEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred cCCCcHHHHhHHHhhcccccccccc----------------------CccccCCccccccccCccHHHHH
Confidence 6664 245588888853211 00012236899999999998764
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00059 Score=48.20 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc----EEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQAD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH----LVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ivv~NK~Dl~~ 104 (156)
..+.|+-..|. +. -. ....-.| .-|+|+|.++|.- . + ..+-|. =++|+||.|++.
T Consensus 97 ~Dll~iEs~GN--L~-~~-~sp~L~d~~~v~VidvteGe~--~----P----------~K~gP~i~~aDllVInK~DLa~ 156 (202)
T COG0378 97 LDLLFIESVGN--LV-CP-FSPDLGDHLRVVVIDVTEGED--I----P----------RKGGPGIFKADLLVINKTDLAP 156 (202)
T ss_pred CCEEEEecCcc--ee-cc-cCcchhhceEEEEEECCCCCC--C----c----------ccCCCceeEeeEEEEehHHhHH
Confidence 46777777772 11 11 1222334 8899999988751 0 0 011121 167999999863
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. ...+++.+.+.. ++.+ .+.|||.+|+++|+|++.+
T Consensus 157 ~--v~~dlevm~~da----~~~n----p~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 157 Y--VGADLEVMARDA----KEVN----PEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred H--hCccHHHHHHHH----HHhC----CCCCEEEEeCCCCcCHHHH
Confidence 2 111223333333 2222 2579999999999998864
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=53.60 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=57.0
Q ss_pred hcCceeeeeeEEEEeCC---eEEEEEeCCCCc-------------ChHHHHHhhhhcCCEEEEEE-eCCCCccccccCCC
Q psy10355 13 EKGKTVEVGRAYFETDR---KHFTILDAPGHK-------------SFVPNMIGGTAQADLAVLVI-SARKGEFETGFDRG 75 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~~ilvv-D~~~~~~~~~~~~~ 75 (156)
..|-|+..-...++..| -.+.++|.||.- ........++.+.+++|+|+ |++... + .
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA-E-----R 465 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA-E-----R 465 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch-h-----h
Confidence 45777777777676654 469999999962 34566778889999999887 333222 1 1
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
...-..+..+...|.. -|+|++|+|++..
T Consensus 466 SnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred hhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 1122334444455666 6999999998754
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=47.10 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=42.6
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
-+|....++.+.+++..+.++|.||.-.- .++..+..+.||.++.|+|++..
T Consensus 94 FTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 94 FTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 45677888889999999999999997432 34567778899999999999764
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=52.32 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcC---hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 31 HFTILDAPGHKS---FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 31 ~~~iiDtpG~~~---~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+.++|.||..- +....-+....+|++|+|+.+.... -+.+..+-.....+.|.++++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl--------t~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL--------TLSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh--------HHHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 699999999743 3445556667899999999986654 233444444444557878889999996432
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCC--CCCeEEEeeccc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAA--KDLSFMPCSGEL 143 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~Sa~~ 143 (156)
.++..+.+.+++. +++-.-. -.-.++.+||+.
T Consensus 277 e~ec~e~V~~Qi~----eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 EPECKEDVLKQIH----ELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cHHHHHHHHHHHH----hcCcccHhhhcCeeEEEeccc
Confidence 2333333333332 2221100 123578899664
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=42.30 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred eeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------H-HHHHhhhh--------------cCCEEEEEEeCCCC
Q psy10355 17 TVEVGRAYFETDRK--HFTILDAPGHKSF-------------V-PNMIGGTA--------------QADLAVLVISARKG 66 (156)
Q Consensus 17 t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~-~~~~~~~~--------------~~d~~ilvvD~~~~ 66 (156)
.+....-.++.++. +++++||||+-+. + .+...|++ ...|+++.+.++-.
T Consensus 89 eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh 168 (336)
T KOG1547|consen 89 EIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH 168 (336)
T ss_pred EEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC
Confidence 33344444455554 5899999998542 1 12222321 24689999988754
Q ss_pred ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
.. .+-+.+.+..+.+. +. +|-|+-|.|...-.. ..+.++.+..-+..+++
T Consensus 169 sL------rplDieflkrLt~v-vN-vvPVIakaDtlTleE----r~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 169 SL------RPLDIEFLKRLTEV-VN-VVPVIAKADTLTLEE----RSAFKQRIRKELEKHGI 218 (336)
T ss_pred cc------CcccHHHHHHHhhh-he-eeeeEeecccccHHH----HHHHHHHHHHHHHhcCc
Confidence 32 35556666555432 34 677999999654322 23344445544454443
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00061 Score=51.25 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
-++++||+|+... ....++.+.+.+ +.++ ...+++++||++|+|++.|.
T Consensus 233 DIVVLNKiDLl~~--~~~dle~~~~~l----r~ln----p~a~I~~vSA~tGeGld~L~ 281 (290)
T PRK10463 233 SLMLLNKVDLLPY--LNFDVEKCIACA----REVN----PEIEIILISATSGEGMDQWL 281 (290)
T ss_pred cEEEEEhHHcCcc--cHHHHHHHHHHH----HhhC----CCCcEEEEECCCCCCHHHHH
Confidence 3889999998631 112233333333 3222 24689999999999998763
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0092 Score=39.96 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl 102 (156)
+.+.++|||+.. .......+..+|.++++++++.... ......+..+.. .+..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 789999999864 3344678899999999998865321 222334434332 233347899999983
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.019 Score=43.19 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcCh-------------HHH-HHhhh-------------hcCCEEEEEEeC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSF-------------VPN-MIGGT-------------AQADLAVLVISA 63 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~-------------~~~-~~~~~-------------~~~d~~ilvvD~ 63 (156)
.+...+......+..++ ..++++||||+.+. +.. ...++ ...+++++++++
T Consensus 44 ~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p 123 (281)
T PF00735_consen 44 SRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP 123 (281)
T ss_dssp -SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred ccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence 34455555555555554 46999999997532 110 01111 124799999998
Q ss_pred CC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 64 RK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 64 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
+. ++ .+.+.+.+..+. ..++ +|-|+.|.|... ...+..+++.+..-++..+.
T Consensus 124 t~~~L-------~~~Di~~mk~Ls-~~vN-vIPvIaKaD~lt----~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 124 TGHGL-------KPLDIEFMKRLS-KRVN-VIPVIAKADTLT----PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp TSSSS--------HHHHHHHHHHT-TTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT-
T ss_pred CCccc-------hHHHHHHHHHhc-cccc-EEeEEecccccC----HHHHHHHHHHHHHHHHHcCc
Confidence 64 33 233444444433 2356 899999999763 44566777777777766653
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.028 Score=43.53 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=60.2
Q ss_pred hcCceeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------HHH-HHhhh-------h-------cCCEEEEEEe
Q psy10355 13 EKGKTVEVGRAYFETDRK--HFTILDAPGHKSF-------------VPN-MIGGT-------A-------QADLAVLVIS 62 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~~~-~~~~~-------~-------~~d~~ilvvD 62 (156)
++++.+......+..++. .++++||||+-++ +.. -..++ + ..+++++.+-
T Consensus 63 ~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~ 142 (373)
T COG5019 63 SPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIR 142 (373)
T ss_pred CcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEec
Confidence 344445555445555553 5999999998553 111 11111 1 2468999998
Q ss_pred CCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 63 ARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
++..-. .+.+.+.+..+. ..+. +|-|+.|.|..+ ...++..++.+...++..+
T Consensus 143 Ptgh~l------~~~DIe~Mk~ls-~~vN-lIPVI~KaD~lT----~~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 143 PTGHGL------KPLDIEAMKRLS-KRVN-LIPVIAKADTLT----DDELAEFKERIREDLEQYN 195 (373)
T ss_pred CCCCCC------CHHHHHHHHHHh-cccC-eeeeeeccccCC----HHHHHHHHHHHHHHHHHhC
Confidence 764321 234444443333 2456 888999999764 3346666777777666654
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0075 Score=48.46 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
+....+..+|++|.+||+....+.. .+....++.... .. .+.++++||.||... ..+ ..-..++..
T Consensus 167 QLWRVlErSDivvqIVDARnPllfr----~~dLe~Yvke~d-~~-K~~~LLvNKaDLl~~---~qr-----~aWa~YF~~ 232 (562)
T KOG1424|consen 167 QLWRVLERSDIVVQIVDARNPLLFR----SPDLEDYVKEVD-PS-KANVLLVNKADLLPP---EQR-----VAWAEYFRQ 232 (562)
T ss_pred HHHHHHhhcceEEEEeecCCccccC----ChhHHHHHhccc-cc-cceEEEEehhhcCCH---HHH-----HHHHHHHHh
Confidence 3445566789999999998876311 122222322221 11 337999999998742 111 112223333
Q ss_pred cCCCCCCCCeEEEeeccc
Q psy10355 126 LGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~ 143 (156)
++++++..||.-
T Consensus 233 ------~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 233 ------NNIPVVFFSALA 244 (562)
T ss_pred ------cCceEEEEeccc
Confidence 357999999986
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0049 Score=47.26 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=58.7
Q ss_pred EEEeCCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHH
Q psy10355 33 TILDAPGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEAR 111 (156)
Q Consensus 33 ~iiDtpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~ 111 (156)
.+-+-|||. ++.......+..+|+++-|+|+.+... .....+.+.. .+.+ .++++||.|+...
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~-------s~~~~l~~~v--~~k~-~i~vlNK~DL~~~------ 76 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLG-------TRNPELERIV--KEKP-KLLVLNKADLAPK------ 76 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEecccccc-------ccCccHHHHH--ccCC-cEEEEehhhcCCH------
Confidence 445568884 456677888889999999999987651 2222222222 2345 4889999998742
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 112 YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+++....+.++. +...+.+|+..+.+...+.
T Consensus 77 -~~~~~W~~~~~~~~------~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 77 -EVTKKWKKYFKKEE------GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred -HHHHHHHHHHHhcC------CCccEEEEeecccCccchH
Confidence 11223232222221 3456788888887766543
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0045 Score=49.14 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCcChHH----HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||...... ..... ....+-++||+|++.|. ............-.+ --+++||+|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~-~g~IlTKlD 250 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDV-GSVIITKLD 250 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCC-cEEEEECcc
Confidence 367899999999754322 22222 23467899999998763 233344444332123 367899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 64
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=46.21 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=35.2
Q ss_pred hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCC
Q psy10355 43 FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 43 ~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~ 104 (156)
|.+.....+..+|++|-|+||.++.- ....+.-.... ..|-.++|+|+||+|+..
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhccCC
Confidence 44455555677899999999988761 22222222221 234244999999999974
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0032 Score=49.40 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=40.7
Q ss_pred hcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 13 EKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+++|+++..+.+.+.+ .++.++||||... +.......++.+|++++|+|+.
T Consensus 51 ~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 51 FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 47889998888887653 3599999999743 3345666788999999999984
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=39.88 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=44.0
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++||||.... .....+..+|.+|+++++.... .......+..+...+.+.+.+++|+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS-------LRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch-------HHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986443 3556678999999999886543 1233344455555555546789999985
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.023 Score=41.87 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCcChHHH---HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPN---MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~---~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl 102 (156)
..|.+||.||+-++... .....+++-+.|+|+|+.+... ..-..-+....+. .++. +=+.+-|+|-
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~------eala~L~~~v~raykvNp~in-~EVfiHKvDG 147 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYM------EALARLHMTVERAYKVNPNIN-FEVFIHKVDG 147 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHH------HHHHHHHHHhhheeecCCCce-EEEEEEeccC
Confidence 56899999999776432 4566788999999999966431 0111111112222 2345 6778999995
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
...+...+....+.+...+-+...|.... .+.+..+|-.
T Consensus 148 Lsdd~kietqrdI~qr~~d~l~d~gle~v-~vsf~LTSIy 186 (347)
T KOG3887|consen 148 LSDDFKIETQRDIHQRTNDELADAGLEKV-QVSFYLTSIY 186 (347)
T ss_pred CchhhhhhhHHHHHHHhhHHHHhhhhccc-eEEEEEeeec
Confidence 43333333333344444444555555321 3345556543
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=46.28 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=39.9
Q ss_pred hcCceeeeeeEEEEeCCe-----------------EEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 13 EKGKTVEVGRAYFETDRK-----------------HFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~-----------------~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+++|+++..+.+.+.+. ++.++|+||..+ +.......++.+|++++|||+.
T Consensus 28 ~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 28 YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 478888888888777653 599999999753 2334556678999999999984
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=40.49 Aligned_cols=66 Identities=20% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||...+ ........ ...+.+++|+|+.... ...+.. ......++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 4567999999998533 22222222 2479999999986532 222222 222334543 5678999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9753
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0071 Score=41.09 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||.. ......+..+|-+++|..+... +....+.. .....-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 46789999999964 3334588899999999877532 12222211 1122233 77999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0079 Score=41.50 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|||+... ......+ ..+|.+++|+.+.... .......+..+...+.+..-+++|+.+-
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVA-------LDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhh-------HHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 568899999999743 2223333 5789999999876533 2445566677777788755689999984
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0051 Score=46.99 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=45.1
Q ss_pred cCCCcEEEEEeCCCCC-----CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDP-----TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.|+| +++|++|+|.. ...+..+.++.++..++.+|-.+| ...|.+|++...|++-|
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G------aaLiyTSvKE~KNidll 281 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG------AALIYTSVKETKNIDLL 281 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC------ceeEEeecccccchHHH
Confidence 4677 89999999973 233555678999999999998775 57899999999998765
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.013 Score=41.71 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
..+.+.|+|||..... .......+.+|.+|+|+++.... .......+..+...+.+.+-+|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~-------~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIK-------KRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCC-------HHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 3477999999974322 12233456789999999986543 23445555666667777567799999954
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0094 Score=46.39 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=40.3
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+++|+++..+.+...+ .++.++|+||..+ +.......++.+|++++|||+.
T Consensus 31 nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 31 NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 347889888887777655 2599999999743 2334566678999999999985
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=37.62 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=40.1
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC---cEEEEEeC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK---HLVVLINK 99 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ivv~NK 99 (156)
.+.++|||+.... .....+..+|.++++++++... .......+..+...+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPS-------IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHH-------HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999997543 3456778899999999886543 13334444444444432 47788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.053 Score=43.36 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.|+||||....... ....+..+|.+++|+|++.+. +.......... .++.--+++||+|.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~-~l~i~gvIlTKlD~ 244 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHE-AVGIGGIIITKLDG 244 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHh-cCCCCEEEEecccC
Confidence 357999999997654322 223344678999999997642 23333333222 22312568999995
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 245 ~ 245 (437)
T PRK00771 245 T 245 (437)
T ss_pred C
Confidence 4
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=41.24 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCcChHH----HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
++..+.++||||...... .+...+ ...+-+++|+|++.+. .............++. =++++|+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~--~lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGID--GLILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTC--EEEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCc--eEEEEeec
Confidence 456899999999765422 222222 2467899999997753 2233333333445666 34699999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
...
T Consensus 152 et~ 154 (196)
T PF00448_consen 152 ETA 154 (196)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.081 Score=43.55 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=75.1
Q ss_pred eeeeeeEEEEe---CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE
Q psy10355 17 TVEVGRAYFET---DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL 93 (156)
Q Consensus 17 t~~~~~~~~~~---~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (156)
|++-..++++. ..+.++|+.+|. -...++...+-+|.+++++|++-|. .-.+.+.+..+...|.|++
T Consensus 97 ti~~i~GPiTvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfGf-------EMETmEFLnil~~HGmPrv 166 (1077)
T COG5192 97 TIDEIRGPITVVSGKTRRITFLECPS---DLHQMIDVAKIADLVLLLIDGNFGF-------EMETMEFLNILISHGMPRV 166 (1077)
T ss_pred hhhccCCceEEeecceeEEEEEeChH---HHHHHHhHHHhhheeEEEeccccCc-------eehHHHHHHHHhhcCCCce
Confidence 34444444443 447799999992 3445667778899999999998876 3567788888888999998
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHH-HHHHHcCCCCCCCCeEEEeeccc
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKIL-PYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
+-|++-.|+.. .+..+..+++.++ .+..++ + .+..+|.+|..-
T Consensus 167 lgV~ThlDlfk---~~stLr~~KKrlkhRfWtEi-y---qGaKlFylsgV~ 210 (1077)
T COG5192 167 LGVVTHLDLFK---NPSTLRSIKKRLKHRFWTEI-Y---QGAKLFYLSGVE 210 (1077)
T ss_pred EEEEeeccccc---ChHHHHHHHHHHhhhHHHHH-c---CCceEEEecccc
Confidence 88999999864 2334556665554 233222 1 245677777653
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.13 Score=40.06 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred HhhcCceeeeeeEEEEeCCe--EEEEEeCCCCcCh-------------HHH-HHhh-----------hh--cCCEEEEEE
Q psy10355 11 KREKGKTVEVGRAYFETDRK--HFTILDAPGHKSF-------------VPN-MIGG-----------TA--QADLAVLVI 61 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~-------------~~~-~~~~-----------~~--~~d~~ilvv 61 (156)
+..+.+.+......++-++. +++++||||+-++ +.. -..+ +. ..+|+++.+
T Consensus 58 ~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI 137 (366)
T KOG2655|consen 58 RIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFI 137 (366)
T ss_pred CccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEe
Confidence 33445556666566665654 5899999998543 111 1111 11 357999999
Q ss_pred eCCCC-ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 62 SARKG-EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 62 D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
.++.. + .+.+.+....+. ..++ +|-|+-|.|..+ ...+..+++.+...+...+
T Consensus 138 ~P~ghgL-------~p~Di~~Mk~l~-~~vN-iIPVI~KaD~lT----~~El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 138 SPTGHGL-------KPLDIEFMKKLS-KKVN-LIPVIAKADTLT----KDELNQFKKRIRQDIEEHN 191 (366)
T ss_pred CCCCCCC-------cHhhHHHHHHHh-cccc-ccceeeccccCC----HHHHHHHHHHHHHHHHHcC
Confidence 87643 3 244444444333 3566 788999999764 3345666666666665554
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0097 Score=40.81 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=38.0
Q ss_pred CeEEEEEeCCCCcChHHH--------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPN--------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~--------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+..++||||..+-... .....-..|.+++++|+..... .. .+......++... . ++++||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~--~~---~~~~~~~~Qi~~a--d--~ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQ--HL---DQQTEAQSQIAFA--D--RILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHH--Hh---hccHHHHHHHHHC--C--EEEEecc
Confidence 457899999998653222 2223445789999999865431 00 1112222333322 3 6699999
Q ss_pred CC
Q psy10355 101 DD 102 (156)
Q Consensus 101 Dl 102 (156)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 95
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.064 Score=42.79 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCcChHH----HHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||...... .... ..-..+.+++|+|+..+ ........... ..++. =+++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~--giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT--GVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 456799999999643321 1111 12346888999999754 22333333333 23444 4579999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 953
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=41.06 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|||+... ..+...+..+|.++++++++.... .............+.+.+.+++|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSI-------TDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchH-------HHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 357899999998654 345566778999999998854321 222333344444566645689999984
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.092 Score=41.97 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||.... ........ -..+.+++|+|+..+. .......... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---------~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---------DAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---------HHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4577999999996532 22211111 2467789999986542 2333333333 23333 4578999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 953
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0061 Score=45.20 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=40.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCc
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGE 67 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~ 67 (156)
++|.-...+...+++-++.+.|.||.-+- .++.+...+.|+.+++|+|...+.
T Consensus 91 fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 91 FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 45555666667788999999999997432 446777788999999999986543
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.096 Score=37.10 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl 102 (156)
..+.+.|+||||.. ......++..+|.+|+++.++.... ....+....+..... .+.+.+.++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDI----WAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhH----HHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 45789999999974 3456778889999999998865321 001122222222221 245545667787763
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.028 Score=44.37 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 30 KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+.++||||... ........++.+|++++|+|+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5689999999632 2334556689999999999996
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.017 Score=41.70 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCcCh------HHHHHhhhhcCC---EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 30 KHFTILDAPGHKSF------VPNMIGGTAQAD---LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 30 ~~~~iiDtpG~~~~------~~~~~~~~~~~d---~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+.++|+||+-.+ .+.....+.+-+ |+++++|+.=-. .+....+.....+..+....+|| |=+++||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v--D~~KfiSG~lsAlsAMi~lE~P~-INvlsKM 174 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV--DSTKFISGCLSALSAMISLEVPH-INVLSKM 174 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh--hHHHHHHHHHHHHHHHHHhcCcc-hhhhhHH
Confidence 46899999998543 233333443322 678888873211 00000122334455566678996 8899999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|+..
T Consensus 175 DLlk 178 (273)
T KOG1534|consen 175 DLLK 178 (273)
T ss_pred HHhh
Confidence 9864
|
|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.043 Score=40.99 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=43.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+... .....++..+|.+++|++++... .......+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~s-------i~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITA-------IRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHH-------HHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998643 34556667789999998875432 1233344455555555546789999983
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.24 Score=41.76 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcCh------HHH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSF------VPN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~------~~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.++|. ........++..+.+|||||..+. ... ...++. .+|++|+|........ .......
T Consensus 151 ~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~a 223 (763)
T TIGR00993 151 MGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPL 223 (763)
T ss_pred CCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHH
Confidence 44443 444455668899999999998753 111 222333 4788888876542210 1122223
Q ss_pred HHHHHH-cC---CCcEEEEEeCCCCCC
Q psy10355 82 AMLAKT-AG---VKHLVVLINKMDDPT 104 (156)
Q Consensus 82 ~~~~~~-~~---~~~~ivv~NK~Dl~~ 104 (156)
+..+.. .| ..++||+.|..|...
T Consensus 224 Lr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 224 LRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 332221 22 355899999999764
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.045 Score=43.04 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=31.7
Q ss_pred hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC-CCcEEEEEeCCCCCC
Q psy10355 49 GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG-VKHLVVLINKMDDPT 104 (156)
Q Consensus 49 ~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivv~NK~Dl~~ 104 (156)
..+..+|++|-|+|+.++. ..+..-+..+++... -.|+|.|+||+||..
T Consensus 209 KViDSSDVvvqVlDARDPm-------GTrc~~ve~ylkke~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPM-------GTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred HhhcccceeEEeeeccCCc-------ccccHHHHHHHhhcCCcceeEEEeecccccc
Confidence 3345679999999998865 122222333444322 346999999999864
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.057 Score=40.42 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=41.9
Q ss_pred CeEEEEEeCCCCcCh----HHHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.++||||.... ...+...+. ..+-++||+|++... .+..+.+......++. =++++|.|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~--~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHID--GIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCC--EEEEEeecC
Confidence 578999999997643 222333332 346789999987542 3344555555555555 458999997
Q ss_pred CC
Q psy10355 103 PT 104 (156)
Q Consensus 103 ~~ 104 (156)
+.
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 53
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.054 Score=39.70 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+.... .+..++..+|.+++++.+.... .......+..+...+...+.+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSA-------VRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHH-------HHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 478999999986532 3456678899999999875432 1233344444554454336789999984
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.34 Score=34.89 Aligned_cols=67 Identities=12% Similarity=-0.029 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCcChHHH-HHhhhhc--CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPN-MIGGTAQ--ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~-~~~~~~~--~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+.++|||........ ....+.. +|.+++|+.+.... .......+..+...+.+..-+++|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s-------~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP-------LYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH-------HHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 88999999975333222 2333333 47899999886543 24556667777777777567899999853
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.084 Score=39.37 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.|+|+|--- .-....++.++|.+|+|.-++.-- .++....+......++| ..+|+||.+.
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~g-------lhD~kr~~el~~~f~ip-~~iViNr~~~ 226 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFG-------LHDLKRALELVEHFGIP-TGIVINRYNL 226 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccc-------hhHHHHHHHHHHHhCCc-eEEEEecCCC
Confidence 478999988431 235678889999999999887543 25667777888889999 6889999974
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.062 Score=42.10 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCcCh---HHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-CCCc------EE
Q psy10355 28 DRKHFTILDAPGHKSF---VPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-GVKH------LV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~---~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~i 94 (156)
.++.+++|||||...+ .......+.. ..-.++|++++.+. ....+.+...... +.|+ -=
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~~ 285 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLAG 285 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCCE
Confidence 5678999999998643 2233333333 34568999998764 2223333333322 2210 14
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
++++|+|.+
T Consensus 286 ~I~TKlDEt 294 (374)
T PRK14722 286 CILTKLDEA 294 (374)
T ss_pred EEEeccccC
Confidence 578999965
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.07 Score=40.55 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 30 KHFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 30 ~~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
++...-+-|||-- -.+....-++..|++|=|=|+.-++. .+....-..+. ..++ |+|+||+||+..
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLs-------srn~~~~~~~~--~k~r-iiVlNK~DLad~ 88 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLS-------SRNELFQDFLP--PKPR-IIVLNKMDLADP 88 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCc-------cccHHHHHhcC--CCce-EEEEecccccCc
Confidence 4455566788742 34455566678999999999987762 33333323332 4575 889999999753
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.089 Score=43.07 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.++||||||....... ...... ....++|++++... ..+.+.+......+ + .-+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~--------~Dl~eii~~f~~~~-~-~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF--------SDLDEVVRRFAHAK-P-QGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh--------hHHHHHHHHHHhhC-C-eEEEEecCc
Confidence 4578999999997533211 111112 23567888887643 34445555444433 3 467999999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 496 Et 497 (559)
T PRK12727 496 ET 497 (559)
T ss_pred Cc
Confidence 64
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.086 Score=41.93 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.+..+.++||||.... ...+...++ ...-.+||+|++.+. ....+........++. =++++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~--glIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYR--RILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCC--EEEEE
Confidence 4678999999997532 222222222 123578999998764 3444555555455655 45899
Q ss_pred CCCCC
Q psy10355 99 KMDDP 103 (156)
Q Consensus 99 K~Dl~ 103 (156)
|+|-+
T Consensus 368 KLDEt 372 (432)
T PRK12724 368 KLDEA 372 (432)
T ss_pred cccCC
Confidence 99964
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.08 Score=41.91 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCcCh----HHHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+..+.|+||||.... .......+. ..+.++||+|++... ....+.+......++. =++++|+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~id--glI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHID--GIVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCC--EEEEEcccC
Confidence 468999999997442 222333332 356789999986542 3335555555555655 458999996
Q ss_pred CC
Q psy10355 103 PT 104 (156)
Q Consensus 103 ~~ 104 (156)
+.
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 53
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.078 Score=41.71 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCCcChH----HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFV----PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~----~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
++.+.|+||||..... ........ ..+.+++|+++.... .+....+......++. -+++||+|.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~--glI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPID--GFIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCC--EEEEEcccC
Confidence 5689999999985432 22222222 346667788764321 2222333333333444 568999996
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 5
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=36.26 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl 102 (156)
.+.+.++|||+..... +...+..+|.+|++++++... .......+..+...+ .+.+-+++||++.
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSS-------IEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHH-------HHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHH-------HHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 3889999999875544 666778999999999985422 133344445555555 2235789999984
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.051 Score=43.85 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=42.8
Q ss_pred CCCcEEEEEeCCCCCC-----cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPT-----VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+| ++||++|.|... ..+....++.+++.++.+|-.+| ...|.||++...|++.|
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG------AsL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG------ASLIYTSVKEEKNLDLL 255 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC------CeEEEeeccccccHHHH
Confidence 567 999999999532 23556678899999999987775 47788999998887654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=39.57 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=39.2
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhh------hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGG------TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINK 99 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~------~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK 99 (156)
.++..++|+||.|-+.-....... .-..|-+|+|+|++-|. ..+....... ..++. -++++|
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---------aae~Qa~aFk~~vdvg--~vIlTK 249 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---------AAEAQARAFKETVDVG--AVILTK 249 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---------hHHHHHHHHHHhhccc--eEEEEe
Confidence 366889999999965432221111 23468999999998764 2222322222 23444 457999
Q ss_pred CC
Q psy10355 100 MD 101 (156)
Q Consensus 100 ~D 101 (156)
+|
T Consensus 250 lD 251 (483)
T KOG0780|consen 250 LD 251 (483)
T ss_pred cc
Confidence 99
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.4 Score=35.00 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~NK~D 101 (156)
+++.+.|+||||... .....++..+|.+|+.+.++...+ .........+.... ..+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~----~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDI----DEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHH----HHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 468899999999764 445677888999988877644221 00011111111111 23566 578999987
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.31 Score=38.80 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
..+.+.|+||+|-...-.. .+...-+.|=+++|+|+.-|. +......... ..++. =++++|+
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---------dA~~~A~aF~e~l~it--GvIlTKl 249 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---------DAVNTAKAFNEALGIT--GVILTKL 249 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---------HHHHHHHHHhhhcCCc--eEEEEcc
Confidence 4468999999996544222 223334578899999998863 2333333333 23444 4589999
Q ss_pred CC
Q psy10355 101 DD 102 (156)
Q Consensus 101 Dl 102 (156)
|=
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 93
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.28 Score=38.71 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhhhc--CC-EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGTAQ--AD-LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~~~--~d-~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.++.+.++||||..... ......+.. .+ -.+||+|++.+. ....+.+......+.. =++++|.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~--~~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYK--TVIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCC--EEEEEec
Confidence 56789999999975422 223333332 23 588999998764 3334444444334444 4589999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-+
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 965
|
|
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.33 Score=36.12 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
..+.++|+|||.... ..........+|++|+|+.+..-. .......+..+...+.+-+=+|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETR-------LHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCC-------HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 347799999997643 233555567889999999875533 2344555666666677744556664
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.11 Score=33.49 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=16.9
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
++||+|+.. ....++.++++. .+.+++|+||..
T Consensus 1 AaNK~D~~~---a~~ni~kl~~~~------------~~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPA---ADENIEKLKEKY------------PDEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHHHH------------TT-EEEEE-HHH
T ss_pred CCccccccc---cHhHHHHHHHhC------------CCCceeeccHHH
Confidence 689999743 223344444322 245889999874
|
; PDB: 1WXQ_A. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.48 Score=36.48 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCcCh----HHHHH---hhhhcCCE-----EEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMI---GGTAQADL-----AVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~---~~~~~~d~-----~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 94 (156)
.++.+.|+||+|-... ..... +.+...+. +++++|++.|. +.....+.... .++. -
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq---------nal~QAk~F~eav~l~--G 288 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ---------NALSQAKIFNEAVGLD--G 288 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh---------hHHHHHHHHHHhcCCc--e
Confidence 4578999999995432 22222 22222233 78888998873 34444444443 4555 4
Q ss_pred EEEeCCCC
Q psy10355 95 VLINKMDD 102 (156)
Q Consensus 95 vv~NK~Dl 102 (156)
++++|+|-
T Consensus 289 iIlTKlDg 296 (340)
T COG0552 289 IILTKLDG 296 (340)
T ss_pred EEEEeccc
Confidence 58999994
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.39 Score=38.36 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCcChH----HHHHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNMIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..+.|+||||..... ......+. ...-+.+|++++.+. ....+.+......+.. -+++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~--~vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLD--GLIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCC--EEEEecc
Confidence 35789999999985432 22223323 234678889987653 2334444444444443 4689999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 964
|
|
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.42 Score=37.47 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=42.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
++.+.+.++|||..-.....+...+..+|.+++|+.+..-. .......+......+++.+-++.|+.+.
T Consensus 213 ~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s-------~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 213 WPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIA-------LIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred hccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhH-------HHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 45688999999875333223444555689988888664321 1223334444445677744579999874
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.43 Score=35.33 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~D 101 (156)
+.+.+.|+||||..... ....++..+|.+|+++.++.... ....+..+.+... ...+++...+++|+++
T Consensus 114 ~~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l----~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~ 183 (267)
T cd02032 114 EEYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSI----FAANRIAAAVREKAKTYKVRLAGLIANRTD 183 (267)
T ss_pred ccCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccH----HHHHHHHHHHHHHhhccCCceEEEEEeCCC
Confidence 45789999999864321 23345788999999988754321 0011222222222 1234543346899998
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.56 Score=33.51 Aligned_cols=69 Identities=14% Similarity=-0.010 Sum_probs=38.8
Q ss_pred eCCeEEEEEeCCCCcChHHHH-HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc----CCCcEEEEEeCCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA----GVKHLVVLINKMD 101 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~-~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~NK~D 101 (156)
.+.+.+.++||||........ ..+.+.+|.+++++.++... .......+..+... +.+...++.||++
T Consensus 114 ~~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~s-------l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~ 186 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMA-------LYAANNICKGIRKYAKSGGVRLGGLICNSRN 186 (212)
T ss_pred ccCCCEEEEecCCCceecccccccccccCcEEEEEecccHHH-------HHHHHHHHHHHHHhCcccCCcEEEEEEeCCC
Confidence 356889999998865322211 11124789999999875422 11122233333322 3342458999999
Q ss_pred C
Q psy10355 102 D 102 (156)
Q Consensus 102 l 102 (156)
.
T Consensus 187 ~ 187 (212)
T cd02117 187 T 187 (212)
T ss_pred C
Confidence 4
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.5 Score=40.44 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+++||||+..... ........+|++++|+...... .......+..+...+.+..-+|+|++|.
T Consensus 654 ~~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVV-------VECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hhCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCcee-------HHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 34789999999985432 3334455789999998764322 2334455556666666645689999994
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.065 Score=34.31 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
...+.+.++++++|++..... ++. ..+...+........+ .+++.||.|+
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~---s~~--~~~~~~i~~~~k~dl~-~~~~~nk~dl 89 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRD---SAD--NKNVPEVLVGNKSDLP-ILVGGNRDVL 89 (124)
T ss_pred cccccCCCCEEEEEEEccCHH---HHH--HHhHHHHHhcCCCCCc-EEEEeechhh
Confidence 445667889998888876532 111 0122222222223355 6889999996
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.45 Score=36.38 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
..+.+.++|||+... ......+..+|.+++|++++... .......+..+...+.. +-+++|...
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~s-------l~~a~r~l~~l~~~~~~-~~lVv~~~~ 266 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRA-------VAAAARVCPELGRRNPD-LRLVVRGPA 266 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHH-------HHHHHHHHHHHhhhCCC-eEEEEeCCC
Confidence 347899999998854 34677889999999999775422 12233344444444433 555677654
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.67 Score=35.68 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcc-h-HHHHHHHHHcCCCcEEEEEeC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQ-T-REHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ivv~NK 99 (156)
....+|-|.|.-.-.+...... -..|+++-|||+..... ... . .....++... . ++++||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~------~~~~~~~~~~~Qia~A--D--~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE------GLDAIAELAEDQLAFA--D--VIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh------hHHHHHHHHHHHHHhC--c--EEEEec
Confidence 5678888999755433222222 23578999999976541 011 1 1122223222 3 779999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
.|++.. .....+++. ++.++ ...+++.+|.
T Consensus 155 ~Dlv~~----~~l~~l~~~----l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDA----EELEALEAR----LRKLN----PRARIIETSY 184 (323)
T ss_pred ccCCCH----HHHHHHHHH----HHHhC----CCCeEEEccc
Confidence 998742 223333333 34443 2457777776
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.44 Score=38.01 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred eCCeEEEEEeCCCCcChHHH---HHhhhh---cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPN---MIGGTA---QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~---~~~~~~---~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..+..+.++||+|....... ....+. ...-.+||+|++.+. ....+.+......++. =++++|+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~--~~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIH--GCIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCC--EEEEEee
Confidence 35678999999997653221 111122 234678999998643 2333444444445555 4589999
Q ss_pred CCCC
Q psy10355 101 DDPT 104 (156)
Q Consensus 101 Dl~~ 104 (156)
|.+.
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9653
|
|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.73 Score=33.45 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|||+. ....+..++..+|.+++++.++.
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~ 148 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADA 148 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH
Confidence 47999999995 34556778889999999998753
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.37 Score=38.11 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
...| +++|+||+|+... ...+. .+.. . + ...++++||+.+.|++.
T Consensus 216 t~KP-vI~VlNK~D~~~~---~~~l~----~i~~---~-~-----~~~vvpISA~~e~~l~~ 260 (396)
T PRK09602 216 ISKP-MVIAANKADLPPA---EENIE----RLKE---E-K-----YYIVVPTSAEAELALRR 260 (396)
T ss_pred cCCC-EEEEEEchhcccc---hHHHH----HHHh---c-C-----CCcEEEEcchhhhhHHH
Confidence 4567 8999999996421 11111 1211 1 2 24789999999999876
|
|
| >COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.1 Score=35.00 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDDPT 104 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl~~ 104 (156)
.+.+.++|.| ......+...+.++|.+++|++.+-.. .....+.+..+++.+ .++..+++||.+...
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~s-------lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLAS-------LRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHHH-------HHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 4779999999 566778889999999999999886433 234455555555532 333689999999653
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.98 Score=33.42 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.+.++|||+.... .....+..+|.++++++++..
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~ 148 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVS 148 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCch
Confidence 588999999987543 345567889999999988643
|
|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.65 Score=34.41 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
+++.+.|+||||...... +..++..+|.+|+++.+..... ....+....+.... ..+++..-++.|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl----~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSI----FAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhH----HHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 468899999998643221 3345778899999987744211 00012222222111 234552347899977
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=90.85 E-value=4.8 Score=29.74 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=42.9
Q ss_pred CCeEEEEEeCCCCcChH---HH---H---Hhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEE
Q psy10355 28 DRKHFTILDAPGHKSFV---PN---M---IGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~---~~---~---~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 96 (156)
..+.+.++|||...... .. + ...+. ..+.+++|+.+..-. .......+..+...+++..-+|
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~-------~~e~~r~~~~L~~~g~~v~gvV 195 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMS-------LYETERAIQELAKYGIDVDAVI 195 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhH-------HHHHHHHHHHHHHCCCCCCEEE
Confidence 46889999999753221 11 0 11222 245788888775433 2445566777777888755789
Q ss_pred EeCCCC
Q psy10355 97 INKMDD 102 (156)
Q Consensus 97 ~NK~Dl 102 (156)
+|++.-
T Consensus 196 ~N~v~~ 201 (254)
T cd00550 196 VNQLLP 201 (254)
T ss_pred EecCcc
Confidence 999974
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=90.85 E-value=3.9 Score=31.73 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCcChHHHHHhh-------hhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGG-------TAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~-------~~~~d~~ilvvD~~~ 65 (156)
....++.|.|.-+........ .-..|+++.|||+..
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 468899999987654333222 124588999999964
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.5 Score=31.54 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE--EEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV--VLINKMD 101 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--vv~NK~D 101 (156)
+.+.++|||+--. ..+..++..+|.+|+|..+.... ..+....+..+...+.+... +++|+++
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~s-------i~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTS-------ITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcch-------HHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 4799999998633 34456666669999998775432 13344556666666666333 8999998
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.78 Score=33.94 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~NK~D 101 (156)
+.+.+.++||||..... .+...+..+|.+++++.++.... ......+..+. ..+++..-+++|+++
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl-------~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~ 183 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDAL-------FAANRIAASVQEKAKNYDVRLAGIIGNRSD 183 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHH-------HHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Confidence 46889999999853211 11235678899998876643210 11222222222 234553457899998
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.2 Score=38.21 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc---CCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA---GVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~N 98 (156)
.++.++||||||.... ....... ....+-.++|+|++... ....+.+...... ++. =++++
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--------~~l~~i~~~f~~~~~~~i~--glIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--------DTLNEVVHAYRHGAGEDVD--GCIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--------HHHHHHHHHHhhcccCCCC--EEEEe
Confidence 4568999999994322 1111111 12345689999997642 2223343333321 344 45799
Q ss_pred CCCCCC
Q psy10355 99 KMDDPT 104 (156)
Q Consensus 99 K~Dl~~ 104 (156)
|+|-..
T Consensus 332 KLDEt~ 337 (767)
T PRK14723 332 KLDEAT 337 (767)
T ss_pred ccCCCC
Confidence 999653
|
|
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.4 Score=37.71 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=44.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|+|||....... .......+|++++|+...... .......+..+...+.+-+-+|+|+++.
T Consensus 640 ~yD~IIIDtPP~~~~~D-a~~la~~ad~~llVvr~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNT-------AKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred cCCEEEEeCCCccccch-HHHHHHhCCeEEEEEeCCCCC-------HHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 47899999998754422 233346789999998764432 1344555666666777745689999984
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.4 Score=34.98 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhhhhcC--CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGGTAQA--DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~~~~~--d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.++++||+|...+ ...+..++..+ .-+-||++++... ....+++......++. =++++|+|
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i~--~~I~TKlD 349 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPID--GLIFTKLD 349 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCcc--eeEEEccc
Confidence 4568999999998654 33344444333 2456788886532 4455666666666666 34799999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
.+.
T Consensus 350 ET~ 352 (407)
T COG1419 350 ETT 352 (407)
T ss_pred ccC
Confidence 764
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.66 Score=28.93 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|+.... .....+..+|.++++++++.
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCH
Confidence 67999999997543 34477788999999998854
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.2 Score=36.20 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred eCCeEEEEEeCCCCcChHHH---HHhhhhc---CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 27 TDRKHFTILDAPGHKSFVPN---MIGGTAQ---ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~---~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
..++.+.++||+|....... ....+.. ..-.++|+|++.+. ....+........+.. -+++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~--g~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLA--GCILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCC--EEEEeCC
Confidence 34567999999995433221 1111111 12378999997653 2333344444444444 4578999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|-.
T Consensus 402 Det 404 (484)
T PRK06995 402 DEA 404 (484)
T ss_pred CCc
Confidence 964
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.77 Score=41.36 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=38.2
Q ss_pred eEEEEEeCCCCcC--------hHHHHHhhh---------hcCCEEEEEEeCCCCccccccCC----CcchHHHHHHHH--
Q psy10355 30 KHFTILDAPGHKS--------FVPNMIGGT---------AQADLAVLVISARKGEFETGFDR----GGQTREHAMLAK-- 86 (156)
Q Consensus 30 ~~~~iiDtpG~~~--------~~~~~~~~~---------~~~d~~ilvvD~~~~~~~~~~~~----~~~~~~~~~~~~-- 86 (156)
.+-+++||+|..- ....|...+ +-.+++|+++|..+-.. ..-.. .......+..+.
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~-~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT-ADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999421 112222222 34799999999865331 00000 000111111111
Q ss_pred -HcCCCcEEEEEeCCCCC
Q psy10355 87 -TAGVKHLVVLINKMDDP 103 (156)
Q Consensus 87 -~~~~~~~ivv~NK~Dl~ 103 (156)
....| +-++++|+|+.
T Consensus 240 lg~~~P-VYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFP-VYLVLTKADLL 256 (1169)
T ss_pred hCCCCC-EEEEEecchhh
Confidence 13578 89999999976
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=2 Score=36.76 Aligned_cols=66 Identities=9% Similarity=0.061 Sum_probs=45.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.++|+|||...-. .......+.+|++++|+-...-. .......+..+...+.+-+=+|+|+++.
T Consensus 635 ~yD~ViiDtpP~~~v-~Da~~l~~~~d~~l~Vvr~~~t~-------~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 635 NYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNT-------LKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred cCCEEEEeCCCcccc-hHHHHHHHHCCeEEEEEeCCCCC-------HHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 478999999987543 34445568899999999775432 2334445566666777744589999984
|
|
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.8 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=28.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.+.|+|||+... ..+..++..+|.+|+++.+.
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 568899999999854 45777888999999999763
|
|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.4 Score=34.76 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+...+ .+..++.-+|.+|+.+.+.
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~ 267 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAE 267 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCc
Confidence 4588999999998654 5677888889988888664
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.3 Score=33.55 Aligned_cols=69 Identities=7% Similarity=0.041 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~D 101 (156)
+++.+.++||||.... .....++..||.+|++++++.... .......+.+..... .+.+..-+++|+.+
T Consensus 114 ~~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl----~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 114 YEYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDAL----FAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred ccCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHH----HHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 3578999999986321 122345678999999988754321 001112222222221 23443447899988
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=88.08 E-value=3.6 Score=28.57 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCcChHHH-----HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPN-----MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~-----~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK~Dl 102 (156)
+....|+-+.|..+-... .....-..+.+|.|+|+..... .......+ .++ ..-. ++++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~------~~~~~~~~~~Qi---~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE------LENIPELLREQI---AFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG------HTTHCHHHHHHH---CT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc------cccchhhhhhcc---hhcC-EEEEecccc
Confidence 346788888886544333 1111233588999999955220 01111111 222 2222 779999997
Q ss_pred C
Q psy10355 103 P 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 154 ~ 154 (178)
T PF02492_consen 154 V 154 (178)
T ss_dssp H
T ss_pred C
Confidence 6
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.059 Score=39.52 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=53.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHH---HHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREH---AMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~---~~~~~~- 87 (156)
|--|.++..++|...+..|-++|..|+..-.+.|+..+.+.-.+++++..++.. +-..+. ....++. ++.+..
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYD-QvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYD-QVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHccchhhHHHHHHHHHHHhcc
Confidence 334667778888889999999999999887777777777766666655443211 000000 1112221 111111
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
.+-+ +|+.+||.|+.
T Consensus 262 PWF~nss-VIlFLNKkDlL 279 (359)
T KOG0085|consen 262 PWFQNSS-VILFLNKKDLL 279 (359)
T ss_pred ccccCCc-eEEEechhhhh
Confidence 2445 89999999975
|
|
| >KOG3022|consensus | Back alignment and domain information |
|---|
Probab=87.71 E-value=1 Score=33.93 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEeCCeEEEEEeCCC-CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 25 FETDRKHFTILDAPG-HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 25 ~~~~~~~~~iiDtpG-~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
..|++-.+.++|||- ..+-.-....+++.++++|+|.-+..-. ..+....+...++.++| ++=++
T Consensus 152 vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vA-------l~Dv~K~i~fc~K~~I~-ilGvV 217 (300)
T KOG3022|consen 152 VDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVA-------LQDVRKEIDFCRKAGIP-ILGVV 217 (300)
T ss_pred CCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhh-------hHHHHhhhhhhhhcCCc-eEEEE
Confidence 356678899999984 4444445566667779988887664322 23445566777888888 44433
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=4.9 Score=30.86 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCcChHHHHHhhh--------hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGT--------AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~--------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
....++-|.|.-+-........ -..++++.|+|+..... .. ........++.. .. ++++||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~--~~---~~~~~~~~Qi~~--AD--~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE--QM---NQFTIAQSQVGY--AD--RILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhh--hc---cccHHHHHHHHh--CC--EEEEeccc
Confidence 4578899999866433322221 13488999999975431 11 111111222222 23 67999999
Q ss_pred CCC
Q psy10355 102 DPT 104 (156)
Q Consensus 102 l~~ 104 (156)
+..
T Consensus 162 l~~ 164 (318)
T PRK11537 162 VAG 164 (318)
T ss_pred cCC
Confidence 864
|
|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=87.16 E-value=3.4 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.+.++|||..... ......+..+|.+|+|+.+...
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~ 184 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRT 184 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCC
Confidence 5888888876542 2233334567888888877553
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=3.4 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+.. ...+..++.-+|.+|+.+.+.
T Consensus 233 ~~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~ 267 (388)
T PRK13705 233 HDYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAE 267 (388)
T ss_pred ccCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCc
Confidence 45789999999874 345677778889998888664
|
|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=86.32 E-value=2.6 Score=33.13 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|||+... ..+..++..+|.+|+++.+..
T Consensus 233 ~~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~ 268 (387)
T TIGR03453 233 DDYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQM 268 (387)
T ss_pred hcCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCch
Confidence 457899999999753 457778888999998887643
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=86.11 E-value=3.7 Score=29.75 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=31.7
Q ss_pred ceeeeeeEEEEe---CCeEEEEEeCCCCcCh------HHHHHhhhhc--CCEEEEEEeCCC
Q psy10355 16 KTVEVGRAYFET---DRKHFTILDAPGHKSF------VPNMIGGTAQ--ADLAVLVISARK 65 (156)
Q Consensus 16 ~t~~~~~~~~~~---~~~~~~iiDtpG~~~~------~~~~~~~~~~--~d~~ilvvD~~~ 65 (156)
.|.++-.+.... .+..+.++||||..+. ......++.. ++++|+.++...
T Consensus 43 ~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 43 TTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 344444443333 3678999999998542 2334445544 899999988754
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=85.12 E-value=3.1 Score=32.71 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=38.5
Q ss_pred cCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 14 KGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+..|+++..+.+...+ ..+.++|.||... +.......++.+|++++|+|+.+
T Consensus 34 pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 34 PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4556677776666544 3689999999754 34466778899999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=5 Score=31.92 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.++|+|||+... ..+..++.-+|.+|+.+.+..
T Consensus 250 ~~yD~IiIDtpP~l~--~~t~~al~aAd~viiPv~p~~ 285 (405)
T PRK13869 250 DDYDVVVIDCPPQLG--FLTLSGLCAATSMVITVHPQM 285 (405)
T ss_pred ccCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcH
Confidence 468899999999854 457778888999999887643
|
|
| >PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=7.1 Score=32.35 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (156)
.+...++..++..|+| +++++||.|.-. .... +.+++++++.|
T Consensus 359 ~NL~RHIenvr~FGvP-vVVAINKFd~DT----e~Ei----~~I~~~c~e~G 401 (557)
T PRK13505 359 ANLERHIENIRKFGVP-VVVAINKFVTDT----DAEI----AALKELCEELG 401 (557)
T ss_pred HHHHHHHHHHHHcCCC-EEEEEeCCCCCC----HHHH----HHHHHHHHHcC
Confidence 3456688888889999 899999999631 1122 33556666654
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=82.23 E-value=6.4 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=30.9
Q ss_pred cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 41 KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 41 ~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
..........+..+|++|++.|.-.. ......-..+...++| ++.
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH---------~~~~~vk~~akk~~ip-~~~ 80 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSH---------NAMWKVKKAAKKYGIP-IIY 80 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcCh---------HHHHHHHHHHHHcCCc-EEE
Confidence 33344577888999999999998663 2344455666777888 553
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=82.13 E-value=2 Score=31.84 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCCcCh------HHHHHhhhhcCC---EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 29 RKHFTILDAPGHKSF------VPNMIGGTAQAD---LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~------~~~~~~~~~~~d---~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
...+.++|+||+-++ .......++..+ +++-++|+.-.--...| ..-....+.-+.....|| |=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melph-VNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPH-VNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccc-hhhhhH
Confidence 467899999998543 344555565555 45556665322100000 011112223333456787 779999
Q ss_pred CCCCC
Q psy10355 100 MDDPT 104 (156)
Q Consensus 100 ~Dl~~ 104 (156)
+|+..
T Consensus 173 ~Dl~~ 177 (290)
T KOG1533|consen 173 ADLLK 177 (290)
T ss_pred hHHHH
Confidence 99754
|
|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=81.94 E-value=3.2 Score=29.76 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=35.7
Q ss_pred CCeEEEEEeCCCCcC--hHH--HHHhhhh-cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKS--FVP--NMIGGTA-QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~--~~~--~~~~~~~-~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+.++|+||... +.. .....++ ...-+++|.+...+. .......+..+...+.+..-+++|+++-
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~-------i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGC-------INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcH-------HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 457899999998521 110 0111111 112367777764432 1223344444555676633578999984
|
|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=81.57 E-value=6.5 Score=28.89 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~ 65 (156)
+.+.+.|+||||....... ...++..+|.+|+++.++.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4678999999986532222 1122235899999998754
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=81.54 E-value=8.3 Score=31.13 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL 143 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 143 (156)
+..+..++..|.| +++++|-.+=. .....++.+++...+ ++|++|+++..
T Consensus 170 ervI~ELk~igKP-FvillNs~~P~-----s~et~~L~~eL~ekY---------~vpVlpvnc~~ 219 (492)
T PF09547_consen 170 ERVIEELKEIGKP-FVILLNSTKPY-----SEETQELAEELEEKY---------DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHhCCC-EEEEEeCCCCC-----CHHHHHHHHHHHHHh---------CCcEEEeehHH
Confidence 3456777788999 99999988721 223344555555432 57888888764
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=80.94 E-value=6.5 Score=26.67 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=5.0
Q ss_pred eEEEEEeCCC
Q psy10355 30 KHFTILDAPG 39 (156)
Q Consensus 30 ~~~~iiDtpG 39 (156)
+.+.++|+||
T Consensus 100 ~D~viid~~g 109 (166)
T TIGR00347 100 YDFVLVEGAG 109 (166)
T ss_pred CCEEEEEcCC
Confidence 4455555554
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.73 E-value=7.8 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCC
Q psy10355 30 KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 30 ~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
..+.|+|.||.-. +...-..-+|.+|+++.|||+.
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3589999999743 3445667789999999999986
|
|
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.57 E-value=4 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCeEEEEEeCCCCcChHHHH-HhhhhcCCEEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNM-IGGTAQADLAVLVISARK 65 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~-~~~~~~~d~~ilvvD~~~ 65 (156)
+++.+.|+||||........ ......+|.+|+++.++.
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~ 150 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCch
Confidence 45789999999865322211 111257899999887744
|
|
| >PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 | Back alignment and domain information |
|---|
Probab=80.42 E-value=6 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 46 NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 46 ~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.-...++.||++|.++|..+. ...+.-.+-++...|+| ++++.+...
T Consensus 54 ~d~~~i~~~D~via~l~~~~~--------d~Gt~~ElG~A~algkp-v~~~~~d~~ 100 (113)
T PF05014_consen 54 RDLEGIRECDIVIANLDGFRP--------DSGTAFELGYAYALGKP-VILLTEDDR 100 (113)
T ss_dssp HHHHHHHHSSEEEEEECSSS----------HHHHHHHHHHHHTTSE-EEEEECCCC
T ss_pred HHHHHHHHCCEEEEECCCCCC--------CCcHHHHHHHHHHCCCE-EEEEEcCCc
Confidence 345677899999999998442 24566667778888988 676666555
|
4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 156 | ||||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 4e-64 | ||
| 1r5b_A | 467 | Crystal Structure Analysis Of Sup35 Length = 467 | 1e-50 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 4e-33 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 5e-33 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 3e-32 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 4e-32 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 4e-32 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 8e-32 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 3e-31 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 4e-26 | ||
| 1mj1_A | 405 | Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB | 4e-16 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 6e-16 | ||
| 2y0u_Z | 405 | The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou | 6e-16 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 6e-16 | ||
| 2c78_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 6e-16 | ||
| 2y0y_Z | 405 | The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo | 6e-16 | ||
| 1ttt_A | 405 | Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com | 6e-16 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 6e-16 | ||
| 2wrn_Z | 406 | The Crystal Structure Of The 70s Ribosome Bound To | 6e-16 | ||
| 4abr_Z | 405 | Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir | 6e-16 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 6e-16 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-15 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 3e-14 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 9e-14 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 1e-13 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 2e-13 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 2e-13 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 2e-13 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 2e-13 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 2e-13 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 3e-13 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 3e-13 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 4e-13 | ||
| 2hdn_B | 335 | Trypsin-Modified Elongation Factor Tu In Complex Wi | 6e-13 | ||
| 2hcj_B | 335 | "trypsin-Modified Elongation Factor Tu In Complex W | 8e-13 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 6e-07 | ||
| 2pmd_A | 415 | The Structures Of Aif2gamma Subunit From The Archae | 1e-06 | ||
| 3pen_A | 403 | Structure Of Archaeal Initiation Factor Aif2gamma S | 1e-06 | ||
| 2aho_A | 414 | Structure Of The Archaeal Initiation Factor Eif2 Al | 1e-06 | ||
| 3sjz_A | 409 | The Structure Of Aif2gamma Subunit Delta 41-45 From | 1e-06 | ||
| 1s0u_A | 408 | Eif2gamma Apo Length = 408 | 2e-06 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 6e-06 | ||
| 1kk3_A | 410 | Structure Of The Wild-Type Large Gamma Subunit Of I | 1e-05 | ||
| 1kjz_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 1e-05 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 2e-05 | ||
| 2d74_A | 419 | Crystal Structure Of Translation Initiation Factor | 3e-05 | ||
| 1kk0_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 5e-04 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 8e-04 |
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 | Back alignment and structure |
|
| >pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 | Back alignment and structure |
|
| >pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335 | Back alignment and structure |
|
| >pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415 | Back alignment and structure |
|
| >pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403 | Back alignment and structure |
|
| >pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414 | Back alignment and structure |
|
| >pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409 | Back alignment and structure |
|
| >pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 | Back alignment and structure |
|
| >pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419 | Back alignment and structure |
|
| >pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 7e-84
Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE+G
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
FD GQT+EH +LA + G+ +L++ +NKMD V WS+ R+ E K K+LPYL +GF
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFF-E 209
Query: 132 KDLSFMPCSG 141
+++++P SG
Sbjct: 210 DNINWVPISG 219
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 9e-83
Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
RE+G TV + ++F T R +FTI+DAPGH+ FVPN I G +QAD+A+L + FE+G
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131
FD GQT+EH +LA + G+ +L++ +NKMD V WS+ R+ E K K+LPYL +GF
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFF-E 343
Query: 132 KDLSFMPCSG 141
+++++P SG
Sbjct: 344 DNINWVPISG 353
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 1e-79
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++R +G T++V FE+D+K + I DAPGH+ F+ MI G + AD AVLV+ + +
Sbjct: 233 TEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKL 126
FE GF GQTREHA L + G+ +VV +NK+D + WSE R+ E K+ + +L K +
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLD--LMSWSEDRFQEIKNIVSDFLIKMV 350
Query: 127 GFNAAKDLSFMPCSG 141
GF ++ F+P S
Sbjct: 351 GFK-TSNVHFVPISA 364
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 3e-77
Identities = 85/135 (62%), Positives = 111/135 (82%), Gaps = 1/135 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+GE
Sbjct: 99 TSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE 158
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL- 126
FE GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++
Sbjct: 159 FEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 218
Query: 127 GFNAAKDLSFMPCSG 141
G+N+ D+ +MP S
Sbjct: 219 GYNSKTDVKYMPVSA 233
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 6e-76
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+++RE+G T+ + FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SA+KGE
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
+E G GQTREH +LAKT G+ L+V +NKMD + E RY E D++ +++ G
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 128 FNAAKDLSFMPCSG 141
FN + F+P
Sbjct: 182 FN-TNKVRFVPVVA 194
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 8e-64
Identities = 63/134 (47%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T+++ FET + T++DAPGH+ F+ NMI GT+QAD A+L+I+ GE
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
FE G + GQTREHA+LA T GV+ L+V +NKMD +V W E+R+ E + ++KK+G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKVG 180
Query: 128 FNAAKDLSFMPCSG 141
+N K + F+P SG
Sbjct: 181 YN-PKTVPFVPISG 193
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-37
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L+ +RE+G T++V YF T ++ F I D PGH+ + NM G + DLA++++ AR G
Sbjct: 82 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 141
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG 127
QTR H+ +A G+KH+VV INKMD + E + K L + + +
Sbjct: 142 QT-------QTRRHSYIASLLGIKHIVVAINKMD--LNGFDERVFESIKADYLKFAEGIA 192
Query: 128 FNAAKDLSFMPCSG 141
F ++F+P S
Sbjct: 193 FKPT-TMAFVPMSA 205
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 5e-25
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 8 LRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE 67
L + +++G T+++G + F+ + T++DAPGH + ++ DLA++V+ A++G
Sbjct: 51 LPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP 110
Query: 68 FETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QT EH ++ + +VV+ K D
Sbjct: 111 KT-------QTGEHMLILDHFNIPIIVVI-TKSD 136
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-22
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGF 72
+KG + ++ + + ++ +DA + + ++I +D+AVL I
Sbjct: 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPP--------- 93
Query: 73 DRGG---QTREHAMLAKTAGVKHLVVLINKMD 101
G T E + G KH ++ + + D
Sbjct: 94 Q--GLDAHTGECIIALDLLGFKHGIIALTRSD 123
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 8e-21
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
+ +G T+ ++T +H+ +D PGH +V NMI G AQ D A+LV++A G
Sbjct: 341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-- 398
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +L + GV +++V +NK D
Sbjct: 399 -----QTREHILLGRQVGVPYIIVFLNKCD 423
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-21
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
R +G T+ + T +H+ D PGH +V NMI GTA D +LV++A G
Sbjct: 48 RARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-- 105
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV+H+VV +NK D
Sbjct: 106 -----QTREHLLLARQIGVEHVVVYVNKAD 130
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-20
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETG 71
R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 57 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-- 114
Query: 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH +LA+ GV ++VV +NK+D
Sbjct: 115 -----QTREHILLARQVGVPYIVVFMNKVD 139
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-18
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 12 REKGKTVEVGRAYFETDRK-HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFET 70
+ + + E + +DAPGH+ + M+ G A D A+LV++A + +
Sbjct: 56 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 115
Query: 71 GFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101
QTREH + GVK+L+++ NK+D
Sbjct: 116 ------QTREHFVALGIIGVKNLIIVQNKVD 140
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-18
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90
+ +D+PGH++ + M+ G + D A+LVI+A + + QT+EH M + G+
Sbjct: 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILGI 135
Query: 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146
++++ NK+D + E + E ++I ++K A++ +P S E N
Sbjct: 136 DKIIIVQNKID----LVDEKQAEENYEQIKEFVKG---TIAENAPIIPISAHHEAN 184
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-17
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90
+ +DAPGH++ + M+ G + D A+LVI+A + QTREH M + G
Sbjct: 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQ 137
Query: 91 KHLVVLINKMD 101
K++++ NK++
Sbjct: 138 KNIIIAQNKIE 148
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-09
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFD 73
G T +G + K T LD PGH++F M AQ D+ +LV++A G
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFT-TMRARGAQVTDIVILVVAADDGVMP---- 94
Query: 74 RGGQTREHAMLAKTAGVKHLVVLINKMDDPT 104
QT E AK A V ++V INKMD P
Sbjct: 95 ---QTVEAINHAKAANVP-IIVAINKMDKPE 121
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-07
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 23 AY-FETDRKHFTILDAPGHKSFVPNMIGGTAQA-DLAVLVISARKGEFETGFDRG--GQT 78
AY ET+ T LD PGH +F +M AQA D+ VLV++A D G QT
Sbjct: 43 AYHVETENGMITFLDTPGHAAFT-SMRARGAQATDIVVLVVAA---------DDGVMPQT 92
Query: 79 RE---HAMLAKTAGVKHLVVLINKMDDPT 104
E H AK A V +VV +NK+D P
Sbjct: 93 IEAIQH---AKAAQVP-VVVAVNKIDKPE 117
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-07
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIG-GTAQADLAVLVISARKGEFETG 71
E + + +D PGH++F + G A ADLA+L++
Sbjct: 53 EGICGDFLKKFSIRETLPGLFFIDTPGHEAFT-TLRKRGGALADLAILIVDI-------- 103
Query: 72 FDRG--GQTREHAMLAKTAGVKHLVVLINKMDDP 103
+ G QT+E + + VV NK+D
Sbjct: 104 -NEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 26/82 (31%)
Query: 33 TILDAPGHKSFVPNMIGGT------AQA-DLAVLVISARKGEFETGFDRG--GQTREHAM 83
T LD PGH +F + Q D+ +LV++A D G QT E
Sbjct: 55 TFLDTPGHAAF-------SAMRARGTQVTDIVILVVAA---------DDGVMKQTVESIQ 98
Query: 84 LAKTAGVKHLVVLINKMDDPTV 105
AK A V +V+ INK D
Sbjct: 99 HAKDAHVP-IVLAINKCDKAEA 119
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.96 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.93 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.92 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.92 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.92 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.91 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.89 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.89 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.88 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.88 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.87 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.87 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.85 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.85 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.84 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.84 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.83 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.83 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.83 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.83 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.77 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.76 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.76 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.76 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.74 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.72 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.72 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.72 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.72 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.72 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.72 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.71 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.71 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.71 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.71 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.71 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.71 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.7 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.7 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.7 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.7 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.7 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.7 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.7 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.7 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.7 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.7 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.69 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.69 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.69 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.69 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.68 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.68 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.68 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.68 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.68 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.68 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.68 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.68 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.67 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.67 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.67 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.67 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.67 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.67 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.67 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.67 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.67 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.67 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.67 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.67 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.67 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.66 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.66 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.66 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.66 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.66 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.66 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.66 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.66 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.66 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.66 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.65 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.65 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.65 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.65 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.65 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.65 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.64 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.64 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.64 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.64 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.64 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.64 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.64 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.64 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.64 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.63 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.63 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.63 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.63 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.63 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.63 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.63 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.63 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.62 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.62 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.62 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.62 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.62 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.61 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.61 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.61 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.61 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.61 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.61 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.61 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.6 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.6 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.6 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.6 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.6 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.6 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.59 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.59 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.59 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.59 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.59 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.59 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.59 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.58 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.58 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.58 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.58 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.58 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.58 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.58 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.57 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.57 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.57 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.57 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.56 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.56 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.56 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.55 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.55 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.32 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.54 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.54 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.52 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.51 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.51 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.5 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.49 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.49 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.48 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.47 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.46 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.46 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.45 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.44 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.44 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.43 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.43 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.42 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.42 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.41 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.4 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.37 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.36 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.35 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.35 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.34 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.33 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.32 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.32 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.28 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.28 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.27 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.19 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.16 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.15 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.15 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.15 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.14 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.13 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.13 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.13 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.11 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.1 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.1 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.07 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.04 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.02 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.01 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.97 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.9 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.89 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.87 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.82 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.82 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.79 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.66 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.57 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.53 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.53 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.45 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.43 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.39 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.37 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.21 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.07 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.98 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.82 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.82 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 97.8 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.7 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.7 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.63 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.26 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.14 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 96.81 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 96.57 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 96.54 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 96.25 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 96.08 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.96 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 95.96 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.77 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 95.7 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.64 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 95.52 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 95.38 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 95.35 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.21 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.16 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 95.1 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 95.0 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.98 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 94.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 94.74 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 94.71 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 94.55 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 94.22 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.14 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 93.27 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 93.08 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 92.76 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 92.45 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 91.92 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 91.82 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 90.87 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 90.23 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 90.1 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 89.15 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 88.64 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 85.91 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 85.58 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 84.12 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 81.55 |
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=189.30 Aligned_cols=148 Identities=74% Similarity=1.157 Sum_probs=134.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+.+++++++|||||||++|.+.+..+++.+|++|+|+|++++.++.+|+...++.+++..
T Consensus 70 ~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~ 149 (439)
T 3j2k_7 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML 149 (439)
T ss_pred hccchhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999877778777899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++|++|+++||+|+...++.+..++++.+++..+++.+++.+..+++++++||++|.|++++.+
T Consensus 150 ~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99899988899999999977777777888889999999998888654467999999999999998764
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=179.02 Aligned_cols=148 Identities=58% Similarity=0.967 Sum_probs=102.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+.++++.++|||||||++|.+.+..+++.+|++|+|+|++++.++.+|+...++.+++..
T Consensus 96 ~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~ 175 (467)
T 1r5b_A 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 175 (467)
T ss_dssp -----------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH
T ss_pred cccchhhhhcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999998767788877899999988
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...++|++|+++||+|+...++++..++.+.+++..+++.. ++.+..+++++++||++|.|++++..
T Consensus 176 ~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 176 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 888899878999999998766666667778888888888877 76411146899999999999998764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=172.01 Aligned_cols=147 Identities=43% Similarity=0.686 Sum_probs=113.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+.+.++.++|||||||++|...+..+++.+|++|+|+|++++.++..+....++.+++..
T Consensus 59 ~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~ 138 (435)
T 1jny_A 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL 138 (435)
T ss_dssp HHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH
T ss_pred hccChHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999987443333345788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++++++||+|+...++++..++.+.+++..+++..++.+. .++++++||++|+|+.++..
T Consensus 139 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 139 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN-KVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCT-TCEEEECBTTTTBTTTBCCS
T ss_pred HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcC-CceEEEeecccCcccccccc
Confidence 88888876899999999876545556677788888888888887442 57999999999999987654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=170.53 Aligned_cols=145 Identities=41% Similarity=0.748 Sum_probs=114.0
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.+..|+++|+|++.....+...+..+.|||||||++|...+..+++++|++|+|+|++++.++..+....++.+++..
T Consensus 86 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~ 165 (483)
T 3p26_A 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL 165 (483)
T ss_dssp ---------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHH
T ss_pred hccchhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999988655555556788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+|+||+|+.. +....++++++++..+++..++... .++++++||++|+|++++..
T Consensus 166 ~~~~~~~~iIvviNK~Dl~~--~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 166 ASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED-NINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp HHHTTCCCEEEEEECGGGGT--TCHHHHHHHHHHHHHHHHHHTCCGG-GEEEEECCSSSCTTSSSSCC
T ss_pred HHHcCCCcEEEEEECcCccc--chHHHHHHHHHHHHHHHHHcCCCcc-cceEEEEeeecCCCccccCc
Confidence 88888776999999999753 3456678888888888888887532 57899999999999998764
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=171.66 Aligned_cols=144 Identities=43% Similarity=0.723 Sum_probs=121.8
Q ss_pred cccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 6 LWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
|..++|+++|+|++.....+..+++.++|||||||++|...+..++..+|++|+|+|++++.++.+|+...++.+++..+
T Consensus 61 d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~ 140 (458)
T 1f60_A 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA 140 (458)
T ss_dssp HHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH
T ss_pred ccchhHHhcCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999876455665556888888888
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++|++|+++||+|+. .++...++++.+++..+++..++.+. +++++++||++|.|++++..
T Consensus 141 ~~~~v~~iivviNK~Dl~--~~~~~~~~~i~~~~~~~l~~~g~~~~-~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 141 FTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFIKKVGYNPK-TVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp HHTTCCEEEEEEECGGGG--TTCHHHHHHHHHHHHHHHHHHTCCGG-GCCEEECCTTTCBTTTBCCS
T ss_pred HHcCCCeEEEEEEccccc--cCCHHHHHHHHHHHHHHHHHcCCCcc-CceEEEeecccCcCcccccc
Confidence 888888789999999976 23445567777888888888877432 47999999999999988754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=171.95 Aligned_cols=145 Identities=41% Similarity=0.748 Sum_probs=125.6
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.++.|+++|+|++.....+.+.+++++|||||||++|...+..+++.+|++|+|+|++.+.++.+|....++.+++..
T Consensus 220 ~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~ 299 (611)
T 3izq_1 220 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL 299 (611)
T ss_dssp HHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHH
T ss_pred eccchhhhhCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999987656666667889999888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+|+||+|+.. +....++++.+++..++...++... .++++++||++|.|++++..
T Consensus 300 ~~~lgi~~iIVVvNKiDl~~--~~~~~~~ei~~~l~~~l~~~g~~~~-~~~~i~vSA~tG~gI~el~~ 364 (611)
T 3izq_1 300 ASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED-NINWVPISGFSGEGVYKIEY 364 (611)
T ss_dssp HHTTTCCEEEEEEECTTTTT--TCHHHHHHHHHHHHHHHHHHTCCGG-GCEEEECCTTTCTTTSSCTT
T ss_pred HHHcCCCeEEEEEecccccc--hhHHHHHHHHHHHHHHHHhhccccc-CccEEeeecccCCCccccCc
Confidence 88888887899999999763 3455677788888888888887542 57999999999999998753
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=160.89 Aligned_cols=138 Identities=34% Similarity=0.557 Sum_probs=110.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+..++..+.|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 79 ~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-------~~qt~~~l~~ 151 (434)
T 1zun_B 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-------QTQTRRHSYI 151 (434)
T ss_dssp HHHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred hccChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999886 3677788777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+++||+|+... .+..++++.+++..+++.+++.. ..++++++||++|.|++++.+
T Consensus 152 ~~~~~~~~iIvviNK~Dl~~~--~~~~~~~i~~~~~~~~~~~g~~~-~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 152 ASLLGIKHIVVAINKMDLNGF--DERVFESIKADYLKFAEGIAFKP-TTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHTTCCEEEEEEECTTTTTS--CHHHHHHHHHHHHHHHHTTTCCC-SEEEEEECCTTTCTTTSSCCT
T ss_pred HHHcCCCeEEEEEEcCcCCcc--cHHHHHHHHHHHHHHHHHhCCCc-cCceEEEEeccCCCCcccccc
Confidence 777888768999999998642 34445666777888887776311 246899999999999998654
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=174.85 Aligned_cols=145 Identities=39% Similarity=0.666 Sum_probs=89.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|.+++|+++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|+|++.+.++.++....++.+++.
T Consensus 229 ~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~ 308 (592)
T 3mca_A 229 LLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY 308 (592)
T ss_dssp ------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH
T ss_pred hhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999998766666655688999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH-HHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL-KKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...++|++|+|+||+|+.. +....+..+.+++..++ +..++... +++++++||++|.|+.++.
T Consensus 309 ~~~~lgip~iIvviNKiDl~~--~~~~~~~~i~~el~~~l~~~~g~~~~-~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 309 LLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTS-NVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp HHHHSSCCCEEEEEECGGGGT--TCHHHHHHHHHHHHHHHTTTSCCCGG-GEEEEEECSSSCSSSCSCC
T ss_pred HHHHcCCCeEEEEEecccccc--ccHHHHHHHHHHHHHHHHHhhCCCcc-ceEEEEEecccCccccccc
Confidence 999899987899999999753 34556777778888887 77777432 5689999999999998654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-23 Score=166.21 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=81.7
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
++|+.+.|++||+|+..+...+.|+++.|+|+|||||.+|...+.++++-+|++|+|||+.+|. ..+++..|+
T Consensus 74 ~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-------~~qT~~v~~ 146 (548)
T 3vqt_A 74 TSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-------EAQTRKLMD 146 (548)
T ss_dssp --------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-------CHHHHHHHH
T ss_pred ccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-------ccccHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHH
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKD 117 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 117 (156)
.+...++| .++++||||+..++... .++++++
T Consensus 147 ~a~~~~lp-~i~fINK~Dr~~ad~~~-~~~~i~~ 178 (548)
T 3vqt_A 147 VCRMRATP-VMTFVNKMDREALHPLD-VMADIEQ 178 (548)
T ss_dssp HHHHTTCC-EEEEEECTTSCCCCHHH-HHHHHHH
T ss_pred HHHHhCCc-eEEEEecccchhcchhH-hhhhhhh
Confidence 99999999 69999999997765433 2444443
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=155.80 Aligned_cols=131 Identities=31% Similarity=0.480 Sum_probs=110.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+...+..++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~~~l~~ 122 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-------MPQTREHILL 122 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-------CHHHHHHHHH
T ss_pred ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999999886 3677888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...++|++++++||+|+.. ....++.+.+++..+++..++... .++++++||++|.|
T Consensus 123 ~~~~~ip~iivviNK~Dl~~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 123 ARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGD-EVPVIRGSALLALE 180 (405)
T ss_dssp HHHTTCCCEEEEEECGGGCC---CHHHHHHHHHHHHHHHHHTTSCTT-TSCEEECCHHHHHH
T ss_pred HHHcCCCEEEEEEECccccC---cHHHHHHHHHHHHHHHHHhccccc-CCCEEEccHHHhhh
Confidence 88889987789999999863 233355566677778888776432 57999999999987
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=160.11 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=99.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++..+..+.++++.+++||||||++|...+..++..+|++++|+|++++. ..++.+++..
T Consensus 48 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~ 120 (482)
T 1wb1_A 48 HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP-------KTQTGEHMLI 120 (482)
T ss_dssp ----------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCc-------cHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999887 4788888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| .++++||+|+.. ...+++..+++..+++.. ++. +.+++++||++|+|+++|.
T Consensus 121 ~~~~~ip-~IvviNK~Dl~~----~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~ 180 (482)
T 1wb1_A 121 LDHFNIP-IIVVITKSDNAG----TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELK 180 (482)
T ss_dssp HHHTTCC-BCEEEECTTSSC----HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHH
T ss_pred HHHcCCC-EEEEEECCCccc----chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHH
Confidence 8888999 599999999863 334566667777777766 542 4699999999999998764
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=154.81 Aligned_cols=131 Identities=31% Similarity=0.458 Sum_probs=110.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+..+++.++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 41 ~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~ 113 (397)
T 1d2e_A 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-------MPQTREHLLL 113 (397)
T ss_dssp HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred hhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCC-------CHHHHHHHHH
Confidence 456678899999999999889888999999999999999999999999999999999999887 4778888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...++|++++++||+|+.. ....++.+.+++..+++..++... .++++++||++|.|
T Consensus 114 ~~~~~vp~iivviNK~Dl~~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 114 ARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGYKGE-ETPIIVGSALCALE 171 (397)
T ss_dssp HHHTTCCCEEEEEECGGGCS---CHHHHHHHHHHHHHHHHHTTSCTT-TSCEEECCHHHHHT
T ss_pred HHHcCCCeEEEEEECcccCC---CHHHHHHHHHHHHHHHHHcCCCcc-cCcEEEeehhhccc
Confidence 88889997789999999863 233455666778888888876432 57999999999876
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-23 Score=167.00 Aligned_cols=98 Identities=28% Similarity=0.411 Sum_probs=91.7
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
.++|+.++|++||+|+..+...+.|+++.++|+|||||.+|...+.++++.+|++|+|||+.+|. ..|++..+
T Consensus 40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV-------~~qT~~v~ 112 (638)
T 3j25_A 40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-------QAQTRILF 112 (638)
T ss_dssp CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTT-------CSHHHHHH
T ss_pred cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCC-------cHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999998 58999999
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
+++...++| .|+++||||+..++..
T Consensus 113 ~~a~~~~lp-~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 113 HALRKMGIP-TIFFINKIDQNGIDLS 137 (638)
T ss_dssp HHHHHHTCS-CEECCEECCSSSCCSH
T ss_pred HHHHHcCCC-eEEEEeccccccCCHH
Confidence 999999999 5889999998776543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=162.57 Aligned_cols=129 Identities=29% Similarity=0.449 Sum_probs=98.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|.+++|+++|+|++.....+..++..++|||||||++|...+..+++.+|++|+|+|++++. ..++.+++..
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-------~~QTrEhL~l 406 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-------MPQTREHILL 406 (1289)
T ss_dssp --------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-------CTTHHHHHHH
T ss_pred cccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-------cHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999987 3678888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
+...++|++|+++||+|+.. ....++.+++++..+++..++... .++++++||++|
T Consensus 407 l~~lgIP~IIVVINKiDLv~---d~e~le~i~eEi~elLk~~G~~~~-~vp~IpvSAktG 462 (1289)
T 3avx_A 407 GRQVGVPYIIVFLNKCDMVD---DEELLELVEMEVRELLSQYDFPGD-DTPIVRGSALKA 462 (1289)
T ss_dssp HHHHTCSCEEEEEECCTTCC---CHHHHHHHHHHHHHHHHHTTSCTT-TCCEEECCSTTT
T ss_pred HHHcCCCeEEEEEeeccccc---chhhHHHHHHHHHHHHHhcccccc-ceeEEEEEeccC
Confidence 88889997789999999864 233455666778888888876432 579999999999
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=152.78 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=88.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
..|..+.|+++|+|+......+.+. ++.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 40 ~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv-------~~qt 112 (599)
T 3cb4_D 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-------EAQT 112 (599)
T ss_dssp -----------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC-------CTHH
T ss_pred ccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHH
Confidence 3577889999999999998888775 378999999999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...++| +++++||+|+..... .+..+++. +..++. ..+++++||++|.|+++|.
T Consensus 113 ~~~~~~~~~~~ip-iIvViNKiDl~~a~~-----~~v~~ei~---~~lg~~---~~~vi~vSAktg~GI~~Ll 173 (599)
T 3cb4_D 113 LANCYTAMEMDLE-VVPVLNKIDLPAADP-----ERVAEEIE---DIVGID---ATDAVRCSAKTGVGVQDVL 173 (599)
T ss_dssp HHHHHHHHHTTCE-EEEEEECTTSTTCCH-----HHHHHHHH---HHTCCC---CTTCEEECTTTCTTHHHHH
T ss_pred HHHHHHHHHCCCC-EEEeeeccCcccccH-----HHHHHHHH---HHhCCC---cceEEEeecccCCCchhHH
Confidence 8888888888998 899999999875431 22222332 233442 2368999999999998753
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=147.59 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=100.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeC-----------------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETD-----------------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVI 61 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~-----------------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvv 61 (156)
.+..++|+++|+|++..+..+.+. ...++|||||||++|...+..++..+|++|+|+
T Consensus 35 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 114 (410)
T 1kk1_A 35 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114 (410)
T ss_dssp CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEE
T ss_pred cccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEE
Confidence 456788999999998876655441 168999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 62 SARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 62 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
|++++.. ..++.+++..+...+.+++++++||+|+.... ...+..+++..+++.... ..++++++||
T Consensus 115 da~~g~~------~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~~i~vSA 181 (410)
T 1kk1_A 115 AANEPCP------RPQTREHLMALQIIGQKNIIIAQNKIELVDKE----KALENYRQIKEFIEGTVA---ENAPIIPISA 181 (410)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHTTSTT---TTCCEEECBT
T ss_pred ECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEECccCCCHH----HHHHHHHHHHHHHHhcCc---CCCeEEEeeC
Confidence 9988641 36788888777777876689999999986422 122233344445443221 3579999999
Q ss_pred ccCCCCccCC
Q psy10355 142 ELEKNPLLLG 151 (156)
Q Consensus 142 ~~g~gi~~l~ 151 (156)
++|.|++.|.
T Consensus 182 ~~g~gi~~L~ 191 (410)
T 1kk1_A 182 LHGANIDVLV 191 (410)
T ss_dssp TTTBSHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999998653
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-21 Score=153.32 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=90.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeC-----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETD-----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
..|..+.|+++|+|+......+.+. .+.++|||||||.+|...+..+++.+|++|+|+|++++. ..++
T Consensus 42 ~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-------~~qt 114 (600)
T 2ywe_A 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI-------EAQT 114 (600)
T ss_dssp --------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-------CHHH
T ss_pred ccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-------cHHH
Confidence 3578889999999999888888764 278999999999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+..+...++| +++++||+|+..... .+..+++. +..++. ..+++++||++|.|+++|
T Consensus 115 ~~~~~~a~~~~ip-iIvviNKiDl~~a~~-----~~v~~el~---~~lg~~---~~~vi~vSAktg~GI~~L 174 (600)
T 2ywe_A 115 VANFWKAVEQDLV-IIPVINKIDLPSADV-----DRVKKQIE---EVLGLD---PEEAILASAKEGIGIEEI 174 (600)
T ss_dssp HHHHHHHHHTTCE-EEEEEECTTSTTCCH-----HHHHHHHH---HTSCCC---GGGCEECBTTTTBSHHHH
T ss_pred HHHHHHHHHCCCC-EEEEEeccCccccCH-----HHHHHHHH---HhhCCC---cccEEEEEeecCCCchHH
Confidence 8888888888999 899999999875431 22222232 333442 236899999999999765
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=143.58 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=101.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|+| +.+. ..++.+++..+...++|.
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~-------~~qt~e~~~~~~~~~i~~ 114 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL-------DAHTGECIIALDLLGFKH 114 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC-------CHHHHHHHHHHHHTTCCE
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC-------cHHHHHHHHHHHHcCCCe
Confidence 68999999999999999999999999999999999999999999999999 8776 477888888888889995
Q ss_pred EEEEEe-CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE--eeccc---CCCCccCC
Q psy10355 93 LVVLIN-KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMP--CSGEL---EKNPLLLG 151 (156)
Q Consensus 93 ~ivv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~Sa~~---g~gi~~l~ 151 (156)
+++++| |+|+ .. ...++..+++..+++..++ ..+++++ +||++ |+|+++|.
T Consensus 115 ~ivvvNNK~Dl-~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~~~~SA~~~~~g~gi~~L~ 171 (370)
T 2elf_A 115 GIIALTRSDST-HM----HAIDELKAKLKVITSGTVL---QDWECISLNTNKSAKNPFEGVDELK 171 (370)
T ss_dssp EEEEECCGGGS-CH----HHHHHHHHHHHHHTTTSTT---TTCEEEECCCCTTSSSTTTTHHHHH
T ss_pred EEEEEEeccCC-CH----HHHHHHHHHHHHHHHhcCC---CceEEEecccccccCcCCCCHHHHH
Confidence 488999 9997 32 2234445556666655443 2579999 99999 99988764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=144.49 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=88.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEe---------------C--------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET---------------D--------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVI 61 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~---------------~--------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvv 61 (156)
.+..++|+++|+|++..+..... . ...+.|||||||++|...+..++..+|++|+|+
T Consensus 33 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 112 (408)
T 1s0u_A 33 TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112 (408)
T ss_dssp CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEE
T ss_pred cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEE
Confidence 45678899999999877655433 1 168999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 62 SARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 62 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
|++++.. ..++.+++..+...+.+++++++||+|+.........+++ +..+++.... .+++++++||
T Consensus 113 da~~g~~------~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~----i~~~l~~~~~---~~~~~i~vSA 179 (408)
T 1s0u_A 113 AANEPCP------QPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQ----IKEFVKGTIA---ENAPIIPISA 179 (408)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHH----HHHHHTTSTT---TTCCEEEC--
T ss_pred ECCCCCC------CchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHH----HHHHHhhcCC---CCCeEEEeeC
Confidence 9988641 3677788777777777668999999998754322222333 3444443221 2579999999
Q ss_pred ccCCCCccCC
Q psy10355 142 ELEKNPLLLG 151 (156)
Q Consensus 142 ~~g~gi~~l~ 151 (156)
++|+|++.|.
T Consensus 180 ~~g~gi~~L~ 189 (408)
T 1s0u_A 180 HHEANIDVLL 189 (408)
T ss_dssp ----CHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999998753
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=151.66 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=74.2
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC-------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD-------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG 75 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~-------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~ 75 (156)
.++|+.++|++||+|+..+...+.|. ++.++|+|||||-+|...+.++++-+|++|+|||+.+|. .
T Consensus 51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-------~ 123 (709)
T 4fn5_A 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-------E 123 (709)
T ss_dssp -----------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-------C
T ss_pred ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-------c
Confidence 46899999999999999999999885 588999999999999999999999999999999999998 5
Q ss_pred cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 76 GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+++..++++...++| .++++||||+..++.
T Consensus 124 ~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 124 PQSETVWRQANKYGVP-RIVYVNKMDRQGANF 154 (709)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEECSSSTTCCH
T ss_pred hhHHHHHHHHHHcCCC-eEEEEccccccCccH
Confidence 8999999999999999 699999999876544
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=146.37 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=85.5
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+.+..++|||||||.+|...+..+++.+|++|+|+|++.+. ..+....+..
T Consensus 57 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~-------~~~t~~~~~~ 129 (528)
T 3tr5_A 57 SDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-------EPRTIKLMEV 129 (528)
T ss_dssp HHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHHH
Confidence 477788999999999999999999999999999999999999999999999999999999887 4677888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcc
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+...++| +++++||+|+....
T Consensus 130 ~~~~~iP-iivviNK~Dl~~~~ 150 (528)
T 3tr5_A 130 CRLRHTP-IMTFINKMDRDTRP 150 (528)
T ss_dssp HHTTTCC-EEEEEECTTSCCSC
T ss_pred HHHcCCC-EEEEEeCCCCcccc
Confidence 8888999 89999999986543
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=136.46 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=89.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++++. ..++..++..
T Consensus 57 ~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-------~~~t~~~~~~ 129 (529)
T 2h5e_A 57 SDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-------EDRTRKLMEV 129 (529)
T ss_dssp -------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred eccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-------hHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999876 4667777777
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|+..... .++.+++...+ +.... ...+...||+++.|+.+|.
T Consensus 130 ~~~~~ip-iivviNK~Dl~~~~~-----~~~~~~i~~~l---~~~~~-~~~~pi~sa~~~~Gv~dl~ 186 (529)
T 2h5e_A 130 TRLRDTP-ILTFMNKLDRDIRDP-----MELLDEVENEL---KIGCA-PITWPIGCGKLFKGVYHLY 186 (529)
T ss_dssp HTTTTCC-EEEEEECTTSCCSCH-----HHHHHHHHHHH---CCEEE-ESEEEESCGGGCCEEEETT
T ss_pred HHHcCCC-EEEEEcCcCCccccH-----HHHHHHHHHHh---CCCcc-ceecceecccCcceeeehh
Confidence 7777899 899999999875432 12223333322 32110 1123337999999988774
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=132.48 Aligned_cols=109 Identities=28% Similarity=0.347 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+||||||++|...+..++..+|++++|+|++++.. ..++.+++..+...+.+++++++||+|+...
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~---- 144 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVVSK---- 144 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSCH----
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccccch----
Confidence 789999999999999999999999999999999998751 2677788887777777559999999998742
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+..+++...++..+. .+++++++||++|.|+++|.
T Consensus 145 ~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~L~ 183 (403)
T 3sjy_A 145 EEALSQYRQIKQFTKGTWA---ENVPIIPVSALHKINIDSLI 183 (403)
T ss_dssp HHHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC---CCCEEEEEECCCCcChHHHH
Confidence 2233334445555544433 35799999999999998753
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-20 Score=144.48 Aligned_cols=122 Identities=30% Similarity=0.380 Sum_probs=95.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
.+|+|.+.....+.+++..++|||||||++|...+..++..+|++++|+|++++. .+++.+++..+...++|
T Consensus 34 ~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~-------~~qT~e~l~~~~~~~vP- 105 (501)
T 1zo1_I 34 AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-------MPQTIEAIQHAKAAQVP- 105 (501)
T ss_dssp BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS-------CTTTHHHHHHHHHTTCC-
T ss_pred CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc-------cHHHHHHHHHHHhcCce-
Confidence 4789999888888888999999999999999999999999999999999999887 47888999888888999
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA---KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+...+... +.+.+ ...++.+. ..++++++||++|.|+++|.
T Consensus 106 iIVviNKiDl~~~~~~~-----v~~~l----~~~~~~~~~~~~~~~~v~vSAktG~gI~eLl 158 (501)
T 1zo1_I 106 VVVAVNKIDKPEADPDR-----VKNEL----SQYGILPEEWGGESQFVHVSAKAGTGIDELL 158 (501)
T ss_dssp EEEEEECSSSSTTCCCC-----TTCCC----CCCCCCTTCCSSSCEEEECCTTTCTTCTTHH
T ss_pred EEEEEEeccccccCHHH-----HHHHH----HHhhhhHHHhCCCccEEEEeeeeccCcchhh
Confidence 89999999986432211 01111 11111111 13689999999999998753
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=122.76 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=83.5
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..+.+..+.....+..++ ..+.||||||+++|...+..++++++++++|+|.++ ..+|.....|...+...
T Consensus 38 f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~---~~Sf~~i~~~~~~i~~~ 114 (216)
T 4dkx_A 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN---VNSFQQTTKWIDDVRTE 114 (216)
T ss_dssp CC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHH
T ss_pred CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch---hHHHHHHHHHHHHHHHh
Confidence 3445555555555555555544 578999999999999999999999999999999987 44454445555555544
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...++| +++|+||+|+..... ... ++...+.+.. +++++++||++|+||+++
T Consensus 115 ~~~~~p-iilVgNK~Dl~~~r~--V~~----~e~~~~a~~~------~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 115 RGSDVI-IMLVGNKTDLADKRQ--VSI----EEGERKAKEL------NVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp HTTSSE-EEEEEECTTCGGGCC--SCH----HHHHHHHHHH------TCEEEEEBTTTTBSHHHH
T ss_pred cCCCCe-EEEEeeccchHhcCc--ccH----HHHhhHHHHh------CCeeEEEeCCCCcCHHHH
Confidence 445677 899999999753211 111 2233344444 358999999999999875
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=135.78 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=84.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCC-------eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDR-------KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG 76 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~-------~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~ 76 (156)
..|+.+.|+++|+|+......+.+.+ +.++|||||||.+|...+..+++.+|++|+|+|++++. ..
T Consensus 49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~ 121 (704)
T 2rdo_7 49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-------QP 121 (704)
T ss_pred eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-------cH
Confidence 36888999999999999999999887 89999999999999999999999999999999999886 46
Q ss_pred chHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 77 QTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
++...+..+...++| +++++||+|+...
T Consensus 122 qt~~~~~~~~~~~ip-~ilviNKiD~~~~ 149 (704)
T 2rdo_7 122 QSETVWRQANKYKVP-RIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHHHHHHHcCCC-EEEEEeCCCcccc
Confidence 777888888888999 7999999998654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=124.74 Aligned_cols=117 Identities=21% Similarity=0.098 Sum_probs=85.1
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH----------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP----------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~----------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..+|+|++.....+.+++..+.+|||||+.++.. .+..++ +.+|++++|+|++.. ....
T Consensus 30 ~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~ 100 (256)
T 3iby_A 30 NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHL 100 (256)
T ss_dssp ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHH
T ss_pred CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHH
Confidence 3469999999999999999999999999987753 344455 789999999999762 2344
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....++...++| +++|+||+|+............ +.+.+ +++++++||++|.|+++|.
T Consensus 101 ~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~~~~~-------l~~~l------g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 101 YLTSQLFELGKP-VVVALNMMDIAEHRGISIDTEK-------LESLL------GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHHHHHTTSCSC-EEEEEECHHHHHHTTCEECHHH-------HHHHH------CSCEEECBGGGTBSHHHHH
T ss_pred HHHHHHHHcCCC-EEEEEEChhcCCcCCcHHHHHH-------HHHHc------CCCEEEEECCCCCCHHHHH
Confidence 455566667888 8999999997532211111222 22233 4699999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-18 Score=116.08 Aligned_cols=122 Identities=30% Similarity=0.362 Sum_probs=88.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
.++++.+.....+..++..+.+|||||++++...+..+++.+|++++|+|++++. ..++.+.+......++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p- 109 (178)
T 2lkc_A 38 AGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV-------MPQTVEAINHAKAANVP- 109 (178)
T ss_dssp CCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC-------CHHHHHHHHHHGGGSCC-
T ss_pred CCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHHHHhCCCC-
Confidence 4567777777788889999999999999999888888899999999999998765 24556666666666888
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC-CC--CCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA-AK--DLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+.... . .++. ..++..+... .. ..+++++||++|.|+++|.
T Consensus 110 ~ilv~nK~Dl~~~~--~---~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 110 IIVAINKMDKPEAN--P---DRVM----QELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp EEEEEETTTSSCSC--H---HHHH----HHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred EEEEEECccCCcCC--H---HHHH----HHHHhcCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 89999999986421 1 1111 1122222111 11 2589999999999998753
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-17 Score=132.18 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=70.9
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+.
T Consensus 51 ~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-------~~~t~~~~~ 123 (691)
T 1dar_A 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-------EPQSETVWR 123 (691)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHH
T ss_pred eccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-------chhhHHHHH
Confidence 4688889999999999999999999999999999999999999999999999999999999876 466777788
Q ss_pred HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.+...++| +++++||+|+...
T Consensus 124 ~~~~~~~p-~ivviNKiD~~~~ 144 (691)
T 1dar_A 124 QAEKYKVP-RIAFANKMDKTGA 144 (691)
T ss_dssp HHHHTTCC-EEEEEECTTSTTC
T ss_pred HHHHcCCC-EEEEEECCCcccC
Confidence 88888999 7999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=112.01 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=84.5
Q ss_pred HHhhcCceeeeeeEEEEeCC---eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR---KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+..++++.+.....+.+++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+....
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~ 109 (178)
T 2hxs_A 33 KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ---SFENLEDWYTVVKKVS 109 (178)
T ss_dssp HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHH
T ss_pred CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHh
Confidence 45556666666667777765 78999999999999989999999999999999998743 1211122222222211
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+.|++++|+||+|+...... ..+ +...+.+.. +++++++||++|.|++++.
T Consensus 110 ~~~~~~~~iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 110 EESETQPLVALVGNKIDLEHMRTI--KPE----KHLRFCQEN------GFSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp HHHTCCCEEEEEEECGGGGGGCSS--CHH----HHHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred cccCCCCeEEEEEEcccccccccc--CHH----HHHHHHHHc------CCcEEEEeCCCCCCHHHHH
Confidence 1 256657899999997531110 011 122333333 3589999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=122.76 Aligned_cols=121 Identities=21% Similarity=0.132 Sum_probs=88.3
Q ss_pred HhhcCceeeeeeEEEEeC-CeEEEEEeCCCCcCh----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETD-RKHFTILDAPGHKSF----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~~----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
...+++|.......+..+ +.++.||||||+.++ ...+..+++.+|++++|+|++++. ..+..
T Consensus 39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~-------~~~~~ 111 (308)
T 3iev_A 39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW-------RPRDE 111 (308)
T ss_dssp CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS-------CHHHH
T ss_pred CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-------CchhH
Confidence 456788888888888888 999999999999653 367788899999999999998765 24444
Q ss_pred HH-HHHHHHcCCCcEEEEEeCCCCC-CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 80 EH-AMLAKTAGVKHLVVLINKMDDP-TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 80 ~~-~~~~~~~~~~~~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. +..+...+.| +++|+||+|+. .... ... .+..+.+..+ ...+++++||++|.|+++|
T Consensus 112 ~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~----~~~---~~~~l~~~~~----~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 112 EIYQNFIKPLNKP-VIVVINKIDKIGPAKN----VLP---LIDEIHKKHP----ELTEIVPISALKGANLDEL 172 (308)
T ss_dssp HHHHHHTGGGCCC-EEEEEECGGGSSSGGG----GHH---HHHHHHHHCT----TCCCEEECBTTTTBSHHHH
T ss_pred HHHHHHHHhcCCC-EEEEEECccCCCCHHH----HHH---HHHHHHHhcc----CCCeEEEEeCCCCCCHHHH
Confidence 55 4555566788 89999999986 2211 111 1222223332 1358999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-17 Score=110.00 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=81.9
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 111 (177)
T 1wms_A 35 QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQNLSNWKKEFIYYADV 111 (177)
T ss_dssp ----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTC
T ss_pred CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHccc
Confidence 3445566666666666666 58999999999999999999999999999999998743 22111223333332222
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++|+||+|+....... ++ +..+++.. ..++++++||++|.|++++
T Consensus 112 ~~~~~~p-~i~v~nK~Dl~~~~~~~---~~----~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 112 KEPESFP-FVILGNKIDISERQVST---EE----AQAWCRDN-----GDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp SCTTTSC-EEEEEECTTCSSCSSCH---HH----HHHHHHHT-----TCCCEEECCTTTCTTHHHH
T ss_pred cccCCCc-EEEEEECCcccccccCH---HH----HHHHHHhc-----CCceEEEEeCCCCCCHHHH
Confidence 4567 89999999986322211 12 22233322 2468999999999999875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=129.92 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=91.2
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+...|+|.+.....+..++..+.+||||| +++|... ...+++.+|++++|+|++++. ..+..
T Consensus 224 ~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~-------~~~~~ 296 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-------IEQDK 296 (456)
T ss_dssp CC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-------CHHHH
T ss_pred CCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc-------CHHHH
Confidence 44678999999999999999999999999 5666554 445889999999999998876 35666
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+.... ....+++++.+...+...+ ..+++++||++|+|+++|.
T Consensus 297 ~~~~~~~~~~~~-~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 297 RIAGYAHEAGKA-VVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp HHHHHHHHTTCE-EEEEEECGGGSCCC--SSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHH
T ss_pred HHHHHHHHcCCC-EEEEEEChhcCCCc--hHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHH
Confidence 777777778888 89999999986432 2234455555554443332 4689999999999998764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=115.65 Aligned_cols=123 Identities=18% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+..
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~ 108 (183)
T 2fu5_C 35 STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SFD---NIRNWIRNIEE 108 (183)
T ss_dssp -CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHH
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---HHH---HHHHHHHHHHH
Confidence 34455566666666666666 78999999999999988899999999999999998743 111 11112222222
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... .++ ...+++.. +++++++||++|.|++++.
T Consensus 109 ~~~~~~p-iilv~nK~Dl~~~~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 109 HASADVE-KMILGNKCDVNDKRQVS--KER----GEKLALDY------GIKFMETSAKANINVENAF 162 (183)
T ss_dssp HSCTTCE-EEEEEEC--CCSCCCSC--HHH----HHHHHHHH------TCEEEECCC---CCHHHHH
T ss_pred hcCCCCC-EEEEEECccCCccCcCC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 3567 89999999986421110 111 22333443 3589999999999998753
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=130.38 Aligned_cols=91 Identities=26% Similarity=0.333 Sum_probs=83.4
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.+.|+++|+|+......+.+.+..+++||||||.+|...+..+++.+|++++|+|++.+. ..++...+..
T Consensus 49 ~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-------~~qt~~~~~~ 121 (665)
T 2dy1_A 49 TDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-------QVGTERAWTV 121 (665)
T ss_dssp SCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred ccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-------chhHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999998887 4677788888
Q ss_pred HHHcCCCcEEEEEeCCCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~ 103 (156)
+...++| +++++||+|+.
T Consensus 122 ~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp HHHTTCC-EEEEEECGGGC
T ss_pred HHHccCC-EEEEecCCchh
Confidence 8888999 79999999986
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=114.94 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=78.3
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.++.+.....+.+++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+......
T Consensus 57 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~ 133 (201)
T 2hup_A 57 RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---SFLSVPHWIEDVRKYAGS 133 (201)
T ss_dssp --------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCC
Confidence 3344445555556666666 58999999999999999999999999999999997642 221112222222221124
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDL-SFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ..+ ++..+++.. ++ +++++||++|+|++++.
T Consensus 134 ~~p-iilv~NK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 134 NIV-QLLIGNKSDLSELREV--SLA----EAQSLAEHY------DILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp TCE-EEEEEECTTCGGGCCS--CHH----HHHHHHHHT------TCSEEEECBTTTTBSHHHHH
T ss_pred CCC-EEEEEECCcccccccc--CHH----HHHHHHHHc------CCCEEEEEeCCCCCCHHHHH
Confidence 567 8999999998531110 111 233334444 34 89999999999998753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=116.58 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=82.2
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+.+++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~ 125 (213)
T 3cph_A 49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDER---TFTNIKQWFKTVNEHANDE 125 (213)
T ss_dssp SSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHTTTC
T ss_pred cCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345666666666777777 67999999999999888889999999999999998743 1111122222222222235
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+......... ...+.+.. +++++++||++|.|++++.
T Consensus 126 ~p-iilv~nK~Dl~~~~~~~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 126 AQ-LLLVGNKSDMETRVVTADQ-------GEALAKEL------GIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp SE-EEEEEECTTCSSCCSCHHH-------HHHHHHHH------TCCEEECBTTTTBSSHHHH
T ss_pred CC-EEEEEECCCCcccccCHHH-------HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 67 8999999998432222211 22233333 3589999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=114.58 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~ 119 (196)
T 3tkl_A 43 ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRYAS 119 (196)
T ss_dssp SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSC
T ss_pred CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34456777777777777776 57999999999999999999999999999999998743 22212222222222222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++|+||+|+....... .. ....+.+.. +++++++||++|.|++++
T Consensus 120 ~~~p-~ilv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 120 ENVN-KLLVGNKCDLTTKKVVD--YT----TAKEFADSL------GIPFLETSAKNATNVEQS 169 (196)
T ss_dssp TTCE-EEEEEECTTCTTTCCSC--HH----HHHHHHHHT------TCCEEEECTTTCTTHHHH
T ss_pred CCCC-EEEEEECcccccccccC--HH----HHHHHHHHc------CCcEEEEeCCCCCCHHHH
Confidence 3667 89999999986432111 11 122333333 468999999999999865
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=133.66 Aligned_cols=126 Identities=26% Similarity=0.305 Sum_probs=85.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.+.|+++|+|+......+.+++..++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+.
T Consensus 49 ~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-------~~~~~~~~~ 121 (693)
T 2xex_A 49 QMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-------EPQTETVWR 121 (693)
T ss_dssp ---------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-------CHHHHHHHH
T ss_pred ecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-------cHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999999999999999998876 366777777
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+...++| +++++||+|+.... ...+.+++...+ +... ...++|+|+ |.|++.
T Consensus 122 ~~~~~~~p-~ilviNK~Dl~~~~-----~~~~~~~l~~~l---~~~~--~~~~ipisa--~~~~~~ 174 (693)
T 2xex_A 122 QATTYGVP-RIVFVNKMDKLGAN-----FEYSVSTLHDRL---QANA--APIQLPIGA--EDEFEA 174 (693)
T ss_dssp HHHHTTCC-EEEEEECTTSTTCC-----HHHHHHHHHHHH---CCCE--EESEEEECC--GGGCCE
T ss_pred HHHHcCCC-EEEEEECCCccccc-----hHHHHHHHHHHh---CCCc--eeEEeeccc--CCCcce
Confidence 78888899 89999999987532 233333444333 2211 124688888 455443
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-19 Score=141.79 Aligned_cols=125 Identities=28% Similarity=0.342 Sum_probs=97.2
Q ss_pred HHhhcCceeeeeeEEEEe-CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 10 QKREKGKTVEVGRAYFET-DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+..+|+|.+.....+.+ ++..++|||||||++|...+..+++.+|++++|+|++++. .+++.+++..+...
T Consensus 31 ~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~-------~~qt~e~l~~~~~~ 103 (537)
T 3izy_P 31 AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV-------MKQTVESIQHAKDA 103 (537)
T ss_dssp HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC-------CHHHHHHHHHHHTT
T ss_pred cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc-------cHHHHHHHHHHHHc
Confidence 345679999988888877 5678999999999999999999999999999999999987 47889999999888
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC---CCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA---AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++++||+|+........ .+.+. ..++.. ...++++++||++|.|+++|.
T Consensus 104 ~vP-iIVViNKiDl~~~~~~~v-----~~~l~----~~~~~~e~~~~~~~iv~vSAktG~GI~eLl 159 (537)
T 3izy_P 104 HVP-IVLAINKCDKAEADPEKV-----KKELL----AYDVVCEDYGGDVQAVHVSALTGENMMALA 159 (537)
T ss_dssp TCC-EEECCBSGGGTTTSCCSS-----SSHHH----HTTSCCCCSSSSEEECCCCSSSSCSSHHHH
T ss_pred CCc-EEEEEecccccccchHHH-----HHHHH----hhhhhHHhcCCCceEEEEECCCCCCchhHH
Confidence 999 899999999864332211 11111 111111 024689999999999998763
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=114.33 Aligned_cols=127 Identities=17% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+.....
T Consensus 53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---s~~~~~~~~~~i~~~~~ 129 (192)
T 2il1_A 53 EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFDDLPKWMKMIDKYAS 129 (192)
T ss_dssp ----CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSC
T ss_pred cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcC
Confidence 34455666666666666665 57999999999999999999999999999999998743 22111222222222222
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+...... ..+ +...+.+.. .+.+++++||++|+|++++.
T Consensus 130 ~~~p-iilV~NK~Dl~~~~~v--~~~----~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 130 EDAE-LLLVGNKLDCETDREI--TRQ----QGEKFAQQI-----TGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp TTCE-EEEEEECGGGGGGCCS--CHH----HHHHHHHTS-----TTCEEEECBTTTTBSHHHHH
T ss_pred CCCc-EEEEEECccccccccc--CHH----HHHHHHHhc-----CCCeEEEEeCCCCCCHHHHH
Confidence 3567 8999999997532111 011 122333332 24689999999999998753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=115.51 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=84.3
Q ss_pred hhcCceeeeeeEEEE-eCCeEEEEEeCCCCcC----------hHHHHHhhhhc---CCEEEEEEeCCCCccccccCCCcc
Q psy10355 12 REKGKTVEVGRAYFE-TDRKHFTILDAPGHKS----------FVPNMIGGTAQ---ADLAVLVISARKGEFETGFDRGGQ 77 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~-~~~~~~~iiDtpG~~~----------~~~~~~~~~~~---~d~~ilvvD~~~~~~~~~~~~~~~ 77 (156)
...|+|.+.....+. .++..+.||||||+.. +...+..+++. +|++++|+|++++. ...
T Consensus 60 ~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~ 132 (223)
T 4dhe_A 60 KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL-------TEL 132 (223)
T ss_dssp CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHH
T ss_pred CCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC-------CHH
Confidence 455778887777776 5678999999999633 34445555555 78899999998765 234
Q ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 78 TREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 78 ~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+..+...+.| +++|+||+|+............+.+.+..+... +.. ...+++++||++|+|+++|.
T Consensus 133 ~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 133 DRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQKSLDAYRDA-GYA--GKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp HHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH-TCC--SCEEEEEEBTTTTBSHHHHH
T ss_pred HHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHHHHHhhhhc-ccC--CCCeEEEeecCCCcCHHHHH
Confidence 45555666667888 899999999864222111222222333222111 111 25689999999999998764
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-17 Score=133.27 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=84.2
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh--
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS-- 108 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~-- 108 (156)
.++|||||||++|...+..+++.+|++|+|+|+++|. .+++.+.+..+...++| +++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv-------~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-------CHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-------cHhHHHHHHHHHHcCCe-EEEEeccccccccccccc
Confidence 5999999999999998889999999999999999987 47888888888888999 8999999998532100
Q ss_pred ------------H---HHHHHHHHHHHHHHHHcCCCC---------CCCCeEEEeecccCCCCccCC
Q psy10355 109 ------------E---ARYNECKDKILPYLKKLGFNA---------AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ------------~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.+...++...+...++.. ...++++++||++|.|+++|.
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl 209 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELL 209 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHH
Confidence 0 112222223333444444421 124589999999999998763
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=113.30 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=77.3
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~ 107 (170)
T 1g16_A 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER---TFTNIKQWFKTVNEHAND 107 (170)
T ss_dssp -------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445555555555666654 57999999999999888889999999999999998743 111111222222221123
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++++||+|+........ ....+.+.. +++++++||++|.|++++.
T Consensus 108 ~~p-iilv~nK~Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 108 EAQ-LLLVGNKSDMETRVVTAD-------QGEALAKEL------GIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp TCE-EEEEEECTTCTTCCSCHH-------HHHHHHHHH------TCCEEECBTTTTBSHHHHH
T ss_pred CCc-EEEEEECccCCcCccCHH-------HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 567 899999999843222221 122233333 3589999999999998753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=112.12 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=80.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--------
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-------- 88 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 88 (156)
|++.....+...+..+.+|||||++++...+..+++.+|++|+|+|+++.. +| ......+..+...
T Consensus 50 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~ 123 (199)
T 4bas_A 50 TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL---RL---CVVKSEIQAMLKHEDIRRELP 123 (199)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTSHHHHSBCT
T ss_pred ccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH---HH---HHHHHHHHHHHhChhhhhccc
Confidence 444555667788999999999999999999999999999999999998753 11 1111222222221
Q ss_pred ---CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHH--HHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 ---GVKHLVVLINKMDDPTVMWSEARYNECKDKIL--PYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++| +++|+||+|+..... ..++.+.+. .+.+. ..++++++||++|+|++++.
T Consensus 124 ~~~~~p-iilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~ 180 (199)
T 4bas_A 124 GGGRVP-FLFFANKMDAAGAKT----AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGF 180 (199)
T ss_dssp TSCBCC-EEEEEECTTSTTCCC----HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHH
T ss_pred ccCCCC-EEEEEECcCCCCCCC----HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHH
Confidence 678 899999999864321 122222221 11111 25789999999999998763
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-18 Score=119.72 Aligned_cols=114 Identities=15% Similarity=0.017 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......+.| +++|+||+|+.....
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~ 150 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAA 150 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccc
Confidence 3367999999999999999999999999999999998743 121112222222222223678 899999999742100
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.........+....+.+.. +++++++||++|.|++++.
T Consensus 151 ~~~~~~v~~~~~~~~~~~~------~~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 151 TEGQKCVPGHFGEKLAMTY------GALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HTTCCCCCHHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred cccccccCHHHHHHHHHHc------CCeEEEeeCCCCCCHHHHH
Confidence 0000000011222333333 3589999999999998753
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=135.91 Aligned_cols=135 Identities=20% Similarity=0.195 Sum_probs=89.7
Q ss_pred cCccccHHHhhcCceeeeeeEEEEeC----------------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFETD----------------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
...|+.+.|+++|+|+......+.+. +..++|||||||.+|...+..+++.+|++|+|+|++++
T Consensus 55 ~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 55 RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp ------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred eeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 34577889999999999888877765 68899999999999999999999999999999999988
Q ss_pred ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc--hh----HHHHHHHHHHHHHHHHHc-----C---CCCCC
Q psy10355 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM--WS----EARYNECKDKILPYLKKL-----G---FNAAK 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~--~~----~~~~~~~~~~~~~~~~~~-----~---~~~~~ 132 (156)
. ..++...+..+...++| +++++||+|+...+ .. ...+....+.+...+... + +.+.
T Consensus 135 ~-------~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~- 205 (842)
T 1n0u_A 135 V-------CVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA- 205 (842)
T ss_dssp S-------CHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-
T ss_pred C-------CHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-
Confidence 6 36677777777778889 79999999975211 01 112333334444444321 1 2221
Q ss_pred CCeEEEeecccCCC
Q psy10355 133 DLSFMPCSGELEKN 146 (156)
Q Consensus 133 ~~~~i~~Sa~~g~g 146 (156)
..++...||++|.|
T Consensus 206 ~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 206 RGTVAFGSGLHGWA 219 (842)
T ss_dssp GTCEEEEETTTTEE
T ss_pred EeeeEEeecccccc
Confidence 23577789988754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=114.45 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=81.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~~~~~~~~~i~~~~~~~~ 132 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREIEQYASNKV 132 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 34455555555666666 57999999999999999999999999999999998743 22211223332222222356
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 133 p-iilv~NK~Dl~~~~~v--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 133 I-TVLVGNKIDLAERREV--SQQR----AEEFSEAQ------DMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp E-EEEEEECGGGGGGCSS--CHHH----HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred C-EEEEEECCCCcccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 6 8999999997532111 0111 22233333 3589999999999998753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=110.17 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=73.3
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 117 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA---SFDNIQAWLTEIHEYAQHDV 117 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCC
Confidence 44555555555556665 47999999999999999999999999999999998743 11111122222222222456
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+....... .++ ...+.+.. +++++++||++|.|++++.
T Consensus 118 p-iilv~nK~Dl~~~~~~~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 118 A-LMLLGNKVDSAHERVVK--RED----GEKLAKEY------GLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp E-EEEEEECCSTTSCCCSC--HHH----HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred c-EEEEEECcccCcccccC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 7 89999999986421111 111 22233333 3589999999999998753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-17 Score=111.85 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=83.7
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 114 (186)
T 2bme_A 38 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNALTNWLTDARMLASQ 114 (186)
T ss_dssp TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCT
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445566666666666666 57999999999999999999999999999999998743 221112222222322234
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|+|++++.
T Consensus 115 ~~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 115 NIV-IILCGNKKDLDADREV--TFLE----ASRFAQEN------ELMFLETSALTGENVEEAF 164 (186)
T ss_dssp TCE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred CCc-EEEEEECccccccccc--CHHH----HHHHHHHc------CCEEEEecCCCCCCHHHHH
Confidence 667 8999999997532111 1111 22333333 4689999999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=127.71 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=84.9
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCC----------cChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGH----------KSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~----------~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
+..+|+|.+.....+.+++..+.+|||||+ ++|... ...+++.+|++++|+|++++. ..+..
T Consensus 204 ~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~-------s~~~~ 276 (436)
T 2hjg_A 204 SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-------IEQDK 276 (436)
T ss_dssp C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-------CHHHH
T ss_pred cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC-------cHHHH
Confidence 446799999999999999999999999998 334333 446889999999999999876 24555
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+..+...+.| +++|+||+|+..... ...++..+++...+... ...+++++||++|+|+++|.
T Consensus 277 ~~~~~~~~~~~~-iiiv~NK~Dl~~~~~--~~~~~~~~~~~~~l~~~-----~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 277 RIAGYAHEAGKA-VVIVVNKWDAVDKDE--STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp HHHHHHHHTTCE-EEEEEECGGGSCCCT--THHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTGGGHH
T ss_pred HHHHHHHHcCCc-EEEEEECccCCCcch--HHHHHHHHHHHHhcccC-----CCCCEEEEecccCCCHHHHH
Confidence 566666667888 899999999864321 12233444444333222 24689999999999999863
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-17 Score=113.28 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||++++...+..+++.+|++|+|+|+++.. +|. .....+..+.. .+.| +++|+||+|+...
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 128 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---SFN---AVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHSCSSCE-EEEEEECTTCTTS
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECcccCcc
Confidence 468999999999999999999999999999999998743 111 11112222222 3567 8999999998542
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... .+ ....+.+.. +++++++||++|.|++++.
T Consensus 129 ~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 129 RVVS--SE----RGRQLADHL------GFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp CCSC--HH----HHHHHHHHH------TCEEEECBTTTTBSSHHHH
T ss_pred cccC--HH----HHHHHHHHC------CCeEEEEECCCCCCHHHHH
Confidence 1111 11 122333333 3589999999999997653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-17 Score=110.68 Aligned_cols=117 Identities=23% Similarity=0.216 Sum_probs=76.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|++.....+.+++..+.+|||||++++. .....+++ ++|++++|+|++.. ......+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~ 102 (165)
T 2wji_A 32 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTL 102 (165)
T ss_dssp -----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHH
T ss_pred CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHH
Confidence 345778888888888889999999999998764 33445554 89999999999762 12222333
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+........ ....+.+.. +++++++||++|+|++++.
T Consensus 103 ~~~~~~~p-~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 103 QLMEMGAN-LLLALNKMDLAKSLGIEI-------DVDKLEKIL------GVKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHHHTTCC-EEEEEECHHHHHHTTCCC-------CHHHHHHHH------TSCEEECBGGGTBSHHHHH
T ss_pred HHHhcCCC-EEEEEEchHhccccChhh-------HHHHHHHHh------CCCEEEEEcCCCCCHHHHH
Confidence 44456788 899999999642110000 112222333 3589999999999998763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=118.68 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=83.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|++.....+..++..+.+|||||+.++.. ....++ ..+|++++|+|++... .....+..
T Consensus 35 ~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~ 105 (258)
T 3a1s_A 35 WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLE 105 (258)
T ss_dssp CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHH
Confidence 469999999999999999999999999987643 223444 5799999999997742 23334455
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++++||+|+......... ...+.+.+ +++++++||++|.|+++|.
T Consensus 106 l~~~~~p-vilv~NK~Dl~~~~~i~~~-------~~~l~~~l------g~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 106 ILEMEKK-VILAMTAIDEAKKTGMKID-------RYELQKHL------GIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHTTTCC-EEEEEECHHHHHHTTCCBC-------HHHHHHHH------CSCEEECCTTTCTTHHHHH
T ss_pred HHhcCCC-EEEEEECcCCCCccchHHH-------HHHHHHHc------CCCEEEEEeeCCcCHHHHH
Confidence 5567888 8999999997421111111 22223333 3699999999999998764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-17 Score=120.10 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=83.6
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++|.+.....+..++.++.||||||+.+ +...+..+++.+|++++|+|++++. .......+..
T Consensus 38 ~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~-------~~~~~~i~~~ 110 (301)
T 1wf3_A 38 RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP-------TPEDELVARA 110 (301)
T ss_dssp SSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC-------CHHHHHHHHH
T ss_pred CCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC-------ChHHHHHHHH
Confidence 456777766667778899999999999987 5677888999999999999998765 2344445455
Q ss_pred HHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 85 AKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 85 ~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... +.| +++++||+|+..... .+.+.+..+ . ...+++++||++|.|++.|
T Consensus 111 l~~~~~~~p-~ilV~NK~Dl~~~~~------~~~~~~~~~---~-----~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 111 LKPLVGKVP-ILLVGNKLDAAKYPE------EAMKAYHEL---L-----PEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp HGGGTTTSC-EEEEEECGGGCSSHH------HHHHHHHHT---S-----TTSEEEECCTTCHHHHHHH
T ss_pred HHhhcCCCC-EEEEEECcccCCchH------HHHHHHHHh---c-----CcCcEEEEeCCCCCCHHHH
Confidence 5555 788 899999999863211 012222221 1 1357999999999988654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=106.88 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=78.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..... .+.|
T Consensus 31 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 103 (164)
T 1r8s_A 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---NEAREELMRMLAEDELRDAV- 103 (164)
T ss_dssp CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhcCCe-
Confidence 444455567778899999999999999999999999999999999998742 11 111222222222 2567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 104 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 104 LLVFANKQDLPNAMN----AAEITDKL----GLHSLR-HRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECcCCcCCCC----HHHHHHHh----Cccccc-CccEEEEEcccCCCcCHHHHH
Confidence 899999999864211 11222111 111111 125689999999999998753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=107.50 Aligned_cols=117 Identities=23% Similarity=0.278 Sum_probs=80.1
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+...++|.+.....+..++..+.+|||||+.+ +...+..+++.+|++++|+|++++. .........
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~~~ 102 (161)
T 2dyk_A 30 ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL-------TQADYEVAE 102 (161)
T ss_dssp --------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC-------CHHHHHHHH
T ss_pred cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc-------cHhHHHHHH
Confidence 44567888888888888999999999999987 4566778889999999999998754 123334445
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++|+||+|+.... +.+..+. ..++ .+++++||++|.|++++.
T Consensus 103 ~~~~~~~p-~ilv~nK~Dl~~~~----------~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 103 YLRRKGKP-VILVATKVDDPKHE----------LYLGPLY-GLGF-----GDPIPTSSEHARGLEELL 153 (161)
T ss_dssp HHHHHTCC-EEEEEECCCSGGGG----------GGCGGGG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred HHHhcCCC-EEEEEECcccccch----------HhHHHHH-hCCC-----CCeEEEecccCCChHHHH
Confidence 55556788 89999999986321 1111222 2221 278999999999998763
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-17 Score=122.18 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=83.2
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH----------HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP----------NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTR 79 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~----------~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~ 79 (156)
..+|+|++.....+.+.+..+.+|||||+.++.. .+..+ .+.+|++++|+|++.. ....
T Consensus 32 ~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~ 102 (274)
T 3i8s_A 32 NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNL 102 (274)
T ss_dssp ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHH
T ss_pred CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHH
Confidence 4569999999999999999999999999987641 12222 2689999999999762 2344
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.....+...++| +++|+||+|+..........+ .+.+.+ +++++++||++|+|+++|.
T Consensus 103 ~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~-------~l~~~l------g~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 103 YLTLQLLELGIP-CIVALNMLDIAEKQNIRIEID-------ALSARL------GCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HHHHHHHHHTCC-EEEEEECHHHHHHTTEEECHH-------HHHHHH------TSCEEECCCGGGHHHHHHH
T ss_pred HHHHHHHhcCCC-EEEEEECccchhhhhHHHHHH-------HHHHhc------CCCEEEEEcCCCCCHHHHH
Confidence 455566667899 899999999742211111112 222333 3689999999999998764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=112.12 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=77.9
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.+.++.......+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~ 106 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQ---SF---IKARHWVKELHEQAS 106 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChH---HH---HHHHHHHHHHHHhcC
Confidence 34444444444455544 57999999999999999999999999999999998743 11 111111222221
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+.......... .+....+.+.. +++++++||++|.|++++.
T Consensus 107 ~~~p-iilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 107 KDII-IALVGNKIDXLQEGGERKVA---REEGEKLAEEK------GLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp TTCE-EEEEEECGGGGGSSCCCCSC---HHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred CCCc-EEEEEECCCccccccccCCC---HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 3566 89999999985321101000 11122233333 3589999999999998753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-17 Score=112.47 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-----cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-----AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~NK~Dl 102 (156)
....+.+|||||++++...+..+++++|++|+|+|++++... ...........++.. .+.| +++|+||+|+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~---~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR---ANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH---HHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh---HhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhc
Confidence 346799999999999999999999999999999999854310 000111122222322 4677 8999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEeecccCCCCccCC
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDL-SFMPCSGELEKNPLLLG 151 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..+ ++..+++.. ++ +++++||++|+|++++.
T Consensus 148 ~~~~----~~~----~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 148 PDAL----PVE----MVRAVVDPE------GKFPVLEAVATEGKGVFETL 183 (198)
T ss_dssp TTCC----CHH----HHHHHHCTT------CCSCEEECBGGGTBTHHHHH
T ss_pred cccc----CHH----HHHHHHHhc------CCceEEEEecCCCcCHHHHH
Confidence 6431 112 233333333 34 89999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-17 Score=114.70 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=78.0
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVK 91 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 91 (156)
|.+.......+......+.+|||||++++...+..+++.+|++++|+|+++... + ......+..+.. .+.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p 130 (192)
T 2fg5_A 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV 130 (192)
T ss_dssp SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE
T ss_pred ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc
Confidence 444444444444456789999999999999999999999999999999987531 1 111112222222 2567
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ ++..+++.. +++++++||++|.|++++.
T Consensus 131 -iiiv~NK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 131 -MAIAGNKCDLSDIREV--PLK----DAKEYAESI------GAIVVETSAKNAINIEELF 177 (192)
T ss_dssp -EEEEEECGGGGGGCCS--CHH----HHHHHHHTT------TCEEEECBTTTTBSHHHHH
T ss_pred -EEEEEECccccccccc--CHH----HHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 8999999997531110 111 233334433 4689999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-17 Score=110.57 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=72.7
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.| +++++||+|+......
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 138 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV 138 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHH---HHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc
Confidence 467999999999999999999999999999999998743 111112222222222224667 8999999998532111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+ ++..+++.. +++++++||++|.|++++.
T Consensus 139 --~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 139 --TYE----EAKQFAEEN------GLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp --CHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred --CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 112 233334443 4689999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=106.31 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..... .+.|
T Consensus 38 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 110 (171)
T 1upt_A 38 TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD---RI---GISKSELVAMLEEEELRKAI- 110 (171)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT---TH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhchhhCCCE-
Confidence 444555667778999999999999999999999999999999999998753 11 112222222222 3667
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ....+. ..+++++++||++|.|++++.
T Consensus 111 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 111 LVVFANKQDMEQAMT----SSEMANSL----GLPALK-DRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHH----TGGGCT-TSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHHHh----Cchhcc-CCceEEEECcCCCCcCHHHHH
Confidence 899999999864311 12222211 111111 125689999999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-17 Score=110.91 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=78.7
Q ss_pred hcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.++++.......+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~ 115 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQA---SF---ERAKKWVQELQAQGN 115 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSC
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcC
Confidence 3444444444445444 458999999999999999999999999999999997743 11 111222222332
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+...... ..+ ++..+++.. +++++++||++|+|++++.
T Consensus 116 ~~~p-~i~v~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 116 PNMV-MALAGNKSDLLDARKV--TAE----DAQTYAQEN------GLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp TTCE-EEEEEECTTCTTTCCS--CHH----HHHHHHHHT------TCEEEECCSSSCTTHHHHH
T ss_pred CCCc-EEEEEECCcccccccC--CHH----HHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 2566 8999999998532111 111 233333433 4689999999999998753
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=109.27 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=75.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 47 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 119 (187)
T 1zj6_A 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RI---SVTREELYKMLAHEDLRKAG- 119 (187)
T ss_dssp CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT---TH---HHHHHHHHHHHTSGGGTTCE-
T ss_pred CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhchhhCCCe-
Confidence 334455567778899999999999999888899999999999999998753 11 112222222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+ .+....+.. .+++++++||++|+|++++.
T Consensus 120 iilv~NK~Dl~~~~~----~~~i~~----~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 120 LLIFANKQDVKECMT----VAEISQ----FLKLTSIKD-HQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEEEEECTTSTTCCC----HHHHHH----HHTGGGCCS-SCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHH----HhChhhhcC-CCcEEEEccCCCCcCHHHHH
Confidence 899999999864211 122222 221111111 25689999999999998753
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-17 Score=112.29 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++.+|++++|+|+++.. ++. .....+..+.. .+.| +++|+||+|+..
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 141 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE---SFA---AVQDWATQIKTYSWDNAQ-VILVGNKCDLED 141 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGG
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 3468999999999999888999999999999999997743 111 11222222332 3567 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... . ++...+.+.. +++++++||++|.|++++.
T Consensus 142 ~~~~~--~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 142 ERVVP--A----EDGRRLADDL------GFEFFEASAKENINVKQVF 176 (189)
T ss_dssp GCCSC--H----HHHHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred ccCCC--H----HHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 21110 1 1233333444 3589999999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=122.34 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=81.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
+..+|+|.+.....+.+++..+.+|||||++. +...+..+++.+|++++|+|++.+. .......
T Consensus 30 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~-------~~~d~~i 102 (439)
T 1mky_A 30 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI-------TKEDESL 102 (439)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC-------CHHHHHH
T ss_pred cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHH
Confidence 45679999999999999999999999999864 3556788999999999999998875 2344455
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH-HHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI-LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+...+.| +++|+||+|+.. . . .... ..+. .+++ .+++++||++|.|+++|.
T Consensus 103 ~~~l~~~~~p-~ilv~NK~D~~~----~--~---~~~~~~~~~-~lg~-----~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 103 ADFLRKSTVD-TILVANKAENLR----E--F---EREVKPELY-SLGF-----GEPIPVSAEHNINLDTML 157 (439)
T ss_dssp HHHHHHHTCC-EEEEEESCCSHH----H--H---HHHTHHHHG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred HHHHHHcCCC-EEEEEeCCCCcc----c--c---HHHHHHHHH-hcCC-----CCEEEEeccCCCCHHHHH
Confidence 5556667888 899999999641 1 0 1111 2222 3333 257999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=113.50 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=80.2
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|++.......+......+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+......+.| ++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-ii 132 (191)
T 3dz8_A 57 GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWATQIKTYSWDNAQ-VI 132 (191)
T ss_dssp TTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE-EE
T ss_pred eeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCC-EE
Confidence 44455555555556788999999999999999999999999999999998742 222112222222222114667 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+||+|+....... .. +...+.+.. +++++++||++|.|++++.
T Consensus 133 lv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 133 LVGNKCDMEEERVVP--TE----KGQLLAEQL------GFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEECTTCGGGCCSC--HH----HHHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred EEEECCCCccccccC--HH----HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 999999985321111 11 122333333 3589999999999998753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=109.03 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~ 119 (179)
T 2y8e_A 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---SFHQTSKWIDDVRTERGSD 119 (179)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTS
T ss_pred CCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666 57999999999999999999999999999999997642 1211122222222222246
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 120 ~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 120 VI-IMLVGNKTDLSDKRQV--STEE----GERKAKEL------NVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp SE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHH------TCEEEEEBTTTTBSHHHHH
T ss_pred Cc-EEEEEECCcccccCcC--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 77 8999999997532111 1111 22223333 3689999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-17 Score=112.02 Aligned_cols=120 Identities=22% Similarity=0.200 Sum_probs=80.3
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|++++. +|. .....+..+. ..+.|
T Consensus 54 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p- 126 (190)
T 1m2o_B 54 TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE---RFD---EARVELDALFNIAELKDVP- 126 (190)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCC-
T ss_pred CCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH---HHH---HHHHHHHHHHcchhhcCCC-
Confidence 455566778888999999999999999888889999999999999998753 111 1111222221 24677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC------CCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG------FNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+.... . .++ +...++... +.....++++++||++|+|++++.
T Consensus 127 iilv~NK~Dl~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 127 FVILGNKIDAPNAV-S---EAE----LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp EEEEEECTTSTTCC-C---HHH----HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCCcCCC-C---HHH----HHHHhCCccccccccccccceEEEEEeECCcCCCHHHHH
Confidence 89999999986421 1 122 222222111 011135689999999999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-17 Score=113.10 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=76.1
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +|. .....+..+. ..+.|
T Consensus 56 t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p- 128 (198)
T 1f6b_A 56 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE---RLL---ESKEELDSLMTDETIANVP- 128 (198)
T ss_dssp CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTSC-
T ss_pred CCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCcccCCCc-
Confidence 444556677888899999999999999888889999999999999998742 111 1111222221 24678
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcC---------CC--CCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLG---------FN--AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+... .. .++ +...+.... +. ....++++++||++|+|++++.
T Consensus 129 iilv~NK~Dl~~~-~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 129 ILILGNKIDRPEA-IS---EER----LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp EEEEEECTTSTTC-CC---HHH----HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCcccc-CC---HHH----HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 8999999998642 11 122 222222111 00 0124689999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=108.37 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=81.7
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------c
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------~ 88 (156)
..|++.....+.+++..+.+|||||++++...+..+++++|++++|+|+++.. +| ......+..+.. .
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~ 125 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL---RM---VVAKEELDTLLNHPDIKHR 125 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH---HH---HHHHHHHHHHHHSTTTTTS
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH---HH---HHHHHHHHHHHhChhhccC
Confidence 44556666677788899999999999999999999999999999999997742 11 111122222222 3
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+..... .+++++ .+....+.. .+++++++||++|+|++++.
T Consensus 126 ~~p-iilv~nK~Dl~~~~~----~~~~~~----~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 126 RIP-ILFFANKMDLRDAVT----SVKVSQ----LLCLENIKD-KPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp CCC-EEEEEECTTSTTCCC----HHHHHH----HHTGGGCCS-SCEEEEECBTTTTBTHHHHH
T ss_pred CCe-EEEEEeCcCcccCCC----HHHHHH----HhChhhccC-CceEEEEccCCCCcCHHHHH
Confidence 677 899999999864211 122222 221111111 25689999999999998763
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=109.89 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
|.+.......+......+.+|||||++++...+..+++.+|++++|+|+++... +.....+...+......+.| ++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~-ii 115 (170)
T 1z0j_A 40 GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---FSTLKNWVRELRQHGPPSIV-VA 115 (170)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTSE-EE
T ss_pred eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCc-EE
Confidence 333333333333344789999999999999999999999999999999987431 11011111222211123456 88
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++||+|+....... .+....+.+.. +.+++++||++|.|++++.
T Consensus 116 lv~nK~Dl~~~~~v~------~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 116 IAGNKCDLTDVREVM------ERDAKDYADSI------HAIFVETSAKNAININELF 160 (170)
T ss_dssp EEEECTTCGGGCCSC------HHHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred EEEECCccccccccC------HHHHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 999999985321110 11222333333 4689999999999998763
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-17 Score=113.01 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=80.4
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......+
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~ 113 (206)
T 2bcg_Y 37 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE---SFNGVKMWLQEIDRYATST 113 (206)
T ss_dssp CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTT
T ss_pred CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCC
Confidence 345555555555666665 47999999999999888999999999999999998743 1111111122221111234
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 114 ~p-iilv~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 114 VL-KLLVGNKCDLKDKRVV--EYDV----AKEFADAN------KMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp CE-EEEEEECTTCTTTCCS--CHHH----HHHHHHHT------TCCEEECCTTTCTTHHHHH
T ss_pred CC-EEEEEECCCCcccccc--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 66 8999999998642111 1111 22233333 4689999999999998753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=112.41 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=80.2
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--- 87 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+.....
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN---TFKTLDSWRDEFLIQASPRD 114 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSS
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhccccc
Confidence 34555555555565554 67999999999999888889999999999999998743 11111122222222221
Q ss_pred -cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 -AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 -~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... ++ +..+.... ..++++++||++|.|++++.
T Consensus 115 ~~~~p-iilv~nK~Dl~~~~~~~---~~----~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 115 PENFP-FVVLGNKIDLENRQVAT---KR----AQAWCYSK-----NNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp GGGSC-EEEEEECTTSSCCCSCH---HH----HHHHHHHT-----TSCCEEECBTTTTBSHHHHH
T ss_pred CCCCc-EEEEEECCCCcccccCH---HH----HHHHHHhc-----CCceEEEEeCCCCCCHHHHH
Confidence 3677 89999999986322211 11 22222211 25689999999999998753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=108.54 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred eeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEE
Q psy10355 19 EVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLV 94 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 94 (156)
+.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+. ..+.| ++
T Consensus 54 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-ii 126 (181)
T 2h17_A 54 GSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RI---SVTREELYKMLAHEDLRKAG-LL 126 (181)
T ss_dssp SSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT---TH---HHHHHHHHHHHTCGGGTTCE-EE
T ss_pred ceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhChhhCCCe-EE
Confidence 3444566778899999999999999988999999999999999998753 11 11222222222 24567 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+||+|+..... ..++. ..+...... ..+++++++||++|+|++++.
T Consensus 127 lv~NK~Dl~~~~~----~~~i~----~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 127 IFANKQDVKECMT----VAEIS----QFLKLTSIK-DHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEEECTTSTTCCC----HHHHH----HHTTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred EEEECCCcccCCC----HHHHH----HHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 9999999864211 11222 111111111 125689999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=108.10 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|+......+...+..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .+.|
T Consensus 54 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 126 (188)
T 1zd9_A 54 TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE---KI---EASKNELHNLLDKPQLQGIP- 126 (188)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCC-
T ss_pred CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH---HH---HHHHHHHHHHHhCcccCCCC-
Confidence 444445567788999999999999999999999999999999999997742 11 111222222221 4677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 127 iilv~NK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 127 VLVLGNKRDLPGALD----EKELIEKM----NLSAIQ-DREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCccCCC----HHHHHHHh----Chhhhc-cCCeeEEEEECCCCCCHHHHH
Confidence 899999999864211 11111111 111111 135689999999999998753
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-17 Score=109.60 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=73.9
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEE
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVL 96 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv 96 (156)
.....+...+..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .++| ++++
T Consensus 45 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-iilv 117 (170)
T 1r2q_A 45 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---SF---ARAKNWVKELQRQASPNIV-IALS 117 (170)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHSCTTCE-EEEE
T ss_pred EEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEE
Confidence 333333334568999999999999999999999999999999997743 11 111122222222 3566 8899
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+...... ..++ ...+.... +++++++||++|.|++++.
T Consensus 118 ~nK~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 118 GNKADLANKRAV--DFQE----AQSYADDN------SLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred EECccCcccccc--CHHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 999997532111 1111 22333333 4689999999999998753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=107.58 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=73.9
Q ss_pred eeeeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcE
Q psy10355 17 TVEVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHL 93 (156)
Q Consensus 17 t~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (156)
+.......+..++. .+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+... ...+.| +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ 112 (189)
T 4dsu_A 37 IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHHYREQIKRVKDSEDVP-M 112 (189)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-E
T ss_pred chheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-E
Confidence 33344444555554 4788999999999999999999999999999998742 111111122222111 123677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++|+||+|+......... ...+.+.. +++++++||++|.|++++.
T Consensus 113 i~v~nK~Dl~~~~~~~~~-------~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 113 VLVGNKCDLPSRTVDTKQ-------AQDLARSY------GIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEEEECTTSSSCSSCHHH-------HHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred EEEEECccCcccccCHHH-------HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 999999998643322222 22233333 3589999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=110.91 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=77.3
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.|
T Consensus 52 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~l~~i~~~~~~~~p 128 (191)
T 2a5j_A 52 LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLTSWLEDARQHSSSNMV 128 (191)
T ss_dssp --CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE
T ss_pred CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC
Confidence 3344444444555555 58999999999999888889999999999999998743 111111222222211123667
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 129 -iilv~nK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 129 -IMLIGNKSDLESRRDV--KRE----EGEAFAREH------GLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp -EEEEEECTTCGGGCCS--CHH----HHHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred -EEEEEECcccCCcccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 8999999998532111 111 122333333 3589999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=108.44 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=69.8
Q ss_pred hhcCceeeeeeEEEEeC---CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-
Q psy10355 12 REKGKTVEVGRAYFETD---RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT- 87 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~---~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (156)
..++++.+.....+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 113 (182)
T 1ky3_A 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS---SFENIKSWRDEFLVHANV 113 (182)
T ss_dssp C---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHHCC
T ss_pred cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChH---HHHHHHHHHHHHHHHhcc
Confidence 34445555555555554 367999999999999999999999999999999998743 11111222222222221
Q ss_pred ---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++++||+|+....... ..+ +...+.+.. ...+++++||++|+|++++.
T Consensus 114 ~~~~~~p-~ilv~nK~Dl~~~~~~v-~~~----~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 114 NSPETFP-FVILGNKIDAEESKKIV-SEK----SAQELAKSL-----GDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp SCTTTCC-EEEEEECTTSCGGGCCS-CHH----HHHHHHHHT-----TSCCEEEEBTTTTBSHHHHH
T ss_pred cCcCCCc-EEEEEECCccccccccC-CHH----HHHHHHHhc-----CCCeEEEEecCCCCCHHHHH
Confidence 4667 89999999985321100 011 122222322 24689999999999998753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=108.66 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=75.7
Q ss_pred eEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H---HcCCCcEEEEE
Q psy10355 22 RAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K---TAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ivv~ 97 (156)
...+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+ . ..+.| +++++
T Consensus 52 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~ 124 (181)
T 1fzq_A 52 IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK---RF---EETGQELTELLEEEKLSCVP-VLIFA 124 (181)
T ss_dssp EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHTTCGGGTTCC-EEEEE
T ss_pred EEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH---HH---HHHHHHHHHHHhChhhcCCC-EEEEE
Confidence 3456677899999999999999999999999999999999998742 11 1111122211 1 24577 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+..... ..++.+.+ ..... ....++++++||++|+|++++.
T Consensus 125 NK~Dl~~~~~----~~~~~~~~----~~~~~-~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 125 NKQDLLTAAP----ASEIAEGL----NLHTI-RDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp ECTTSTTCCC----HHHHHHHT----TGGGC-CSSCEEEEECCTTTCTTHHHHH
T ss_pred ECcCcccCCC----HHHHHHHh----Cchhc-cCCceEEEEccCCCCCCHHHHH
Confidence 9999864321 12222111 11111 1125689999999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=108.13 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|++++. ++. .....+..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~ 108 (181)
T 3tw8_B 35 SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE---SFV---NVKRWLHEIN 108 (181)
T ss_dssp --CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH---HHH---HHHHHHHHHH
T ss_pred CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHH
Confidence 345566777777777777777 67999999999999888999999999999999998743 111 1111222222
Q ss_pred H--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 87 T--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 87 ~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. .+.| +++|+||+|+....... .. ....+.... +++++++||++|.|++++.
T Consensus 109 ~~~~~~p-~ilv~nK~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 109 QNCDDVC-RILVGNKNDDPERKVVE--TE----DAYKFAGQM------GIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp HHCTTSE-EEEEEECTTCGGGCCSC--HH----HHHHHHHHH------TCCEEECBTTTTBSHHHHH
T ss_pred HhCCCCC-EEEEEECCCCchhcccC--HH----HHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 2 2466 89999999975322111 11 122233333 3589999999999998753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=108.10 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=76.7
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHHHHhhhhcC---CEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPNMIGGTAQA---DLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~~~~~~~~~---d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.|.......+ +..+.+||||| ++.+...+..+++.+ |++++|+|++++. ....
T Consensus 54 ~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~ 123 (195)
T 1svi_A 54 SKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP-------SNDD 123 (195)
T ss_dssp ------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHH
T ss_pred CCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC-------CHHH
Confidence 34566665554433 34799999999 555666677777776 9999999998765 2333
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+..... .....+++...+ +.. ...+++++||++|.|++++.
T Consensus 124 ~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~----~~~~~~~~~~~~---~~~--~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 124 VQMYEFLKYYGIP-VIVIATKADKIPKGK----WDKHAKVVRQTL---NID--PEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp HHHHHHHHHTTCC-EEEEEECGGGSCGGG----HHHHHHHHHHHH---TCC--TTSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHcCCC-EEEEEECcccCChHH----HHHHHHHHHHHH---ccc--CCCceEEEEccCCCCHHHHH
Confidence 4455666667788 899999999864221 222223333222 211 25799999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=111.79 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=67.6
Q ss_pred HhhcCceeeeeeEEEEeC----CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETD----RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~----~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+....+..+.....+.++ ...+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+.
T Consensus 50 ~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~ 123 (208)
T 2yc2_C 50 DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME---SFE---SCKAWFELLK 123 (208)
T ss_dssp -----------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH---HHH---HHHHHHHHHH
T ss_pred CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH---HHH---HHHHHHHHHH
Confidence 333444445556666666 458999999999999999999999999999999998743 111 1112222222
Q ss_pred H------cCCCcEEEEEeCCCCCC-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeeccc-CCCCccCC
Q psy10355 87 T------AGVKHLVVLINKMDDPT-VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGEL-EKNPLLLG 151 (156)
Q Consensus 87 ~------~~~~~~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~-g~gi~~l~ 151 (156)
. .+.| +++|+||+|+.. .... . .+++..+++.. +++++++||++ |.|++++.
T Consensus 124 ~~~~~~~~~~p-iilv~nK~Dl~~~~~~v--~----~~~~~~~~~~~------~~~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 124 SARPDRERPLR-AVLVANKTDLPPQRHQV--R----LDMAQDWATTN------TLDFFDVSANPPGKDADAPF 183 (208)
T ss_dssp HHCSCTTSCCE-EEEEEECC-------CC--C----HHHHHHHHHHT------TCEEEECCC-------CHHH
T ss_pred HhhcccccCCc-EEEEEECcccchhhccC--C----HHHHHHHHHHc------CCEEEEeccCCCCcCHHHHH
Confidence 2 3667 899999999863 1110 0 12233344444 36899999999 99998763
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=117.35 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=83.3
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------HHHhhh--hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------NMIGGT--AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------~~~~~~--~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|++.....+.+++..+.+|||||+.++.. .+..++ .++|++++|+|++.. .+....+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~ 102 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTL 102 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHH
Confidence 4578999999999999999999999999987754 344444 679999999999763 23344445
Q ss_pred HHHHcC-CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAG-VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~-~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+ .| +++++||+|+............ +.+.+ +++++++||++|.|++++.
T Consensus 103 ~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~-------l~~~l------g~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 103 ELFEMEVKN-IILVLNKFDLLKKKGAKIDIKK-------MRKEL------GVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp HHHHTTCCS-EEEEEECHHHHHHHTCCCCHHH-------HHHHH------SSCEEECBGGGTBTHHHHH
T ss_pred HHHhcCCCC-EEEEEEChhcCcccccHHHHHH-------HHHHc------CCcEEEEEeCCCCCHHHHH
Confidence 555566 78 8999999996421111111122 22233 3689999999999987653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=107.56 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 49 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 121 (186)
T 1ksh_A 49 TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ---RM---QDCQRELQSLLVEERLAGAT- 121 (186)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH---HH---HHHHHHHHHHHhChhcCCCc-
Confidence 344445566778999999999999999988999999999999999998743 11 111122222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ..+++++++||++|+|++++.
T Consensus 122 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 122 LLIFANKQDLPGALS----CNAIQEAL----ELDSIR-SHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEeCccCCCCCC----HHHHHHHh----Chhhcc-CCceEEEEeeCCCCCCHHHHH
Confidence 899999999864211 12222211 111011 135689999999999998753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=109.53 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=75.5
Q ss_pred CceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----c
Q psy10355 15 GKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----A 88 (156)
Q Consensus 15 g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (156)
.++.+.....+..+ ...+.+|||||++++...+..+++.+|++++|+|+++.. ++. .....+..+.. .
T Consensus 47 t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~ 120 (195)
T 1x3s_A 47 TIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD---TFV---KLDNWLNELETYCTRN 120 (195)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHTTCCSCS
T ss_pred ccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCcC
Confidence 33333333344443 467999999999999888999999999999999997743 111 11112222222 2
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++|+||+|+....... ++ ...+++.. +++++++||++|.|++++
T Consensus 121 ~~p-~ilv~nK~Dl~~~~~~~---~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 121 DIV-NMLVGNKIDKENREVDR---NE----GLKFARKH------SMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp CCE-EEEEEECTTSSSCCSCH---HH----HHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred CCc-EEEEEECCcCcccccCH---HH----HHHHHHHc------CCEEEEecCCCCCCHHHH
Confidence 456 89999999985322211 11 22333333 468999999999998765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=108.24 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=73.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. +| ......+..+.. .+.|
T Consensus 60 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~---~~~~~~l~~~~~~~~~~~~p- 132 (192)
T 2b6h_A 60 TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---QESADELQKMLQEDELRDAV- 132 (192)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHhcccccCCCe-
Confidence 334445567778899999999999999888999999999999999998742 11 111222222221 2567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ...++++++||++|.|++++.
T Consensus 133 iilv~NK~Dl~~~~~----~~~i~~~~----~~~~~~-~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 133 LLVFANKQDMPNAMP----VSELTDKL----GLQHLR-SRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECCCCCCCCC----HHHHHHHh----Cccccc-CCceEEEECcCCCcCCHHHHH
Confidence 899999999864211 12222111 111111 125689999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=108.69 Aligned_cols=123 Identities=13% Similarity=0.033 Sum_probs=73.5
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+......+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 112 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED---SFQKVKNWVKELRKMLGNEI 112 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHGGGS
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 34445454445555544 47899999999999999999999999999999997743 11111122222222223467
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+...... ..+ +...+.+.. +++++++||++|.|++++.
T Consensus 113 p-iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 113 C-LCIVGNKIDLEKERHV--SIQ----EAESYAESV------GAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp E-EEEEEECGGGGGGCCS--CHH----HHHHHHHHT------TCEEEEEBTTTTBSHHHHH
T ss_pred e-EEEEEECccccccccc--CHH----HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 7 8999999997532111 111 223333443 3689999999999998763
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-16 Score=106.79 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl~~ 104 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..+.. .+.| +++|+||+|+..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ---SF---LNVRNWISQLQMHAYSENPD-IVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHH---HH---HTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 358999999999999999999999999999999997743 11 111222222222 4677 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ..+ .+..+.+.. +++++++||++|.|++++.
T Consensus 142 ~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 176 (195)
T 3bc1_A 142 QRAV--KEE----EARELAEKY------GIPYFETSAANGTNISHAI 176 (195)
T ss_dssp GCCS--CHH----HHHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred cccc--CHH----HHHHHHHHc------CCCEEEEECCCCCCHHHHH
Confidence 2111 111 223333443 3589999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=106.26 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=79.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCC----------CcChHHHHHhhhhcC---CEEEEEEeCCCCccccccCCCcchHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPG----------HKSFVPNMIGGTAQA---DLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG----------~~~~~~~~~~~~~~~---d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.|.|....... .+..+.+||||| ++.+...+..+++.+ |++++|+|++.+. ......
T Consensus 55 ~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~-------~~~~~~ 124 (195)
T 3pqc_A 55 PGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP-------QDSDLM 124 (195)
T ss_dssp CCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHHHH
T ss_pred CCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC-------CHHHHH
Confidence 45554443322 345789999999 444555556666655 8999999997764 234445
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+...+.| +++|+||+|+.... ......+++...+...+ .++++++||++|+|++++.
T Consensus 125 ~~~~~~~~~~p-~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 125 MVEWMKSLNIP-FTIVLTKMDKVKMS----ERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp HHHHHHHTTCC-EEEEEECGGGSCGG----GHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHH
T ss_pred HHHHHHHcCCC-EEEEEEChhcCChH----HHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHH
Confidence 55666777888 89999999986422 23344444555554432 4689999999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=105.74 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=78.4
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... .+.|
T Consensus 36 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~p 111 (168)
T 1z2a_A 36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFEAISSWREKVVAEV-GDIP 111 (168)
T ss_dssp CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHH-CSCC
T ss_pred CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhC-CCCC
Confidence 3444444455555554 57999999999999888889999999999999997743 1111112222221111 4678
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... ..+ ++..+.+.. +++++++||++|.|++++.
T Consensus 112 -iilv~nK~Dl~~~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 112 -TALVQNKIDLLDDSCI--KNE----EAEGLAKRL------KLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp -EEEEEECGGGGGGCSS--CHH----HHHHHHHHH------TCEEEECBTTTTBSSHHHH
T ss_pred -EEEEEECcccCccccc--CHH----HHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 8999999997532111 111 223333443 3589999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-17 Score=119.26 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=79.3
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+|+|++.....+.. +..+.+|||||+.++. ..+..++. .+|++++|+|++.. .........+
T Consensus 34 pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---------e~~~~~~~~l 103 (272)
T 3b1v_A 34 PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---------ERNLYLTTQL 103 (272)
T ss_dssp SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHH
T ss_pred CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---------HhHHHHHHHH
Confidence 58999888888776 7889999999998874 34455555 59999999999762 1223333445
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...++| +++++||+|+......... ...+.+.+ +++++++||++|+|+++|.
T Consensus 104 ~~~~~p-~ilv~NK~Dl~~~~~~~~~-------~~~l~~~l------g~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 104 IETGIP-VTIALNMIDVLDGQGKKIN-------VDKLSYHL------GVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHTCSC-EEEEEECHHHHHHTTCCCC-------HHHHHHHH------TSCEEECBTTTTBSHHHHH
T ss_pred HhcCCC-EEEEEEChhhCCcCCcHHH-------HHHHHHHc------CCCEEEEEccCCCCHHHHH
Confidence 557889 8999999997421111111 12222333 3689999999999998753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=107.01 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++++...+..+++.+|++++|+|++++.. + ......+..+.. .+.| +++|+||+|+.....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~- 164 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQV- 164 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCS-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccC-
Confidence 789999999999999999999999999999999987531 0 111122222222 4556 899999999421111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..++ +..+++.. +++++++||++|.|++++.
T Consensus 165 --~~~~----~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 165 --DILE----VQKYAQDN------NLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp --CHHH----HHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred --CHHH----HHHHHHHc------CCcEEEEecCCCCCHHHHH
Confidence 1222 33334443 4699999999999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=114.35 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=75.2
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. +|.....+...+......+
T Consensus 42 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~---s~~~~~~~l~~i~~~~~~~ 118 (223)
T 3cpj_B 42 SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS---SYENCNHWLSELRENADDN 118 (223)
T ss_dssp -----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH---HHHHHHHHHHHHHHHCC--
T ss_pred CCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCC
Confidence 344555555555666666 68999999999999988999999999999999998743 1111111122221111125
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..+ +...+.+.. +++++++||++|+|++++.
T Consensus 119 ~p-iilv~nK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 119 VA-VGLIGNKSDLAHLRAV--PTE----ESKTFAQEN------QLLFTETSALNSENVDKAF 167 (223)
T ss_dssp CE-EEEEECCGGGGGGCCS--CHH----HHHHHHHHT------TCEEEECCCC-CCCHHHHH
T ss_pred Ce-EEEEEECccccccccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 67 8999999997532111 011 122333333 4689999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=111.39 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=71.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. ++. .....+..+.. .+.| +++|+||+|+..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~---s~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 144 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQ---TYA---VVERWLKELYDHAEATIV-VMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHTTSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEECCCccc
Confidence 4567999999999999989999999999999999997743 111 11122222222 3566 899999999853
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... ... +...+.+.. +++++++||++|+|++++.
T Consensus 145 ~~~~--~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 145 AREV--PTE----EARMFAENN------GLLFLETSALDSTNVELAF 179 (193)
T ss_dssp GCCS--CHH----HHHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred cccc--CHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 2111 111 122333333 4689999999999998753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=106.88 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~ 106 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++|+||+|+....
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~ 130 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---SLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQRE 130 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---HHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccc
Confidence 357999999999999999999999999999999997632 22212222222222221 3578 89999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.... + ...+.... +++++++||++|.|++++.
T Consensus 131 ~~~~---~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 131 VDTR---E----AQAVAQEW------KCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp SCHH---H----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred cCHH---H----HHHHHHHh------CCeEEEEecCCCCCHHHHH
Confidence 2221 1 22223333 3589999999999998753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=108.27 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=78.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 92 (156)
|++.....+..++..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+..... .+.|
T Consensus 53 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 125 (189)
T 2x77_A 53 TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD---RM---GVAKHELYALLDEDELRKSL- 125 (189)
T ss_dssp STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT---TH---HHHHHHHHHHHTCSTTTTCE-
T ss_pred CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH---HH---HHHHHHHHHHHhhhhcCCCe-
Confidence 334445567778999999999999999888888999999999999998753 11 111222222222 3567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ...... ..+++++++||++|+|++++.
T Consensus 126 iilv~nK~Dl~~~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 126 LLIFANKQDLPDAAS----EAEIAEQL----GVSSIM-NRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCCcCCCC----HHHHHHHh----Chhhcc-CCceEEEEccCCCccCHHHHH
Confidence 899999999864311 11222111 111111 125689999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=111.42 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=77.6
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...+......
T Consensus 53 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 129 (200)
T 2o52_A 53 DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNSLAAWLTDARTLASP 129 (200)
T ss_dssp -------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHTCT
T ss_pred cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCC
Confidence 3445555555555666666 68999999999988888888999999999999998743 111111222222222223
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.| +++|+||+|+...... ...+ ...+.+.. +++++++||++|.|++++.
T Consensus 130 ~~p-iilv~nK~Dl~~~~~v--~~~~----~~~~~~~~------~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 130 NIV-VILCGNKKDLDPEREV--TFLE----ASRFAQEN------ELMFLETSALTGENVEEAF 179 (200)
T ss_dssp TCE-EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred CCc-EEEEEECCCccccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 667 8999999997532111 1111 22333333 4689999999999998753
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-16 Score=122.82 Aligned_cols=119 Identities=19% Similarity=0.121 Sum_probs=82.8
Q ss_pred HHHhhcCceeeeeeEEEEeCCe-EEEEEeCCCCcChH-------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDRK-HFTILDAPGHKSFV-------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpG~~~~~-------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..+..+|+|.+.....+.+.+. .+.+|||||+.++. ..+..+++.+|++|+|+|+ +. ......
T Consensus 61 ~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-------~~~~~~ 131 (423)
T 3qq5_A 61 IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-------TPYEDD 131 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-------CHHHHH
T ss_pred ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-------hHHHHH
Confidence 4567889999999999998776 89999999998763 3467788999999999999 32 245566
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...++| +++|+||+|+...... +. ...+.+. .+++++++||++|+|++++.
T Consensus 132 ~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~---~~~l~~~------~g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 132 VVNLFKEMEIP-FVVVVNKIDVLGEKAE-----EL---KGLYESR------YEAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp HHHHHHHTTCC-EEEECCCCTTTTCCCT-----HH---HHHSSCC------TTCCCCCCSSCCTTSTTTHH
T ss_pred HHHHHHhcCCC-EEEEEeCcCCCCccHH-----HH---HHHHHHH------cCCCEEEEECCCCCCHHHHH
Confidence 66777777889 8999999998654322 11 1111111 24689999999999998864
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-16 Score=115.28 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=86.7
Q ss_pred hhcCceeeeeeEEEEe-CCeEEEEEeCCCCcCh-----HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 12 REKGKTVEVGRAYFET-DRKHFTILDAPGHKSF-----VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~-----~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
...|.|++.....+.+ ++..+.+|||||++++ ...+..+++++|++|+|+|+++... |.....+...+..+
T Consensus 33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l 109 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQL 109 (307)
T ss_dssp GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHH
Confidence 4678899988888876 6789999999999988 5667788899999999999987531 11111122222222
Q ss_pred HH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCc
Q psy10355 86 KT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPL 148 (156)
Q Consensus 86 ~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~ 148 (156)
.. .++| +++++||+|+..............+++..+.+..|+. .++++++||++ .|+.
T Consensus 110 ~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 110 RKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLY 169 (307)
T ss_dssp HHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHH
T ss_pred HHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHH
Confidence 22 2677 8999999998642122211123345566666666541 36999999999 5544
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=104.69 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=64.0
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++|+||
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK 135 (190)
T 3con_A 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK---SFADINLYREQIKRVKDSDDVP-MVLVGNK 135 (190)
T ss_dssp EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhCCCCCe-EEEEEEC
Confidence 3455555 45999999999999999999999999999999997743 11111112222222211 3677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+....... + ++..+.+.. +++++++||++|.|++++.
T Consensus 136 ~Dl~~~~~~~---~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 136 CDLPTRTVDT---K----QAHELAKSY------GIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp TTCSCCCSCH---H----HHHHHHHHH------TCCEEECCTTTCTTHHHHH
T ss_pred CcCCcccCCH---H----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 9986422221 1 123333433 3589999999999998753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-16 Score=108.79 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=72.5
Q ss_pred EEEEeC---CeEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-H-----HcCCCc
Q psy10355 23 AYFETD---RKHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-K-----TAGVKH 92 (156)
Q Consensus 23 ~~~~~~---~~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~ 92 (156)
..+.++ +..+.+|||||++++.. .+..+++.+|++++|+|+++.. ..+ ......+... . ..+.|
T Consensus 44 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p- 117 (214)
T 2fh5_B 44 AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--REV---KDVAEFLYQVLIDSMALKNSPS- 117 (214)
T ss_dssp EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHTSTTCCE-
T ss_pred EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--HHH---HHHHHHHHHHHhhhhhcccCCC-
Confidence 335555 67899999999999987 6778899999999999997621 000 0111112111 1 12567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHH---------------H--cC-----CCC---CCCCeEEEeecccC---
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLK---------------K--LG-----FNA---AKDLSFMPCSGELE--- 144 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---------------~--~~-----~~~---~~~~~~i~~Sa~~g--- 144 (156)
+++|+||+|+..........+.+.+.+...-. . .+ |.. ...++++++||++|
T Consensus 118 iilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 89999999986543333223333332221000 0 00 000 01568999999999
Q ss_pred ---CCCccCC
Q psy10355 145 ---KNPLLLG 151 (156)
Q Consensus 145 ---~gi~~l~ 151 (156)
+|++++.
T Consensus 198 ~~~~gv~~lf 207 (214)
T 2fh5_B 198 TGSADIQDLE 207 (214)
T ss_dssp --CCBCHHHH
T ss_pred ccccChHHHH
Confidence 9998763
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=102.59 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=72.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||+.++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||+
T Consensus 43 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~ 118 (166)
T 2ce2_X 43 QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHQYREQIKRVKDSDDVP-MVLVGNKS 118 (166)
T ss_dssp EEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred EEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEch
Confidence 344444 56899999999999989999999999999999997642 11111112222221111 2678 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+........ ....+.+.. +++++++||++|.|++++.
T Consensus 119 Dl~~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 119 DLAARTVESR-------QAQDLARSY------GIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp TCSCCCSCHH-------HHHHHHHHH------TCCEEEECTTTCTTHHHHH
T ss_pred hhhhcccCHH-------HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 9864322221 122333333 3589999999999998753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=103.37 Aligned_cols=117 Identities=17% Similarity=0.103 Sum_probs=68.5
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcC--hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKS--FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~--~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (156)
.|.+.... .+..++ ..+.+|||||+.. +......+++.+|++++|+|+++.. +|. .....+..+..
T Consensus 36 ~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~ 107 (175)
T 2nzj_A 36 LGEDVYER--TLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---SFE---SASELRIQLRRTH 107 (175)
T ss_dssp SSSSEEEE--EEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---HHH---HHHHHHHHHHHCC
T ss_pred cccceeEE--EEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhh
Confidence 44444333 334444 5789999999987 4556677888999999999997632 111 11122222332
Q ss_pred --cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 --AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.| +++|+||+|+....... .++ ...+.... +++++++||++|+|++++.
T Consensus 108 ~~~~~p-iilv~NK~Dl~~~~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 108 QADHVP-IILVGNKADLARCREVS--VEE----GRACAVVF------DCKFIETSATLQHNVAELF 160 (175)
T ss_dssp ----CC-EEEEEECTTCTTTCCSC--HHH----HHHHHHHH------TSEEEECBTTTTBSHHHHH
T ss_pred ccCCCC-EEEEEEChhhccccccC--HHH----HHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 2678 89999999986421111 111 22222333 3589999999999998763
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=107.15 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=78.0
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChH-HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-Hc
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFV-PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TA 88 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~-~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (156)
.+.++.+.....+..++ ..+.+|||||++++. ..+..+++.+|++++|+|+++.. +|.....+...+.... ..
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~ 126 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLAN 126 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCS
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCC
Confidence 34444455555566655 689999999999988 77888999999999999998742 1111122222222111 24
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC---CCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE---KNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g---~gi~~l 150 (156)
+.| +++|+||+|+....... . +....+.+.. +++++++||++| +|++++
T Consensus 127 ~~p-iilv~nK~Dl~~~~~v~--~----~~~~~~~~~~------~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 127 DIP-RILVGNKCDLRSAIQVP--T----DLAQKFADTH------SMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CCC-EEEEEECTTCGGGCCSC--H----HHHHHHHHHT------TCCEEECCSSSGGGGSCHHHH
T ss_pred CCC-EEEEEECccccccceeC--H----HHHHHHHHHc------CCEEEEEeCCcCCcccCHHHH
Confidence 677 89999999985321111 1 1122333333 458999999999 887654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=106.82 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|++.....+.+++..+.+|||||++++...+..+++.+|++++|+|+++.. ++ ......+.... ..+.|
T Consensus 49 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 121 (183)
T 1moz_A 49 TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD---RM---STASKELHLMLQEEELQDAA- 121 (183)
T ss_dssp STTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT---TH---HHHHHHHHHHTTSSTTSSCE-
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHcChhhCCCe-
Confidence 334445566778899999999999999888899999999999999997753 11 11222222222 24567
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++++||+|+..... ..+ +...+...... ...++++++||++|+|++++.
T Consensus 122 iilv~nK~Dl~~~~~----~~~----i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 122 LLVFANKQDQPGALS----ASE----VSKELNLVELK-DRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EEEEEECTTSTTCCC----HHH----HHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHH
T ss_pred EEEEEECCCCCCCCC----HHH----HHHHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 899999999864211 122 22211111111 124689999999999998753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=105.99 Aligned_cols=131 Identities=15% Similarity=0.026 Sum_probs=77.8
Q ss_pred hcCceeeeeeEEEEe---CCeEEEEEeCCCCcChHHHH---HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-
Q psy10355 13 EKGKTVEVGRAYFET---DRKHFTILDAPGHKSFVPNM---IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA- 85 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~---~~~~~~iiDtpG~~~~~~~~---~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~- 85 (156)
..|++.......... ....+.+|||||+++|.... ..+++++|++|+|+|+++.. ... ...+...+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~---~~~~~~~l~~~~ 124 (196)
T 3llu_A 49 TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEA---LTRLHITVSKAY 124 (196)
T ss_dssp GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHH---HHHHHHHHHHHH
T ss_pred eeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCch-HHH---HHHHHHHHHHHH
Confidence 334444444444443 44789999999999987776 78999999999999998752 111 01122222222
Q ss_pred -HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 86 -KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 86 -~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+.| +++|+||+|+............+.......+...... ..+++++++||++ +|++++
T Consensus 125 ~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 125 KVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp HHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHH
T ss_pred hcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHH
Confidence 123667 8999999998642211111122222222222221111 1257899999999 998765
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=101.61 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK 118 (168)
T 1u8z_A 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNK 118 (168)
T ss_dssp EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTSC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEC
Confidence 3444554 57999999999999999999999999999999998642 11111112222221111 3677 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+...... ..++ ...+++.. +++++++||++|.|++++.
T Consensus 119 ~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 119 SDLEDKRQV--SVEE----AKNRADQW------NVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp GGGGGGCCS--CHHH----HHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred ccccccCcc--CHHH----HHHHHHHc------CCeEEEeCCCCCCCHHHHH
Confidence 997532111 1122 23333333 3589999999999998753
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=110.97 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=80.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCc
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKH 92 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (156)
..|++.......+...+..+.+|||||++++...+..+++++|++++|+|+++.. +|.....+...+... ..++|
T Consensus 47 t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~p- 121 (221)
T 3gj0_A 47 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV---TYKNVPNWHRDLVRV-CENIP- 121 (221)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHH-STTCC-
T ss_pred ccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-CCCCC-
Confidence 3456666666655556678999999999999888889999999999999998743 121111222222111 12678
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+........ ...+.+.. +++++++||++|.|++++.
T Consensus 122 ~ilv~nK~Dl~~~~~~~~--------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 122 IVLCGNKVDIKDRKVKAK--------SIVFHRKK------NLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEECTTSSSCSSCGG--------GCCHHHHH------TCEEEECBGGGTBTTTHHH
T ss_pred EEEEEECCccccccccHH--------HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 899999999864322111 11222222 4689999999999998753
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=104.18 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=74.9
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+|
T Consensus 52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 127 (206)
T 2bov_A 52 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGN 127 (206)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEe
Confidence 34455555 47999999999999999999999999999999997632 1111111212211111 13677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+...... ..++ +..+.+.. +++++++||++|.|++++.
T Consensus 128 K~Dl~~~~~~--~~~~----~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 128 KSDLEDKRQV--SVEE----AKNRAEQW------NVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp CTTCGGGCCS--CHHH----HHHHHHHH------TCEEEEECTTTCTTHHHHH
T ss_pred ccCccccccc--cHHH----HHHHHHHh------CCeEEEEeCCCCCCHHHHH
Confidence 9998532111 1122 23333333 3589999999999998753
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-16 Score=110.32 Aligned_cols=106 Identities=17% Similarity=0.054 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+|||||++++...+..+++.+|++++|+|++++. ++.....+...+......+.| +++|+||+|+......
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~- 135 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI---TCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI- 135 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C-
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc-
Confidence 67999999999998888888999999999999998753 221122333333333334678 8999999998632110
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+....+.+. .+++++++||++|.|++++.
T Consensus 136 -----~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 136 -----SKKLVMEVLKG------KNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp -----CHHHHHHHTTT------CCCEEEEEBTTTTBTTTHHH
T ss_pred -----CHHHHHHHHHH------cCCcEEEEecCCCCCHHHHH
Confidence 11112222222 25689999999999998763
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-16 Score=108.39 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=77.0
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCC
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGV 90 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 90 (156)
++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.
T Consensus 62 t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~ 135 (204)
T 4gzl_A 62 TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFE---NVRAKWYPEVRHHCPNT 135 (204)
T ss_dssp CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCSSC
T ss_pred eecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCC
Confidence 33344444445554 45669999999999999999999999999999998743 111 111 11222222 267
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+...........+ ..++...+.+..+ ..+++++||++|+|++++.
T Consensus 136 p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 136 P-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVF 196 (204)
T ss_dssp C-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred C-EEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC-----CcEEEEeeCCCCCCHHHHH
Confidence 8 8999999997643211111100 0112333444443 2479999999999998763
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=102.98 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... ..+.| +++++||+|+.....
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERV 125 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCC
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccccccc
Confidence 457999999999999999999999999999999997732 1211122222222221 23677 899999999853211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+ +...+.+.. .+.+++++||++|.|++++.
T Consensus 126 ~--~~~----~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 158 (167)
T 1c1y_A 126 V--GKE----QGQNLARQW-----CNCAFLESSAKSKINVNEIF 158 (167)
T ss_dssp S--CHH----HHHHHHHHT-----TSCEEEECBTTTTBSHHHHH
T ss_pred C--CHH----HHHHHHHHc-----cCCcEEEecCCCCCCHHHHH
Confidence 1 111 222333333 14689999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-16 Score=106.34 Aligned_cols=117 Identities=23% Similarity=0.208 Sum_probs=80.4
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH------HHHHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV------PNMIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~------~~~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+|+|.+.....+.+++..+.+|||||+.++. ..+..+++ .+|++++|+|++.. ......+.
T Consensus 36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~ 106 (188)
T 2wjg_A 36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTL 106 (188)
T ss_dssp ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHH
Confidence 346888888888889999999999999998873 33445554 49999999998652 22333334
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+...+.| +++++||+|+....... .....+.+.. +++++++||++|.|++++.
T Consensus 107 ~~~~~~~p-iilv~nK~Dl~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 107 QLMEMGAN-LLLALNKMDLAKSLGIE-------IDVDKLEKIL------GVKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HHHTTTCC-EEEEEECHHHHHHTTCC-------CCHHHHHHHH------TSCEEECBGGGTBSHHHHH
T ss_pred HHHhcCCC-EEEEEEhhhccccccch-------HHHHHHHHHh------CCCeEEEEecCCCCHHHHH
Confidence 44456778 89999999964211100 1122223333 3589999999999998753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=104.06 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=74.8
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHHc--CCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKTA--GVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|. ... ..+..+... +.| +++|+|
T Consensus 58 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~n 130 (194)
T 2atx_A 58 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQ---NVKEEWVPELKEYAPNVP-FLLIGT 130 (194)
T ss_dssp EEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEE
Confidence 445554 67999999999999988999999999999999997743 111 111 112222222 678 899999
Q ss_pred CCCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+.........+. ...++...+.+..++ .+++++||++|+|++++.
T Consensus 131 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVF 184 (194)
T ss_dssp CTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHH
T ss_pred ChhhcccccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHH
Confidence 999864211000000 001223334444432 489999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=105.86 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=77.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCC------cCh---HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGH------KSF---VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~------~~~---~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.+.....+..++..+.+|||||+ ++. ...+..++..+|++|+|+|+++.. +|. ...+...+.
T Consensus 59 ~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~-~~~~~~~~~ 134 (228)
T 2qu8_A 59 YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQC---GLT-IKEQINLFY 134 (228)
T ss_dssp C-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTT---SSC-HHHHHHHHH
T ss_pred CCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccccc---Ccc-hHHHHHHHH
Confidence 3456777777777788899999999999 331 122334567889999999998753 111 112233444
Q ss_pred HHHHc--CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTA--GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+... +.| +++|+||+|+....... ....+.+..+.+..+ ..++++++||++|+|++++.
T Consensus 135 ~l~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 135 SIKSVFSNKS-IVIGFNKIDKCNMDSLS---IDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp HHHTCC-CCC-EEEEEECGGGCC--CCC---HHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHH
T ss_pred HHHHhhcCCc-EEEEEeCcccCCchhhH---HHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHH
Confidence 44443 678 89999999986422111 111223334444332 12689999999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-16 Score=104.67 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred ceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCC
Q psy10355 16 KTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (156)
.+.+.....+..++ ..+.+|||||++++.. .+..+++.+|++++|+|+++.. +|.....+...+.... ..+.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p 111 (169)
T 3q85_A 35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---SFSKVPETLLRLRAGRPHHDLP 111 (169)
T ss_dssp ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSTTSCCC
T ss_pred CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---HHHHHHHHHHHHHhcccCCCCC
Confidence 34444555555555 5788999999998876 5666788999999999998732 2221122222111111 12678
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+...... .. ++...+.+.. +++++++||++|+|++++.
T Consensus 112 -~ilv~nK~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 112 -VILVGNKSDLARSREV--SL----EEGRHLAGTL------SCKHIETSAALHHNTRELF 158 (169)
T ss_dssp -EEEEEECTTCGGGCCS--CH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred -EEEEeeCcchhhcccC--CH----HHHHHHHHHc------CCcEEEecCccCCCHHHHH
Confidence 8999999998532111 11 1223333443 4689999999999998753
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=114.04 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=75.9
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HH---cCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KT---AGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~ 92 (156)
|++.....+...+..+.||||||+++|...+..+++.+|++|+|+|+++.. +| ......+..+ .. .++|
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~---s~---~~~~~~~~~~~~~~~~~~~p- 268 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RV---NEAREELMRMLAEDELRDAV- 268 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS---SH---HHHHHHHHHHHTCGGGTTCE-
T ss_pred ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH---HH---HHHHHHHHHHHhhhccCCCe-
Confidence 555666777888999999999999999999999999999999999997643 11 1111222222 21 2667
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+||+|+..... ..++.+.+ ..... ...+++++++||++|+|+++|.
T Consensus 269 iilV~NK~Dl~~~~~----~~~i~~~~----~~~~~-~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 269 LLVFANKQDLPNAMN----AAEITDKL----GLHSL-RHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHH----TCTTC-CSSCEEEEECBTTTTBTHHHHH
T ss_pred EEEEEECccCCcccC----HHHHHHHh----chhhh-hcCCCEEEEEECCCCcCHHHHH
Confidence 899999999864321 12222222 11111 1135789999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=103.71 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=73.9
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+ ......+.| +++|+||
T Consensus 48 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iilv~nK 123 (181)
T 2fn4_A 48 KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---SFNEVGKLFTQILRVKDRDDFP-VVLVGNK 123 (181)
T ss_dssp EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTSSCCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEC
Confidence 4455555 57899999999999888899999999999999998742 111111122222 222234678 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+....... .. +...+.... +++++++||++|.|++++.
T Consensus 124 ~Dl~~~~~v~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 124 ADLESQRQVP--RS----EASAFGASH------HVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp GGGGGGCCSC--HH----HHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred cccccccccC--HH----HHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 9975321110 11 122223333 4689999999999998753
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=101.97 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCCCCCCcch
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~Dl~~~~~ 107 (156)
..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+..... .+.| +++++||+|+.....
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ---SLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSRE 126 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH---HHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccc
Confidence 57999999999999999999999999999999998642 12111222222222211 3678 899999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. ..+ ...+.... +++++++||++|.|++++.
T Consensus 127 v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 127 VQ--SSE----AEALARTW------KCAFMETSAKLNHNVKELF 158 (172)
T ss_dssp SC--HHH----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred cC--HHH----HHHHHHHh------CCeEEEecCCCCcCHHHHH
Confidence 11 111 22222333 3589999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=100.91 Aligned_cols=105 Identities=18% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl~ 103 (156)
....+.+|||||++++...+..+++.+|++++|+|+++.. +|. .....+..+.. .+.| +++|+||+|+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---SFE---KASELRVQLRRARQTDDVP-IILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHH---HHH---HHHHHHHHHHHCC---CCC-EEEEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEeccccc
Confidence 4467999999999999999999999999999999998642 111 11122222222 3678 89999999986
Q ss_pred CcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 104 TVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...... .++ ...+.... +++++++||++|+|++++.
T Consensus 120 ~~~~~~--~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 120 RSREVS--VDE----GRACAVVF------DCKFIETSAALHHNVQALF 155 (166)
T ss_dssp SSCCSC--HHH----HHHHHHHT------TCEEEECBGGGTBSHHHHH
T ss_pred cccccC--HHH----HHHHHHHh------CCcEEEeccCCCCCHHHHH
Confidence 432111 111 22222333 4699999999999998763
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=101.94 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=75.0
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+.... ..+.| +++|+|
T Consensus 56 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 131 (187)
T 2a9k_A 56 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGN 131 (187)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 33445555 47999999999999999999999999999999997632 1111112222222221 13677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..... ....+ +..+++.. +++++++||++|.|++++.
T Consensus 132 K~Dl~~~~~--~~~~~----~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 132 KSDLEDKRQ--VSVEE----AKNRAEQW------NVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp CGGGGGGCC--SCHHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred CccccccCc--cCHHH----HHHHHHHc------CCeEEEeCCCCCCCHHHHH
Confidence 999753211 11122 33333443 4689999999999998753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=112.27 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=82.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc-C--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK-S--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.......+..++.++.+|||||++ + +...+..+++.+|++++|+|++. . .......+.
T Consensus 39 ~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~-------~~~~~~i~~ 110 (301)
T 1ega_A 39 KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W-------TPDDEMVLN 110 (301)
T ss_dssp CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C-------CHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C-------CHHHHHHHH
Confidence 45667766666778889999999999997 3 23334667788999999999976 4 345556666
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+...+.| .++++||+|+... . ..+.+.+..+.+..++ .+++++||++|.|++.|
T Consensus 111 ~l~~~~~P-~ilvlNK~D~~~~---~---~~~~~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 111 KLREGKAP-VILAVNKVDNVQE---K---ADLLPHLQFLASQMNF-----LDIVPISAETGLNVDTI 165 (301)
T ss_dssp HHHSSSSC-EEEEEESTTTCCC---H---HHHHHHHHHHHTTSCC-----SEEEECCTTTTTTHHHH
T ss_pred HHHhcCCC-EEEEEECcccCcc---H---HHHHHHHHHHHHhcCc-----CceEEEECCCCCCHHHH
Confidence 66656788 7999999997631 1 1222333333333332 37899999999998865
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=104.31 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=72.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++ .... ..+..+.. .+.| +++|+|
T Consensus 45 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iilv~n 117 (186)
T 1mh1_A 45 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA---SF---ENVRAKWYPEVRHHCPNTP-IILVGT 117 (186)
T ss_dssp EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HH---HHHHHTHHHHHHHHSTTSC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHHHhCCCCC-EEEEeE
Confidence 344444 45779999999999888888999999999999998743 11 1111 11222222 2678 899999
Q ss_pred CCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+.........+.+ ..++...+.+..+ .++++++||++|.|++++.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred cccccccchhhhhhcccccccCCHHHHHHHHHhcC-----CcEEEEecCCCccCHHHHH
Confidence 9997532111110000 0112233334432 2489999999999998753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=101.41 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=73.3
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++.....+...+ ......+.| +++|+|
T Consensus 41 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~n 116 (167)
T 1kao_A 41 RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGN 116 (167)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 33444554 45999999999999999999999999999999998742 111011111111 111123677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+....... .. +...+.+.. +++++++||++|.|++++.
T Consensus 117 K~Dl~~~~~~~--~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 117 KVDLESEREVS--SS----EGRALAEEW------GCPFMETSAKSKTMVDELF 157 (167)
T ss_dssp CGGGGGGCCSC--HH----HHHHHHHHH------TSCEEEECTTCHHHHHHHH
T ss_pred CCcccccccCC--HH----HHHHHHHHh------CCCEEEecCCCCcCHHHHH
Confidence 99975321110 11 122333333 3589999999999988753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=104.27 Aligned_cols=122 Identities=13% Similarity=0.020 Sum_probs=76.9
Q ss_pred cCceeeeeeEEEEeCC--eEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cC
Q psy10355 14 KGKTVEVGRAYFETDR--KHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AG 89 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (156)
++++.+.....+..++ ..+.+|||||+.++.. .+..+++.+|++++|+|+++.. +|.....+...+..... .+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~ 130 (195)
T 3cbq_A 54 PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---SFSKVPETLLRLRAGRPHHD 130 (195)
T ss_dssp TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSTTSC
T ss_pred CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 4455555555566665 4688999999988765 6677789999999999998632 22212222222111111 36
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.| +++|+||+|+...... ..++ ...+.+.. +++++++||++|.|++++.
T Consensus 131 ~p-iilv~nK~Dl~~~~~v--~~~~----~~~~a~~~------~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 131 LP-VILVGNKSDLARSREV--SLEE----GRHLAGTL------SCKHIETSAALHHNTRELF 179 (195)
T ss_dssp CC-EEEEEECTTCTTTCCS--CHHH----HHHHHHHT------TCEEEEEBTTTTBSHHHHH
T ss_pred CC-EEEEeechhccccCCc--CHHH----HHHHHHHh------CCEEEEEcCCCCCCHHHHH
Confidence 77 8999999998632111 1112 22233333 3589999999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-16 Score=122.15 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=75.3
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCc--------ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHK--------SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~--------~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
+..+|+|.+.....+.+.+..+.+|||||+. .+...+..+++.+|++++|+|+..+. .....+..
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~-------~~~d~~~~ 104 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV-------TAADEEVA 104 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHH
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHH
Confidence 4567999999999999999999999999996 56777888999999999999998876 24445555
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+...+.| +++|+||+|+.... .....+. .+++ -+++++||++|.|+++|.
T Consensus 105 ~~l~~~~~p-vilv~NK~D~~~~~----------~~~~~~~-~lg~-----~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 105 KILYRTKKP-VVLAVNKLDNTEMR----------ANIYDFY-SLGF-----GEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HHHTTCCSC-EEEEEECCCC---------------CCCSSG-GGSS-----CCCEECBTTTTBTHHHHH
T ss_pred HHHHHcCCC-EEEEEECccCccch----------hhHHHHH-HcCC-----CCeEEEeCcCCCChHHHH
Confidence 556667888 89999999975210 0011111 2222 267999999999987753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-15 Score=101.39 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=75.0
Q ss_pred eEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH-HHHcCCCcEEEEEe
Q psy10355 22 RAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML-AKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~N 98 (156)
...+..++. .+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+.. ....+.| +++|+|
T Consensus 56 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~n 131 (183)
T 3kkq_A 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVAN 131 (183)
T ss_dssp EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEE
T ss_pred EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEE
Confidence 344445554 4667999999999988999999999999999998742 22212223222222 2235677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
|+|+....... .+ +...+.+.. +++++++||+ +|+|++++.
T Consensus 132 K~Dl~~~~~v~--~~----~~~~~~~~~------~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 132 KVDLMHLRKVT--RD----QGKEMATKY------NIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp CTTCSTTCCSC--HH----HHHHHHHHH------TCCEEEEBCSSSCBSHHHHH
T ss_pred CCCchhccCcC--HH----HHHHHHHHh------CCeEEEeccCCCCCCHHHHH
Confidence 99985321111 11 233333444 3589999999 999998753
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=117.75 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
....+|+|.+.....+..++..+.+|||||++++.. .+..+++.+|++++|+|++++.. +.....+...
T Consensus 261 vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s---~~~~~~~~~~ 337 (476)
T 3gee_A 261 VSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL---DDELTEIREL 337 (476)
T ss_dssp ------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS---GGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc---hhhhHHHHHH
Confidence 345679999999999999999999999999977643 34557889999999999988651 0000022222
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+ .+.| +++|+||+|+...... .. +++.. .+ ..+++++||++|+|+++|.
T Consensus 338 l~~l--~~~p-iIvV~NK~Dl~~~~~~----~~--~~l~~----~~-----~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 338 KAAH--PAAK-FLTVANKLDRAANADA----LI--RAIAD----GT-----GTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp HHHC--TTSE-EEEEEECTTSCTTTHH----HH--HHHHH----HH-----TSCEEECBTTTTBSHHHHH
T ss_pred HHhc--CCCC-EEEEEECcCCCCccch----hH--HHHHh----cC-----CCceEEEEECCCCCHHHHH
Confidence 2222 2567 8999999998643211 11 11211 11 1488999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=104.13 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+.+++..+.+|||||++++. .....+++.+|++++|+|+++... + .....+..
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~----~~~~~~~~ 107 (172)
T 2gj8_A 35 IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA---V----DPAEIWPE 107 (172)
T ss_dssp STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC---C----SHHHHCHH
T ss_pred CCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC---H----HHHHHHHH
Confidence 45778887778888889999999999997531 123456899999999999987541 1 12222222
Q ss_pred HHH---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. .++| +++|+||+|+...... +......+++++||++|+|+++|.
T Consensus 108 ~~~~~~~~~p-~ilv~NK~Dl~~~~~~-------------------~~~~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 108 FIARLPAKLP-ITVVRNKADITGETLG-------------------MSEVNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp HHHHSCTTCC-EEEEEECHHHHCCCCE-------------------EEEETTEEEEECCTTTCTTHHHHH
T ss_pred HHHhcccCCC-EEEEEECccCCcchhh-------------------hhhccCCceEEEeCCCCCCHHHHH
Confidence 222 3578 8999999997421000 000024689999999999998764
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=116.50 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=83.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCc-ChH--------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHK-SFV--------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~-~~~--------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.+|+|.+.....+.+++..+.+|||||++ ++. ..+..+++.+|++|+|+|++++. ..+..+.+.
T Consensus 274 ~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~il~ 346 (482)
T 1xzp_A 274 IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPL-------DEEDRKILE 346 (482)
T ss_dssp SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCC-------CHHHHHHHH
T ss_pred CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCC-------CHHHHHHHH
Confidence 46899999999999999999999999998 542 45677889999999999998764 122333333
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+ .+.| +++|+||+|+... .. .++ +..++ + ...+++++||++|+|+++|.
T Consensus 347 ~l--~~~p-iivV~NK~DL~~~-~~---~~~----~~~~~---~----~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 347 RI--KNKR-YLVVINKVDVVEK-IN---EEE----IKNKL---G----TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp HH--TTSS-EEEEEEECSSCCC-CC---HHH----HHHHH---T----CSTTEEEEEGGGTCCHHHHH
T ss_pred Hh--cCCC-EEEEEECcccccc-cC---HHH----HHHHh---c----CCCcEEEEECCCCCCHHHHH
Confidence 33 3677 8999999998632 11 122 22221 1 13589999999999998764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-17 Score=116.65 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+..++++.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|+++... |. .....+..+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~ 132 (199)
T 3l0i_B 59 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQEID 132 (199)
T ss_dssp CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---HH---HHHHHHHHHH
T ss_pred CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHH
Confidence 344555666666666677766 579999999999998888899999999999999987531 11 1111222222
Q ss_pred H---cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 T---AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. .+.| +++|+||+|+........ +....+.+.. +++++++||++|.|++++
T Consensus 133 ~~~~~~~p-~ilv~nK~Dl~~~~~v~~------~~~~~~~~~~------~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 133 RYASENVN-KLLVGNKCDLTTKKVVDY------TTAKEFADSL------GIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SCC-CCSE-EEEC-CCSSCC--CCCCS------CC-CHHHHTT------TCCBCCCCC---HHHHHH
T ss_pred HhccCCCC-EEEEEECccCCccccCCH------HHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 2 2567 899999999853211100 1122223333 468999999999998875
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=104.29 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=72.7
Q ss_pred eEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHHcCCCcEEEEEe
Q psy10355 22 RAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKTAGVKHLVVLIN 98 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~N 98 (156)
...+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+ ......+.| +++|+|
T Consensus 44 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~n 119 (181)
T 3t5g_A 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGN 119 (181)
T ss_dssp EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 34445555 56899999999999888889999999999999998732 111111122111 222234678 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+|+...... .. ++...+.+.. +++++++||++|+|++++
T Consensus 120 K~Dl~~~~~~--~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 120 KKDLHMERVI--SY----EEGKALAESW------NAAFLESSAKENQTAVDV 159 (181)
T ss_dssp CTTCTTTCCS--CH----HHHHHHHHHT------TCEEEECCTTSHHHHHHH
T ss_pred Cccchhccee--cH----HHHHHHHHHh------CCcEEEEecCCCCCHHHH
Confidence 9998532111 11 1233334444 458999999999998765
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=103.52 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=73.2
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|... ..+...+.. ...+.| +++|+||+
T Consensus 63 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p-~ilv~nK~ 137 (194)
T 3reg_A 63 VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT---SFDNISTKWEPEIKH-YIDTAK-TVLVGLKV 137 (194)
T ss_dssp EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHH-HCTTSE-EEEEEECG
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH---HHHHHHHHHHHHHHH-hCCCCC-EEEEEECh
Confidence 344444 45799999999999999999999999999999998743 11110 112222221 112567 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+......... .++...+.+..++ .+++++||++|+|++++.
T Consensus 138 Dl~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 138 DLRKDGSDDVT----KQEGDDLCQKLGC-----VAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp GGCCTTTTCCC----HHHHHHHHHHHTC-----SCEEECBTTTTBSHHHHH
T ss_pred hhccCCCCccc----HHHHHHHHHhcCC-----CEEEEeecCCCCCHHHHH
Confidence 98632111111 1223334444443 239999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=104.68 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=70.4
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-------cCCCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-------AGVKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~NK~D 101 (156)
...+.||||||++++...+..+++.+|++|+|+|+++.. .......++.. .+.| +++|+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---------s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ---------SFLNVRNWMSQLQANAYCENPD-IVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH---------HHHHHHHHHHTCCCCCTTTCCE-EEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH---------HHHHHHHHHHHHHHhcCcCCCC-EEEEEECCc
Confidence 567999999999999999999999999999999997743 11111122221 3456 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...... . .+++..+.+.. +++++++||++|.|++++.
T Consensus 153 l~~~~~v--~----~~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 190 (217)
T 2f7s_A 153 LPDQREV--N----ERQARELADKY------GIPYFETSAATGQNVEKAV 190 (217)
T ss_dssp CGGGCCS--C----HHHHHHHHHHT------TCCEEEEBTTTTBTHHHHH
T ss_pred ccccccc--C----HHHHHHHHHHC------CCcEEEEECCCCCCHHHHH
Confidence 8532111 0 11233334443 3589999999999998753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=105.57 Aligned_cols=116 Identities=11% Similarity=0.166 Sum_probs=73.8
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH--cCCCcEEEEEeCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT--AGVKHLVVLINKM 100 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~NK~ 100 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. ++... .......+.. .+.| +++|+||+
T Consensus 66 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-iilv~nK~ 139 (201)
T 2gco_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENI--PEKWTPEVKHFCPNVP-IILVGNKK 139 (201)
T ss_dssp EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHH--HHTHHHHHHHHSTTCC-EEEEEECG
T ss_pred EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH---HHHHH--HHHHHHHHHHhCCCCC-EEEEEecH
Confidence 44554 57999999999999888889999999999999997642 11100 0111222222 2678 89999999
Q ss_pred CCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 101 DDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 101 Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+.........+.. ..++...+.+..+ ..+++++||++|+|++++.
T Consensus 140 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS-----AFGYLECSAKTKEGVREVF 191 (201)
T ss_dssp GGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred HhhcCccchhhhcccccCcCCHHHHHHHHHhCC-----CcEEEEeeCCCCCCHHHHH
Confidence 98643211111100 0112333444443 2389999999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-15 Score=103.65 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=75.0
Q ss_pred eeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEE
Q psy10355 19 EVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 19 ~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv 95 (156)
+.....+..++. .+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+... ..+.| +++
T Consensus 55 ~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~-~~~~p-~il 129 (201)
T 2q3h_A 55 DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS---SFQNVSEKWVPEIRCH-CPKAP-IIL 129 (201)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CSSSC-EEE
T ss_pred ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHHh-CCCCC-EEE
Confidence 333445556664 6779999999999888888999999999999998743 111000 111111111 12678 899
Q ss_pred EEeCCCCCCcchhHHHH------HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARY------NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+||+|+.........+ ....++...+.+..+ .++++++||++|.|++++.
T Consensus 130 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~ 186 (201)
T 2q3h_A 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK-----AASYIECSALTQKNLKEVF 186 (201)
T ss_dssp EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCTTHHHHH
T ss_pred EEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC-----CcEEEEEecCCCCCHHHHH
Confidence 99999985321000000 000112333334443 2489999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-16 Score=105.67 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEeCCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLINKMDDPT 104 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~NK~Dl~~ 104 (156)
....+.+|||||++++...+..+++++|++++|+|+++.. +|. ... ..+..+.. .+.| +++++||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVSKKWIPELKHYAPGVP-IVLVGTKLDLRD 126 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEechhhhc
Confidence 3456789999999999989999999999999999997743 111 111 11122222 2677 899999999753
Q ss_pred cchhHHH----HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 105 VMWSEAR----YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 105 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....... .....++...+.+..++ .+++++||++|+|++++.
T Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 127 DKQFFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVF 172 (182)
T ss_dssp CHHHHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred CcccccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHH
Confidence 2110000 00011223334444432 489999999999998753
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=102.34 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.9
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHH--cCCCcEEEEEeC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKT--AGVKHLVVLINK 99 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ivv~NK 99 (156)
+..++ ..+.+|||||++++...+..+++.+|++++|+|+++.. +|. .. ...+..+.. .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK 138 (207)
T 2fv8_A 66 IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD---SLE---NIPEKWVPEVKHFCPNVP-IILVANK 138 (207)
T ss_dssp EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEEC
T ss_pred EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEc
Confidence 44555 57999999999999888889999999999999997642 111 11 111222222 2678 8999999
Q ss_pred CCCCCcchhHHHHHHH------HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNEC------KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.........+..+ .++...+....+ ..+++++||++|.|++++.
T Consensus 139 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~el~ 191 (207)
T 2fv8_A 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ-----AYDYLECSAKTKEGVREVF 191 (207)
T ss_dssp GGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHH
T ss_pred hhhhccccchhhhhhcccCCCCHHHHHHHHHhcC-----CCEEEEeeCCCCCCHHHHH
Confidence 9986421111111000 011223333332 2389999999999998753
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=106.05 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=60.2
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeC
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
..+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+... ..++| +++|+||
T Consensus 73 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~-~~~~p-iilv~nK 147 (214)
T 2j1l_A 73 VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN---SFDNIFNRWYPEVNHF-CKKVP-IIVVGCK 147 (214)
T ss_dssp EEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CSSCC-EEEEEEC
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEC
Confidence 3445554 47999999999999999999999999999999998743 111000 111111111 13678 8999999
Q ss_pred CCCCCcchhHHHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|+.........+. ...++...+.+..++ .+++++||++|.|++++.
T Consensus 148 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVF 200 (214)
T ss_dssp GGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHH
T ss_pred hhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHH
Confidence 99864311110000 001123344444432 489999999999998763
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-15 Score=101.16 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=66.9
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||+++ ..+++++|++++|+|+++.. +|.....+...+..... .++| +++|+|
T Consensus 46 ~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~n 116 (178)
T 2iwr_A 46 EMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN---SFQAVSRLHGQLSSLRGEGRGGLA-LALVGT 116 (178)
T ss_dssp EEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCSSSCCCE-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH---HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEE
Confidence 344444 5689999999987 45778899999999998743 11111112112222222 2567 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+..........++ ...+.+.. .+++++++||++|+|++++.
T Consensus 117 K~Dl~~~~~~~v~~~~----~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf 160 (178)
T 2iwr_A 117 QDRISASSPRVVGDAR----ARALXADM-----KRCSYYETXATYGLNVDRVF 160 (178)
T ss_dssp CTTCBTTBCCCSCHHH----HHHHHHHH-----SSEEEEEEBTTTTBTHHHHH
T ss_pred CccccccccCcCCHHH----HHHHHHhh-----cCCeEEEEeccccCCHHHHH
Confidence 9998421111111122 22233332 14689999999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=105.93 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCCCcEEEEEe
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGVKHLVVLIN 98 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ivv~N 98 (156)
.+..++ ..+.+|||||+++|...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.| +++|+|
T Consensus 49 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~n 121 (212)
T 2j0v_A 49 NVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA---SYE---NVLKKWMPELRRFAPNVP-IVLVGT 121 (212)
T ss_dssp EEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCC-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEe
Confidence 344444 58999999999999988999999999999999997743 111 111 11122222 2678 899999
Q ss_pred CCCCCCcchhHHH-H-HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEAR-Y-NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+......... . ....++...+.+..++ .+++++||++|+|++++.
T Consensus 122 K~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp CHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred CHHhhhCccccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHH
Confidence 9997532110000 0 0001223334444432 489999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=101.75 Aligned_cols=106 Identities=20% Similarity=0.119 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++ ...+..+++.+|++++|+|+++.. +|.....+...+.... ..+.| +++|+||+|+.....
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQ 149 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccc
Confidence 36799999999998 777888999999999999998732 2221122222222222 24678 899999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
. ..++ ...+.+.. +++++++||++|. |++++.
T Consensus 150 v--~~~~----~~~~~~~~------~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 150 V--STEE----GEKLATEL------ACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp S--CHHH----HHHHHHHH------TSEEEECCTTTCTTCHHHHH
T ss_pred c--CHHH----HHHHHHHh------CCeEEEECCCcCCcCHHHHH
Confidence 1 1111 22233333 3689999999999 988753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=113.38 Aligned_cols=124 Identities=22% Similarity=0.201 Sum_probs=79.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH------------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP------------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~------------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
.+|+|.+.....+.+++..+.+|||||++++.. ....+++.+|++++|+|++.+. ..+...
T Consensus 211 ~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~-------~~~~~~ 283 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI-------TRQDQR 283 (439)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC-------CHHHHH
T ss_pred CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CHHHHH
Confidence 468899999999999999999999999854432 2345778899999999998765 233444
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+...+.| +++++||+|+.... ....++..+.+...+... ...+++++||++|.|+++|.
T Consensus 284 i~~~l~~~~~~-~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv~~l~ 346 (439)
T 1mky_A 284 MAGLMERRGRA-SVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI-----DYSPLIFTSADKGWNIDRMI 346 (439)
T ss_dssp HHHHHHHTTCE-EEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG-----TTSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHcCCC-EEEEEECccCCCch--hhHHHHHHHHHHHHhccC-----CCCcEEEEECCCCCCHHHHH
Confidence 55556667888 89999999986421 111233333333222222 24689999999999998763
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-15 Score=107.19 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-CcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-GGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
....+.+|||||++++...+..+++.+|++|+|+|+++.. +|.. ...+...+... ..+.| +++|+||+|+....
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSALKKWRTEILDY-CPSTR-VLLIGCKTDLRTDL 147 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH---HHHHHHTHHHHHHHHH-CTTSE-EEEEEECGGGGGCH
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH---HHHHHHHHHHHHHHHh-CCCCC-EEEEEEChhhccch
Confidence 4467999999999999999999999999999999998753 1111 11222222211 12667 89999999985310
Q ss_pred hhHHH------HHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 107 WSEAR------YNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 107 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
..... .....++...+.+..++ .+++++||++|.| ++++
T Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 148 STLMELSHQKQAPISYEQGCAIAKQLGA-----EIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHH
T ss_pred hhhhhhcccccCccCHHHHHHHHHHcCC-----CEEEEeccCCCcccHHHH
Confidence 00000 00001223334444432 2899999999998 8765
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-16 Score=109.87 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCc-chHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGG-QTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||++++...+..+++++|++++|+|+++.. +|.... .+...+.... .+.| +++|+||+|+.....
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~~l~~~~-~~~p-iilv~NK~Dl~~~~~ 151 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENVRAKWYPEVRHHC-PNTP-IILVGTKLDLRDDKD 151 (204)
Confidence 356779999999999999999999999999999997743 221111 2222222111 1677 899999999863211
Q ss_pred hHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCCC
Q psy10355 108 SEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGIE 153 (156)
Q Consensus 108 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~~ 153 (156)
....... ..++...+.+..+ ..+++++||++|+|++++.+.
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 152 TIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 1100000 0111222222221 137899999999999988653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-15 Score=104.13 Aligned_cols=108 Identities=17% Similarity=0.054 Sum_probs=69.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCCCCCc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.....+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+. .....++| +++|+||+|+...
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPE 144 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGG
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccc
Confidence 35678999999999999888999999999999999998642 1111111111111 11123677 8999999998532
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... ..+ ...+.+.. +++++++||++|.|++++
T Consensus 145 ~~v~--~~~----~~~~~~~~------~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 145 REVQ--AVE----GKKLAESW------GATFMESSARENQLTQGI 177 (201)
T ss_dssp CCSC--HHH----HHHHHHHH------TCEEEECCTTCHHHHHHH
T ss_pred cccC--HHH----HHHHHHHh------CCeEEEEeCCCCCCHHHH
Confidence 1111 111 22233333 358999999999998875
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=101.32 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=68.9
Q ss_pred EEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEE
Q psy10355 23 AYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVL 96 (156)
Q Consensus 23 ~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv 96 (156)
..+.+++ ..+.+|||||++++. +++.+|++++|+|+++.. +|. .....+..+.. .+.| ++++
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv 125 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---SFQ---TVYNYFLRLCSFRNASEVP-MVLV 125 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHTTSCGGGSC-EEEE
T ss_pred EEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEE
Confidence 4455566 567889999999887 788899999999998743 111 11112222222 3567 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+..........+ +...+.+..+ .++++++||++|+|++++.
T Consensus 126 ~nK~Dl~~~~~~~v~~~----~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 126 GTQDAISAANPRVIDDS----RARKLSTDLK-----RCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EECTTCBTTBCCCSCHH----HHHHHHHHTT-----TCEEEEEBTTTTBTHHHHH
T ss_pred EECcccccccccccCHH----HHHHHHHHcC-----CCeEEEecCCCCCCHHHHH
Confidence 99999842111111111 2333344442 3689999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-15 Score=101.87 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=65.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcEEEEEeCCCCCCc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~NK~Dl~~~ 105 (156)
...+.+|||||++++... ..+++.+|++++|+|+++.. +|.....+...+..... .+.| +++|+||+|+...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 142 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---SFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQY 142 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhc
Confidence 357899999999887653 56889999999999998632 22211222222222211 4678 8999999997531
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec-ccCCCCccCC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG-ELEKNPLLLG 151 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa-~~g~gi~~l~ 151 (156)
... ..+ +...+.+.. +++++++|| ++|+|++++.
T Consensus 143 ~~v--~~~----~~~~~~~~~------~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 143 RQV--TKA----EGVALAGRF------GCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp CSS--CHH----HHHHHHHHH------TCEEEECCSSSCSHHHHHHH
T ss_pred Ccc--CHH----HHHHHHHHc------CCcEEEEeecCccccHHHHH
Confidence 110 111 223333444 358999999 8999988753
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=107.32 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=76.8
Q ss_pred ceeeeeeEEEEeCCeE--EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHHH--cCC
Q psy10355 16 KTVEVGRAYFETDRKH--FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAKT--AGV 90 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 90 (156)
++.+.....+..++.. +.+|||||++++...+..+++.+|++++|+|+++.. +|. ... ..+..+.. .+.
T Consensus 187 t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~ 260 (332)
T 2wkq_A 187 TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA---SFH---HVRAKWYPEVRHHCPNT 260 (332)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTS
T ss_pred cccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhhCCCC
Confidence 3344444455566654 559999999999988999999999999999998743 111 111 11122222 267
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++|+||+|+.........+.. ..++...+.+..++ .+++++||++|+|++++.
T Consensus 261 p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 261 P-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 321 (332)
T ss_dssp C-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred c-EEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHH
Confidence 8 8999999997532111100000 01123334444432 489999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-15 Score=116.63 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.4
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCC--------CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPG--------HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG--------~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
.+..+|+|.+.....+.+.+..+.+||||| ++++...+..+++.+|++|+|+|+..+. .....+.
T Consensus 51 v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~-------~~~d~~l 123 (456)
T 4dcu_A 51 VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV-------TAADEEV 123 (456)
T ss_dssp ----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCS-------CHHHHHH
T ss_pred cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCC-------ChHHHHH
Confidence 345679999999999999999999999999 5667778899999999999999998876 3555666
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...+...+.| +++|+||+|+.... .....+ ...++ ...+++||++|.|+.+|
T Consensus 124 ~~~l~~~~~p-vilV~NK~D~~~~~----------~~~~e~-~~lg~-----~~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 124 AKILYRTKKP-VVLAVNKLDNTEMR----------ANIYDF-YSLGF-----GEPYPISGTHGLGLGDL 175 (456)
T ss_dssp HHHHTTCCSC-EEEEEECC-------------------CCS-GGGSS-----SSEEECCTTTCTTHHHH
T ss_pred HHHHHHcCCC-EEEEEECccchhhh----------hhHHHH-HHcCC-----CceEEeecccccchHHH
Confidence 6777777888 89999999975210 001111 11222 25679999999998775
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-15 Score=101.50 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++++|+|+++.. +|... ..+...+... ..+.| +++|+||+|+.....
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~~ 128 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQEF-CPNTK-MLLVGCKSDLRTDVS 128 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CTTCE-EEEEEECGGGGGCHH
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---HHHHHHHHHHHHHHHH-CCCCC-EEEEEEcchhhcchh
Confidence 367999999999999888888999999999999998742 11111 1122222111 13567 899999999853210
Q ss_pred hHHHHHHH---------HHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 108 SEARYNEC---------KDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
...++ .++...+.+..+ ..+++++||+ +|.|++++.
T Consensus 129 ---~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 129 ---TLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 174 (184)
T ss_dssp ---HHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHH
T ss_pred ---hHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHH
Confidence 00100 122333444443 2589999999 688987753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=101.26 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=69.1
Q ss_pred eEEEEeCCe--EEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEE
Q psy10355 22 RAYFETDRK--HFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLI 97 (156)
Q Consensus 22 ~~~~~~~~~--~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~ 97 (156)
...+..++. .+.+|||+|... +......+++.+|++++|+|.++.. +|.....+...+... ...++| +++|+
T Consensus 77 ~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---sf~~~~~~~~~l~~~~~~~~~p-iilVg 152 (211)
T 2g3y_A 77 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFEKASELRIQLRRARQTEDIP-IILVG 152 (211)
T ss_dssp EEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---HHHHHHHHHHHHHTSGGGTTSC-EEEEE
T ss_pred EEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCc-EEEEE
Confidence 334455554 578999999877 4445566778899999999997632 222111222111111 113678 89999
Q ss_pred eCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+...... ..++ ...+.... +++++++||++|+|++++.
T Consensus 153 NK~DL~~~r~v--~~~e----~~~~a~~~------~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 153 NKSDLVRCREV--SVSE----GRACAVVF------DCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp ECTTCGGGCCS--CHHH----HHHHHHHH------TCEEEECBTTTTBSHHHHH
T ss_pred EChHHhcCceE--eHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 99998531111 0111 11222222 3689999999999998763
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=109.18 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=74.8
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHH---HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--Hc
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVP---NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TA 88 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~---~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~ 88 (156)
.+.|++.....+. ...++.+|||||+++|.. .+..++++++++|+|+|+++. +... ...+.+.+..+. ..
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~---~~~l~~~l~~~~~~~~ 105 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINA---ITNLAMIIEYAYKVNP 105 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHH---HHHHHHHHHHHHHHCT
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHH---HHHHHHHHHHHhhcCC
Confidence 4556665555542 347899999999999964 468899999999999999875 2100 112222222222 23
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
++| +++++||+|+............+..+...-+.+.++. ..+++|++|||++ .||.+
T Consensus 106 ~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 106 SIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp TCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHH
T ss_pred CCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHH
Confidence 677 8999999998642211111112222111111111110 0257999999997 46654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-13 Score=99.49 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=66.1
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcC-------hHHHH-------Hhhhhc-------------CCEEEEEEeC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKS-------FVPNM-------IGGTAQ-------------ADLAVLVISA 63 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~-------~~~~~-------~~~~~~-------------~d~~ilvvD~ 63 (156)
.++++++.....+..++ ..+.+|||||+.+ +.... ..++.. +|++++++++
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 55666666666666555 4899999999842 22222 333333 6799999977
Q ss_pred CC-CccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 64 RK-GEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 64 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
+. +. .......+..+.. ++| +|+|+||+|+.. .......++.+...+... +++++++||+
T Consensus 126 ~~~~~-------~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~----~~e~~~~~~~i~~~l~~~------~i~v~~~sa~ 186 (274)
T 3t5d_A 126 SGHGL-------KPLDIEFMKRLHE-KVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEH------KIKIYEFPET 186 (274)
T ss_dssp CCSSC-------CHHHHHHHHHHTT-TSC-EEEEESSGGGSC----HHHHHHHHHHHHHHHHHT------TCCCCCC---
T ss_pred CCCCC-------CHHHHHHHHHHhc-cCC-EEEEEeccCCCC----HHHHHHHHHHHHHHHHHc------CCeEEcCCCC
Confidence 65 33 2444555555554 788 899999999763 233444455555555544 4578999999
Q ss_pred cCCCCccCC
Q psy10355 143 LEKNPLLLG 151 (156)
Q Consensus 143 ~g~gi~~l~ 151 (156)
+|+|++++.
T Consensus 187 ~~~~~~~l~ 195 (274)
T 3t5d_A 187 DDEEENKLV 195 (274)
T ss_dssp --------C
T ss_pred CChhHHHHH
Confidence 999998764
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=109.99 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=84.9
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcc---cc-ccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF---ET-GFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~---~~-~~~~~~~~~~~~~~~~~-- 87 (156)
+..|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++... +. ...........+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 4556777777888899999999999999999999999999999999999976310 00 00000112222222222
Q ss_pred --cCCCcEEEEEeCCCCCCcch-------------hHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccC
Q psy10355 88 --AGVKHLVVLINKMDDPTVMW-------------SEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +|+++||+|+..... .....++..+.+...+..+... ....+.+++|||++|+||..+
T Consensus 257 ~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 257 WFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred cccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 3567 999999999741100 0011233333333222233211 113578999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-14 Score=99.56 Aligned_cols=109 Identities=11% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhc----CCEEEEEEeCC-CCccccccCCCcchHHHHHHHH----HcCCCcEEEEEe
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQ----ADLAVLVISAR-KGEFETGFDRGGQTREHAMLAK----TAGVKHLVVLIN 98 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~----~d~~ilvvD~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~N 98 (156)
....+.+|||||++++...+..+++. +|++++|+|++ ... +|.....+...+.... ..+.| +++|+|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 128 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGID-ILIACN 128 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HHHHHHHHHHHHHhcccccccCCCC-EEEEEE
Confidence 55789999999999998888888877 89999999998 321 1111111211111111 14677 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
|+|+..........+.+.+++..+.... ..+++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHH------hccccccccccccc
Confidence 9998754332323333344444443332 24678899998875
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=101.95 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+|||||+++|...+..+++.+|++|+|+|+++.. +|... ..+...+... ..+.| +++|+||+|+.....
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~i~~~-~~~~p-iilv~nK~Dl~~~~~ 149 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQEF-CPNTK-MLLVGCKSDLRTDVS 149 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHH-CTTCE-EEEEEECGGGGGCHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHHH-CCCCC-EEEEEechhhccchh
Confidence 367999999999999888888999999999999998742 11111 1122222111 13567 899999999853210
Q ss_pred hHHHHHHH---------HHHHHHHHHHcCCCCCCCCeEEEeecc-cCCCCccCC
Q psy10355 108 SEARYNEC---------KDKILPYLKKLGFNAAKDLSFMPCSGE-LEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~g~gi~~l~ 151 (156)
...++ .++...+.+..+ ..+++++||+ +|.|++++.
T Consensus 150 ---~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 150 ---TLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp ---HHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHH
T ss_pred ---hhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHH
Confidence 00100 122333444443 2589999999 688988753
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-14 Score=109.19 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=71.9
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHH--------HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVP--------NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~--------~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+|+|.+.....+..++..+.+|||||++++.. .+..+++.+|++++|+|++.+. .....+.+..
T Consensus 255 ~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------~~~~~~i~~~ 327 (462)
T 3geh_A 255 LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW-------TTGDQEIYEQ 327 (462)
T ss_dssp CTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred CCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC-------CHHHHHHHHh
Confidence 368888888888999999999999999876532 2445678999999999998865 1233333333
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+ .+.| +++|+||+|+....... .+ + .+. ...+++++||++|+|+++|.
T Consensus 328 l--~~~p-iivV~NK~Dl~~~~~~~--------~~----~--~~~--~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 328 V--KHRP-LILVMNKIDLVEKQLIT--------SL----E--YPE--NITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp H--TTSC-EEEEEECTTSSCGGGST--------TC----C--CCT--TCCCEEEEBTTTTBSHHHHH
T ss_pred c--cCCc-EEEEEECCCCCcchhhH--------HH----H--Hhc--cCCcEEEEECCCCCCHHHHH
Confidence 3 2357 89999999986431110 00 0 010 24689999999999998764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-14 Score=102.20 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=76.5
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcCh-----------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSF-----------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|.......+.+++..+.||||||+.++ ...+..+++.+|++++|+|++. . .......+..
T Consensus 57 ~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~~ 128 (260)
T 2xtp_A 57 LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-------TSQDQQAAQR 128 (260)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-------CHHHHHHHHH
T ss_pred eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-------CHHHHHHHHH
Confidence 7888888888899999999999998664 2334457789999999999975 2 2344444444
Q ss_pred HHHc-----CCCcEEEEEe-CCCCCCcchhHHHHHHHH----HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 85 AKTA-----GVKHLVVLIN-KMDDPTVMWSEARYNECK----DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 85 ~~~~-----~~~~~ivv~N-K~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+... +.| .++++| |+|+...... ..+. +.+...++..+... ..+..+++||++|.|+++|
T Consensus 129 l~~~~~~~~~~~-~i~vv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 129 VKEIFGEDAMGH-TIVLFTHKEDLNGGSLM----DYMHDSDNKALSKLVAACGGRI-CAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp HHHHHCGGGGGG-EEEEEECGGGGTTCCHH----HHHHHCCCHHHHHHHHHTTTCE-EECCTTCCHHHHHHHHHHH
T ss_pred HHHHhCchhhcc-EEEEEEcccccCCccHH----HHHHhcchHHHHHHHHHhCCeE-EEecCcccccccHHHHHHH
Confidence 4443 456 566666 9998643211 1111 12333344433110 0011189999999998765
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=107.01 Aligned_cols=135 Identities=11% Similarity=0.088 Sum_probs=76.7
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC-----CcchHHHHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR-----GGQTREHAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~-----~~~~~~~~~~~~~- 87 (156)
+..|++.....+..++..+.+|||||++++...|..++++++++|||+|.++.. +..++. .......+..+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d-q~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD-QVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTT-CEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcccc-ccccccccccHHHHHHHHHHHHhcc
Confidence 445666677788889999999999999999999999999999999999998731 000000 0111222222222
Q ss_pred ---cCCCcEEEEEeCCCCCCcc--------------hhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCcc
Q psy10355 88 ---AGVKHLVVLINKMDDPTVM--------------WSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~ 149 (156)
.+.| +|+++||+|+.... ......++..+.+...+..+.-.+ ...+.+++|||++|+||..
T Consensus 264 ~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 264 RVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp GGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred hhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 3567 99999999974110 000112333333322222221111 1357889999999999875
Q ss_pred C
Q psy10355 150 L 150 (156)
Q Consensus 150 l 150 (156)
+
T Consensus 343 v 343 (362)
T 1zcb_A 343 V 343 (362)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-14 Score=104.62 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=85.6
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcc----ccccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEF----ETGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~----~~~~~~~~~~~~~~~~~~~-- 87 (156)
+.-|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++... ..+......+...+..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 4566777888888999999999999999999999999999999999998762110 0000000112222332222
Q ss_pred --cCCCcEEEEEeCCCCCCcch--------------hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 88 --AGVKHLVVLINKMDDPTVMW--------------SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.++| +++++||+|+..... .....++..+.+...+..........+.+..|||++++||..
T Consensus 231 ~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 231 WFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp GGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred ccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 3567 899999999742110 011233334444443333332222356788999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-14 Score=98.30 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=66.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+|||||+++|...+..++++++++++|+|.+++. .+|.....+...+.. ...+.| +++|+||+|+...
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~~~~~~~~~~~~-~~~~~p-iilv~nK~Dl~~~-- 127 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVDAMKPWLFNIKA-RASSSP-VILVGTHLDVSDE-- 127 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHHTHHHHHHHHHH-HCTTCE-EEEEEECGGGCCH--
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHHHHHHHHHHHHh-hCCCCc-EEEEEECCCcccc--
Confidence 4568999999999998888888889999999999997752 111111112111111 113567 8999999997531
Q ss_pred hHHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccCC
Q psy10355 108 SEARYNE-CKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLLG 151 (156)
Q Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l~ 151 (156)
..... ..+....+.+..++.. ..+++++||++|. |++.|.
T Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 128 --KQRKACMSKITKELLNKRGFPA--IRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp --HHHHHHHHHHHHHTTTCTTSCE--EEEEEECCTTSCCHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHhcCCcc--hhheEEEecccCchhHHHHH
Confidence 11111 1111222222222210 0138999999996 877653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=92.63 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=72.8
Q ss_pred HHhhcCceeeeeeEEEEeCCeEEEEEeCCC-----------CcChHHHHHhhhhc----CCEEEEEEeCCCCccc-ccc-
Q psy10355 10 QKREKGKTVEVGRAYFETDRKHFTILDAPG-----------HKSFVPNMIGGTAQ----ADLAVLVISARKGEFE-TGF- 72 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-----------~~~~~~~~~~~~~~----~d~~ilvvD~~~~~~~-~~~- 72 (156)
.+..+|+|.......+. .+.+||||| ++++...+..+++. ++++++|+|+.....- ..+
T Consensus 28 ~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~ 103 (190)
T 2cxx_A 28 RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWE 103 (190)
T ss_dssp SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHH
T ss_pred cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhh
Confidence 34456777666554443 799999999 44555555555554 5577777776432100 000
Q ss_pred --CCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEeecccCCCCcc
Q psy10355 73 --DRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA-KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~g~gi~~ 149 (156)
.......+....+...+.| +++|+||+|+.... .+....+.+..++.-. ...+++++||++|+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 104 KRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV---------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp HTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH---------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred ccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH---------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 0001122333444556788 89999999986421 1223333444443100 013689999999999987
Q ss_pred CC
Q psy10355 150 LG 151 (156)
Q Consensus 150 l~ 151 (156)
+.
T Consensus 174 l~ 175 (190)
T 2cxx_A 174 LK 175 (190)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=98.47 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChH---------HHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFV---------PNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~---------~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
++.|.+.....+..++..+.+|||||+.++. .........+|++++|+|++... +++. ......+..
T Consensus 198 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~ 273 (357)
T 2e87_A 198 PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEE 273 (357)
T ss_dssp TTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHH
T ss_pred CCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHH
Confidence 4667777777777788999999999985431 12223445699999999987632 0000 111122222
Q ss_pred HHH-c-CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT-A-GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~-~-~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+.. . +.| +++|+||+|+... ....+ ....++.. +.+++++||++|+|+++|.
T Consensus 274 i~~~~~~~p-iilV~NK~Dl~~~----~~~~~----~~~~~~~~------~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 274 VHGEFKDLP-FLVVINKIDVADE----ENIKR----LEKFVKEK------GLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp HHHHTTTSC-EEEEECCTTTCCH----HHHHH----HHHHHHHT------TCCCEECBTTTTBTHHHHH
T ss_pred HHHhcCCCC-EEEEEECcccCCh----HHHHH----HHHHHHhc------CCCeEEEeCCCCcCHHHHH
Confidence 222 2 678 8999999998632 11222 22233332 4688999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=95.13 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=68.2
Q ss_pred eeeeeEEEEeCCe--EEEEEeCCCCcC-hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcE
Q psy10355 18 VEVGRAYFETDRK--HFTILDAPGHKS-FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHL 93 (156)
Q Consensus 18 ~~~~~~~~~~~~~--~~~iiDtpG~~~-~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (156)
.+.....+..++. .+.+|||+|... +......+++.+|++++|+|.++.. +|.....+...+.... ..+.| +
T Consensus 42 ~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~~~~~~~~l~~~~~~~~~p-i 117 (192)
T 2cjw_A 42 EDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFEKASELRIQLRRARQTEDIP-I 117 (192)
T ss_dssp TTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-E
T ss_pred eeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCe-E
Confidence 3333344555554 578999999865 3334456778899999999998732 2221122222222221 23677 8
Q ss_pred EEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 94 VVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 94 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++|+||+|+...... ...+ ...+.... +++++++||++|+|++++.
T Consensus 118 ilV~NK~Dl~~~r~v--~~~~----~~~~a~~~------~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 118 ILVGNKSDLVRXREV--SVSE----GRAXAVVF------DXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEECTTCGGGCCS--CHHH----HHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred EEEEechhhhccccc--cHHH----HHHHHHHh------CCceEEeccccCCCHHHHH
Confidence 999999997531110 1111 11122222 4589999999999998753
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=102.72 Aligned_cols=120 Identities=19% Similarity=0.156 Sum_probs=75.8
Q ss_pred cCceeeeeeEEEEeCC-eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFETDR-KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++|.......+.+++ ..+.+|||||+.+ +.......+..+|++|+|+|++....... ..........+
T Consensus 189 ~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~---~~~~~~~~~eL 265 (342)
T 1lnz_A 189 HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP---YDDYLTINQEL 265 (342)
T ss_dssp TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCH---HHHHHHHHHHH
T ss_pred CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccCh---HHHHHHHHHHH
Confidence 4677888888888876 8899999999632 23344455567999999999975210000 01222223333
Q ss_pred HH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.. .+.| +++|+||+|+... .. .+..+.+.++. ..+++++||++++|+++|.
T Consensus 266 ~~~~~~l~~~p-~ilV~NK~Dl~~~---~e-------~~~~l~~~l~~----~~~v~~iSA~tg~gi~eL~ 321 (342)
T 1lnz_A 266 SEYNLRLTERP-QIIVANKMDMPEA---AE-------NLEAFKEKLTD----DYPVFPISAVTREGLRELL 321 (342)
T ss_dssp HHSCSSTTTSC-BCBEEECTTSTTH---HH-------HHHHHHHHCCS----CCCBCCCSSCCSSTTHHHH
T ss_pred HHhhhhhcCCC-EEEEEECccCCCC---HH-------HHHHHHHHhhc----CCCEEEEECCCCcCHHHHH
Confidence 33 3577 7999999998631 11 12222233321 2578999999999998764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=105.91 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCCCCcc
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl~~~~ 106 (156)
+..+.+|||||++.+......+++.+|++|+|+|++... .....+..+... +.| +++|+||+|+....
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---------~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---------NKHYWLRHIEKYGGKSP-VIVVMNKIDENPSY 166 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---------GHHHHHHHHHHHSSSCC-EEEEECCTTTCTTC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---------hHHHHHHHHHHhCCCCC-EEEEEECCCccccc
Confidence 578999999999999888888899999999999997532 223333334433 478 89999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .+ .+...+... +.+++++||++|.|+++|.
T Consensus 167 ~v~--~~----~~~~~~~~~------~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 167 NIE--QK----KINERFPAI------ENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp CCC--HH----HHHHHCGGG------TTCEEECCC-----CTTHH
T ss_pred ccC--HH----HHHHHHHhc------CCceEEEecCcccCHHHHH
Confidence 111 11 233333333 3579999999999999864
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=100.88 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=62.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--Cc---chHHHHHHHHH-
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GG---QTREHAMLAKT- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~---~~~~~~~~~~~- 87 (156)
+..|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++.. +..++. .. .....+..+..
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~yd-q~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN-MVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGG-CBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccc-cccccccccchHHHHHHHHHHHHhc
Confidence 444666667778888999999999999999999999999999999999998621 000000 01 11222222222
Q ss_pred ---cCCCcEEEEEeCCCCC
Q psy10355 88 ---AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 ---~~~~~~ivv~NK~Dl~ 103 (156)
.++| +++++||+|+.
T Consensus 280 ~~~~~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTIS-VILFLNKQDLL 297 (402)
T ss_dssp TTCSSCC-EEEEEECHHHH
T ss_pred ccCCCCe-EEEEEEChhhh
Confidence 3567 99999999973
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-13 Score=98.32 Aligned_cols=102 Identities=18% Similarity=0.056 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+||| +++|...+..+++++|++|+|+|+++... ++ ......+..+...++| +++|+||+|+.. .
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~~----~ 130 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLYD----E 130 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCC----H
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcCC----c
Confidence 37999999 89998888999999999999999987431 11 1111222333445778 899999999863 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+ +...+.+..+. . ++++++||++|+|++++.
T Consensus 131 ~~v~----~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 131 DDLR----KVRELEEIYSG---L-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HHHH----HHHHHHHHHTT---T-SCEEECCTTTCTTHHHHH
T ss_pred hhHH----HHHHHHHHHhh---h-CcEEEEECCCCcCHHHHH
Confidence 1111 22333333321 1 589999999999998764
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-13 Score=101.21 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=63.5
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCc---cc-cccCCCcchHHHHHHHHH--
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGE---FE-TGFDRGGQTREHAMLAKT-- 87 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~---~~-~~~~~~~~~~~~~~~~~~-- 87 (156)
+.-|++.....+..++..+.+|||+|++++...|..++++++++|+|+|.++.. .+ .+..........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 456777888888899999999999999999999999999999999999997311 00 000000112222222222
Q ss_pred --cCCCcEEEEEeCCCCC
Q psy10355 88 --AGVKHLVVLINKMDDP 103 (156)
Q Consensus 88 --~~~~~~ivv~NK~Dl~ 103 (156)
.++| +++++||+|+.
T Consensus 225 ~~~~~p-iiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLF 241 (340)
T ss_dssp GGTTSE-EEEEEECHHHH
T ss_pred ccCCCe-EEEEEECchhh
Confidence 3567 89999999974
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=97.11 Aligned_cols=129 Identities=18% Similarity=0.110 Sum_probs=75.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCc--cccccCCCcchHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGE--FETGFDRGGQTRE 80 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~--~~~~~~~~~~~~~ 80 (156)
+...+.|.+.....+.+++..+.+|||||+.+. ...+...+..+|++++|+|++... .. .....+..
T Consensus 207 ~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~---~~~~~~~~ 283 (364)
T 2qtf_A 207 DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI---ETLQSSFE 283 (364)
T ss_dssp -------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH---HHHHHHHH
T ss_pred cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH---HHHHHHHH
Confidence 345688888888999999999999999997321 233455688999999999997643 10 00000112
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++|.||+|+.... .... ...+..+....+. ...+++++||++|+|++.|.
T Consensus 284 ~L~~l~~~~~p-~ilV~NK~Dl~~~~-~~~~----~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~ 345 (364)
T 2qtf_A 284 ILREIGVSGKP-ILVTLNKIDKINGD-LYKK----LDLVEKLSKELYS---PIFDVIPISALKRTNLELLR 345 (364)
T ss_dssp HHHHHTCCSCC-EEEEEECGGGCCSC-HHHH----HHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHH
T ss_pred HHHHhCcCCCC-EEEEEECCCCCCch-HHHH----HHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHH
Confidence 22222224567 89999999986422 1111 1112222232211 13478999999999998764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=94.00 Aligned_cols=121 Identities=13% Similarity=0.039 Sum_probs=73.7
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCc-------------ChHHHHHhhhhcCCEEE-EEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHK-------------SFVPNMIGGTAQADLAV-LVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~~i-lvvD~~~~~~~~~~~~~~~~ 78 (156)
.|++.......+... ...+.||||||+. .+...+..+++.++.++ +|+|++.+.. .+.
T Consensus 108 ~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~ 180 (299)
T 2aka_B 108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSD 180 (299)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCH
T ss_pred CCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhH
Confidence 344444444444433 4789999999974 34566778888888776 6999987651 233
Q ss_pred -HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 -REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 -~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+...... ..+. +...+ ..+. ....+++++||++|.|+++|.
T Consensus 181 ~~~~~~~~~~~~~~-~i~V~NK~Dl~~~~~~--~~~~----~~~~~--~~~~-~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 181 ALKIAKEVDPQGQR-TIGVITKLDLMDEGTD--ARDV----LENKL--LPLR-RGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp HHHHHHHHCTTCSS-EEEEEECGGGSCTTCC--CHHH----HTTCS--SCCT-TCEEECCCCCCBCTTSCBCHH
T ss_pred HHHHHHHhCCCCCe-EEEEEEccccCCCCch--HHHH----HhCCc--CcCC-CCcEEEECCChhhccccccHH
Confidence 2344555455778 8999999998642211 0111 11000 0110 011378999999999998764
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-13 Score=100.91 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred cCceeeeeeEEEEeC------CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCcccccc-----CCCcchHHHH
Q psy10355 14 KGKTVEVGRAYFETD------RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGF-----DRGGQTREHA 82 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~------~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~-----~~~~~~~~~~ 82 (156)
+..|.++....+..+ ...+.+|||+|++++...+..++++++++|+|+|.++.. +..+ ..-......+
T Consensus 161 r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~yd-q~l~e~~~~~s~~~~~~~~ 239 (354)
T 2xtz_A 161 RVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYD-QTLFEDEQKNRMMETKELF 239 (354)
T ss_dssp CCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTT-CBCSSCTTSBHHHHHHHHH
T ss_pred cccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccc-cccccccchhHHHHHHHHH
Confidence 344666666666663 478999999999999999999999999999999987210 0000 0001122222
Q ss_pred HHHHH----cCCCcEEEEEeCCCCC
Q psy10355 83 MLAKT----AGVKHLVVLINKMDDP 103 (156)
Q Consensus 83 ~~~~~----~~~~~~ivv~NK~Dl~ 103 (156)
..+.. .++| +++++||+|+.
T Consensus 240 ~~i~~~~~~~~~p-iiLvgNK~DL~ 263 (354)
T 2xtz_A 240 DWVLKQPCFEKTS-FMLFLNKFDIF 263 (354)
T ss_dssp HHHHTCGGGSSCE-EEEEEECHHHH
T ss_pred HHHHhccccCCCe-EEEEEECcchh
Confidence 22222 3567 99999999973
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-12 Score=87.33 Aligned_cols=123 Identities=18% Similarity=0.083 Sum_probs=76.2
Q ss_pred hcCceeeeeeEEEEeCCe--EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDRK--HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.++.+.....+.+++. .+.+|||||++++...+..+++.++++++|+|..+.. ++.....+...+......+.
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 111 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHL---TYENVERWLKELRDHADSNI 111 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCC
Confidence 344445555666777764 5788999999988877778888999999999997643 11111111111111111345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
| +++++||+|+....... ..+ ...+.... ++.++.+||+++.|++++.
T Consensus 112 ~-i~~v~nK~Dl~~~~~~~--~~~----a~~l~~~~------~~~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 112 V-IMLVGNKSDLRHLRAVP--TDE----ARAFAEKN------NLSFIETSALDSTNVEEAF 159 (199)
T ss_dssp E-EEEEEECTTCGGGCCSC--HHH----HHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred e-EEEEEECcccccccCcC--HHH----HHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 6 89999999985321111 111 22333333 4688999999999987653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-12 Score=95.39 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=50.0
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHH-HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLA-KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
++|++|+|+|+++.. ..+|.....+...+... ...++| +++|+||+|+.. .... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~----~~~v----~~~~~~~~~~----- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV----ERYI----RDAHTFALSK----- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC----HHHH----HHHHHHHHTS-----
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc----cHHH----HHHHHHHHhc-----
Confidence 799999999998741 01222112232222222 235678 899999999752 1112 2233333322
Q ss_pred CCCeEEEeecccCCCCccCC
Q psy10355 132 KDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+++++++||++|.|++++.
T Consensus 227 ~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 227 KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp SSCCEEECBTTTTBSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 14689999999999998753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=87.27 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=66.0
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC-----------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS-----------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..++|.......+.+++..+.+|||||+.+ +...+..+++++|++|+|+|++... ......
T Consensus 61 ~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~ 132 (239)
T 3lxx_A 61 AKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKA 132 (239)
T ss_dssp ----CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHH
T ss_pred CCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHH
Confidence 347888888888999999999999999643 4445566667889999999986532 222222
Q ss_pred HHHHH-----HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecc
Q psy10355 82 AMLAK-----TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGE 142 (156)
Q Consensus 82 ~~~~~-----~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 142 (156)
+..+. ....| +++|+||+|+.........+....+.+..+++..+ ..++++++.
T Consensus 133 l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~------~~~~~~~~~ 191 (239)
T 3lxx_A 133 TEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG------DRYCALNNK 191 (239)
T ss_dssp HHHHHHHHHHHHGGG-EEEEEECGGGC------------CHHHHHHHHHHS------SSEEECCTT
T ss_pred HHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC------CEEEEEECC
Confidence 22221 12346 89999999976432111111111223555555543 345666554
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=93.34 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=66.3
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.||||||... .....+..+|++++|+|+..+.. .+... . ...+.| .++|+||+|+..
T Consensus 169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~-------~~~l~--~--~~~~~p-~ivVlNK~Dl~~-- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQ-------LQGIK--K--GVLELA-DIVVVNKADGEH-- 231 (355)
T ss_dssp HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCT-------TTTCC--T--TSGGGC-SEEEEECCCGGG--
T ss_pred hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCcc-------HHHHH--H--hHhhcC-CEEEEECCCCcC--
Confidence 3678999999999654 23344588999999999876431 00000 0 012347 699999999752
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+++...+...+... ....+++++||++|+|+++|.
T Consensus 232 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 232 --HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred --hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 2223333444544444332111 014689999999999998764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-11 Score=88.79 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=57.2
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCcC-------------hHHHHHhhhhcCCEEEEEEeC-CCCccccccCCCcchH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHKS-------------FVPNMIGGTAQADLAVLVISA-RKGEFETGFDRGGQTR 79 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~ilvvD~-~~~~~~~~~~~~~~~~ 79 (156)
|++.+.....+.. .+.++.||||||+.+ +...+..+++.+|++++|+|+ +.+.. .....
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~------~~~~~ 188 (315)
T 1jwy_B 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDAL 188 (315)
T ss_dssp -CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHH
T ss_pred CccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh------hhHHH
Confidence 4544444444433 457899999999864 556788889999999999997 44331 12233
Q ss_pred HHHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 80 EHAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 80 ~~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+..+...+.| +++|+||+|+..
T Consensus 189 ~i~~~~~~~~~~-~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 189 QLAKEVDPEGKR-TIGVITKLDLMD 212 (315)
T ss_dssp HHHHHHCSSCSS-EEEEEECTTSSC
T ss_pred HHHHHhCCCCCc-EEEEEcCcccCC
Confidence 555555556788 899999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=83.76 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhc----CCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQ----ADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~----~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK 99 (156)
.+..+.+|||||+.++...+..+++. +|++++|+|++... .++.....+...+..... .+.| +++|+||
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 165 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGID-ILIACNK 165 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEEC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEc
Confidence 56789999999999887666666665 89999999997221 111101111111111111 3678 8999999
Q ss_pred CCCCCcchhHHHHHHHHHHHH
Q psy10355 100 MDDPTVMWSEARYNECKDKIL 120 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~ 120 (156)
+|+..........+.+.+++.
T Consensus 166 ~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 166 SELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp TTSTTCCCHHHHHHHHHHHHH
T ss_pred hHhcCCCCHHHHHHHHHHHHH
Confidence 998754433333344444443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=91.92 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCcCh----H---HHHHhhhhcCCEEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSF----V---PNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 30 ~~~~iiDtpG~~~~----~---~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
.++.||||||+.+. . .....+++.+|++++|+|++++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998642 1 2223557899999999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=90.71 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=51.8
Q ss_pred cCceeeeeeEEEEeCCe--EEEEEeCCCC-------cChHHHHH-------hhhhcC-------------CEEEEEEeCC
Q psy10355 14 KGKTVEVGRAYFETDRK--HFTILDAPGH-------KSFVPNMI-------GGTAQA-------------DLAVLVISAR 64 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~--~~~iiDtpG~-------~~~~~~~~-------~~~~~~-------------d~~ilvvD~~ 64 (156)
+++++......+..++. .+++|||||+ +.+...+. .+++.+ +++++++++.
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 44444444444444444 7999999999 44433332 444433 4577777763
Q ss_pred CCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 65 KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
...+ .......+..+ ..++| +|+|+||+|+.. .......++.+...++.. +++++++||++|
T Consensus 157 ~~~l------~~~d~~~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~------~i~~~~~Sa~~~ 218 (361)
T 2qag_A 157 GHGL------KPLDVAFMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEH------NIKIYHLPDAES 218 (361)
T ss_dssp SSSC------CHHHHHHHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----
T ss_pred CCCc------chhHHHHHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHC------CCCEEeCCCcCC
Confidence 3221 12222233332 24678 899999999863 222333334454444333 468899999999
Q ss_pred CC
Q psy10355 145 KN 146 (156)
Q Consensus 145 ~g 146 (156)
.|
T Consensus 219 ~~ 220 (361)
T 2qag_A 219 DE 220 (361)
T ss_dssp --
T ss_pred Cc
Confidence 87
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=82.15 Aligned_cols=121 Identities=18% Similarity=0.085 Sum_probs=75.3
Q ss_pred cCceeeeeeEEEEeCCeE--EEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC
Q psy10355 14 KGKTVEVGRAYFETDRKH--FTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK 91 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (156)
+.++.+.....+.+++.. +.+|||||++++...+..+++.++++++|+|..... +|.....+...+......+.|
T Consensus 60 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~ 136 (191)
T 1oix_A 60 STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLKELRDHADSNIV 136 (191)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTCE
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCc
Confidence 445555566677777754 567999999998888888889999999999987632 111001111111111112456
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+...... .... ...+.... ++.++.+||+++.|++++
T Consensus 137 -i~~v~nK~Dl~~~~~~--~~~~----a~~l~~~~------~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 137 -IMLVGNKSDLRHLRAV--PTDE----ARAFAEKN------GLSFIETSALDSTNVEAA 182 (191)
T ss_dssp -EEEEEECGGGGGGCCS--CHHH----HHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred -EEEEEECccccccccc--CHHH----HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 8999999997532111 1111 22233332 468899999999998765
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-11 Score=96.81 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=49.3
Q ss_pred eEEEEEeCCCCcC---hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCCCCC
Q psy10355 30 KHFTILDAPGHKS---FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 30 ~~~~iiDtpG~~~---~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
..+.||||||+.+ ....+..+++.+|++|+|+|++.+. .......+. .+...+.| +++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999765 4566778889999999999998764 123333333 33335677 899999999753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-10 Score=79.05 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcC----------hHHHHHhhh---hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKS----------FVPNMIGGT---AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
...|.+..... +.+++ .+.+|||||+.. +......++ +.++++++++|++.+. ....
T Consensus 57 ~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~~~ 126 (210)
T 1pui_A 57 KTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-------KDLD 126 (210)
T ss_dssp ------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHH
T ss_pred CCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-------chhH
Confidence 34566654433 33333 788999999843 222222333 5688999999997754 1222
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
......+...++| ++++.||+|+.... + .+.....+...+...+ ..+.++|+||+++.|++++.
T Consensus 127 ~~~~~~~~~~~~~-~~~v~nK~D~~s~~--~--~~~~~~~~~~~~~~~~----~~~~~~~~Sal~~~~~~~l~ 190 (210)
T 1pui_A 127 QQMIEWAVDSNIA-VLVLLTKADKLASG--A--RKAQLNMVREAVLAFN----GDVQVETFSSLKKQGVDKLR 190 (210)
T ss_dssp HHHHHHHHHTTCC-EEEEEECGGGSCHH--H--HHHHHHHHHHHHGGGC----SCEEEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHcCCC-eEEEEecccCCCch--h--HHHHHHHHHHHHHhcC----CCCceEEEeecCCCCHHHHH
Confidence 3344555567888 78899999975321 1 1111122333333322 13578999999999987653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=90.58 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=63.3
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
+.+..++||||||+.+.... ..+.+|++++|+|+..+.. + +.... ...+.| .++|+||+|+...
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~~- 209 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDNH- 209 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTCH-
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCCh-
Confidence 46789999999998775443 3588999999999975431 0 11100 112457 5889999998632
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+....+++...+...+.. .....+++++||++|+|++.|.
T Consensus 210 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 210 ---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 12222223344333333210 0013478999999999998763
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=88.35 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=74.6
Q ss_pred CceeeeeeEEEEe-CCeEEEEEeCCCCcCh-------------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 15 GKTVEVGRAYFET-DRKHFTILDAPGHKSF-------------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 15 g~t~~~~~~~~~~-~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
|++.+.....+.. ....+.+|||||+.++ ...+..+++.+|++|+|+|+...... ...+..
T Consensus 120 ~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~-----~~~~~~ 194 (360)
T 3t34_A 120 AISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIK 194 (360)
T ss_dssp CCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG-----GCHHHH
T ss_pred CcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC-----CHHHHH
Confidence 3333333333333 3567999999999876 66788889999999999987542210 133444
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+..+...+.| +++|+||+|+....... .+ .++. +......+++++|+.++.+++.+.
T Consensus 195 l~~~~~~~~~~-~i~V~nK~Dl~~~~~~~--~~--------~~~~--~~~~~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 195 ISREVDPSGDR-TFGVLTKIDLMDKGTDA--VE--------ILEG--RSFKLKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp HHHHSCTTCTT-EEEEEECGGGCCTTCCS--HH--------HHTT--SSSCCSSCCEEECCCCHHHHHTTC
T ss_pred HHHHhcccCCC-EEEEEeCCccCCCcccH--HH--------HHcC--ccccccCCeEEEEECChHHhccCC
Confidence 55555455778 89999999976422111 11 1111 111125688999999998877654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=81.63 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=55.5
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhh---------hcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGT---------AQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~---------~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..++|.......+.+++..+.+|||||+.++......++ ..+|++++|+|.+...+ .......+.
T Consensus 67 ~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~ 140 (262)
T 3def_A 67 FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVI 140 (262)
T ss_dssp SCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHH
Confidence 467788888888899999999999999987633222222 27899999988865321 122223333
Q ss_pred HHHHc-C----CCcEEEEEeCCCCC
Q psy10355 84 LAKTA-G----VKHLVVLINKMDDP 103 (156)
Q Consensus 84 ~~~~~-~----~~~~ivv~NK~Dl~ 103 (156)
.+... + .| +++|+||+|+.
T Consensus 141 ~l~~~~~~~~~~~-~ivv~nK~Dl~ 164 (262)
T 3def_A 141 AITQTFGKEIWCK-TLLVLTHAQFS 164 (262)
T ss_dssp HHHHHHCGGGGGG-EEEEEECTTCC
T ss_pred HHHHHhchhhhcC-EEEEEeCcccC
Confidence 33321 2 25 89999999985
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=81.03 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=56.4
Q ss_pred CCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH----HHHH----cCCCcEEEEEeCC-CCCCcchhH
Q psy10355 39 GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM----LAKT----AGVKHLVVLINKM-DDPTVMWSE 109 (156)
Q Consensus 39 G~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~ivv~NK~-Dl~~~~~~~ 109 (156)
|+.+++..|..|+.++|++|||||+++.. .+ ...+.+. .+.. .+.| ++|++||. |++.+...
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~---R~----eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams~- 181 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHK---RH----EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC- 181 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTC---CC----CHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCCH-
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHh---HH----HHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCCH-
Confidence 88889999999999999999999998753 11 1333321 1111 4678 89999995 77654322
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
.++.+.+ ...... ..|.+.+|||++|+|+.+
T Consensus 182 ---~EI~e~L----~L~~l~--R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 182 ---FYLAHEL----HLNLLN--HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp ---HHHHHHT----TGGGGC--SCEEEEEEETTTCTTHHH
T ss_pred ---HHHHHHc----CCcCCC--CCEEEEEeECCCCcCHHH
Confidence 2222222 222221 468999999999999864
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=94.41 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------------hHHHHHhhh-hcCCEEEEEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHKS-------------FVPNMIGGT-AQADLAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------------~~~~~~~~~-~~~d~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.|++.+.....+... ..+++|+||||..+ +...+..++ ..+|++++|+|++.+. ....
T Consensus 133 ~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~-------~~~d 205 (772)
T 3zvr_A 133 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------ANSD 205 (772)
T ss_dssp TCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS-------SSCH
T ss_pred CcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc-------chhH
Confidence 455555555555553 45799999999755 223344444 4689999999998765 2333
Q ss_pred H-HHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 79 R-EHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 ~-~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+..+...+.| +|+|+||+|+........ . +.. .+...+. ....+++++||++|.|++.|.
T Consensus 206 ~l~ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~---~----il~-~~~~~l~-lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 206 ALKIAKEVDPQGQR-TIGVITKLDLMDEGTDAR---D----VLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHHHCTTCSS-EEEEEECTTSSCTTCCSH---H----HHT-TCSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHHHhcCCC-EEEEEeCcccCCcchhhH---H----HHH-HHhhhhh-ccCCceEEecccccccchhHH
Confidence 3 566666667788 899999999864322111 1 100 0000000 012478999999999998764
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=81.96 Aligned_cols=106 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred CeEEEEEeCCCCcChHHH------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHH-H----HHHHHHcCCCcEEEEE
Q psy10355 29 RKHFTILDAPGHKSFVPN------MIGGTAQADLAVLVISARKGEFETGFDRGGQTRE-H----AMLAKTAGVKHLVVLI 97 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ivv~ 97 (156)
++.+.||||||+.++... ...++.. +++++++|+.... ...... . .......+.| +++++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILK-------KPNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCC-------SHHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhc-------CHHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 358999999999765322 2234556 8999999986543 111111 1 1222334778 79999
Q ss_pred eCCCCCCcchhHHHHHHHHHHH---HH---------------------HHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 98 NKMDDPTVMWSEARYNECKDKI---LP---------------------YLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 98 NK~Dl~~~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
||+|+.... ..+++.+.+ .. .++..+. ..+++++||++|+|+++|.
T Consensus 179 NK~D~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 179 NKVDLLSEE----EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp CCGGGCCHH----HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHH
T ss_pred ecccccccc----cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHH
Confidence 999975321 111111111 11 1223321 2478999999999998764
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-09 Score=76.73 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=56.2
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChH---H----HHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFV---P----NMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~---~----~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+|.......+..++..+.+|||||+.++. . .+..+ .+.+|++++|+|++...+ .......+.
T Consensus 70 ~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~ 143 (270)
T 1h65_A 70 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAK 143 (270)
T ss_dssp SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHH
T ss_pred CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHH
Confidence 45777777778888899999999999997653 1 11122 247899999998854221 122233333
Q ss_pred HHHH-cC----CCcEEEEEeCCCCCC
Q psy10355 84 LAKT-AG----VKHLVVLINKMDDPT 104 (156)
Q Consensus 84 ~~~~-~~----~~~~ivv~NK~Dl~~ 104 (156)
.+.. .+ .| +++|+||+|+..
T Consensus 144 ~l~~~~~~~~~~~-iivV~nK~Dl~~ 168 (270)
T 1h65_A 144 AITDSFGKGIWNK-AIVALTHAQFSP 168 (270)
T ss_dssp HHHHHHCGGGGGG-EEEEEECCSCCC
T ss_pred HHHHHhCcccccC-EEEEEECcccCC
Confidence 3332 23 46 899999999864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-10 Score=84.73 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=62.4
Q ss_pred CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 40 HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 40 ~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
++++......+++++|++++|+|++++.+ ++ ......+..+...++| +++|+||+|+... ..... .++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~--s~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~----~~v~~-~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEF--NN---YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE----EEKKE-LERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCCH----HHHHH-HHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCC--CH---HHHHHHHHHHHhCCCC-EEEEEEcccCCCc----cccHH-HHHH
Confidence 56666666678999999999999986531 00 1112333444556788 7999999998631 11111 1223
Q ss_pred HHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 120 LPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 120 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...++.. +.+++++||++|+|+++|..
T Consensus 135 ~~~~~~~------g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDA------GYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHC------CCeEEEEECCCCCCHHHHHh
Confidence 3444444 35899999999999988653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.5e-10 Score=84.99 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=70.3
Q ss_pred cCceeeeeeEEEEeC-CeEEEEEeCCCCcC-------------hHHHHHhhhhcCC-EEEEEEeCCCCccccccCCCcch
Q psy10355 14 KGKTVEVGRAYFETD-RKHFTILDAPGHKS-------------FVPNMIGGTAQAD-LAVLVISARKGEFETGFDRGGQT 78 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~-~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d-~~ilvvD~~~~~~~~~~~~~~~~ 78 (156)
.|+........+... ...++||||||+.+ +...+..+++.++ ++++|+|++.+. ....
T Consensus 113 ~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~-------~~~~ 185 (353)
T 2x2e_A 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL-------ANSD 185 (353)
T ss_dssp TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG-------GGCH
T ss_pred CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc-------chhH
Confidence 455555444444443 57899999999742 3455667776666 455566776544 1222
Q ss_pred -HHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCC-CeEEEeecccCCCCccCC
Q psy10355 79 -REHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKD-LSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 79 -~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~Sa~~g~gi~~l~ 151 (156)
...+..+...+.| +++|+||+|+....... .. .++...+....+ .+++++||++|.|++.|.
T Consensus 186 ~~~i~~~~~~~~~~-~i~V~NK~Dl~~~~~~~--~~--------~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 186 ALKVAKEVDPQGQR-TIGVITKLDLMDEGTDA--RD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp HHHHHHHHCTTCTT-EEEEEECGGGSCTTCCC--HH--------HHTTCSSCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred HHHHHHHhCcCCCc-eEEEeccccccCcchhH--HH--------HHhCCcccccCCceEEEeCCcccccccccHH
Confidence 2345555556778 89999999986422110 11 111110100012 368999999999988763
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-10 Score=82.46 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH----HHH---H-HcCCCcEEEEEeC-CCCCCcch
Q psy10355 37 APGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA----MLA---K-TAGVKHLVVLINK-MDDPTVMW 107 (156)
Q Consensus 37 tpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~----~~~---~-~~~~~~~ivv~NK-~Dl~~~~~ 107 (156)
..|+.+++..|..|+.++|++|||||+++.. +++ ..+.+ ..+ . ..+.| ++|++|| .|+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDre---Rle----ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams 265 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHK---RHE----WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP 265 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTC---CCC----HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHh---HHH----HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC
Confidence 4588899999999999999999999998753 122 22211 111 1 14788 8999997 58765432
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCcc
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~ 149 (156)
. .++.+.+ ...... ..|.+.++||++|+|+.+
T Consensus 266 ~----~EI~e~L----~L~~l~--r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 266 C----FYLAHEL----HLNLLN--HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp H----HHHHHHT----TGGGGC--SCEEEEEEETTTCTTHHH
T ss_pred H----HHHHHHc----CCccCC--CcEEEEecccCCCcCHHH
Confidence 2 2222222 222121 468999999999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=78.95 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=70.2
Q ss_pred CceeeeeeEEEEeCC-eEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH-
Q psy10355 15 GKTVEVGRAYFETDR-KHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA- 85 (156)
Q Consensus 15 g~t~~~~~~~~~~~~-~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~- 85 (156)
.+|.......+..++ ..+.++||||+.+. .......+..++.+++++|++...+ .........+..+
T Consensus 189 ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~----~~ls~g~~el~~la 264 (416)
T 1udx_A 189 FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL----KTLETLRKEVGAYD 264 (416)
T ss_dssp TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH----HHHHHHHHHHHHHC
T ss_pred cceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCH----HHHHHHHHHHHHHh
Confidence 445566666666665 78999999998432 1223334567999999999962111 0001111111111
Q ss_pred H-HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 K-TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~-~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
. ..+.| .++++||+|+... ..+.. +...++.. +++++++||++++|+++|.
T Consensus 265 ~aL~~~P-~ILVlNKlDl~~~----~~~~~----l~~~l~~~------g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 265 PALLRRP-SLVALNKVDLLEE----EAVKA----LADALARE------GLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp HHHHHSC-EEEEEECCTTSCH----HHHHH----HHHHHHTT------TSCEEECCTTTCTTHHHHH
T ss_pred HHhhcCC-EEEEEECCChhhH----HHHHH----HHHHHHhc------CCeEEEEECCCccCHHHHH
Confidence 1 13568 6889999997632 12222 33333322 4689999999999988753
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-09 Score=76.92 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=59.1
Q ss_pred EEeCCCCc-ChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHH
Q psy10355 34 ILDAPGHK-SFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARY 112 (156)
Q Consensus 34 iiDtpG~~-~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~ 112 (156)
+-+.|||. +..+.+...+.++|+++.|+|+..+.. .........+ .+.| .++++||+|+.. ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL~~----~~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADKAD----AAVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGGSC----HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHHH--CCCC-EEEEEECcccCC----HHHH
Confidence 44679997 456788899999999999999987652 2211221222 4677 799999999863 1111
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 113 NECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+....+++.. +.+++++||++|.|+++|.
T Consensus 69 ----~~~~~~~~~~------g~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 69 ----QQWKEHFENQ------GIRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp ----HHHHHHHHTT------TCCEEECCTTTCTTGGGHH
T ss_pred ----HHHHHHHHhc------CCcEEEEECCCcccHHHHH
Confidence 1122333332 3588999999999998753
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-09 Score=84.51 Aligned_cols=68 Identities=26% Similarity=0.297 Sum_probs=51.5
Q ss_pred eEEEEEeCCCCcC-----------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEe
Q psy10355 30 KHFTILDAPGHKS-----------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLIN 98 (156)
Q Consensus 30 ~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~N 98 (156)
.++.||||||+.+ |...+..++..+|++++|+|++.... .......+..+...+.| +++|+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~------~~~~~~~l~~l~~~~~p-vilVlN 226 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI------SDEFSEAIGALRGHEDK-IRVVLN 226 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC------CHHHHHHHHHTTTCGGG-EEEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC------CHHHHHHHHHHHhcCCC-EEEEEE
Confidence 4799999999975 66778888999999999999976311 23444555555555667 899999
Q ss_pred CCCCCC
Q psy10355 99 KMDDPT 104 (156)
Q Consensus 99 K~Dl~~ 104 (156)
|+|+..
T Consensus 227 K~Dl~~ 232 (550)
T 2qpt_A 227 KADMVE 232 (550)
T ss_dssp CGGGSC
T ss_pred CCCccC
Confidence 999863
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-09 Score=78.66 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=58.1
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.++||||.... .......+|++++|+|+..+.. .+. +.. .....| .++++||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~-------~~~---i~~-~il~~~-~ivVlNK~Dl~~-- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDE-------LQG---IKR-GIIEMA-DLVAVTKSDGDL-- 226 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGG--
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchh-------HHH---hHH-HHHhcC-CEEEEeeecCCC--
Confidence 36788999999997532 2334578999999999976430 111 110 113567 588999999752
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGF-NAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..........+...++.... ......+++++||++|+|++.|.
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~ 270 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMW 270 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence 11111112223222221110 00013578999999999998764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-09 Score=81.07 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=63.4
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHH
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~ 110 (156)
.+.-+++| +++|.+....+++.++++++|+|+++... ++ ....... + .+.| +++|+||+|+......
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~--~~~l~~~---l--~~~p-iilV~NK~DLl~~~~~-- 116 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SF--IPGLPRF---A--ADNP-ILLVGNKADLLPRSVK-- 116 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GC--CSSHHHH---C--TTSC-EEEEEECGGGSCTTCC--
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--ch--hhHHHHH---h--CCCC-EEEEEEChhcCCCccC--
Confidence 34445554 78888888888899999999999987541 10 1111111 1 2567 8999999998643221
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 111 RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.+++.+...++..|+. ..+++.+||++|.|+++|.
T Consensus 117 -~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 117 -YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp -HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHH
Confidence 233444455555666542 2378999999999998764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-09 Score=80.96 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=63.8
Q ss_pred CCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHH
Q psy10355 39 GHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDK 118 (156)
Q Consensus 39 G~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 118 (156)
..++|.+.+..+.+.++++++|+|+++.. ..+...+... ..+.| +++|+||+|+...... .+.+++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--------~~~~~~l~~~-~~~~p-~ilV~NK~DL~~~~~~---~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--------GSWLPGLHRF-VGNNK-VLLVGNKADLIPKSVK---HDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--------HHCCTTHHHH-SSSSC-EEEEEECGGGSCTTSC---HHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--------ccHHHHHHHH-hCCCc-EEEEEEChhcCCcccC---HHHHHHH
Confidence 35778888888889999999999997632 1121122211 13677 8999999998643221 2334444
Q ss_pred HHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 119 ILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++..|+. ..+++.+||++|.|+++|.
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHH
Confidence 45555666542 2378999999999998764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-09 Score=75.58 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
.+..+.+|||||+..... .+....+.+++|+|+..+. ... +......+.| .++++||+|+...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~--------~~~---~~~~~~~~~~-~iiv~NK~Dl~~~-- 169 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD--------DVV---EKHPEIFRVA-DLIVINKVALAEA-- 169 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT--------THH---HHCHHHHHTC-SEEEEECGGGHHH--
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc--------hhh---hhhhhhhhcC-CEEEEecccCCcc--
Confidence 456899999999521110 1112568899999997653 111 1112223568 6899999997421
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
......++.+.+ +..+ ...+++++||++|+|+++|.
T Consensus 170 ~~~~~~~~~~~~----~~~~----~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 170 VGADVEKMKADA----KLIN----PRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp HTCCHHHHHHHH----HHHC----TTSEEEECBTTTTBTHHHHH
T ss_pred hhhHHHHHHHHH----HHhC----CCCeEEEeecCCCCCHHHHH
Confidence 001223333333 3332 14689999999999998753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.9e-08 Score=72.77 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=50.3
Q ss_pred eEEEEEeCCCC-------cChHHHHH-------hhhhcC-------------CEEEEEEeCCCC-ccccccCCCcchHHH
Q psy10355 30 KHFTILDAPGH-------KSFVPNMI-------GGTAQA-------------DLAVLVISARKG-EFETGFDRGGQTREH 81 (156)
Q Consensus 30 ~~~~iiDtpG~-------~~~~~~~~-------~~~~~~-------------d~~ilvvD~~~~-~~~~~~~~~~~~~~~ 81 (156)
..+++|||||+ +++..... .+++.. .+++++++++.+ + .+...+.
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~L-------d~~~~~~ 148 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL-------KPLDVAF 148 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSC-------CHHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCC-------CHHHHHH
Confidence 57999999998 44333222 333332 335566655442 3 2223333
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+. .+.+ +++|+||.|+.. .......++++...++.. +++++++||++| |++++.
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~------~~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEH------NIKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHT------TCCCCCCC----------C
T ss_pred HHHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHc------CCeEEecCCccc-cccHHH
Confidence 33332 3457 899999999763 222333445566666655 358899999999 998764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-08 Score=72.70 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCCcCh-HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHH
Q psy10355 37 APGHKSF-VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNEC 115 (156)
Q Consensus 37 tpG~~~~-~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 115 (156)
-|||... .+.+...+.++|+++.|+|+..+..... .... . + +.| .++++||+|+.. ....+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l~-l---l---~k~-~iivlNK~DL~~----~~~~~-- 65 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGVD-F---S---RKE-TIILLNKVDIAD----EKTTK-- 65 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTSC-C---T---TSE-EEEEEECGGGSC----HHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHHH-h---c---CCC-cEEEEECccCCC----HHHHH--
Confidence 4888643 4678888999999999999987652111 1111 1 1 677 799999999873 11111
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 116 KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
....+++.. +.++ ++||++|.|++.|.
T Consensus 66 --~~~~~~~~~------g~~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 66 --KWVEFFKKQ------GKRV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp --HHHHHHHHT------TCCE-EECCTTSCHHHHHH
T ss_pred --HHHHHHHHc------CCeE-EEECCCCcCHHHHH
Confidence 222334433 3467 99999999987653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=70.19 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=41.1
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcChHH-------HHHhhhhcCCEEEEEEeCCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKSFVP-------NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~~-------~~~~~~~~~d~~ilvvD~~~ 65 (156)
..++.|++...+.+.+.+ ..+.+|||||+.++.. ....+++.+|++++|+|+++
T Consensus 31 ~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 31 NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp --CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 345778888777777765 5799999999987642 24456799999999999976
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=69.59 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy10355 47 MIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKK 125 (156)
Q Consensus 47 ~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 125 (156)
....+.++|.+++|+|+..+.+ ... ....+..+...+++ .++|+||+|+.... ...+..+.+...++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~------~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~----~~~~~~~~~~~~y~~ 148 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSF------STALLDRFLVLVEANDIQ-PIICITKMDLIEDQ----DTEDTIQAYAEDYRN 148 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTC------CHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCEEEEEEeCCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEECCccCchh----hhHHHHHHHHHHHHh
Confidence 3356889999999999986652 111 22233334456888 69999999986421 100111223344444
Q ss_pred cCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 126 LGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 126 ~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.| .+++.+||++|.|++.|..
T Consensus 149 ~g------~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 149 IG------YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HT------CCEEECCHHHHTTCTTTGG
T ss_pred CC------CeEEEEecCCCCCHHHHHh
Confidence 44 4889999999999988754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-07 Score=71.15 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred eEEEEEeCCCCcChHH------HH-------------------HhhhhcCC--EEEEEEeCC-CCccccccCCCcchHHH
Q psy10355 30 KHFTILDAPGHKSFVP------NM-------------------IGGTAQAD--LAVLVISAR-KGEFETGFDRGGQTREH 81 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~------~~-------------------~~~~~~~d--~~ilvvD~~-~~~~~~~~~~~~~~~~~ 81 (156)
..+++|||||+..+.. .. ...+..++ +++++++++ .++ .+.....
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-------~~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-------CHHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-------CHHHHHH
Confidence 3689999999876421 00 11223344 455555554 343 2333344
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+..+. .+++ +|+|+||+|+.. ...+...++.+...+...+ ++++.+||+++.+++.+
T Consensus 161 lk~L~-~~v~-iIlVinK~Dll~----~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 161 MKRLH-EKVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHT-TTSE-EEEEEESTTSSC----HHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHh-ccCc-EEEEEEcccCcc----HHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 44443 3677 899999999863 3335555566666666654 57899999999988753
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-07 Score=68.99 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=62.0
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
.-.+++|+++..+.+.+.+.++.++||||..+ ........++.||++++|+|++++. .+...+..
T Consensus 100 ~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--------~~~~~i~~ 171 (376)
T 4a9a_A 100 AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--------HHKQIIEK 171 (376)
T ss_dssp GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--------HHHHHHHH
T ss_pred cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--------HHHHHHHH
Confidence 44579999999999999999999999999753 2345677889999999999997643 22222222
Q ss_pred HHHHc-----CCCcEEEEEeCCCCC
Q psy10355 84 LAKTA-----GVKHLVVLINKMDDP 103 (156)
Q Consensus 84 ~~~~~-----~~~~~ivv~NK~Dl~ 103 (156)
.+... ..| .++++||+|..
T Consensus 172 EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 172 ELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp HHHHTTEEETCCC-CCEEEEECSSS
T ss_pred HHHHhhHhhccCC-hhhhhhHhhhh
Confidence 33322 346 58899999963
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.1e-07 Score=66.89 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred eCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 27 TDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 27 ~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
..+..+.|+||||...-.. .....+|.+++|+|+..+. . . ...... . ...+ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~-~--~---~~i~~~---i--~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD-E--L---QGIKKG---I--FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTT---H--HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc-c--H---HHHHHH---H--hccc-cEEEEEchhccCc-
Confidence 3688999999999865322 2346899999999986432 0 0 000000 0 1235 3667899996421
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccCC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+.+...+....-. .....+++++||++|+|+++|.
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~ 252 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLW 252 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence 111122223333222222100 0013478999999999998764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-06 Score=65.56 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
...+.+|||||+.++ .......++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998764 3445667899999999999976
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=67.07 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcE-EEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHL-VVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~NK~ 100 (156)
.++.+.||||||.... ....... +..+|.+++|+|+..+. ........+... +| + ++++||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~-i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VD-VASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HC-CCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cC-ceEEEEeCC
Confidence 6789999999998642 2222222 23789999999998764 123333333322 45 3 7899999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 975
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.07 E-value=7.5e-06 Score=62.33 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=49.5
Q ss_pred hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC
Q psy10355 50 GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN 129 (156)
Q Consensus 50 ~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (156)
.+.++|.+++| |+..+.+ . .......+..+...+++ .++|+||+|+... .....+++ ....+...|
T Consensus 127 i~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~----~~~~~~~~-~~~~y~~~G-- 192 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD----EGMDFVNE-QMDIYRNIG-- 192 (358)
T ss_dssp EEECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH----HHHHHHHH-HHHHHHTTT--
T ss_pred HHhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccCCCc----hhHHHHHH-HHHHHHhCC--
Confidence 35789998876 4444321 0 01122333444457888 5999999998632 11111222 223344443
Q ss_pred CCCCCeEEEeecccCCCCccCC
Q psy10355 130 AAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 130 ~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++++++||.+|.|++.|.
T Consensus 193 ----~~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 193 ----YRVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CCEEECBTTTTBTHHHHH
T ss_pred ----CcEEEEecCCCcCHHHHH
Confidence 578999999999987653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.1e-05 Score=58.84 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCCcChHH----H--HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----N--MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~--~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||...... . .......+|.+++|+|+..+. ............ .+...+++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~~-~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKEA-TPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHHS-CTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHhh-CCCeEEEEECCC
Confidence 457899999999644211 1 112234579999999997753 233344444433 332578999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... - . +..+.... +.|+..++. |++++.|.
T Consensus 251 ~~~~g--G----~----~ls~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAKG--G----G----ALSAVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSSH--H----H----HHHHHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Ccccc--c----H----HHHHHHHH------CCCEEEEEc--CCChHHhh
Confidence 65321 1 1 11222222 457777775 99998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0002 Score=53.08 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCeEEEEEeCCCCcC--hHHHHH------hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKS--FVPNMI------GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~--~~~~~~------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.++.+.++||||... ...... .....+|.+++|+|+..+ .+.......... ..+-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999876 322211 234578999999999653 233333443333 35535779999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.... ... +..+.... +.|+..++ +|++++.|.
T Consensus 249 ~D~~~~------~g~----~~~~~~~~------~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGTAK------GGG----ALSAVAAT------GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGCTT------HHH----HHHHHHTT------TCCEEEEE--CSSSTTCEE
T ss_pred CCCCcc------hHH----HHHHHHHH------CcCEEEEe--CCCChhhcc
Confidence 995421 111 11222333 35776665 688887653
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.9e-07 Score=68.34 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=63.5
Q ss_pred hhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HHHHhhh---hcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 12 REKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PNMIGGT---AQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~---~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
..+|+|.+.....+. ..+.++||||..... ......+ ...+.+++++++....+..++. .
T Consensus 197 ~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~---~---- 266 (369)
T 3ec1_A 197 YFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA---R---- 266 (369)
T ss_dssp ECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE---E----
T ss_pred CCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE---E----
Confidence 355778776654432 248999999975321 1112222 6679999999985432111110 0
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+...+.| +++++||+|...........+. + -+..| ..+.|.++..+.++.+++
T Consensus 267 l~~l~~~~~~-~~~v~~k~d~~~~~~~~~~~~~----~---~~~~g------~~l~p~~~~~~~~~~~l~ 322 (369)
T 3ec1_A 267 LDYIKGGRRS-FVCYMANELTVHRTKLEKADSL----Y---ANQLG------ELLSPPSKRYAAEFPPLV 322 (369)
T ss_dssp EEEEESSSEE-EEEEECTTSCEEEEEGGGHHHH----H---HHHBT------TTBCSSCGGGTTTCCCEE
T ss_pred EEEccCCCce-EEEEecCCcccccccHHHHHHH----H---HHhcC------CccCCCCchhhhhccCcE
Confidence 1112234567 8999999997543322221121 2 12222 356677777776666554
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.3e-05 Score=56.50 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=51.0
Q ss_pred EEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHH
Q psy10355 31 HFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~ 110 (156)
.+.++|++|.-... ...-...+..+.++|+..+.. . ..... . ..+.| .++++||+|+... ...
T Consensus 120 d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~--~---~~~~~---~---~~~~~-~iiv~NK~Dl~~~--~~~ 182 (226)
T 2hf9_A 120 DLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD--T---IEKHP---G---IMKTA-DLIVINKIDLADA--VGA 182 (226)
T ss_dssp SEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT--T---TTTCH---H---HHTTC-SEEEEECGGGHHH--HTC
T ss_pred CEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh--h---Hhhhh---h---HhhcC-CEEEEeccccCch--hHH
Confidence 67888888842111 011123355677777543220 0 00111 1 13567 6999999997421 001
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 111 RYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+ +...++..+ ...+++++||++|+|+++|.
T Consensus 183 ~~~~----~~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 183 DIKK----MENDAKRIN----PDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp CHHH----HHHHHHHHC----TTSEEEECCTTTCTTHHHHH
T ss_pred HHHH----HHHHHHHhC----CCCeEEEEEecCCCCHHHHH
Confidence 1222 222333332 14689999999999998763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0003 Score=54.84 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCCCcC------hHHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKS------FVPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~------~~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.++.+.|+||||... +...... .....+.+++|+|+..+. ............-.+ ..+++||
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~-~gVIlTK 247 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI-GSVIITK 247 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS-EEEEEEC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC-cEEEEec
Confidence 467899999999644 2222222 122468999999997652 334444444433234 5789999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.... . .. ........ +.|+..++. |++++.|.
T Consensus 248 lD~~a~--~----G~----als~~~~~------g~Pi~fig~--Ge~v~dL~ 281 (433)
T 3kl4_A 248 MDGTAK--G----GG----ALSAVVAT------GATIKFIGT--GEKIDELE 281 (433)
T ss_dssp GGGCSC--H----HH----HHHHHHHH------TCEEEEEEC--CSSSSCEE
T ss_pred cccccc--c----hH----HHHHHHHH------CCCEEEEEC--CCChHhCc
Confidence 996421 1 11 11112222 458877775 99887654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.5e-07 Score=67.82 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=44.4
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChH-------HHHHhh---hhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFV-------PNMIGG---TAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~---~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
...+|+|.+.....+. ..+.++||||..+.. ...... ....+.+++++++....+..++.
T Consensus 195 ~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~------- 264 (368)
T 3h2y_A 195 SHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA------- 264 (368)
T ss_dssp ECCC----CEEEEESS---SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-------
T ss_pred CCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-------
Confidence 3455777766654432 238999999985421 111111 35678899999985332111110
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
.+..+...+.| +++++||+|...
T Consensus 265 ~~d~l~~~~~~-~~~v~nk~d~~~ 287 (368)
T 3h2y_A 265 RFDYVSGGRRA-FTCHFSNRLTIH 287 (368)
T ss_dssp EEEEEESSSEE-EEEEECTTSCEE
T ss_pred EEEEecCCCce-EEEEecCccccc
Confidence 01112224567 899999999764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00066 Score=52.92 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCcChHHHHH------hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC-CcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMI------GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV-KHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~NK~ 100 (156)
.++.+.|+||||......... ..+..+|.+++|+|+..+. .......... .+. +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 567899999999875422211 1223689999999997642 2222222222 234 5358899999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 964
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00023 Score=54.84 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=32.5
Q ss_pred HhhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcChHH-------HHHhhhhcCCEEEEEEeCCC
Q psy10355 11 KREKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKSFVP-------NMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~~-------~~~~~~~~~d~~ilvvD~~~ 65 (156)
...+++|++...+.+.+.+ ..+.+|||||+.++.. .+..+++.+|++++|+|+.+
T Consensus 50 ~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 50 ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3456778887777776654 3599999999977543 56788899999999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=51.11 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred EEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHH
Q psy10355 56 LAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILP 121 (156)
Q Consensus 56 ~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 121 (156)
++.|++|+..+. ...+.+++..+. .+.| +|+++||+|... ......+++.+..
T Consensus 151 ~v~fI~d~~~~l-------~~~Dieilk~L~-~~~~-vI~Vi~KtD~Lt----~~E~~~l~~~I~~ 203 (427)
T 2qag_B 151 CLYFIAPTGHSL-------KSLDLVTMKKLD-SKVN-IIPIIAKADAIS----KSELTKFKIKITS 203 (427)
T ss_dssp EEEEECCCC----------CHHHHHHHHHTC-SCSE-EEEEESCGGGSC----HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC-------CHHHHHHHHHHh-hCCC-EEEEEcchhccc----hHHHHHHHHHHHH
Confidence 466677776665 244455555554 5667 999999999763 2234444554544
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0045 Score=44.61 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE-EEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV-VLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~NK~Dl 102 (156)
+.+.+.|+|||+...........+..+|.+|+|+.+.... .......+..+...+.+ ++ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT-------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC-------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch-------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 5678999999987543222223334689999999876543 12334455555566777 55 89999883
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.003 Score=44.67 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
..+.+.++|||+.... .+...+..+|.+++++.++... ..........+...+.+.+.+++||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNS-------IKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHH-------HHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHH-------HHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 5678999999986543 4556678899999999875422 122333444555667666789999999
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.008 Score=46.81 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHh------hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIG------GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~------~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.++.+.|+||||...+...... ....++.+++|+|+..+. .......... ..++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999997654222221 234678999999997642 2233333222 22333 4589999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 964
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0057 Score=43.05 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.++|||+... ......+..+|.+++|+.+.... .......+..+...+.+.+-+++|+.+.
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISC-------LTDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHH-------HHHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCccc-------HHHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 347799999998654 45567778899999999875432 1233444455555566656789999995
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0078 Score=43.11 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
..+.+.|+|||+... ......+..+|.+|+|+.+.... .......+..+...+.+.+-+++|+++.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISS-------ITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHH-------HHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhH-------HHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 357899999998654 45666778899999999875422 1233344455555566646689999995
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.023 Score=38.91 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-----CCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-----GVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~NK~Dl 102 (156)
+.+.+.++|||+.. ...+...+..+|.+++++.++.. .......+..+... +.+ +.+++|++|.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------DFSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------THHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------HHHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 35789999999976 34566777889999999987542 11122333444332 345 6889999994
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=42.00 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.++|+|||+..... ......+.+|.+|+|+.+.... .......+..+...+.+.+-+|+||+|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~-------~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNT-------LKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSB-------HHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCc-------HHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 679999999975432 2344557799999999986543 23444556666777776567899999953
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=41.06 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCC-cChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc-CCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGH-KSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA-GVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~-~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivv~NK~Dl~ 103 (156)
..+.+.++|||+. ... .+...+..+|.+|+++.++... .......+..+... +.+ +.+++|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALA-------LDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHH-------HHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchh-------HHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999997 433 3456677899999999875432 12333444455542 566 78999999953
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.076 Score=37.90 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH---cCCCcE-EEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT---AGVKHL-VVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-ivv~NK~Dl 102 (156)
..+.+.++|||+.... .+..++..+|.+|+++.+..... .......+.+..+.. .+.+ + -+++|+.|.
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~----~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~~~~ 181 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYAL----EGVAGLLATLEEVRAGLNPRLR-LLGILVTMYDG 181 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHH----HHHHHHHHHHHHHHHHTCTTCE-EEEEEEESBCT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHH----HHHHHHHHHHHHHHHHhCCCce-EEEEEEEeECC
Confidence 5688999999997543 24456678999999998854321 000111222222222 2445 4 379999985
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.019 Score=44.20 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=42.4
Q ss_pred hhcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 12 REKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+++|+++..+.+...+ ..+.+||+||... +.......++.+|++++|+|+..
T Consensus 50 ~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 50 NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345778888888888765 4689999999643 34467778899999999999864
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.048 Score=40.20 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=45.7
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.++|+|||+..... ........+|.+|+|+.+.... .......+..+...+.+.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~-------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNT-------AKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSC-------TTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCCh-------HHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 679999999975432 2333456799999999886543 24455566666666766344789999953
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.022 Score=40.18 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--CCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--VKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~NK~Dl~ 103 (156)
.+.+.++|||+.... .....+..+|.+++++.+.... .......+..+...+ ...+-+++|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQS-------LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHH-------HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHH-------HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 477999999986532 4556678899999999875422 123344445555444 33478899999953
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.029 Score=40.80 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=43.9
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
.+.++|+|||+..... ........+|.+|+|+.+.... .......+..+...+.+.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~-------~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNN-------KDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCC-------HHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCc-------HHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3679999999965432 2333446789999999986543 23344455556666777333899999953
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.12 Score=38.68 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCCcCh----HHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCC
Q psy10355 29 RKHFTILDAPGHKSF----VPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMD 101 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~----~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~D 101 (156)
++.+.++||+|.... ...... ..-..|-.++++|+..+ .+....+..+. ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 456788999997432 222111 11246889999998664 23444444444 34544 67999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..... .. +..+.... +.|+..++ +|++++.|.
T Consensus 280 ~~a~~-G~---------~l~~~~~~------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 ADARG-GA---------ALSISYVI------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp GCSCC-HH---------HHHHHHHH------TCCEEEEE--CSSSTTCEE
T ss_pred Cccch-hH---------HHHHHHHH------CCCEEEEe--CCCCccccc
Confidence 53221 11 11222333 35777777 888887764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.18 Score=37.05 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=37.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHhh--hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSF----VPNMIGG--TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~----~~~~~~~--~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.++||||.... ....... ...++.+++|+|+..+. +.......... ..+..-+++||+|
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~---------~~~~~~~~~~~-~~~i~givlnk~d 248 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDE-KVGVTGLVLTKLD 248 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHH-HTCCCEEEEECGG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH---------HHHHHHHHHhh-cCCCCEEEEECCC
Confidence 4678999999986432 1111111 12478889999986431 22233332222 1231346899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 249 ~~ 250 (295)
T 1ls1_A 249 GD 250 (295)
T ss_dssp GC
T ss_pred CC
Confidence 54
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.055 Score=38.77 Aligned_cols=65 Identities=8% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc--CCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA--GVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~NK~Dl 102 (156)
..+.+.++|||+... ..+..++..+|.+|+++.+.... .......+..+... +.+ +.+++|++..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s-------~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWA-------VESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTH-------HHHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHH-------HHHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 457899999998653 34566677799999999885533 12233344444444 345 6789999953
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.084 Score=40.83 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=59.6
Q ss_pred EEEEEeCCCCcCh---HHHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 31 HFTILDAPGHKSF---VPNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 31 ~~~iiDtpG~~~~---~~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
.++++|+||+..- ...... .+...+..++ ++...+. .+...+...+...+.| +++|+||.|+..-
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecCccccc
Confidence 6899999997421 111111 2334455554 7765422 4556666777777888 8999999996411
Q ss_pred c-----hhHHHHHHHHHHHHHHH----HHcCCCCCCCCeEEEeec--ccCCCCccC
Q psy10355 106 M-----WSEARYNECKDKILPYL----KKLGFNAAKDLSFMPCSG--ELEKNPLLL 150 (156)
Q Consensus 106 ~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~Sa--~~g~gi~~l 150 (156)
+ .+.....++.+.+..+. ...+.. ...+|++|+ +.+.|++.|
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHH
Confidence 1 11111233344444433 232221 236899999 666667654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.068 Score=41.50 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCcChH----HHH--HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFV----PNM--IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~----~~~--~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+.|+||||..... ... ....-.+|.+++|+|+..+. .....+..... ..+..-+++||+|
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~-~l~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDE-KVGVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHH-HTCCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHh-cCCceEEEEeCcC
Confidence 56789999999975431 111 11223578999999986542 22333333322 2231356899999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 249 ~~ 250 (425)
T 2ffh_A 249 GD 250 (425)
T ss_dssp GC
T ss_pred Cc
Confidence 53
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.029 Score=39.88 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC--------CCcEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG--------VKHLVVLINKM 100 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ivv~NK~ 100 (156)
.+.+.++|||+... ..+...+..+|.+++|+.+.... .......+..+...+ ...+-+++|+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSS-------VRDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHH-------HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhH-------HHHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 68899999998644 35667778899999999875422 122223333333222 12367899999
Q ss_pred C
Q psy10355 101 D 101 (156)
Q Consensus 101 D 101 (156)
+
T Consensus 184 ~ 184 (260)
T 3q9l_A 184 N 184 (260)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.1 Score=37.84 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCEEEEEEeCC-CCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCC
Q psy10355 54 ADLAVLVISAR-KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGF 128 (156)
Q Consensus 54 ~d~~ilvvD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (156)
+.++++++|.. .+. .+.+.+.+..+... .+ +|+++||+|... .......++.+...++..+.
T Consensus 112 al~~lllldep~~gL-------~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt----~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 112 VHCCLYFISPTGHSL-------RPLDLEFMKHLSKV-VN-IIPVIAKADTMT----LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCEEEEEECCCSSSC-------CHHHHHHHHHHHTT-SE-EEEEETTGGGSC----HHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeEEEecCCCcC-------CHHHHHHHHHHHhc-Cc-EEEEEeccccCC----HHHHHHHHHHHHHHHHHcCc
Confidence 57889999965 444 35556666666655 66 899999999764 23345556666655565543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.065 Score=39.97 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHh-------hh-----hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIG-------GT-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~-------~~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.++.+.|+||||.......... .+ ..+|.+++|+|+..+. +......... ...+-.=+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~---------~~l~~~~~~~-~~~~i~Gv 259 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ---------NGVIQAEEFS-KVADVSGI 259 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH---------HHHHHHHHHT-TTSCCCEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH---------HHHHHHHHHh-hcCCCcEE
Confidence 5688999999997654221111 11 2378999999996432 2222222222 12331246
Q ss_pred EEeCCCCC
Q psy10355 96 LINKMDDP 103 (156)
Q Consensus 96 v~NK~Dl~ 103 (156)
++||+|..
T Consensus 260 Vltk~d~~ 267 (320)
T 1zu4_A 260 ILTKMDST 267 (320)
T ss_dssp EEECGGGC
T ss_pred EEeCCCCC
Confidence 89999953
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.089 Score=38.28 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH------cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT------AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ivv~NK~D 101 (156)
+.+.+.|+|||+..... ...++..+|.+|+++.+..... ......+..+.. .+.+.+-+++|+.|
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 34789999999975542 3445567999999998754321 222222222222 24552347999999
Q ss_pred C
Q psy10355 102 D 102 (156)
Q Consensus 102 l 102 (156)
.
T Consensus 224 ~ 224 (298)
T 2oze_A 224 T 224 (298)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.1 Score=38.65 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCCCcChHHHH-------Hhhh-----hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPNM-------IGGT-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~-------~~~~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.+..+.++||||........ ...+ ..++.+++|+|+..+ .+......... ..++. -
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---------~~~l~~a~~~~~~~~i~--g 253 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---------QNGLVQAKIFKEAVNVT--G 253 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHSCCC--E
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---------HHHHHHHHHHHhcCCCC--E
Confidence 45779999999964332211 1111 236889999999643 12222222222 33444 5
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
+++||+|..
T Consensus 254 vVlTk~D~~ 262 (306)
T 1vma_A 254 IILTKLDGT 262 (306)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCc
Confidence 688999954
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.12 Score=39.55 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCC----cEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVK----HLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ivv~NK~D 101 (156)
+.+.++|+|||+... ..+..++..+|.+|+|+.++...+.............+..+...+.+ -++.++|+.+
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 457899999998764 44666778999999999774321000000012223344444444432 1456889988
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.44 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
.+.+.|+|||+.. ...+..++..+|.+|+++.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4679999999975 455677888999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=92.76 E-value=2 Score=31.65 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred CeEEEEEeCCCCcChHH----HH---H-----hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEE
Q psy10355 29 RKHFTILDAPGHKSFVP----NM---I-----GGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVV 95 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~----~~---~-----~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 95 (156)
+..+.++||+|...... .. . ......+.+++++|+..+. +....+..+. ..+.. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---------~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---------NGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---------HHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---------HHHHHHHHHHHHcCCc--EE
Confidence 34578999999643211 11 1 1123467789999987653 3344444443 34655 67
Q ss_pred EEeCCCCC
Q psy10355 96 LINKMDDP 103 (156)
Q Consensus 96 v~NK~Dl~ 103 (156)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 99999964
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=92.45 E-value=0.26 Score=39.99 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHhhhhcC-CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 29 RKHFTILDAPGHKS-------------FVPNMIGGTAQA-DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-------------~~~~~~~~~~~~-d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
.-.+.++|.||... .......++... ..+++++++..+.. .......+..+...+.+ .|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a------~~~~l~la~~v~~~g~r-tI 218 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA------TTEALSMAQEVDPEGDR-TI 218 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT------TCHHHHHHHHHCSSCCS-EE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc------cHHHHHHHHHHhhcCCc-eE
Confidence 35699999998643 122333334443 45666666654431 12233444544445667 79
Q ss_pred EEEeCCCCCCc
Q psy10355 95 VLINKMDDPTV 105 (156)
Q Consensus 95 vv~NK~Dl~~~ 105 (156)
+|+||.|+...
T Consensus 219 ~VlTK~Dlv~~ 229 (608)
T 3szr_A 219 GILTKPDLVDK 229 (608)
T ss_dssp EEEECGGGSSS
T ss_pred EEecchhhcCc
Confidence 99999997643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.47 Score=37.63 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCcChHHH-------HHhhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEE
Q psy10355 28 DRKHFTILDAPGHKSFVPN-------MIGGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLV 94 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-------~~~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 94 (156)
.++.+.++||+|....... ....++ ..+-++||+|++.+. +....+..+. ..++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC--E
Confidence 4567999999997533211 111111 245789999997753 2333333333 34555 5
Q ss_pred EEEeCCCCC
Q psy10355 95 VLINKMDDP 103 (156)
Q Consensus 95 vv~NK~Dl~ 103 (156)
+++||+|-.
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 689999953
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=37.77 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCCcChHHH----HHhhhh--cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN----MIGGTA--QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~----~~~~~~--~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.+..+.|+||||....... ....+. ..+.+++|+|++.+. .............+.. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--------~~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--------EDMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--------HHHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--------HHHHHHHHHHhcCCCC--EEEEeCCC
Confidence 5678999999997644221 222222 356789999987642 1112222212122333 45679999
Q ss_pred CC
Q psy10355 102 DP 103 (156)
Q Consensus 102 l~ 103 (156)
..
T Consensus 251 ~~ 252 (296)
T 2px0_A 251 ET 252 (296)
T ss_dssp TC
T ss_pred cc
Confidence 64
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.72 Score=31.75 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCcCh--H--HHHHhhhhc-CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSF--V--PNMIGGTAQ-ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~--~--~~~~~~~~~-~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++||||.... . ......... .+.+|+|+.+.... ..+....+..+...+.+-.-+++|++|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~-------~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGC-------INHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTH-------HHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCc-------HHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 4578999999976421 0 011111122 23477888774432 1333444455555667633478999994
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=1.5 Score=32.88 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=45.4
Q ss_pred CCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc--chhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10355 54 ADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV--MWSEARYNECKDKILPYLKKLGFNAA 131 (156)
Q Consensus 54 ~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (156)
.+.+++|.-+..-. .......+..+...++|..-+|+|++..... .+-.......++.+..+.+..+-.
T Consensus 237 ~~~~vlV~~p~~~~-------~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 307 (349)
T 3ug7_A 237 RTAFRLVVIPEEMS-------ILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDK-- 307 (349)
T ss_dssp TEEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTS--
T ss_pred CceEEEEECCCccH-------HHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCC--
Confidence 36788888664322 2445566677778899955789999985321 111111222233344444444321
Q ss_pred CCCeEEEeecccCCCCcc
Q psy10355 132 KDLSFMPCSGELEKNPLL 149 (156)
Q Consensus 132 ~~~~~i~~Sa~~g~gi~~ 149 (156)
..-.+|.....-.|++.
T Consensus 308 -~l~~iPl~~~e~~g~~~ 324 (349)
T 3ug7_A 308 -VIAYVPLLRTEAKGIET 324 (349)
T ss_dssp -EEEEEECCSSCSCSHHH
T ss_pred -cEEEecCCCCCCCCHHH
Confidence 12345665555555443
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=90.10 E-value=0.41 Score=36.44 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~ 64 (156)
+.+.++|+|||+.... .+..++..+|.+|+++.+.
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPA 277 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCS
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 4678999999987643 3556677899999999764
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=89.15 E-value=0.3 Score=34.75 Aligned_cols=68 Identities=15% Similarity=0.014 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDD 102 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl 102 (156)
+.+.+.++||||....... .......+|.+++++.+.... .......+..+.. .+.+.+-+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMA-------LYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHH-------HHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhh-------HHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999996432111 111224689999999874322 1122223333332 244534679999873
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=88.64 E-value=0.4 Score=34.67 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCcChHHH-HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPN-MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMD 101 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~D 101 (156)
+.+.+.|+||||....... .......+|.+++++.+.... .......+..+.. .+.+.+-+++|+.+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMA-------MYAANNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHH-------HHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHH-------HHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3578999999986432111 112225689999998774321 0112222232222 24553457899987
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=0.33 Score=39.31 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.2
Q ss_pred CCeEEEEEeCCCCcCh
Q psy10355 28 DRKHFTILDAPGHKSF 43 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~ 43 (156)
.+..+.++||||..+.
T Consensus 89 ~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDV 104 (592)
T ss_dssp TTCEEEEEEECCBCCG
T ss_pred CCceEEEecCCCcCcc
Confidence 5678999999998653
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=85.58 E-value=4 Score=30.04 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 55 DLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 55 d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+++|.-+..-. .......+..+...|++..-+|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~-------~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMS-------IYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccH-------HHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 4788887664322 24455666777788999557899999853
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=84.12 E-value=1.4 Score=35.30 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=28.7
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.++.+++|+.+.... .......+..+...|++..-+|+|++.-
T Consensus 489 ~~~~vvlV~~p~~~~-------~~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 489 ERTKVLLVTLPETTP-------VLEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp TTEEEEEEECSSHHH-------HHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred CCCEEEEEeCCCccH-------HHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 457888888764322 1334455566667787756789999984
|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
Probab=81.55 E-value=1.9 Score=32.39 Aligned_cols=42 Identities=10% Similarity=-0.093 Sum_probs=29.6
Q ss_pred cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCC
Q psy10355 53 QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 53 ~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~D 101 (156)
.++.+++|+.+..-. .......+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~s-------i~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLS-------LYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHH-------HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcch-------HHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 568889998874322 134555666677778885678999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 156 | ||||
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 3e-47 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-36 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 2e-33 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 6e-29 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 4e-26 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 3e-19 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 4e-14 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 6e-08 |
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 151 bits (382), Expect = 3e-47
Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+ +RE+G T+++ FET + T++DAPGH+ F+ NMI GT+QAD A+L+I+ G
Sbjct: 61 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 120
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
EFE G + GQTREHA+LA T GV+ L+V +NKMD +V W E+R+ E + ++KK+
Sbjct: 121 EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKV 178
Query: 127 GFNAAKDLSFMPCSGELEKN 146
G+N K + F+P SG N
Sbjct: 179 GYN-PKTVPFVPISGWNGDN 197
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 122 bits (307), Expect = 2e-36
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++R +G T+ +ET ++H++ +D PGH ++ NMI G AQ D A+LV+SA G
Sbjct: 44 KAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 103
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH +LA+ GV ++VV +NK+D ++ + + ++ L +
Sbjct: 104 PMP-------QTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQY 153
Query: 127 GFNAAKDLSFMPCSGELEKNPL 148
F ++ + S L +
Sbjct: 154 EFP-GDEVPVIRGSALLALEQM 174
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 115 bits (289), Expect = 2e-33
Identities = 62/135 (45%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+++RE+G T+ + FET + FTI+DAPGH+ FV NMI G +QAD A+LV+SA+KG
Sbjct: 58 RLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 117
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
E+E G GQTREH +LAKT G+ L+V +NKMD + E RY E D++ +++
Sbjct: 118 EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY 177
Query: 127 GFNAAKDLSFMPCSG 141
GFN + F+P
Sbjct: 178 GFN-TNKVRFVPVVA 191
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 103 bits (257), Expect = 6e-29
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++R +G T+ + T +H+ D PGH +V NMI GTA D +LV++A G
Sbjct: 43 NAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG 102
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTREH +LA+ GV+H+VV +NK D + + +I L +
Sbjct: 103 PMP-------QTREHLLLARQIGVEHVVVYVNKAD---AVQDSEMVELVELEIRELLTEF 152
Query: 127 GFNAAKDLSFMPCSG 141
G+ ++ + S
Sbjct: 153 GYK-GEETPIIVGSA 166
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 96.8 bits (240), Expect = 4e-26
Identities = 85/136 (62%), Positives = 111/136 (81%), Gaps = 1/136 (0%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++REKGKTVEVGRAYFET+ + F++LDAPGHK +V NMI G +QAD+ VLVISAR+G
Sbjct: 79 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 138
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
EFE GF+RGGQTREHA+LA+T G+ HLVV+INKMD+P+V WSE RY EC DK+ +L+++
Sbjct: 139 EFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 198
Query: 127 -GFNAAKDLSFMPCSG 141
G+N+ D+ +MP S
Sbjct: 199 AGYNSKTDVKYMPVSA 214
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 78.7 bits (193), Expect = 3e-19
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
L+ +RE+G T++V YF T ++ F I D PGH+ + NM G + DLA++++ AR G
Sbjct: 66 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL 126
QTR H+ +A G+KH+VV INKMD + K L + + +
Sbjct: 126 VQT-------QTRRHSYIASLLGIKHIVVAINKMDLNGFDER--VFESIKADYLKFAEGI 176
Query: 127 GFNAAKDLSFMPCSG 141
F ++F+P S
Sbjct: 177 AFK-PTTMAFVPMSA 190
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 65.5 bits (159), Expect = 4e-14
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66
++ Q+RE+G T+ I+DAPGH F + D A++V + +G
Sbjct: 48 FMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 107
Query: 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119
Q+ A+ V + NKMD ++++
Sbjct: 108 -------VEPQSETVWRQAEKYKVPRIAF-ANKMDKTGADLWL-VIRTMQERL 151
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.2 bits (114), Expect = 6e-08
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 25/129 (19%)
Query: 7 WLRQKREKGKTVEVGRAYFETDRKH----------------FTILDAPGHKSFVPNMIGG 50
+ ++E+G T++ ++ ++D+PGH F +
Sbjct: 57 TRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAA 116
Query: 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEA 110
D A++V+ +G QT A +K +VV INK+D + +
Sbjct: 117 LRVTDGALVVVDTIEG-------VCVQTETVLRQALGERIKPVVV-INKVDRALLELQVS 168
Query: 111 RYNECKDKI 119
+
Sbjct: 169 -KEDLYQTF 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.97 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.96 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.95 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.95 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.94 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.87 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.87 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.86 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.86 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.66 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.63 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.62 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.61 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.61 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.61 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.6 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.6 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.6 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.6 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.58 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.56 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.56 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.56 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.54 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.53 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.52 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.52 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.49 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.47 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.44 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.43 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.37 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.37 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.37 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.28 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.23 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.14 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.12 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.09 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.07 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.98 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 98.96 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.72 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.58 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.48 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.2 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.15 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 97.84 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.59 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.2 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.18 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.14 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.59 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.24 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.24 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 93.92 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.66 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.69 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.08 | |
| d1s2da_ | 167 | Purine transdeoxyribosylase {Lactobacillus helveti | 82.13 |
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-30 Score=186.21 Aligned_cols=144 Identities=43% Similarity=0.714 Sum_probs=130.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
+|..++||+||+|++.....+.+++++++|+|||||.+|.+.+.+++..+|++|+|||+..|.++.++...+|+.+++..
T Consensus 59 ~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~ 138 (239)
T d1f60a3 59 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL 138 (239)
T ss_dssp HHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH
T ss_pred cccchhhhcceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999998877777778899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...|+|++|+++||||+. ++++.++.++.+++..++...++... .++++|+||++|.|+....
T Consensus 139 ~~~~gv~~iiv~iNKmD~~--~~d~~~~~~~~~el~~~l~~~~~~~~-~i~~ipiSa~~G~ni~~~s 202 (239)
T d1f60a3 139 AFTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFIKKVGYNPK-TVPFVPISGWNGDNMIEAT 202 (239)
T ss_dssp HHHTTCCEEEEEEECGGGG--TTCHHHHHHHHHHHHHHHHHHTCCGG-GCCEEECCTTTCBTTTBCC
T ss_pred HHHcCCCeEEEEEECCCCC--CCCHHHHHHHHHHHHHHHHhcCCCCC-cEEEEEEEccCCCcceecc
Confidence 9999999888999999965 45667789999999999999888653 6789999999999987654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.6e-28 Score=171.83 Aligned_cols=131 Identities=31% Similarity=0.482 Sum_probs=116.9
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+.++|++||+|++.....+.+++++++|+|||||.+|.+.+.++++.+|++|+|+|+.+|. ..|+.+++..
T Consensus 42 ~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv-------~~qt~~~~~~ 114 (204)
T d2c78a3 42 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-------MPQTREHILL 114 (204)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-------CHHHHHHHHH
T ss_pred cccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCC-------cHHHHHHHHH
Confidence 588899999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...|+|++|+++||||+.. ....++++++++..++...++.. ...++++.||+.|.+
T Consensus 115 ~~~~gi~~iiv~iNK~D~~~---~~~~~~~~~~~i~~~l~~~~~~~-~~i~~i~~sa~~~~~ 172 (204)
T d2c78a3 115 ARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPG-DEVPVIRGSALLALE 172 (204)
T ss_dssp HHHTTCCCEEEEEECGGGCC---CHHHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHH
T ss_pred HHHcCCCeEEEEEEecccCC---CHHHHHHHHHHHHHHHHhcCCCc-ccceeeeeechhhhh
Confidence 99999988888999999754 34467888889999888888754 367899999986643
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.95 E-value=1.4e-28 Score=177.59 Aligned_cols=148 Identities=58% Similarity=0.967 Sum_probs=105.7
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|....|+++|++++.....+.++++.+.++|||||.+|...+.++...+|++++|||+.+|.++.++....|+.+++..
T Consensus 77 ~d~~~~e~~rg~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l 156 (245)
T d1r5ba3 77 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 156 (245)
T ss_dssp -----------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH
T ss_pred hhccccccccCccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999877777777899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKL-GFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++++++||+|+...++.+.+++++.+++..+++.+ ++.....++|+|+||++|+||.++.+
T Consensus 157 ~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 157 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 999999988999999999888888888899988888877766 34332356899999999999998743
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.95 E-value=1.2e-27 Score=170.28 Aligned_cols=137 Identities=34% Similarity=0.573 Sum_probs=118.8
Q ss_pred cccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 6 LWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 6 ~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
|..++|+++|+|+......+.+.++.++++|||||.+|...+.+++..+|++++|+|+.+|. .+|+.+++..+
T Consensus 65 d~~~~e~~~g~ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~-------~~Qt~e~~~~~ 137 (222)
T d1zunb3 65 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-------QTQTRRHSYIA 137 (222)
T ss_dssp HHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-------CHHHHHHHHHH
T ss_pred ccchhhhccCCCceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCc-------ccchHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...|++++|+++||+|+. ++.+..+.+.++++..+++..++.+. .++|+|+||++|.|+...+.
T Consensus 138 ~~~gv~~iiv~vNK~D~~--~~~~~~~~~~~~~l~~~~~~~~~~~~-~i~~IPiSA~~G~ni~~~s~ 201 (222)
T d1zunb3 138 SLLGIKHIVVAINKMDLN--GFDERVFESIKADYLKFAEGIAFKPT-TMAFVPMSALKGDNVVNKSE 201 (222)
T ss_dssp HHTTCCEEEEEEECTTTT--TSCHHHHHHHHHHHHHHHHTTTCCCS-EEEEEECCTTTCTTTSSCCT
T ss_pred HHcCCCEEEEEEEccccc--cccceehhhhHHHHhhhhHhhccCCC-ceEEEEEEcccCccCCcCcc
Confidence 999999899999999965 45677788888899999998888653 57899999999999987654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=2.3e-27 Score=169.23 Aligned_cols=147 Identities=43% Similarity=0.686 Sum_probs=118.8
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|+......++++++.++|+|||||.+|...+..+++.+|++|+|||+.+|..+..+....++.+++..
T Consensus 56 ~d~~~~e~~rg~ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~ 135 (224)
T d1jnya3 56 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL 135 (224)
T ss_dssp HHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH
T ss_pred ccCchhhhcCCccccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998644444446788999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
+...+++++|+++||+|+....+....++.+.+++..++...++... ..+++|+||.+|.|+...+.
T Consensus 136 ~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~-~i~~IPISA~~G~NV~~~s~ 202 (224)
T d1jnya3 136 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN-KVRFVPVVAPSGDNITHKSE 202 (224)
T ss_dssp HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCT-TCEEEECBTTTTBTTTBCCS
T ss_pred HHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcc-cCeEEEEEccCCCCcccccc
Confidence 99899887899999999987778888888888999999888887653 68999999999999876544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.94 E-value=1.9e-27 Score=166.35 Aligned_cols=131 Identities=31% Similarity=0.458 Sum_probs=116.3
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.|..++|+++|+|++.....+.+.++.++++|||||.+|.+.+.+++..+|++++|||+.+|. ..|+.+++.+
T Consensus 41 ~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~-------~~QT~~~~~~ 113 (196)
T d1d2ea3 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-------MPQTREHLLL 113 (196)
T ss_dssp HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCC-------chhHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
+...+++++|+++||+|+.. +...++.+++++..++...++.+. ..|++++||++|.+
T Consensus 114 a~~~~~~~iIv~iNK~D~~~---~~~~~~~i~~~i~~~l~~~~~~~~-~~pii~iSa~~g~~ 171 (196)
T d1d2ea3 114 ARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGYKGE-ETPIIVGSALCALE 171 (196)
T ss_dssp HHHTTCCCEEEEEECGGGCS---CHHHHHHHHHHHHHHHHHTTSCTT-TSCEEECCHHHHHT
T ss_pred HHHhcCCcEEEEEecccccc---cHHHHHHHHHHHHHHHHHhCCCcc-cCEEEEEEcccccc
Confidence 99989877899999999753 334677788889999988888653 68999999999843
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.88 E-value=1.6e-22 Score=140.82 Aligned_cols=134 Identities=25% Similarity=0.306 Sum_probs=101.2
Q ss_pred ccccHHHhhcCceeeeeeEEEEe-----------------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEE
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFET-----------------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVI 61 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~-----------------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvv 61 (156)
.+..+.|+++|+|.+..+..+.+ ....++++|||||.+|...+..++..+|++++|+
T Consensus 30 ~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvv 109 (195)
T d1kk1a3 30 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 109 (195)
T ss_dssp CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEE
T ss_pred hhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeeccchhhhhhHHhhccccccccccccc
Confidence 35556788899998776554432 1256999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeec
Q psy10355 62 SARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSG 141 (156)
Q Consensus 62 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 141 (156)
|+.++.. .+++.+++..+...++|++|+++||+|+... ....+..+.+..+++..+. .++++||+||
T Consensus 110 da~~g~~------~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~----~~~~~~~~~~~~~~~~~~~---~~~~iIpiSA 176 (195)
T d1kk1a3 110 AANEPCP------RPQTREHLMALQIIGQKNIIIAQNKIELVDK----EKALENYRQIKEFIEGTVA---ENAPIIPISA 176 (195)
T ss_dssp ETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSCH----HHHHHHHHHHHHHHTTSTT---TTCCEEECBT
T ss_pred chhhhhh------hhhhHHHHHHHHHhcCccceeeeecccchhh----HHHHHHHHHHHHHhccccC---CCCeEEEEEC
Confidence 9999862 3567888888888898888999999998642 2222333344455544433 3679999999
Q ss_pred ccCCCCccCC
Q psy10355 142 ELEKNPLLLG 151 (156)
Q Consensus 142 ~~g~gi~~l~ 151 (156)
++|+|+++|.
T Consensus 177 ~~G~ni~~Ll 186 (195)
T d1kk1a3 177 LHGANIDVLV 186 (195)
T ss_dssp TTTBSHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.87 E-value=2.2e-22 Score=138.46 Aligned_cols=133 Identities=24% Similarity=0.392 Sum_probs=94.1
Q ss_pred ccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 5 GLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 5 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.+..+.++.+|+|.......+.+.+..+.++|+||+.+|...+..++..+|++++|+|+.++. ..++.+++..
T Consensus 34 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~-------~~~~~~~~~~ 106 (179)
T d1wb1a4 34 HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP-------KTQTGEHMLI 106 (179)
T ss_dssp ----------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-------CHHHHHHHHH
T ss_pred cccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhcccccccccccccc-------chhhhhhhhh
Confidence 466788999999999999999999999999999999999999999999999999999999987 4778888888
Q ss_pred HHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+...++| +++|+||+|+... .......+....+++... .. .+.++||+||++|+|+++|.
T Consensus 107 ~~~~~~p-~iiv~NKiD~~~~----~~~~~~~~~~~~~~~~~~-~~-~~~~iv~iSA~~g~gi~eL~ 166 (179)
T d1wb1a4 107 LDHFNIP-IIVVITKSDNAGT----EEIKRTEMIMKSILQSTH-NL-KNSSIIPISAKTGFGVDELK 166 (179)
T ss_dssp HHHTTCC-BCEEEECTTSSCH----HHHHHHHHHHHHHHHHSS-SG-GGCCEEECCTTTCTTHHHHH
T ss_pred hhhcCCc-ceeccccccccCH----HHHHHHHHHHHHHHHHhh-cC-CCCeEEEEEccCCcCHHHHH
Confidence 8889999 7999999998743 222222333333343321 11 24689999999999998874
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.5e-22 Score=145.53 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=82.4
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..|+.++|++||+|+......++|++.+++|+|||||.+|...+..+++.+|++|+|||+.+|. ..++...|+
T Consensus 45 ~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv-------~~~T~~~w~ 117 (276)
T d2bv3a2 45 TMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-------EPQSETVWR 117 (276)
T ss_dssp ----------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSS-------CHHHHHHHH
T ss_pred EEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCc-------chhHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
.+...++| .++++||||+..++..
T Consensus 118 ~a~~~~lP-~i~fINKmDr~~ad~~ 141 (276)
T d2bv3a2 118 QAEKYKVP-RIAFANKMDKTGADLW 141 (276)
T ss_dssp HHHTTTCC-EEEEEECTTSTTCCHH
T ss_pred HHHHcCCC-EEEEEecccccccccc
Confidence 99999999 6999999998766543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.86 E-value=6.4e-22 Score=138.85 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=87.2
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
+.++++|||||.+|.+.+..++..+|++|+|+|+.+|.. ..++.+++..+...+++++|+++||+|+....
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~------~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~--- 156 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVVSKE--- 156 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSS------CHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH---
T ss_pred EEEEEeccchHHHHHhhhhcceecccccccccccccccc------chhHHHHHHHHHHcCCceeeeccccCCCccch---
Confidence 579999999999999999999999999999999999852 46788899999989987689999999987432
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 110 ARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+..++..... .++|++|+||++|.||++|.
T Consensus 157 -~~~~~~~~~~~~l~~~~~---~~~p~ipiSA~~g~nI~~L~ 194 (205)
T d2qn6a3 157 -EALSQYRQIKQFTKGTWA---ENVPIIPVSALHKINIDSLI 194 (205)
T ss_dssp -HHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHHHH
T ss_pred -HHHHHHHHHHHHhccccC---CCCeEEEEeCCCCCChHHHH
Confidence 223333444444444433 36799999999999999874
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.86 E-value=4.4e-21 Score=139.24 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=93.5
Q ss_pred CccccHHHhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 4 QGLWLRQKREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 4 ~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
++|+.++|++||+|+......+.|++++++++|||||.+|...+..+++.+|++|+|+|+..|. ..++...+.
T Consensus 41 ~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv-------~~~t~~~~~ 113 (267)
T d2dy1a2 41 TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-------QVGTERAWT 113 (267)
T ss_dssp SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHH
T ss_pred cccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCc-------cchhHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHH
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKI 119 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 119 (156)
.+...++| .++++||+|.. .++ ...+.++++.+
T Consensus 114 ~~~~~~~p-~~i~iNk~D~~-~~~-~~~l~~~~~~l 146 (267)
T d2dy1a2 114 VAERLGLP-RMVVVTKLDKG-GDY-YALLEDLRSTL 146 (267)
T ss_dssp HHHHTTCC-EEEEEECGGGC-CCH-HHHHHHHHHHH
T ss_pred hhhhcccc-ccccccccccc-ccc-hhhhhhHHHHh
Confidence 99999999 68899999973 332 33345444443
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=6.9e-21 Score=142.39 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=75.6
Q ss_pred cCccccHHHhhcCceeeeeeEEEEe----------------CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCC
Q psy10355 3 GQGLWLRQKREKGKTVEVGRAYFET----------------DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKG 66 (156)
Q Consensus 3 ~~~~~~~~e~~~g~t~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~ 66 (156)
+++|..++|++||+|+..+...+.+ +++.++++|||||.+|...+..+++.+|++++|||+.+|
T Consensus 53 ~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eG 132 (341)
T d1n0ua2 53 RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 132 (341)
T ss_dssp ------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred cccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccC
Confidence 4578899999999999999988855 356799999999999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCc
Q psy10355 67 EFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~ 105 (156)
. ..++..+++++...++| +++++||+|+...
T Consensus 133 v-------~~qT~~~~~~a~~~~~p-~i~viNKiDr~~~ 163 (341)
T d1n0ua2 133 V-------CVQTETVLRQALGERIK-PVVVINKVDRALL 163 (341)
T ss_dssp S-------CHHHHHHHHHHHHTTCE-EEEEEECHHHHHH
T ss_pred c-------chhHHHHHHHHHHcCCC-eEEEEECcccccc
Confidence 8 58999999999999999 7999999997533
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=1.8e-20 Score=133.28 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=67.3
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 24 YFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 24 ~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
.+.+++.+++++|||||.+|...+..++..+|++|+|+|+.+|. ..++.+++..+...++| +|+++||+|+.
T Consensus 64 ~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~iivlNK~D~~ 135 (227)
T d1g7sa4 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYRTP-FVVAANKIDRI 135 (227)
T ss_dssp GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-------CHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred eecccccccccccccceecccccchhcccccceEEEEEecccCc-------ccchhHHHHHhhcCCCe-EEEEEECccCC
Confidence 34567789999999999999999999999999999999999988 58899999999999999 89999999986
Q ss_pred Ccc
Q psy10355 104 TVM 106 (156)
Q Consensus 104 ~~~ 106 (156)
...
T Consensus 136 ~~~ 138 (227)
T d1g7sa4 136 HGW 138 (227)
T ss_dssp TTC
T ss_pred Cch
Confidence 543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.4e-17 Score=112.89 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=79.3
Q ss_pred hhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+..+.+.....+...+ ..+.+|||||++++...+..+++.+|++|+|+|+++.. ++.....+...........
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~ 110 (169)
T d3raba_ 34 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWSTQIKTYSWDN 110 (169)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCSC
T ss_pred cccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccch---hhhhhhhhhhhhhcccCCc
Confidence 344444444444454443 67999999999999999999999999999999998743 1211122222222222233
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.| +++++||.|+....... .+ +...+.+.. +++++++||++|+|++++
T Consensus 111 ~~-iivv~nK~D~~~~~~v~--~~----~~~~~~~~~------~~~~~e~Sak~g~gv~e~ 158 (169)
T d3raba_ 111 AQ-VLLVGNKCDMEDERVVS--SE----RGRQLADHL------GFEFFEASAKDNINVKQT 158 (169)
T ss_dssp CE-EEEEEECTTCGGGCCSC--HH----HHHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred ce-EEEEEeecccccccccc--hh----hhHHHHHHc------CCEEEEecCCCCcCHHHH
Confidence 45 78899999975332111 11 233344444 358999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-17 Score=113.54 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=83.8
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+..++++.+.....+..++ ..+.+|||||+++|...+..++++++++++|+|.++.. ++.....+...+....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~ 107 (171)
T d2ew1a1 31 PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREIEQYA 107 (171)
T ss_dssp CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHS
T ss_pred CCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccch---hhhhhhhhhhhhcccc
Confidence 445566677776766776655 55889999999999999999999999999999997743 2221122222222222
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+.| +++++||+|+....... . ++...+.+.. ++++++|||++|+||+++
T Consensus 108 ~~~~~-~ilvgnK~D~~~~~~v~--~----~~~~~~~~~~------~~~~~~~SAktg~gV~e~ 158 (171)
T d2ew1a1 108 SNKVI-TVLVGNKIDLAERREVS--Q----QRAEEFSEAQ------DMYYLETSAKESDNVEKL 158 (171)
T ss_dssp CTTCE-EEEEEECGGGGGGCSSC--H----HHHHHHHHHH------TCCEEECCTTTCTTHHHH
T ss_pred ccccc-EEEEEeecccccccchh--h----hHHHHHHHhC------CCEEEEEccCCCCCHHHH
Confidence 23456 89999999975321111 1 1233334444 358999999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.7e-17 Score=109.43 Aligned_cols=126 Identities=15% Similarity=0.099 Sum_probs=85.0
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
..+..++.+.+.....+..++ ..+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~ 106 (166)
T d1z0fa1 30 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLT 106 (166)
T ss_dssp CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHS
T ss_pred CCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchH---HHHHHHHHHHHHHhhc
Confidence 344555666666666666665 47999999999999999999999999999999998742 2322223333332222
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....| +++++||+|+....... .++...+.+.. +++++++||++|+|++++
T Consensus 107 ~~~~~-iilvgnK~Dl~~~~~~~------~~~~~~~~~~~------~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 107 NPNTV-IILIGNKADLEAQRDVT------YEEAKQFAEEN------GLLFLEASAKTGENVEDA 157 (166)
T ss_dssp CTTCE-EEEEEECTTCGGGCCSC------HHHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred cccce-EEEEcccccchhhcccH------HHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 23455 89999999974322111 12233344444 468999999999999875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.5e-17 Score=110.24 Aligned_cols=111 Identities=20% Similarity=0.106 Sum_probs=66.4
Q ss_pred EEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCC
Q psy10355 24 YFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKM 100 (156)
Q Consensus 24 ~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~ 100 (156)
.+..++ ..+.+|||||++++...+..+++.+|++|+|+|.++.. +|.....+...+.... ..++| +++|+||+
T Consensus 40 ~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~---s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~ 115 (168)
T d2gjsa1 40 SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---SFEKASELRVQLRRARQTDDVP-IILVGNKS 115 (168)
T ss_dssp EEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHH---HHHHHHHHHHHHHHHCC--CCC-EEEEEECT
T ss_pred eeeccccccceeeeecccccccceecccchhhhhhhceeccccccc---cccccccccchhhcccccccce-EEEeeccc
Confidence 344444 67899999999999999999999999999999998742 2222222222222211 23467 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+....... . .+...+.+.. +++++++||++|.|++++
T Consensus 116 Dl~~~~~v~--~----~~~~~~~~~~------~~~~~e~Sak~~~~v~~~ 153 (168)
T d2gjsa1 116 DLVRSREVS--V----DEGRACAVVF------DCKFIETSAALHHNVQAL 153 (168)
T ss_dssp TCGGGCCSC--H----HHHHHHHHHH------TSEEEECBTTTTBSHHHH
T ss_pred chhhhcchh--H----HHHHHHHHhc------CCEEEEEeCCCCcCHHHH
Confidence 985321111 1 1123333443 468999999999999865
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=1.4e-16 Score=108.66 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=83.8
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS--------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
....++|...........+..+.++||||+.. +...+..++++||++++|+|++.+. ......+.
T Consensus 34 ~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-------~~~~~~i~ 106 (178)
T d1wf3a1 34 SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP-------TPEDELVA 106 (178)
T ss_dssp CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC-------CHHHHHHH
T ss_pred cccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhh-------cccccchh
Confidence 34578888888888899999999999999854 2445667788999999999998865 23344444
Q ss_pred HHHHH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 83 MLAKT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 83 ~~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
..+.. .+.| +++|+||+|+... . ++..+.+. +..+ ...++++||++|+|+++|.
T Consensus 107 ~~l~~~~~~~p-iilv~NK~Dl~~~--~----~~~~~~~~---~~~~-----~~~~~~iSA~~~~gi~~L~ 162 (178)
T d1wf3a1 107 RALKPLVGKVP-ILLVGNKLDAAKY--P----EEAMKAYH---ELLP-----EAEPRMLSALDERQVAELK 162 (178)
T ss_dssp HHHGGGTTTSC-EEEEEECGGGCSS--H----HHHHHHHH---HTST-----TSEEEECCTTCHHHHHHHH
T ss_pred hheeccccchh-hhhhhcccccccC--H----HHHHHHHH---hhcc-----cCceEEEecCCCCCHHHHH
Confidence 44443 2567 8999999998532 1 11122222 2222 3578999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-16 Score=105.96 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=87.8
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..++++..........++ ..+.+||+||++++...+..+++.+|++++|+|.++.. +|.....+...+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~i~~~~~~~~~~ 101 (164)
T d1yzqa1 25 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVN---SFQQTTKWIDDVRTE 101 (164)
T ss_dssp CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHH
T ss_pred CCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeecccccc---chhhhHhhHHHHHHh
Confidence 3455566666666666666554 57899999999999999999999999999999998743 333223333333333
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+.| +++|+||+|+....... . ++...+.+.. +++++++||++|+||+++.
T Consensus 102 ~~~~~~-iilvgnK~Dl~~~~~~~--~----~~~~~~~~~~------~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 102 RGSDVI-IMLVGNKTDLADKRQVS--I----EEGERKAKEL------NVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp HTTSSE-EEEEEECTTCGGGCCSC--H----HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred cCCCce-EEEEecccchhhhhhhh--H----HHHHHHHHHc------CCEEEEecCCCCcCHHHHH
Confidence 334566 89999999975322111 1 2233344444 4689999999999998753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.6e-16 Score=108.09 Aligned_cols=127 Identities=17% Similarity=0.092 Sum_probs=83.8
Q ss_pred cHHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 8 LRQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 8 ~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
+..+..++.+.......+..++ ..+.+|||||+++|...+...++.+|++|+|+|.++.. +|.....+...+...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~---S~~~~~~~~~~i~~~ 105 (175)
T d2f9la1 29 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHL---TYENVERWLKELRDH 105 (175)
T ss_dssp CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHH
T ss_pred CCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcc---cchhHHHHHHHHHHh
Confidence 3445566666666666676666 57889999999999999999999999999999998742 333223333333322
Q ss_pred HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 86 KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 86 ~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...++| +++|+||+|+........ .. .....+.. +.+++++||++|+|++++
T Consensus 106 ~~~~~p-iilvgnK~Dl~~~~~~~~--~~----~~~~~~~~------~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 106 ADSNIV-IMLVGNKSDLRHLRAVPT--DE----ARAFAEKN------NLSFIETSALDSTNVEEA 157 (175)
T ss_dssp SCTTCE-EEEEEECTTCGGGCCSCH--HH----HHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred cCCCCc-EEEEEeeecccccccchH--HH----HHHhhccc------CceEEEEecCCCcCHHHH
Confidence 234567 899999999853221111 11 11222222 469999999999999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.1e-16 Score=109.01 Aligned_cols=113 Identities=11% Similarity=0.156 Sum_probs=73.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc-hHHHHHHHHHcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ-TREHAMLAKTAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~ 106 (156)
....+.+||+||++.+...+..+++++|++|+|+|.++.. +|+.... +...+. ....++| +++++||+|+....
T Consensus 48 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---Sf~~~~~~~~~~~~-~~~~~~p-iilvgnK~Dl~~~~ 122 (177)
T d1kmqa_ 48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIPEKWTPEVK-HFCPNVP-IILVGNKKDLRNDE 122 (177)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHH-HHSTTSC-EEEEEECGGGTTCH
T ss_pred cceeeeccccCccchhcccchhhcccchhhhhhcccchhH---HHHHHHHHHHHHHH-HhCCCCc-eEEeeecccccchh
Confidence 3356999999999999999999999999999999998732 2221111 122222 1224678 89999999986432
Q ss_pred hhHHHHHHH------HHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 107 WSEARYNEC------KDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 107 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
......... .++...+.+..+ ..++++|||++|.||+++
T Consensus 123 ~~~~~~~~~~~~~v~~~e~~~~a~~~~-----~~~~~E~SAkt~~gi~e~ 167 (177)
T d1kmqa_ 123 HTRRELAKMKQEPVKPEEGRDMANRIG-----AFGYMECSAKTKDGVREV 167 (177)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHH
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHcC-----CcEEEEecCCCCcCHHHH
Confidence 211111000 112334444443 368999999999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.63 E-value=1.3e-16 Score=107.37 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=82.1
Q ss_pred cCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcC
Q psy10355 14 KGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAG 89 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 89 (156)
.+.|.+.....+..++..+.+|||||++.+...+..+++.++++++|+|+++... + ......+... ...+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~---~---~~~~~~~~~~~~~~~~~~ 103 (165)
T d1ksha_ 30 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAG 103 (165)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTT
T ss_pred ccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchh---H---HHHHHhhhhhhhhcccCC
Confidence 4566777777888999999999999999998889999999999999999977431 1 1112222222 2245
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.| +++++||+|+...... .+..+.+ ...... ...++++++||++|+|++++
T Consensus 104 ~p-~iiv~nK~Dl~~~~~~----~~~~~~~----~~~~~~-~~~~~~~~~Sa~~g~gv~e~ 154 (165)
T d1ksha_ 104 AT-LLIFANKQDLPGALSC----NAIQEAL----ELDSIR-SHHWRIQGCSAVTGEDLLPG 154 (165)
T ss_dssp CE-EEEEEECTTSTTCCCH----HHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred Cc-eEEEEeccccccccCH----HHHHHHH----Hhhhhh-cCCCEEEEEECCCCCCHHHH
Confidence 67 8999999998643221 1111111 111111 13578999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-16 Score=106.69 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=81.4
Q ss_pred hhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcC
Q psy10355 12 REKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAG 89 (156)
Q Consensus 12 ~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
..+.+..+.....+.. ....+.+|||||+..+...+..+++++|++++|+|+++. .+|+....+...+... ..+
T Consensus 32 ~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~Sf~~~~~~~~~~~~~-~~~ 107 (170)
T d1i2ma_ 32 YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR---VTYKNVPNWHRDLVRV-CEN 107 (170)
T ss_dssp EEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSG---GGGTTHHHHHHHHHHH-HCS
T ss_pred cccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccc---cccchhHHHHHHHhhc-cCC
Confidence 3344444444444444 346899999999999988899999999999999999883 4454444444333222 346
Q ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 90 VKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 90 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+| +++|+||+|+........ .....+. .+++++++||++|.|++++
T Consensus 108 ~p-iilvgnK~Dl~~~~~~~~--------~~~~~~~------~~~~~~e~Sak~~~~v~e~ 153 (170)
T d1i2ma_ 108 IP-IVLCGNKVDIKDRKVKAK--------SIVFHRK------KNLQYYDISAKSNYNFEKP 153 (170)
T ss_dssp CC-EEEEEECCCCSCSCCTTT--------SHHHHSS------CSSEEEEEBTTTTBTTTHH
T ss_pred Cc-eeeecchhhhhhhhhhhH--------HHHHHHH------cCCEEEEEeCCCCCCHHHH
Confidence 78 899999999864322211 1111221 3579999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.1e-16 Score=105.52 Aligned_cols=122 Identities=17% Similarity=0.129 Sum_probs=71.9
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
...+..+.....+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. ++.....+............
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 113 (170)
T d2g6ba1 37 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA---SFDNIQAWLTEIHEYAQHDV 113 (170)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCTTC
T ss_pred cceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCccc---chhhhhhhhhhhhhccCCCc
Confidence 33444455555555555 47899999999999999999999999999999997743 22211222222222222345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| ++++.||+|+....... .+ +...+.+.. +++++++||++|.||+++
T Consensus 114 ~-iilv~~k~d~~~~~~v~--~~----~~~~~~~~~------~~~~~e~Sak~g~gi~e~ 160 (170)
T d2g6ba1 114 A-LMLLGNKVDSAHERVVK--RE----DGEKLAKEY------GLPFMETSAKTGLNVDLA 160 (170)
T ss_dssp E-EEEEEECCSTTSCCCSC--HH----HHHHHHHHH------TCCEEECCTTTCTTHHHH
T ss_pred e-EEEEEeeechhhccccc--HH----HHHHHHHHc------CCEEEEEeCCCCcCHHHH
Confidence 5 88999999976432211 11 233333444 468999999999999875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.5e-16 Score=110.01 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=78.3
Q ss_pred HhhcCceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..++++.......+.. ....+.+|||||+++|...+..+++.++++|+|+|+++.. +|.....+...+......
T Consensus 34 ~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~---s~~~~~~~~~~~~~~~~~ 110 (194)
T d2bcgy1 34 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE---SFNGVKMWLQEIDRYATS 110 (194)
T ss_dssp TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCT
T ss_pred CcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchh---hhhhHhhhhhhhhhcccC
Confidence 33344444334444444 4467999999999999988999999999999999998643 111111111222222223
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++++||+|+........ +......+.. +.+++++||++|.||+++
T Consensus 111 ~~~-iilv~nK~D~~~~~~~~~------~~~~~~~~~~------~~~~~e~SAk~g~gi~e~ 159 (194)
T d2bcgy1 111 TVL-KLLVGNKCDLKDKRVVEY------DVAKEFADAN------KMPFLETSALDSTNVEDA 159 (194)
T ss_dssp TCE-EEEEEECTTCTTTCCSCH------HHHHHHHHHT------TCCEEECCTTTCTTHHHH
T ss_pred Cce-EEEEEeccccccccchhH------HHHhhhhhcc------CcceEEEecCcCccHHHH
Confidence 456 899999999864322211 1122223333 468999999999999875
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=2.4e-15 Score=101.70 Aligned_cols=119 Identities=23% Similarity=0.283 Sum_probs=81.8
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
+...|.|.......+......+.++||||... +...+..++..+|++++++|++.+. ......+
T Consensus 29 ~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~-------~~~~~~~ 101 (171)
T d1mkya1 29 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI-------TKEDESL 101 (171)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC-------CHHHHHH
T ss_pred cccCceeeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccc-------ccccccc
Confidence 45678888888999999999999999999632 2445666778999999999998776 3555666
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+..+...++| +|+|+||+|+.. . ...++...+...++ .+++++||++|.|+++|.
T Consensus 102 ~~~l~~~~~p-viiv~NK~Dl~~----~-----~~~~~~~~~~~~~~-----~~~i~iSAk~g~gid~L~ 156 (171)
T d1mkya1 102 ADFLRKSTVD-TILVANKAENLR----E-----FEREVKPELYSLGF-----GEPIPVSAEHNINLDTML 156 (171)
T ss_dssp HHHHHHHTCC-EEEEEESCCSHH----H-----HHHHTHHHHGGGSS-----CSCEECBTTTTBSHHHHH
T ss_pred cccccccccc-ccccchhhhhhh----h-----hhhHHHHHHHhcCC-----CCeEEEecCCCCCHHHHH
Confidence 6777788999 899999999751 1 11122222222332 467999999999998875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.3e-16 Score=104.03 Aligned_cols=124 Identities=16% Similarity=0.093 Sum_probs=78.9
Q ss_pred HhhcCceeeeeeEEEEeC--CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETD--RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+..........+..+ ...+.+|||||++++...+..+++.+|++++|+|.++.. +|.....+...+......
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~ 109 (174)
T d2bmea1 33 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYNALTNWLTDARMLASQ 109 (174)
T ss_dssp TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHSCT
T ss_pred ccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccch---hHHHHhhhhcccccccCC
Confidence 333334444444444433 356999999999999999999999999999999998743 222112222222222223
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++++||+|+........ +....+.+.. +++++++||++|+|++++
T Consensus 110 ~~p-iivv~nK~D~~~~~~~~~------~~~~~~~~~~------~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 110 NIV-IILCGNKKDLDADREVTF------LEASRFAQEN------ELMFLETSALTGENVEEA 158 (174)
T ss_dssp TCE-EEEEEECGGGGGGCCSCH------HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred ceE-EEEEEecccccchhchhh------hHHHHHHHhC------CCEEEEeeCCCCcCHHHH
Confidence 567 899999999743221111 1122233333 469999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.8e-15 Score=103.47 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=85.7
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcC------------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKS------------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTRE 80 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~------------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~ 80 (156)
..+.|.......+.+++..+.++|+||+.. ....+..+++.+|++++|+|+..+. ..+...
T Consensus 39 ~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~-------~~~~~~ 111 (186)
T d1mkya2 39 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI-------TRQDQR 111 (186)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC-------CHHHHH
T ss_pred ccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccc-------hhhHHH
Confidence 456777777788899999999999999743 2456777789999999999998876 356666
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 81 HAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 81 ~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
++..+...+.| +|+++||+|+.... .....++.+.+...+... ...+++++||++|.|+++|.
T Consensus 112 ~~~~~~~~~~~-~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~i~~vSa~~g~gv~~L~ 174 (186)
T d1mkya2 112 MAGLMERRGRA-SVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI-----DYSPLIFTSADKGWNIDRMI 174 (186)
T ss_dssp HHHHHHHTTCE-EEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG-----TTSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHcCCc-eeeeccchhhhcch--hhhhhhHHHHHHHHhccc-----CCCeEEEEeCCCCCCHHHHH
Confidence 77777788888 79999999975332 222344444343332222 24689999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.61 E-value=8.5e-16 Score=104.21 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=76.3
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH----HHcCCCcEEEE
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA----KTAGVKHLVVL 96 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ivv 96 (156)
....+...+..+.+||+||++++...+..+++.+|++++|+|+++.. ++ ......+... ...++| ++++
T Consensus 51 ~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~---s~---~~~~~~~~~~~~~~~~~~~p-illv 123 (176)
T d1fzqa_ 51 NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK---RF---EETGQELTELLEEEKLSCVP-VLIF 123 (176)
T ss_dssp EEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHTTCGGGTTCC-EEEE
T ss_pred eEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeecccccc---ch---hhhhhhhhhhhhhhccCCCe-EEEE
Confidence 34456678899999999999999999999999999999999998743 11 1111122111 223567 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+||+|+...... ..+.+.+ ..... ....++++++||++|+|++++
T Consensus 124 ~nK~Dl~~~~~~----~~~~~~~----~~~~~-~~~~~~~~~~SA~tg~gv~e~ 168 (176)
T d1fzqa_ 124 ANKQDLLTAAPA----SEIAEGL----NLHTI-RDRVWQIQSCSALTGEGVQDG 168 (176)
T ss_dssp EECTTSTTCCCH----HHHHHHT----TGGGC-CSSCEEEEECCTTTCTTHHHH
T ss_pred EEeccccccccH----HHHHHHH----HHHHH-HhcCCEEEEEeCCCCCCHHHH
Confidence 999998643221 1112111 11111 113568999999999999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.60 E-value=7.7e-16 Score=103.55 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=80.0
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
|.+.....+..++..+.+||+||++.+...+..++..++++++|+|+++.. +| ......+..+. ..++|
T Consensus 34 T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p- 106 (164)
T d1zd9a1 34 TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE---KI---EASKNELHNLLDKPQLQGIP- 106 (164)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG---GH---HHHHHHHHHHHTCGGGTTCC-
T ss_pred cceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccccccc---cc---chhhhhhhhhhhhhcccCCc-
Confidence 556666778889999999999999999999999999999999999997642 11 11112222221 23677
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+...... .++.+.+ ....+. ...++++++||++|+|++++
T Consensus 107 i~lv~nK~Dl~~~~~~----~~i~~~~----~~~~~~-~~~~~~~e~Sa~~g~gv~e~ 155 (164)
T d1zd9a1 107 VLVLGNKRDLPGALDE----KELIEKM----NLSAIQ-DREICCYSISCKEKDNIDIT 155 (164)
T ss_dssp EEEEEECTTSTTCCCH----HHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred EEEEEeccccchhhhH----HHHHHHH----HHHHHH-hCCCEEEEEeCcCCcCHHHH
Confidence 8999999998643221 1111111 111111 13578999999999999763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.5e-16 Score=106.36 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC-cchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG-GQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||++.+...+..+++++|++++|+|+++.. +|+.. ..+...++ ....+.| +++|+||+|+......
T Consensus 57 ~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~---Sf~~~~~~~~~~~~-~~~~~~~-~ilvgnK~Dl~~~~~~ 131 (185)
T d2atxa1 57 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQNVKEEWVPELK-EYAPNVP-FLLIGTQIDLRDDPKT 131 (185)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHH-HHSTTCC-EEEEEECTTSTTCHHH
T ss_pred EEeecccccccchhhhhhhhcccccceeeeccccchHH---HHHHHHHHHHHHHH-hcCCCCC-eeEeeeccccccchhh
Confidence 56899999999999999999999999999999998732 33211 12222222 2234677 8999999998642111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...... ..++...+.+.++ ..++++|||++|.||+++
T Consensus 132 ~~~~~~~~~r~v~~~~~~~~a~~~~-----~~~~~E~SAk~~~gv~e~ 174 (185)
T d2atxa1 132 LARLNDMKEKPICVEQGQKLAKEIG-----ACCYVECSALTQKGLKTV 174 (185)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHT-----CSCEEECCTTTCTTHHHH
T ss_pred hhhhhhcccccccHHHHHHHHHHcC-----CCEEEEecCCCCcCHHHH
Confidence 100000 0122333444443 368999999999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.1e-15 Score=102.78 Aligned_cols=123 Identities=19% Similarity=0.173 Sum_probs=81.6
Q ss_pred HhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHc
Q psy10355 11 KREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTA 88 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+..+.+..+.....+..++ ..+.+|||||++++......+++.+|++++|+|.++.. +|+....+...+.. ...
T Consensus 30 ~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~-~~~ 105 (164)
T d1z2aa1 30 DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFEAISSWREKVVA-EVG 105 (164)
T ss_dssp CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHH-HHC
T ss_pred ccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchh---hhhhcccccccccc-cCC
Confidence 3344454455555555554 56899999999999888889999999999999998743 33322333333221 124
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++| +++|+||+|+...... ..+ +...+.+.. +++++++||++|.|++++
T Consensus 106 ~~~-iilVgnK~Dl~~~~~v--~~~----~~~~~~~~~------~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 106 DIP-TALVQNKIDLLDDSCI--KNE----EAEGLAKRL------KLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp SCC-EEEEEECGGGGGGCSS--CHH----HHHHHHHHH------TCEEEECBTTTTBSSHHH
T ss_pred Cce-EEEeeccCCcccceee--eeh----hhHHHHHHc------CCEEEEeccCCCcCHHHH
Confidence 677 8999999997532111 111 233344444 468999999999999875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=4.5e-16 Score=105.64 Aligned_cols=126 Identities=17% Similarity=0.056 Sum_probs=68.5
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+..++++.+.....+..++ ..+.+|||||++.+...+..+++++|++|+|+|+++.. +|.....+...+....
T Consensus 32 ~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~ 108 (173)
T d2fu5c1 32 NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SFDNIRNWIRNIEEHA 108 (173)
T ss_dssp --CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHS
T ss_pred CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChh---hHHHHHHHHHHhhhhc
Confidence 344455555566666666655 56888999999999999999999999999999998743 2221222222222222
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+.| +++++||.|+........ .+ ........ +++++++||++|+|++++
T Consensus 109 ~~~~~-iilv~~k~D~~~~~~~~~--~~----~~~~~~~~------~~~~~e~Sa~~g~gv~e~ 159 (173)
T d2fu5c1 109 SADVE-KMILGNKCDVNDKRQVSK--ER----GEKLALDY------GIKFMETSAKANINVENA 159 (173)
T ss_dssp CTTCE-EEEEEEC--CCSCCCSCH--HH----HHHHHHHH------TCEEEECCC---CCHHHH
T ss_pred cCCce-EEEEEecccchhhcccHH--HH----HHHHHHhc------CCEEEEEeCCCCCCHHHH
Confidence 34456 899999999764322211 11 22223333 468999999999999864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.60 E-value=1.6e-15 Score=102.75 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=78.9
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCC
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 91 (156)
.|..............+.+||+||+..+...+..+++.++++++|+|+++... + ......+.... ..+.|
T Consensus 42 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p 115 (173)
T d1e0sa_ 42 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---I---DEARQELHRIINDREMRDAI 115 (173)
T ss_dssp EETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTSGGGTTCE
T ss_pred ceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchh---H---HHHHHHHHHHhhhcccccce
Confidence 44555556667788999999999999999999999999999999999976421 0 11222222221 13456
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+...... .++.+++ ....+. ..+++++++||++|+||+++
T Consensus 116 -iiiv~NK~Dl~~~~~~----~~i~~~~----~~~~~~-~~~~~~~e~SA~tg~gv~e~ 164 (173)
T d1e0sa_ 116 -ILIFANKQDLPDAMKP----HEIQEKL----GLTRIR-DRNWYVQPSCATSGDGLYEG 164 (173)
T ss_dssp -EEEEEECTTSTTCCCH----HHHHHHT----TGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred -eeeeeecccccccccH----HHHHHHH----HHHHHH-hCCCEEEEeeCCCCcCHHHH
Confidence 8999999998642211 2222221 111111 13568999999999999763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6e-16 Score=104.39 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=76.9
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
++..+.............++ ..+.+||++|+.++...+..+++++|++++|+|.++.. +|.....+...+.....
T Consensus 30 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---Sf~~~~~~~~~~~~~~~ 106 (167)
T d1z08a1 30 DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED---SFQKVKNWVKELRKMLG 106 (167)
T ss_dssp SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHG
T ss_pred cccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchh---HHHhhhhhhhhcccccc
Confidence 34444455455555555544 67999999999999999999999999999999998742 33222333333333333
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...| +++++||+|+...... .. ++...+.+.. +++++++||++|.||+++
T Consensus 107 ~~~~-~ilvgnK~Dl~~~~~v--~~----~e~~~~a~~~------~~~~~e~Sak~~~~v~e~ 156 (167)
T d1z08a1 107 NEIC-LCIVGNKIDLEKERHV--SI----QEAESYAESV------GAKHYHTSAKQNKGIEEL 156 (167)
T ss_dssp GGSE-EEEEEECGGGGGGCCS--CH----HHHHHHHHHT------TCEEEEEBTTTTBSHHHH
T ss_pred cccc-eeeecccccccccccc--ch----HHHHHHHHHc------CCeEEEEecCCCcCHHHH
Confidence 4556 7889999997532111 11 2234444554 468999999999999875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2e-15 Score=102.07 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=74.5
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH--HcCCCcEEEEEeCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK--TAGVKHLVVLINKM 100 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~NK~ 100 (156)
...++ ..+.+||++|.+.+...+..+++.+|++++|+|+++. .+|.....+...+.... ..++| +++|+||+
T Consensus 43 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~ 118 (171)
T d2erxa1 43 ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR---QSLEELKPIYEQICEIKGDVESIP-IMLVGNKC 118 (171)
T ss_dssp EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH---HHHHTTHHHHHHHHHHHC---CCC-EEEEEECG
T ss_pred eeeccccceeccccccccccccccccccccceeEEEEEeecccc---cchhcccchhhhhhhhhccCCCCc-EEEEeecc
Confidence 34444 4688899999999999999999999999999999873 33333333433333222 24567 89999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 101 DDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 101 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+...... .. ++...+.+.. +++++++||++|+||+++
T Consensus 119 Dl~~~~~v--~~----~e~~~~~~~~------~~~~~e~Sak~~~~v~e~ 156 (171)
T d2erxa1 119 DESPSREV--QS----SEAEALARTW------KCAFMETSAKLNHNVKEL 156 (171)
T ss_dssp GGGGGCCS--CH----HHHHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred cccccccc--cH----HHHHHHHHHc------CCeEEEEcCCCCcCHHHH
Confidence 97422111 11 1233344444 468999999999999875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.58 E-value=2.3e-15 Score=102.70 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=75.4
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCC
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 91 (156)
.|...........+..+.+||+||++.+...+..+++.+|++++|+|+++... + ......+.... ..+.|
T Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s---~---~~~~~~l~~~~~~~~~~~~p 120 (182)
T d1moza_ 47 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA 120 (182)
T ss_dssp SSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE
T ss_pred cccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeeccccc---c---hhHHHHHHHHHHhhccCCcc
Confidence 35555667778889999999999999999999999999999999999987531 0 11222222211 12456
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||+|+...... .++.+.+ ..... ....+++++|||++|+|++++
T Consensus 121 -iliv~NK~Dl~~~~~~----~~i~~~~----~~~~~-~~~~~~~~e~SA~~g~gv~e~ 169 (182)
T d1moza_ 121 -LLVFANKQDQPGALSA----SEVSKEL----NLVEL-KDRSWSIVASSAIKGEGITEG 169 (182)
T ss_dssp -EEEEEECTTSTTCCCH----HHHHHHT----TTTTC-CSSCEEEEEEBGGGTBTHHHH
T ss_pred -eEEEEEeeccccccCH----HHHHHHH----HHHHH-hhCCCEEEEEECCCCCCHHHH
Confidence 8999999998642211 1222111 11111 113578999999999999764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.8e-15 Score=102.61 Aligned_cols=126 Identities=20% Similarity=0.157 Sum_probs=81.0
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+..++.+...........+ ..+.+||++|++.+...+..+++.+|++++|+|.++.. +|+....+...+....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~~~~~~~~~~~~~~ 105 (173)
T d2a5ja1 29 QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLTSWLEDARQHS 105 (173)
T ss_dssp CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHS
T ss_pred CCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChH---HHHhHHHHHHHHHHhC
Confidence 444555565555555555544 57899999999999999999999999999999998732 3332233333232222
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..++| +++|+||+|+....... .++...+.+.. +++++++||++|.||+++
T Consensus 106 ~~~~p-iilv~nK~D~~~~~~~~------~~~~~~~a~~~------~~~~~e~Sa~tg~~V~e~ 156 (173)
T d2a5ja1 106 SSNMV-IMLIGNKSDLESRRDVK------REEGEAFAREH------GLIFMETSAKTACNVEEA 156 (173)
T ss_dssp CTTCE-EEEEEECTTCGGGCCSC------HHHHHHHHHHH------TCEEEEECTTTCTTHHHH
T ss_pred CCCCe-EEEEecCCchhhhhhhH------HHHHHHHHHHc------CCEEEEecCCCCCCHHHH
Confidence 24567 89999999974321111 11233333433 468999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.1e-15 Score=102.85 Aligned_cols=125 Identities=15% Similarity=0.087 Sum_probs=78.2
Q ss_pred HHHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH
Q psy10355 9 RQKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK 86 (156)
Q Consensus 9 ~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+..++++.+.....+..++ ..+.+|||||++++...+..+++++|++++|+|.++.. +++....+........
T Consensus 28 ~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~ 104 (166)
T d1g16a_ 28 NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER---TFTNIKQWFKTVNEHA 104 (166)
T ss_dssp CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHH---HHHTHHHHHHHHHHHS
T ss_pred CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCcc---CHHHHHhhhhhhhccc
Confidence 344556666666666666555 56778999999999888889999999999999998743 2221111112222222
Q ss_pred HcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
....| ++++.||.|+........ +...+.+.. +++++++||++|+|++++
T Consensus 105 ~~~~~-~i~~~~k~d~~~~~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~e~ 154 (166)
T d1g16a_ 105 NDEAQ-LLLVGNKSDMETRVVTAD-------QGEALAKEL------GIPFIESSAKNDDNVNEI 154 (166)
T ss_dssp CTTCE-EEEEEECTTCTTCCSCHH-------HHHHHHHHH------TCCEEECBTTTTBSHHHH
T ss_pred cCcce-eeeecchhhhhhhhhhHH-------HHHHHHHhc------CCeEEEECCCCCCCHHHH
Confidence 22345 788999999764433332 223333443 468999999999999875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.3e-15 Score=101.74 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+..........+.... ..+.+|||||++++...+..+++++|++++|+|.++.. +|.....+...+.....
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~ 109 (170)
T d1r2qa_ 33 EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---SFARAKNWVKELQRQAS 109 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhh---HHHHHHHHhhhhhhccC
Confidence 34444455555545555544 56999999999999999999999999999999987743 11111111122111122
Q ss_pred cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++++||+|+...... ..+ ....+.+.. +++++++||++|+||+++
T Consensus 110 ~~~~-iilvgnK~Dl~~~~~v--~~e----~~~~~~~~~------~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 110 PNIV-IALSGNKADLANKRAV--DFQ----EAQSYADDN------SLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp TTCE-EEEEEECGGGGGGCCS--CHH----HHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred CCce-EEeecccccccccccc--cHH----HHHHHHHhc------CCEEEEeeCCCCCCHHHH
Confidence 3566 8999999997532111 111 122333333 469999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.8e-15 Score=98.21 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=75.1
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+||++|+..+...+..+++.++++++|+|.++. .+|+....+...+..... .++| +++|+||+|+.....
T Consensus 50 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (166)
T d1ctqa_ 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT---KSFEDIHQYREQIKRVKDSDDVP-MVLVGNKCDLAARTV 125 (166)
T ss_dssp EEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCH---HHHHTHHHHHHHHHHHHTCSSCC-EEEEEECTTCSCCCS
T ss_pred eeeeeeeeccCccccccchhhhhhcccccceeeccccc---ccHHHHHHHHHHHHHhcCCCCCe-EEEEecccccccccc
Confidence 35699999999999999999999999999999999873 333333333333333322 3577 999999999864332
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
... +...+.+.. +++++++||++|+||+++
T Consensus 126 ~~~-------~~~~~~~~~------~~~~~e~Sak~g~gi~e~ 155 (166)
T d1ctqa_ 126 ESR-------QAQDLARSY------GIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp CHH-------HHHHHHHHH------TCCEEECCTTTCTTHHHH
T ss_pred cHH-------HHHHHHHHh------CCeEEEEcCCCCcCHHHH
Confidence 222 233344444 358999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=3.4e-15 Score=101.14 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH----cCCCcEEEEEeCCCCCCc
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT----AGVKHLVVLINKMDDPTV 105 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivv~NK~Dl~~~ 105 (156)
..+.+|||||++++...+..+++.+|++++|+|+++.. +|.....+...+..... .++| +++++||+|+...
T Consensus 52 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (175)
T d1ky3a_ 52 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS---SFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEES 127 (175)
T ss_dssp EEEEEECCC----------CCSTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGG
T ss_pred ccceeeccCCchhhhhHHHHHhhccceEEEEeeccccc---ccchhhhcchhhhhhhhhcccccCc-EEEEecccchhhh
Confidence 56899999999999999999999999999999998743 33322333332222221 2567 8999999998532
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 106 MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... . .+....+.+..+ ..+++++||++|.||+++
T Consensus 128 ~~~v-~----~~~~~~~~~~~~-----~~~~~e~SA~~g~gv~e~ 162 (175)
T d1ky3a_ 128 KKIV-S----EKSAQELAKSLG-----DIPLFLTSAKNAINVDTA 162 (175)
T ss_dssp GCCS-C----HHHHHHHHHHTT-----SCCEEEEBTTTTBSHHHH
T ss_pred hcch-h----HHHHHHHHHHcC-----CCeEEEEeCCCCcCHHHH
Confidence 1100 0 112233334443 468999999999999875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=4.6e-15 Score=100.29 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=75.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~ 106 (156)
....+.+||++|++++...+..+++.+|++++|+|.++ +.+|.....+...+.... ..++| +|+++||+|+....
T Consensus 50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d---~~Sf~~~~~~~~~i~~~~~~~~~p-~ilvgnK~Dl~~~~ 125 (169)
T d1x1ra1 50 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD---KASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR 125 (169)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC
T ss_pred ccccccccccccccccccchhhhhhhccEEEEeccccc---chhhhccchhhHHHHhhccccCcc-EEEEecccchhhhc
Confidence 33678899999999999899999999999999999987 344444444544433332 34677 89999999986432
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCC-CCccC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEK-NPLLL 150 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~-gi~~l 150 (156)
... .++...+.+.+ +++++++||++|. ||+++
T Consensus 126 ~v~------~e~~~~~~~~~------~~~~~e~Sak~~~~nV~~~ 158 (169)
T d1x1ra1 126 KVT------RDQGKEMATKY------NIPYIETSAKDPPLNVDKT 158 (169)
T ss_dssp CSC------HHHHHHHHHHH------TCCEEEEBCSSSCBSHHHH
T ss_pred eee------hhhHHHHHHHc------CCEEEEEcCCCCCcCHHHH
Confidence 111 12234444555 3589999999986 98764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=6.5e-16 Score=104.23 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=77.4
Q ss_pred hcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 13 EKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
.+.+...........++ ..+.+|||+|++++...+..+++.++++|+|+|.+... +|.....+..........+.
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~ 110 (167)
T d1z0ja1 34 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEE---TFSTLKNWVRELRQHGPPSI 110 (167)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTS
T ss_pred ccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhh---hhhhHHHhhhhhhhccCCcc
Confidence 33333333333344433 45789999999999999999999999999999997633 22211222222222222345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++|+||+|+..... .. .++...+.+.. +++++++||++|+||+++
T Consensus 111 ~-iilvgnK~Dl~~~~~--v~----~~~~~~~~~~~------~~~~~e~SAk~~~nV~e~ 157 (167)
T d1z0ja1 111 V-VAIAGNKCDLTDVRE--VM----ERDAKDYADSI------HAIFVETSAKNAININEL 157 (167)
T ss_dssp E-EEEEEECTTCGGGCC--SC----HHHHHHHHHHT------TCEEEECBTTTTBSHHHH
T ss_pred e-EEEecccchhccccc--hh----HHHHHHHHHHc------CCEEEEEecCCCCCHHHH
Confidence 6 899999999852211 11 12233444444 468999999999999875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.4e-15 Score=102.35 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=80.5
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+..+.......+..++ ..+.+|||||++++...+..+++++|++++|+|+++.. ++. .....+..+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~i~~ 107 (177)
T d1x3sa1 34 PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD---TFV---KLDNWLNELET 107 (177)
T ss_dssp TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHTT
T ss_pred CccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCcc---ccc---cchhhhhhhcc
Confidence 34445555555555555544 56999999999999988999999999999999987743 111 12222222222
Q ss_pred ----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 88 ----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...| ++++.||.|......... +...+.+.. +++++++||++|+|++++.
T Consensus 108 ~~~~~~~~-i~~~~nk~d~~~~~v~~~-------~~~~~~~~~------~~~~~e~Sa~tg~gv~e~f 161 (177)
T d1x3sa1 108 YCTRNDIV-NMLVGNKIDKENREVDRN-------EGLKFARKH------SMLFIEASAKTCDGVQCAF 161 (177)
T ss_dssp CCSCSCCE-EEEEEECTTSSSCCSCHH-------HHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred ccccccee-eEEEeeccccccccccHH-------HHHHHHHHC------CCEEEEEeCCCCCCHHHHH
Confidence 2344 789999999754332221 233344444 4689999999999998753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.7e-14 Score=96.15 Aligned_cols=117 Identities=22% Similarity=0.196 Sum_probs=82.4
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS---------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~ 81 (156)
...+|.|.......+..++..+.++||||+.. ....+...+..+|++++|+|++++.. .+....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~-------~~~~~~ 101 (160)
T d1xzpa2 29 TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKI 101 (160)
T ss_dssp CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHH
T ss_pred eccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcc-------hhhhhh
Confidence 34568888888999999999999999999632 23456777889999999999988651 223322
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
... ....+ +++++||+|+..... .+++.+ ..+ .+.+++++||++|+||++|++
T Consensus 102 ~~~--~~~~~-~i~~~~k~d~~~~~~----~~~~~~-------~~~----~~~~~~~vSA~~g~gi~~L~~ 154 (160)
T d1xzpa2 102 LER--IKNKR-YLVVINKVDVVEKIN----EEEIKN-------KLG----TDRHMVKISALKGEGLEKLEE 154 (160)
T ss_dssp HHH--HTTSS-EEEEEEECSSCCCCC----HHHHHH-------HHT----CSTTEEEEEGGGTCCHHHHHH
T ss_pred hhh--ccccc-ceeeeeeccccchhh----hHHHHH-------HhC----CCCcEEEEECCCCCCHHHHHH
Confidence 222 23455 899999999864322 122222 222 246899999999999998753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.5e-15 Score=101.95 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=77.0
Q ss_pred eeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEE
Q psy10355 19 EVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVV 95 (156)
Q Consensus 19 ~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 95 (156)
+.....+..++ ..+.+|||||+.++...+..+++++|++++|+|.++.. +|.....+...+.... ..+.| +++
T Consensus 41 ~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~il 116 (173)
T d2fn4a1 41 DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---SFNEVGKLFTQILRVKDRDDFP-VVL 116 (173)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTSSCCC-EEE
T ss_pred cceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeeccccccc---ccchhhhhhHHHHHHhccCCCc-eEE
Confidence 33334455554 56888999999999999999999999999999998743 2222222222222222 24567 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+||+|+...... . .++...+.+.. ++++++|||++|+||+++
T Consensus 117 vgnK~Dl~~~~~~--~----~~~~~~~~~~~------~~~~~e~Sak~g~gv~e~ 159 (173)
T d2fn4a1 117 VGNKADLESQRQV--P----RSEASAFGASH------HVAYFEASAKLRLNVDEA 159 (173)
T ss_dssp EEECGGGGGGCCS--C----HHHHHHHHHHT------TCEEEECBTTTTBSHHHH
T ss_pred EEEeechhhcccc--c----hhhhhHHHHhc------CCEEEEEeCCCCcCHHHH
Confidence 9999997532111 1 12233444444 468999999999999875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.7e-14 Score=96.01 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+.+........+..++ ..+.+||++|..++......++..+|++++++|.+... +|.....+.+.+.....
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~---s~~~~~~~~~~i~~~~~ 109 (174)
T d1wmsa_ 33 TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQNLSNWKKEFIYYAD 109 (174)
T ss_dssp C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHT
T ss_pred CccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeeccc---ccchhhhHHHHHHHHhc
Confidence 34444444444444455554 56789999999999999999999999999999998632 33333334433332221
Q ss_pred ----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 ----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.+.| +++|+||+|+........ + ...+.+..+ ..+++++||++|+||+++
T Consensus 110 ~~~~~~~p-iilVgnK~Dl~~~~v~~~---~----~~~~~~~~~-----~~~~~e~Sak~~~gI~e~ 163 (174)
T d1wmsa_ 110 VKEPESFP-FVILGNKIDISERQVSTE---E----AQAWCRDNG-----DYPYFETSAKDATNVAAA 163 (174)
T ss_dssp CSCTTTSC-EEEEEECTTCSSCSSCHH---H----HHHHHHHTT-----CCCEEECCTTTCTTHHHH
T ss_pred cccCCCce-EEEeccccchhhccCcHH---H----HHHHHHHcC-----CCeEEEEcCCCCcCHHHH
Confidence 2567 899999999854322221 2 333344432 468999999999999876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=2.4e-15 Score=102.51 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=76.5
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcC---------------hHHHHHhhhhcCCEEEEEEeCCCCcc----ccc
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKS---------------FVPNMIGGTAQADLAVLVISARKGEF----ETG 71 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~---------------~~~~~~~~~~~~d~~ilvvD~~~~~~----~~~ 71 (156)
+..+|+|.+... +.+. .+.++||||+.. +......+++.+|++++|+|+..... ...
T Consensus 28 ~~~~g~T~~~~~--~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~ 103 (184)
T d2cxxa1 28 GKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 103 (184)
T ss_dssp SSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred eCCCCEeecccc--cccc--cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhh
Confidence 456788877543 3443 467899999621 12234556678999999999863210 000
Q ss_pred cCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 72 FDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
......+.+.+..+...++| +++|+||+|+... .......+.+.+. ..+.. ....++|+||++|+|+++|.
T Consensus 104 ~~~~~~d~~~~~~l~~~~~p-~iiv~NK~D~~~~--~~~~~~~~~~~~~-----~~~~~-~~~~~~~vSA~~g~gi~~L~ 174 (184)
T d2cxxa1 104 RGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKN--VQEVINFLAEKFE-----VPLSE-IDKVFIPISAKFGDNIERLK 174 (184)
T ss_dssp TTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSC--HHHHHHHHHHHHT-----CCGGG-HHHHEEECCTTTCTTHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCC-EEEEEeeeehhhh--HHHHHHHHHHHhc-----ccccc-cCCeEEEEECCCCCCHHHHH
Confidence 00124455667777778899 8999999997532 1211222221111 11110 12358999999999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.54 E-value=6.5e-15 Score=99.42 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=69.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+||+||+.++...+..+++++|++++|+|.++.. +|.....+...+.... ..++| +++|+||+|+.....
T Consensus 51 ~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiivgnK~Dl~~~~~ 126 (168)
T d1u8za_ 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQ 126 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCC
T ss_pred cccccccccccccchhhhhhhcccccceeEEEeeccchh---hhhhHHHHHHHHHHhhCCCCCc-EEEEecccccccccc
Confidence 357889999999999999999999999999999998743 2221222322222222 24677 899999999743211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
. .. ++...+.+.. +++++++||++|.|++++
T Consensus 127 v--~~----~~~~~~~~~~------~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 127 V--SV----EEAKNRADQW------NVNYVETSAKTRANVDKV 157 (168)
T ss_dssp S--CH----HHHHHHHHHH------TCEEEECCTTTCTTHHHH
T ss_pred c--cH----HHHHHHHHHc------CCeEEEEcCCCCcCHHHH
Confidence 1 11 2233344444 358999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=4.1e-14 Score=96.25 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=74.3
Q ss_pred cCceeeeeeEEEEe-CCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHH
Q psy10355 14 KGKTVEVGRAYFET-DRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLA 85 (156)
Q Consensus 14 ~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+.|.......... .+..+.+|||||+.+ ....+...+..++++++++|+..... .........+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~-------~~~~~~~~~~ 104 (180)
T d1udxa2 32 PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL-------KTLETLRKEV 104 (180)
T ss_dssp TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH-------HHHHHHHHHH
T ss_pred CCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccc-------cchhhhhhhh
Confidence 34555555544443 567899999999643 33456777889999999999866431 1111111111
Q ss_pred -----HHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 86 -----KTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 86 -----~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
...+.| +++|+||+|+.. ....+.+. ..+.. .+.+++++||++|+|+++|.+
T Consensus 105 ~~~~~~~~~~p-~iiv~NK~D~~~----~~~~~~~~----~~~~~------~~~~~~~iSA~tg~gid~L~~ 161 (180)
T d1udxa2 105 GAYDPALLRRP-SLVALNKVDLLE----EEAVKALA----DALAR------EGLAVLPVSALTGAGLPALKE 161 (180)
T ss_dssp HHHCHHHHHSC-EEEEEECCTTSC----HHHHHHHH----HHHHT------TTSCEEECCTTTCTTHHHHHH
T ss_pred hccccccchhh-hhhhhhhhhhhh----HHHHHHHH----HHHHh------cCCeEEEEEcCCCCCHHHHHH
Confidence 123567 899999999863 22222222 22222 257999999999999998753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=4.9e-15 Score=100.03 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHhhcCceeeeeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH
Q psy10355 10 QKREKGKTVEVGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT 87 (156)
Q Consensus 10 ~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+..+....+.....+..++ ..+.+|||+|++++...+..+++.+|++++|+|.++.. +|+....+.........
T Consensus 30 ~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~ 106 (170)
T d1ek0a_ 30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQ---SFIKARHWVKELHEQAS 106 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSC
T ss_pred ccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCccc---chhhhhhhhhhhccccc
Confidence 34444454444444555544 67999999999999999999999999999999998743 22211222222111112
Q ss_pred cCCCcEEEEEeCCCCCCcch-hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 88 AGVKHLVVLINKMDDPTVMW-SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 88 ~~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...| +++++||+|+..... ...... +...+.+.. +++++++||++|.||+++
T Consensus 107 ~~~~-~~~v~nk~d~~~~~~~~~v~~~----~~~~~~~~~------~~~~~e~Sak~g~gV~e~ 159 (170)
T d1ek0a_ 107 KDII-IALVGNKIDMLQEGGERKVARE----EGEKLAEEK------GLLFFETSAKTGENVNDV 159 (170)
T ss_dssp TTCE-EEEEEECGGGGGSSCCCCSCHH----HHHHHHHHH------TCEEEECCTTTCTTHHHH
T ss_pred cccc-eeeeecccccccccchhhhhHH----HHHHHHHHc------CCEEEEecCCCCcCHHHH
Confidence 2345 899999999742211 010111 223333443 469999999999999874
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.9e-15 Score=102.50 Aligned_cols=112 Identities=10% Similarity=0.117 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhH
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSE 109 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~ 109 (156)
..+.+|||||+++|...+..+++++|++++|+|.++. .+|+....+..........+.| +++++||+|+.......
T Consensus 51 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~Sf~~~~~~~~~~~~~~~~~~~-i~lvgnK~Dl~~~~~~~ 126 (191)
T d2ngra_ 51 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTI 126 (191)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTCC-EEEEEECGGGGGCHHHH
T ss_pred eeeeccccccchhhhhhhhhcccccceeecccccchH---HHHHHHHHHHHHHHhhcCCCCc-eEEEeccccccccchhh
Confidence 5699999999999999999999999999999999873 2332222221111112224677 89999999985321111
Q ss_pred HHHH------HHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 110 ARYN------ECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 110 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.... -..++...+.+..+ ..+++++||++|.||+++
T Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~V~e~ 168 (191)
T d2ngra_ 127 EKLAKNKQKPITPETAEKLARDLK-----AVKYVECSALTQKGLKNV 168 (191)
T ss_dssp HHHHTTTCCCCCHHHHHHHHHHTT-----CSCEEECCTTTCTTHHHH
T ss_pred hhhhhcccccccHHHHHHHHHHcC-----CCeEEEEeCCCCcCHHHH
Confidence 0000 00112233444432 468999999999999875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.4e-16 Score=105.32 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH-HHHHH------cCCCcEEEEEeCCCC
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA-MLAKT------AGVKHLVVLINKMDD 102 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~ivv~NK~Dl 102 (156)
..+.+|||||+++|...+..+++++|++|+|+|+++.. ..+.+ .+... ...+++++|+||+|+
T Consensus 64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl 133 (186)
T d2f7sa1 64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCENPDIVLIGNKADL 133 (186)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred EEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccc----------cceeeeeccchhhhhccCCCceEEEEeeeccc
Confidence 57999999999999999999999999999999997732 22222 22211 122338899999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 103 PTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...... . .++...+.+.. +++++++||++|+|++++
T Consensus 134 ~~~~~v--~----~~e~~~~~~~~------~~~~~e~Sak~~~~i~e~ 169 (186)
T d2f7sa1 134 PDQREV--N----ERQARELADKY------GIPYFETSAATGQNVEKA 169 (186)
T ss_dssp GGGCCS--C----HHHHHHHHHHT------TCCEEEEBTTTTBTHHHH
T ss_pred hhhhcc--h----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 532111 1 12234444554 458999999999999765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9e-15 Score=98.49 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcc
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVM 106 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~ 106 (156)
....+.+||++|+..+...+..+++++|++++|+|.++. .+|+....+...+.... ..++| +++|+||+|+....
T Consensus 49 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~sf~~~~~~~~~~~~~~~~~~~p-~ilvgnK~Dl~~~~ 124 (167)
T d1c1ya_ 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ---STFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH---HHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred eEEEeccccccCcccccccccccccccceeEEeeeccch---hhhHhHHHHHHHHHHhcCCCCCe-EEEEEEecCccccc
Confidence 446799999999999999999999999999999999873 33333333443333222 23567 89999999985332
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 107 WSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
... .+ +...+.++. .+++++++||++|+|++++
T Consensus 125 ~~~--~~----~~~~~~~~~-----~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 125 VVG--KE----QGQNLARQW-----CNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp CSC--HH----HHHHHHHHT-----TSCEEEECBTTTTBSHHHH
T ss_pred ccc--hh----HHHHHHHHh-----CCCEEEEEcCCCCcCHHHH
Confidence 111 11 122333332 2578999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.3e-14 Score=96.62 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHH-cCCCcEEEEEeCCCCCCcchh
Q psy10355 30 KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKT-AGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 30 ~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
..+.+|||||...+. ....+++.+|++++|+|.++.. +|.....+......... .+.| +++|+||+|+......
T Consensus 50 ~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~r~V 124 (168)
T d2atva1 50 VSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV 124 (168)
T ss_dssp EEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS
T ss_pred eEEEEeecccccccc-cchhhhcccccceeecccCCcc---chhhhhhhcccccccccccCcc-eeeeccchhhhhhccC
Confidence 579999999998875 5667889999999999998743 33222333333222222 3567 9999999997422110
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 109 EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
..+ +...+.+.. +++++++||++|.| |+++
T Consensus 125 --~~~----e~~~~a~~~------~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 125 --STE----EGEKLATEL------ACAFYECSACTGEGNITEI 155 (168)
T ss_dssp --CHH----HHHHHHHHH------TSEEEECCTTTCTTCHHHH
T ss_pred --cHH----HHHHHHHHh------CCeEEEEccccCCcCHHHH
Confidence 111 233334444 46899999999985 8764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.4e-15 Score=101.31 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=73.8
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCCC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKMD 101 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~D 101 (156)
+..++ ..+.+|||||..++......+++.+|++++|+|.++.. +|.....+...+. .....++| +++++||+|
T Consensus 45 ~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~D 120 (167)
T d1xtqa1 45 ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKD 120 (167)
T ss_dssp EEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHH---HHHHHHHHHHHHHHHHCSSCCC-EEEEEECTT
T ss_pred EecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhh---hhhhhhhhhhhhhhcccccccc-eeeeccccc
Confidence 44444 56889999999999888889999999999999998743 2222222222222 22234577 899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 102 DPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+...... ..+ +...+.+.+ +++++++||++|.||+++
T Consensus 121 l~~~r~v--~~~----~~~~~a~~~------~~~~~e~Sak~~~~v~~~ 157 (167)
T d1xtqa1 121 LHMERVI--SYE----EGKALAESW------NAAFLESSAKENQTAVDV 157 (167)
T ss_dssp CGGGCCS--CHH----HHHHHHHHH------TCEEEECCTTCHHHHHHH
T ss_pred cccccch--hHH----HHHHHHHHc------CCEEEEEecCCCCCHHHH
Confidence 7532111 112 233344444 358999999999999875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2e-14 Score=97.07 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=73.8
Q ss_pred eeeEEEEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH-HHHcCCCcEEEE
Q psy10355 20 VGRAYFETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML-AKTAGVKHLVVL 96 (156)
Q Consensus 20 ~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv 96 (156)
.....+..++ ..+.+||++|+.++......+++.+|++++|+|.++.. +|.....+...+.. ......| +|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv 116 (171)
T d2erya1 41 SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRG---SFEEIYKFQRQILRVKDRDEFP-MILI 116 (171)
T ss_dssp EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCS-EEEE
T ss_pred ceeeeeeecccccccccccccccccccccccccccccceEEEeecccccc---chhhHHHHhHHHHhhcccCCCC-EEEE
Confidence 3344444544 57999999999999999999999999999999998732 33322333322222 2223566 8999
Q ss_pred EeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 97 INKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 97 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+||+|+....... . ++...+.+.. +++++++||++|.||+++.
T Consensus 117 gnK~Dl~~~~~v~--~----~~~~~~~~~~------~~~~~e~Sak~~~~i~e~f 159 (171)
T d2erya1 117 GNKADLDHQRQVT--Q----EEGQQLARQL------KVTYMEASAKIRMNVDQAF 159 (171)
T ss_dssp EECTTCTTSCSSC--H----HHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred Eeccchhhhccch--H----HHHHHHHHHc------CCEEEEEcCCCCcCHHHHH
Confidence 9999975321111 1 1233444444 4689999999999998753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=7.5e-15 Score=98.83 Aligned_cols=106 Identities=18% Similarity=0.112 Sum_probs=72.0
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEEEEeCCCCCCcch
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
...+.+||++|++.+...+..+++++|++++|+|.++.. +|.....+...+.... ..++| +++|+||+|+.....
T Consensus 50 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~ 125 (167)
T d1kaoa_ 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESERE 125 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCC
T ss_pred eEeeccccCCCccccccchHHHhhcccceeeeeeecchh---hhhhhhchhhhhhhhccCCCCC-EEEEEEccchhhccc
Confidence 357899999999999999999999999999999998732 2222222222222222 23567 899999999753211
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.. .. +...+.+.. +++++++||++|.|++++
T Consensus 126 ~~--~~----~~~~~~~~~------~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 126 VS--SS----EGRALAEEW------GCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp SC--HH----HHHHHHHHH------TSCEEEECTTCHHHHHHH
T ss_pred ch--HH----HHHHHHHHc------CCeEEEECCCCCcCHHHH
Confidence 11 11 223333443 468999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.1e-14 Score=99.52 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=76.7
Q ss_pred CceeeeeeEEEEe--CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----Hc
Q psy10355 15 GKTVEVGRAYFET--DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TA 88 (156)
Q Consensus 15 g~t~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~ 88 (156)
.+........+.. ....+.+|||||+..+...+...+..+|++++|+|.++.. ++.....+.+.+.... ..
T Consensus 34 t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~ 110 (184)
T d1vg8a_ 34 TIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN---TFKTLDSWRDEFLIQASPRDPE 110 (184)
T ss_dssp CCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSSGG
T ss_pred ccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchh---hhhcchhhHHHHHHHhcccccc
Confidence 3333344444443 3467999999999999888899999999999999997632 2221222332222221 13
Q ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++| +++|+||+|+......... ...++... ...++++|||++|.||+++
T Consensus 111 ~ip-~ilv~nK~Dl~~~~~~~~~-------~~~~~~~~-----~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 111 NFP-FVVLGNKIDLENRQVATKR-------AQAWCYSK-----NNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp GSC-EEEEEECTTSSCCCSCHHH-------HHHHHHHT-----TSCCEEECBTTTTBSHHHH
T ss_pred CCC-EEEEEEeecccccchhHHH-------HHHHHHHh-----cCCeEEEEcCCCCcCHHHH
Confidence 567 8999999997543222221 12222222 2578999999999999875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.5e-15 Score=100.34 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
...+.+||++|++.+...+..+++.+|++++|+|+++.. +|+....+..........++| +++|+||+|+......
T Consensus 52 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---sf~~i~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~ 127 (183)
T d1mh1a_ 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA---SFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDT 127 (183)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHH
T ss_pred ceEEEeecccccccchhhhhhcccccceeeeeeccchHH---HHHHHHHHHHHHHHHhCCCCc-EEEEeecccchhhhhh
Confidence 356899999999999999999999999999999998732 222111111111122234578 8999999997432111
Q ss_pred HHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 109 EARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 109 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
...... ...+...+.+.++ ..++++|||++|+||+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~E~SAk~~~~V~e~ 170 (183)
T d1mh1a_ 128 IEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQRGLKTV 170 (183)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHH
T ss_pred hhhhhhccccchhhHHHHHHHHHcC-----CceEEEcCCCCCcCHHHH
Confidence 000000 0011223334432 368999999999999875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.6e-14 Score=96.34 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=81.1
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~ 82 (156)
...+|++.......+...+..+.++|+||..+. ...+..++..+|++++++|+..... ......+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-------~~~~~~~ 102 (161)
T d2gj8a1 30 TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIW 102 (161)
T ss_dssp CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHC
T ss_pred ecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccc-------hhhhhhh
Confidence 346788888888899999999999999997543 3446677889999999999977541 2222222
Q ss_pred H-HHHH--cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 83 M-LAKT--AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 83 ~-~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
. .... .+.| +++|+||+|+....... ++ ....+++++||++|+||++|.+
T Consensus 103 ~~~~~~~~~~~~-iilv~NK~Dl~~~~~~~--------------~~-----~~~~~~~~iSAk~~~gi~~L~~ 155 (161)
T d2gj8a1 103 PEFIARLPAKLP-ITVVRNKADITGETLGM--------------SE-----VNGHALIRLSARTGEGVDVLRN 155 (161)
T ss_dssp HHHHHHSCTTCC-EEEEEECHHHHCCCCEE--------------EE-----ETTEEEEECCTTTCTTHHHHHH
T ss_pred hhhhhhcccccc-eeeccchhhhhhhHHHH--------------HH-----hCCCcEEEEECCCCCCHHHHHH
Confidence 2 2222 3677 89999999974321110 01 1256899999999999998753
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=1e-14 Score=99.46 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
....+.+||++|++.+...+..+++++|++++|+|.++.. +|.....+..........+.| +++|+||+|+.....
T Consensus 48 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---Sf~~~~~~~~~~~~~~~~~~~-iilVgnK~Dl~~~~~ 123 (179)
T d1m7ba_ 48 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVS 123 (179)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHH
T ss_pred eEEeeccccccccccccccccchhhhhhhhheeeecccCC---CHHHHHHHHHHHHhccCCcce-EEEEEecccccccch
Confidence 3366889999999999888889999999999999998742 332222222111222224566 899999999753211
Q ss_pred hHHHHHH------HHHHHHHHHHHcCCCCCCCCeEEEeecccCCC-CccC
Q psy10355 108 SEARYNE------CKDKILPYLKKLGFNAAKDLSFMPCSGELEKN-PLLL 150 (156)
Q Consensus 108 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g-i~~l 150 (156)
....... ..++...+.+..+ ..++++|||++|+| ++++
T Consensus 124 ~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~y~E~SAk~~~n~i~~~ 168 (179)
T d1m7ba_ 124 TLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDI 168 (179)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHH
T ss_pred hhHHHhhhhcCcchHHHHHHHHHHhC-----CCeEEEEeCCCCCcCHHHH
Confidence 1110000 0112333444443 35899999999984 7754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-14 Score=96.49 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=66.8
Q ss_pred eEEEEeCC--eEEEEEeCCC---CcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH-HcCCCcEEE
Q psy10355 22 RAYFETDR--KHFTILDAPG---HKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK-TAGVKHLVV 95 (156)
Q Consensus 22 ~~~~~~~~--~~~~iiDtpG---~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 95 (156)
...+..++ ..+.+||+|| +++| .+..+++++|++|+|+|.++.. +|.....+...+.... ..++| +++
T Consensus 43 ~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~---s~~~~~~~~~~i~~~~~~~~~p-iil 116 (172)
T d2g3ya1 43 ERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA---SFEKASELRIQLRRARQTEDIP-IIL 116 (172)
T ss_dssp EEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHH---HHHHHHHHHHHHHTSGGGTTSC-EEE
T ss_pred eeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccc---hhhhhhhhhhhhhhccccCCce-EEE
Confidence 33444444 4578888664 5555 4566789999999999998742 2221122222221111 13577 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
|+||+|+...... ..++ ...+.+.. +++++++||++|+||+++
T Consensus 117 vgnK~Dl~~~~~v--~~~~----~~~~a~~~------~~~~~e~Sak~g~~i~~~ 159 (172)
T d2g3ya1 117 VGNKSDLVRCREV--SVSE----GRACAVVF------DCKFIETSAAVQHNVKEL 159 (172)
T ss_dssp EEECTTCGGGCCS--CHHH----HHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred Eeccccccccccc--cHHH----HHHHHHHc------CCeEEEEeCCCCcCHHHH
Confidence 9999997532111 1111 22233333 468999999999999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.43 E-value=1.7e-13 Score=94.18 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=73.2
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 29 RKHFTILDAPGHKS-------------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
...+.++|++|... +..........+|++++|+|++.+. ..+..+++..+...++| +++
T Consensus 68 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~-------~~~~~~~~~~l~~~~~p-iiv 139 (195)
T d1svia_ 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP-------SNDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHHHHHHHHHHHTTCC-EEE
T ss_pred cccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccc-------cccccccccccccccCc-cee
Confidence 34567788887521 2334555666789999999998776 36677888888888999 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+||+|+.... ...+..+.+... ++.. .+.+++++||++|+|+++|.
T Consensus 140 v~NK~D~~~~~----~~~~~~~~~~~~---l~~~--~~~~~~~~SA~~~~gi~el~ 186 (195)
T d1svia_ 140 IATKADKIPKG----KWDKHAKVVRQT---LNID--PEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp EEECGGGSCGG----GHHHHHHHHHHH---HTCC--TTSEEEECCTTTCTTHHHHH
T ss_pred chhhccccCHH----HHHHHHHHHHHH---hccc--CCCCEEEEeCCCCCCHHHHH
Confidence 99999975322 222222333322 2222 25689999999999998864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=1.8e-13 Score=93.36 Aligned_cols=121 Identities=20% Similarity=0.162 Sum_probs=73.1
Q ss_pred hcCceeeeeeEEEEe-CCeEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH
Q psy10355 13 EKGKTVEVGRAYFET-DRKHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML 84 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~-~~~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~ 84 (156)
.++.|.......+.+ ++..+.+|||||+.+ ........+..++.++++++...... .............
T Consensus 31 ~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~---~~~~~~~~~~~~~ 107 (185)
T d1lnza2 31 YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG---RDPYDDYLTINQE 107 (185)
T ss_dssp TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC---CCHHHHHHHHHHH
T ss_pred CCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeeccccc---chhhhhhhhhhhc
Confidence 457777777777665 457899999999632 23445666788999999888754321 0000001111111
Q ss_pred HHH-----cCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 85 AKT-----AGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 85 ~~~-----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
... .++| +++|+||+|+... ... +..+.+..+ .+.+++++||++|+|+++|.
T Consensus 108 ~~~~~~~~~~kp-~ivv~NK~Dl~~~---~~~-------~~~~~~~~~----~~~~v~~iSA~~g~Gi~~L~ 164 (185)
T d1lnza2 108 LSEYNLRLTERP-QIIVANKMDMPEA---AEN-------LEAFKEKLT----DDYPVFPISAVTREGLRELL 164 (185)
T ss_dssp HHHSCSSTTTSC-BCBEEECTTSTTH---HHH-------HHHHHHHCC----SCCCBCCCSSCCSSTTHHHH
T ss_pred cchhhhhccCCc-chhhccccchHhH---HHH-------HHHHHHHhc----cCCcEEEEECCCCCCHHHHH
Confidence 111 2467 7999999998631 111 122222332 25789999999999998863
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=5.5e-13 Score=89.19 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=69.3
Q ss_pred eeEEEEeCCeEEEEEeCCCCcChHH-HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHH-HHHcCCCcEEEEEe
Q psy10355 21 GRAYFETDRKHFTILDAPGHKSFVP-NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAML-AKTAGVKHLVVLIN 98 (156)
Q Consensus 21 ~~~~~~~~~~~~~iiDtpG~~~~~~-~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~N 98 (156)
....+......+.+||++|...+.. .+..+++++|++++|+|.++.. +|.....+...+.. ....++| +++|+|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-i~lvgn 117 (165)
T d1z06a1 42 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLANDIP-RILVGN 117 (165)
T ss_dssp EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCSCCC-EEEEEE
T ss_pred eeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhh---hhhhhhhhhHHHHhhccCCCCe-EEEEec
Confidence 3333444557799999999987754 3667889999999999998743 23222222222211 1123567 899999
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCC
Q psy10355 99 KMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKN 146 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~g 146 (156)
|+|+...... ..++...+++.+ +++++++||++|.+
T Consensus 118 K~Dl~~~~~v------~~~~~~~~~~~~------~~~~~e~SAkt~~~ 153 (165)
T d1z06a1 118 KCDLRSAIQV------PTDLAQKFADTH------SMPLFETSAKNPND 153 (165)
T ss_dssp CTTCGGGCCS------CHHHHHHHHHHT------TCCEEECCSSSGGG
T ss_pred cccchhccch------hHHHHHHHHHHC------CCEEEEEecccCCc
Confidence 9997532111 122244455555 35899999998663
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.37 E-value=9.7e-13 Score=86.94 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=75.4
Q ss_pred eeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEE
Q psy10355 19 EVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLV 94 (156)
Q Consensus 19 ~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 94 (156)
.............+.+||+||...+......+++.++++++++|..+... + ......+.... ....| ++
T Consensus 33 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-i~ 105 (160)
T d1r8sa_ 33 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LL 105 (160)
T ss_dssp SCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EE
T ss_pred eeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHH---H---HHHHHHHHHHHHhhcccCce-EE
Confidence 34445566778899999999999999999999999999999999977431 1 11111111111 12345 89
Q ss_pred EEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 95 VLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 95 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++.||.|+....... + +....... +....+++++++||++|+|++++
T Consensus 106 ~v~~k~d~~~~~~~~----~----i~~~~~~~-~~~~~~~~~~~~SAktg~gi~e~ 152 (160)
T d1r8sa_ 106 VFANKQDLPNAMNAA----E----ITDKLGLH-SLRHRNWYIQATCATSGDGLYEG 152 (160)
T ss_dssp EEEECTTSTTCCCHH----H----HHHHTTGG-GCSSCCEEEEECBTTTTBTHHHH
T ss_pred EEeecccccccccHH----H----HHHHHHHH-HHhhCCCEEEEeECCCCCCHHHH
Confidence 999999976432211 1 11111111 11123678999999999999875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.8e-13 Score=91.33 Aligned_cols=108 Identities=12% Similarity=0.061 Sum_probs=66.6
Q ss_pred EEeCC--eEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH---HcCCCcEEEEEeC
Q psy10355 25 FETDR--KHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK---TAGVKHLVVLINK 99 (156)
Q Consensus 25 ~~~~~--~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~NK 99 (156)
+..++ ..+.+|||||+.++. +++.+|++|+|+|.++.. +|+....+...+...+ ..++| +++|+||
T Consensus 45 i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~---Sf~~~~~~~~~i~~~~~~~~~~~p-i~lV~~k 115 (175)
T d2bmja1 45 MLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDEN---SFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQ 115 (175)
T ss_dssp EEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHCC--CCCCE-EEEEEEC
T ss_pred eecCceEEEEEEeecccccccc-----cccccceeEEEeecccch---hhhhhHHHHHHHHHHhhcccCCcc-EEEEeee
Confidence 44455 569999999998753 688999999999998742 2322222332222222 12345 8899999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
.|+.......... ++...++... .+++++++||++|.|++++
T Consensus 116 ~d~d~~~~~~v~~----~~~~~~~~~~-----~~~~~~e~SAk~~~~v~~~ 157 (175)
T d2bmja1 116 DRISASSPRVVGD----ARARALCADM-----KRCSYYETCATYGLNVDRV 157 (175)
T ss_dssp TTCCSSSCCCSCH----HHHHHHHHTS-----TTEEEEEEBTTTTBTHHHH
T ss_pred cCcchhhhcchhH----HHHHHHHHHh-----CCCeEEEeCCCCCcCHHHH
Confidence 8864322211111 1223333332 2568999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.28 E-value=4.2e-12 Score=85.45 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=72.0
Q ss_pred eeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCcEEE
Q psy10355 20 VGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKHLVV 95 (156)
Q Consensus 20 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv 95 (156)
.....+...+..+.++|++|++.....+...+..++++++++|.++... + ........... ..+.| +++
T Consensus 49 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~---~---~~~~~~~~~~~~~~~~~~~p-~ii 121 (177)
T d1zj6a1 49 SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLI 121 (177)
T ss_dssp SSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEE
T ss_pred eeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccc---h---hhhhhhhhhhhhcccccceE-EEE
Confidence 3445666788999999999999988888889999999999999976431 1 11111111111 23556 899
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++||+|+....... ++. ..+..... ...+++++++||++|+|++++
T Consensus 122 v~nK~Dl~~~~~~~----~i~----~~~~~~~~-~~~~~~~~~~Sa~tg~Gi~e~ 167 (177)
T d1zj6a1 122 FANKQDVKECMTVA----EIS----QFLKLTSI-KDHQWHIQACCALTGEGLCQG 167 (177)
T ss_dssp EEECTTSTTCCCHH----HHH----HHHTGGGC-CSSCEEEEECBTTTTBTHHHH
T ss_pred EEEcccccccCcHH----HHH----HHHHHHhh-HhcCCEEEEEeCCCCCCHHHH
Confidence 99999986443221 111 11111111 113578999999999999874
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=5.6e-12 Score=85.84 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=80.2
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcc----hHH---HHHHHH---
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQ----TRE---HAMLAK--- 86 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~----~~~---~~~~~~--- 86 (156)
|.+.....+......+.+|||+|++++...+..+++.++++++|+|.++.. +|..... ..+ .+....
T Consensus 29 t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~e~~~~~~~i~~~~ 105 (195)
T d1svsa1 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD---LVLAEDEEMNRMHESMKLFDSICNNK 105 (195)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG---CBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred CccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccc---hHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 344566778889999999999999999999999999999999999987632 2221111 111 121111
Q ss_pred -HcCCCcEEEEEeCCCCCCcc-------------hhHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEeecccCCCCccC
Q psy10355 87 -TAGVKHLVVLINKMDDPTVM-------------WSEARYNECKDKILPYLKKLG-FNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 -~~~~~~~ivv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+.| +++++||+|+.... .......+....+...+.... ......+.+++|||++|+||+++
T Consensus 106 ~~~~~~-~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~ 183 (195)
T d1svsa1 106 WFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 183 (195)
T ss_dssp GGTTSE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred ccCCCC-EEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHH
Confidence 23456 89999999852100 000111222222222222222 22223566788999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=7.4e-12 Score=85.54 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=82.4
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCC----cchHHHHHHHH----Hc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRG----GQTREHAMLAK----TA 88 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~----~~~~~~~~~~~----~~ 88 (156)
|++.....+......+.+||++|++.+...+..+++.++++++++|.++......+... .+....+..+. ..
T Consensus 32 TiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~ 111 (200)
T d2bcjq2 32 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 111 (200)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGS
T ss_pred eeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhcc
Confidence 55556667788899999999999999999999999999999999999764310000000 11122222222 23
Q ss_pred CCCcEEEEEeCCCCCCcchh--------------HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 89 GVKHLVVLINKMDDPTVMWS--------------EARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.| +++++||.|+...... ........+.+...+...+......+.++.|||++|+||..+
T Consensus 112 ~~~-~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~v 186 (200)
T d2bcjq2 112 NSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 186 (200)
T ss_dssp SSE-EEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHH
T ss_pred Ccc-EEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHH
Confidence 566 8999999996321100 001122222233333333333334566889999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=1.6e-11 Score=84.64 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=62.9
Q ss_pred HhhcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHh----hhhcCCEEEEEEeCCCCccccccCCCcch----HHHH
Q psy10355 11 KREKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIG----GTAQADLAVLVISARKGEFETGFDRGGQT----REHA 82 (156)
Q Consensus 11 e~~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~----~~~~~d~~ilvvD~~~~~~~~~~~~~~~~----~~~~ 82 (156)
+..+++|.......+..++..+.+|||||++++...+.. +...++.+++++|+.... .++.....+ ...+
T Consensus 27 ~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~--~~~~~~~~~l~~~~~~~ 104 (209)
T d1nrjb_ 27 SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSIT 104 (209)
T ss_dssp SCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT--TCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEeccc--ccHHHHHHHHHHHHHHH
Confidence 345677878888888889999999999999876544433 445668999999987643 111101111 1222
Q ss_pred HHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 83 MLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 83 ~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
......++| +++++||+|+......
T Consensus 105 ~~~~~~~~p-iiiv~NK~D~~~~~~~ 129 (209)
T d1nrjb_ 105 ESSCENGID-ILIACNKSELFTARPP 129 (209)
T ss_dssp HHHSTTCCC-EEEEEECTTSTTCCCH
T ss_pred HHHHhccCC-eEEEEEeecccccCcH
Confidence 333345788 8999999998765433
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=7e-10 Score=76.36 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=48.7
Q ss_pred CCeEEEEEeCCCCcChH-HHHHhhhhcCCEEEEEEeCCCCccccccCCCcch-HHHHHHHHH--cCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFV-PNMIGGTAQADLAVLVISARKGEFETGFDRGGQT-REHAMLAKT--AGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~-~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ivv~NK~Dl~ 103 (156)
.+..+.+||+||++++. ..+..+++.++++++|+|+++... .+...... ...+..... .++| +++++||+|++
T Consensus 45 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~--~~~~~~~~l~~~l~~~~~~~~~~p-ilvv~NK~Dl~ 121 (207)
T d2fh5b1 45 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQR--EVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIA 121 (207)
T ss_dssp TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHH--HHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTST
T ss_pred eeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccc--cHHHHHHHHHHHHHhHHHhhcCCc-EEEEEECcccC
Confidence 46789999999999885 456677789999999999976320 00000001 111111111 2345 88999999987
Q ss_pred Ccch
Q psy10355 104 TVMW 107 (156)
Q Consensus 104 ~~~~ 107 (156)
.+..
T Consensus 122 ~a~~ 125 (207)
T d2fh5b1 122 MAKS 125 (207)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 5443
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.11 E-value=1.5e-10 Score=76.60 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=78.0
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchH-HHHHHHH---HcCCC
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTR-EHAMLAK---TAGVK 91 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~ 91 (156)
.|.......+..++..+.++|.+|+..+.......+..++++++++|..+... .... ..+.... ....+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 107 (169)
T d1upta_ 35 PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR-------IGISKSELVAMLEEEELRKA 107 (169)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT-------HHHHHHHHHHHHTCGGGTTC
T ss_pred cccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcch-------hhhccchhhhhhhhhccccc
Confidence 34555566677789999999999999999999999999999999999875431 1111 1111111 12334
Q ss_pred cEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 92 HLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 92 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
++++++||.|+....... ++.+.+. ... . ....++++++||++|+|++++
T Consensus 108 ~i~iv~nk~Dl~~~~~~~----~i~~~~~---~~~-~-~~~~~~~~~~SA~~g~gv~e~ 157 (169)
T d1upta_ 108 ILVVFANKQDMEQAMTSS----EMANSLG---LPA-L-KDRKWQIFKTSATKGTGLDEA 157 (169)
T ss_dssp EEEEEEECTTSTTCCCHH----HHHHHHT---GGG-C-TTSCEEEEECCTTTCTTHHHH
T ss_pred eEEEEEeeccccccccHH----HHHHHHH---HHH-H-hcCCCEEEEEeCCCCCCHHHH
Confidence 488999999986432221 1111111 111 1 113679999999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=1.4e-10 Score=76.16 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=79.4
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCC
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGV 90 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 90 (156)
+.|...........+..+.++|++|...+......++..++++++++|.++... .......+.... ..+.
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~ 102 (166)
T d2qtvb1 29 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER------FDEARVELDALFNIAELKDV 102 (166)
T ss_dssp CCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTCTTTTTC
T ss_pred eceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhh------hhhhhHHHHhhhhhhccCCc
Confidence 445666667777788999999999999999889999999999999999977431 011111111111 1345
Q ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHHHHH--HHHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 91 KHLVVLINKMDDPTVMWSEARYNECKDKILPY--LKKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
| +++++||.|+..... ..++.+.+... ...........+++++|||++|+|++++
T Consensus 103 ~-i~i~~~k~d~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~ 159 (166)
T d2qtvb1 103 P-FVILGNKIDAPNAVS----EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 159 (166)
T ss_dssp C-EEEEEECTTSSSCCC----HHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHH
T ss_pred e-EEEEeccccccccCC----HHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHH
Confidence 6 899999999864321 12222222100 0000011223568999999999999873
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1.1e-10 Score=79.69 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=76.2
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCC--CcchHHH---HHHHH----
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDR--GGQTREH---AMLAK---- 86 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~--~~~~~~~---~~~~~---- 86 (156)
-|++.....+...+..+.+||++|++.+...+..+++.++++++++|.++... ..+.. .....+. +..+.
T Consensus 30 pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 108 (200)
T d1zcba2 30 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ-VLMEDRQTNRLTESLNIFETIVNNRV 108 (200)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTC-EETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcce-eeeecccchhhhHHHHHHHHHhhChh
Confidence 46677778889999999999999999999999999999999999999976531 00100 0111111 11111
Q ss_pred HcCCCcEEEEEeCCCCCCcc--------------hhHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEeecccCCCCccC
Q psy10355 87 TAGVKHLVVLINKMDDPTVM--------------WSEARYNECKDKILPYLKKLGFN-AAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 87 ~~~~~~~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa~~g~gi~~l 150 (156)
..+.| +++++||+|+.... ..+.......+.+...+....-. ....+.++.|||++++||+.+
T Consensus 109 ~~~~p-iilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~v 186 (200)
T d1zcba2 109 FSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 186 (200)
T ss_dssp GTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hcCce-EEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHH
Confidence 23667 89999999964210 01112233344444444432211 112344567999999988653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.6e-09 Score=72.65 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=74.4
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcChHHH---------HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSFVPN---------MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~---------~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+++..........+...+..+|+||....... .......+++++++.|+.... ........
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--------~~~~~~~~ 107 (179)
T d1egaa1 36 KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT--------PDDEMVLN 107 (179)
T ss_dssp CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC--------HHHHHHHH
T ss_pred CCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccc--------hhHHHHHH
Confidence 3444555555666778888999999997543221 111123567888888876543 33444445
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
.+.....| .++++||+|.... . ..+......+.+.++ ..+++++||++|+|+++|.
T Consensus 108 ~l~~~~~~-~i~v~~k~d~~~~---~---~~~~~~~~~~~~~~~-----~~~~~~vSA~~g~gi~~L~ 163 (179)
T d1egaa1 108 KLREGKAP-VILAVNKVDNVQE---K---ADLLPHLQFLASQMN-----FLDIVPISAETGLNVDTIA 163 (179)
T ss_dssp HHHSSSSC-EEEEEESTTTCCC---H---HHHHHHHHHHHTTSC-----CSEEEECCTTTTTTHHHHH
T ss_pred HhhhccCc-eeeeeeeeeccch---h---hhhhhHhhhhhhhcC-----CCCEEEEeCcCCCCHHHHH
Confidence 55556667 7999999997642 1 112222333333332 4689999999999998864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.98 E-value=3.8e-10 Score=79.13 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=64.8
Q ss_pred CeEEEEEeCCCCcChHHHHHhhh-----hcCCEEEEEEeCCCCccccccCCCcchHHHHH-----HHHHcCCCcEEEEEe
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGT-----AQADLAVLVISARKGEFETGFDRGGQTREHAM-----LAKTAGVKHLVVLIN 98 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ivv~N 98 (156)
...+.++|+|||..+........ ...+++++++|+..+. .++...... .....+.| .++++|
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~-------~~~~~~~~~l~~~~~~~~~~~~-~ivvin 165 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILK-------KPNDYCFVRFFALLIDLRLGAT-TIPALN 165 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCC-------SHHHHHHHHHHHHHHHHHHTSC-EEEEEC
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEecccccc-------CchhHhhHHHHHHHHHHHhCCC-ceeeee
Confidence 35699999999987654432222 2356899999997655 233332221 22234678 699999
Q ss_pred CCCCCCcchhHHHHHHHH---------------------HHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 99 KMDDPTVMWSEARYNECK---------------------DKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 99 K~Dl~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
|+|+........ ..... ..+....+... ...+++|+||++|+|+++|.
T Consensus 166 K~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~vSa~~geGi~~L~ 234 (244)
T d1yrba1 166 KVDLLSEEEKER-HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL----PPVRVLYLSAKTREGFEDLE 234 (244)
T ss_dssp CGGGCCHHHHHH-HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS----CCCCCEECCTTTCTTHHHHH
T ss_pred ccccccHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhC----CCCcEEEEECCCCCCHHHHH
Confidence 999875432111 00000 11111111111 35789999999999998763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.96 E-value=2.1e-09 Score=71.96 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=73.8
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHH----HcCCCc
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAK----TAGVKH 92 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 92 (156)
+.......+..++..+.++|++|+..+.......++..+++++++|.++... .......+.... ..+.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~------~~~~~~~~~~~~~~~~~~~~~- 116 (186)
T d1f6ba_ 44 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER------LLESKEELDSLMTDETIANVP- 116 (186)
T ss_dssp CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG------HHHHHHHHHHHHTCGGGTTSC-
T ss_pred ccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccc------hHHHHHHHHHhhcccccCCCc-
Confidence 4445556677888999999999999998888899999999999999876431 011111111111 23577
Q ss_pred EEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCC-----------CCCCCeEEEeecccCCCCccC
Q psy10355 93 LVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFN-----------AAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 93 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+++++||.|+...... ..+.+ .+...... ....++++++||++|+||+++
T Consensus 117 ~li~~~K~D~~~~~~~----~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~ 177 (186)
T d1f6ba_ 117 ILILGNKIDRPEAISE----ERLRE----MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 177 (186)
T ss_dssp EEEEEECTTSTTCCCH----HHHHH----HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred eEEEEeccCccccCCH----HHHHH----HHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHH
Confidence 8999999998643221 12121 11111110 112457999999999999863
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=7.3e-09 Score=69.35 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=67.0
Q ss_pred CceeeeeeEEEEeCCeEEEEEeCCCCcCh--------HHH---HHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 15 GKTVEVGRAYFETDRKHFTILDAPGHKSF--------VPN---MIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 15 g~t~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~---~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
+.+...........+......++++.... ... .......++.++.+.++..+. .......+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 121 (188)
T d1puia_ 49 PGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-------KDLDQQMIE 121 (188)
T ss_dssp ----CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-------CHHHHHHHH
T ss_pred ccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccc-------hhHHHHHHH
Confidence 44444444444455656665565554211 111 122223344566666766654 345556666
Q ss_pred HHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCCC
Q psy10355 84 LAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 84 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
.....+.+ +++++||+|+.... ......+.+...+...+ ...+++++||++|.||++|++
T Consensus 122 ~~~~~~~~-~~~v~~k~D~~~~~----~~~~~~~~~~~~l~~~~----~~~~~i~vSA~~g~Gid~L~~ 181 (188)
T d1puia_ 122 WAVDSNIA-VLVLLTKADKLASG----ARKAQLNMVREAVLAFN----GDVQVETFSSLKKQGVDKLRQ 181 (188)
T ss_dssp HHHHTTCC-EEEEEECGGGSCHH----HHHHHHHHHHHHHGGGC----SCEEEEECBTTTTBSHHHHHH
T ss_pred Hhhhcccc-ccchhhhhhccCHH----HHHHHHHHHHHHHHhhC----CCCcEEEEeCCCCCCHHHHHH
Confidence 66667777 79999999986432 22333333444443332 246899999999999998753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.87 E-value=1.4e-09 Score=75.84 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=60.8
Q ss_pred eeeeeeEEEEeCCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccC-CCcchHHH---HHHHHH----c
Q psy10355 17 TVEVGRAYFETDRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFD-RGGQTREH---AMLAKT----A 88 (156)
Q Consensus 17 t~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~-~~~~~~~~---~~~~~~----~ 88 (156)
|++.....+..++..+.+||++|++.+...|..++.+++++++|+|.+......... ......+. +..+.. .
T Consensus 34 TiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~ 113 (221)
T d1azta2 34 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113 (221)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGS
T ss_pred CCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhC
Confidence 556667778889999999999999999999999999999999999987532100000 01112222 222221 3
Q ss_pred CCCcEEEEEeCCCCC
Q psy10355 89 GVKHLVVLINKMDDP 103 (156)
Q Consensus 89 ~~~~~ivv~NK~Dl~ 103 (156)
++| +++++||+|+.
T Consensus 114 ~~~-iil~~NK~Dl~ 127 (221)
T d1azta2 114 TIS-VILFLNKQDLL 127 (221)
T ss_dssp SCE-EEEEEECHHHH
T ss_pred CCc-EEEEechhhhh
Confidence 577 99999999974
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=4.2e-08 Score=74.01 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=70.8
Q ss_pred ceeeeeeEEEEeCCeEEEEEeCCCCcChHH-----HHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCC
Q psy10355 16 KTVEVGRAYFETDRKHFTILDAPGHKSFVP-----NMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGV 90 (156)
Q Consensus 16 ~t~~~~~~~~~~~~~~~~iiDtpG~~~~~~-----~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (156)
+|.+...+.. .++.++.+|||||...... .....+..+|.++++.|.. . ..++.+.+..+...+.
T Consensus 94 tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~--~-------~~~d~~l~~~l~~~~k 163 (400)
T d1tq4a_ 94 VTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR--F-------KKNDIDIAKAISMMKK 163 (400)
T ss_dssp --CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC--C-------CHHHHHHHHHHHHTTC
T ss_pred Cceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCC--C-------CHHHHHHHHHHHHcCC
Confidence 4554444332 2455699999999854321 1233456788888877643 2 2566677788888888
Q ss_pred CcEEEEEeCCCCCCc---------chhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccC
Q psy10355 91 KHLVVLINKMDDPTV---------MWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELE 144 (156)
Q Consensus 91 ~~~ivv~NK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 144 (156)
| +++|+||+|.... ......++.+++.+...++..+.. ..+++.+|+...
T Consensus 164 ~-~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~---~~~vflvS~~~~ 222 (400)
T d1tq4a_ 164 E-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNV 222 (400)
T ss_dssp E-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCT
T ss_pred C-EEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEecCCcc
Confidence 8 8999999995311 012223455556666666666653 357899997643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=6.3e-08 Score=67.63 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=57.1
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..+.|.+++|+++.++.+. .......+..+...+++ .++|+||+||.... ......+.+...+...|
T Consensus 8 vANiD~~~iV~s~~~P~~~-----~~~idR~Lv~a~~~~i~-pvIvlnK~DL~~~~----~~~~~~~~~~~~y~~~g--- 74 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDLIEDQ----DTEDTIQAYAEDYRNIG--- 74 (231)
T ss_dssp EECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGGCCCH----HHHHHHHHHHHHHHHHT---
T ss_pred ccccCEEEEEEECCCCCCC-----HHHHHHHHHHHHHcCCC-EEEEEecccccccH----HHHHHHHHHHHHHhhcc---
Confidence 4688999999988654320 12334455666678898 58899999987421 12222223333444443
Q ss_pred CCCCeEEEeecccCCCCccCCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLGI 152 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~~ 152 (156)
++++.+||+++.|+++|+.
T Consensus 75 ---~~v~~~Sa~~~~gl~~L~~ 93 (231)
T d1t9ha2 75 ---YDVYLTSSKDQDSLADIIP 93 (231)
T ss_dssp ---CCEEECCHHHHTTCTTTGG
T ss_pred ---ccceeeecCChhHHHHHHH
Confidence 5899999999999999875
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.50 E-value=2e-07 Score=66.75 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=54.6
Q ss_pred HHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHH
Q psy10355 44 VPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYL 123 (156)
Q Consensus 44 ~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 123 (156)
.+.....+..+|++++|+|+..+.. .........+ .+.| .|+|+||+|+.. ....++ ....+
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~s-------s~~~~l~~~~--~~Kp-~IlVlNK~DLv~----~~~~~~----w~~~f 67 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADKAD----AAVTQQ----WKEHF 67 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGGSC----HHHHHH----HHHHH
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCC-------CCCHHHHHHH--cCCC-eEEEEECccCCc----hHHHHH----HHHHH
Confidence 4566778899999999999988762 3333333332 3667 799999999873 221222 22333
Q ss_pred HHcCCCCCCCCeEEEeecccCCCCccC
Q psy10355 124 KKLGFNAAKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 124 ~~~~~~~~~~~~~i~~Sa~~g~gi~~l 150 (156)
+.. ..+.+++||.++.|...+
T Consensus 68 ~~~------~~~~i~isa~~~~~~~~~ 88 (273)
T d1puja_ 68 ENQ------GIRSLSINSVNGQGLNQI 88 (273)
T ss_dssp HTT------TCCEEECCTTTCTTGGGH
T ss_pred Hhc------CCccceeecccCCCcccc
Confidence 332 357899999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=1e-07 Score=66.30 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=54.0
Q ss_pred hhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCC
Q psy10355 51 TAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWSEARYNECKDKILPYLKKLGFNA 130 (156)
Q Consensus 51 ~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (156)
..+.|.+++|+.+..+.+. .......+..+...+++ .++|+||+||.. ....+.+.+ ......
T Consensus 8 vANiD~vliV~s~~~P~~~-----~~~ldR~Lv~a~~~~i~-pvIvlnK~DL~~----~~~~~~~~~----~~~~~~--- 70 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETS-----TYIIDKFLVLAEKNELE-TVMVINKMDLYD----EDDLRKVRE----LEEIYS--- 70 (225)
T ss_dssp EESCCEEEEEECSSTTCCC-----HHHHHHHHHHHHHTTCE-EEEEECCGGGCC----HHHHHHHHH----HHHHHT---
T ss_pred cccCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHcCCC-EEEEEeCcccCC----HHHHHHHHH----hhcccc---
Confidence 4678999999988654320 12234456666678999 689999999863 222222222 222211
Q ss_pred CCCCeEEEeecccCCCCccCC
Q psy10355 131 AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 131 ~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
...+++.+||++|+|++.|+
T Consensus 71 -~~~~v~~vSa~~~~g~~~L~ 90 (225)
T d1u0la2 71 -GLYPIVKTSAKTGMGIEELK 90 (225)
T ss_dssp -TTSCEEECCTTTCTTHHHHH
T ss_pred -cceeEEEeccccchhHhhHH
Confidence 13589999999999998875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.20 E-value=1.1e-05 Score=56.82 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=56.3
Q ss_pred hcCceeeeeeEEEEeCCeEEEEEeCCCCcCh-------HHHHH--hhhhcCCEEEEEEeCCCCccccccCCCcchHHHHH
Q psy10355 13 EKGKTVEVGRAYFETDRKHFTILDAPGHKSF-------VPNMI--GGTAQADLAVLVISARKGEFETGFDRGGQTREHAM 83 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~--~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~ 83 (156)
..+.|.......+..++..+.+|||||..+. ..... ......+++++|++.....+ .......+.
T Consensus 63 ~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~------~~~~~~~l~ 136 (257)
T d1h65a_ 63 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAK 136 (257)
T ss_dssp SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHH
T ss_pred CCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCC------CHHHHHHHH
Confidence 4588888888999999999999999998532 11121 22245688999998865432 233333333
Q ss_pred HHHH-cC---CCcEEEEEeCCCCCC
Q psy10355 84 LAKT-AG---VKHLVVLINKMDDPT 104 (156)
Q Consensus 84 ~~~~-~~---~~~~ivv~NK~Dl~~ 104 (156)
.+.. .| .+++|+|+||+|...
T Consensus 137 ~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 137 AITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp HHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHcchhhhhCEEEEEECcccCC
Confidence 3332 12 234899999999764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.6e-06 Score=62.36 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=57.3
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcchh
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMWS 108 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~~ 108 (156)
++.+.|+.|.|.-. .-......+|.+++|+++..|.- .+....-+ + .++. ++|+||+|+....
T Consensus 146 g~d~iliEtvG~gq---~e~~i~~~aD~~l~v~~P~~Gd~------iq~~k~gi--~---e~aD-i~VvNKaD~~~~~-- 208 (327)
T d2p67a1 146 GYDVVIVETVGVGQ---SETEVARMVDCFISLQIAGGGDD------LQGIKKGL--M---EVAD-LIVINKDDGDNHT-- 208 (327)
T ss_dssp TCSEEEEEEECCTT---HHHHHHTTCSEEEEEECC------------CCCCHHH--H---HHCS-EEEECCCCTTCHH--
T ss_pred CCCeEEEeeccccc---cchhhhhccceEEEEecCCCchh------hhhhchhh--h---cccc-EEEEEeecccchH--
Confidence 35677777777532 12345567899999998866541 01111111 1 1243 7799999986432
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCccCC
Q psy10355 109 EARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
........+...+....... ....|++.+||++|+|+++|-
T Consensus 209 --~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~ 250 (327)
T d2p67a1 209 --NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 250 (327)
T ss_dssp --HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred --HHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHH
Confidence 22233333444444332211 124589999999999998763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=97.84 E-value=1.4e-05 Score=58.25 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=57.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCCCcch
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDPTVMW 107 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~~~~~ 107 (156)
-++.+.|+-|.|.-.-. ......+|..++|+.+..|. + -|... ... ..+.. ++|+||+|+.+..
T Consensus 142 ~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD-~------iQ~~k-~gi---lE~aD-i~vvNKaD~~~~~- 205 (323)
T d2qm8a1 142 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGD-E------LQGIK-KGI---FELAD-MIAVNKADDGDGE- 205 (323)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC-------------CC-TTH---HHHCS-EEEEECCSTTCCH-
T ss_pred CCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchh-h------hhhhh-hhH---hhhhh-eeeEeccccccch-
Confidence 34678888888864322 22334589999999987654 1 00000 000 11233 7899999976432
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEeecccCCCCccC
Q psy10355 108 SEARYNECKDKILPYLKKLGFNA-AKDLSFMPCSGELEKNPLLL 150 (156)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~g~gi~~l 150 (156)
.....+.......+....... ....+++.+||++|+|+++|
T Consensus 206 --~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el 247 (323)
T d2qm8a1 206 --RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL 247 (323)
T ss_dssp --HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHH
T ss_pred --HHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHH
Confidence 112222333333332222111 12458999999999999876
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.59 E-value=0.00027 Score=50.52 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=48.3
Q ss_pred eeeeeeEEEEeC-CeEEEEEeCCCCcC-------------hHHHHHhhhhcCCEEEEE-EeCCCCccccccCCCcchHHH
Q psy10355 17 TVEVGRAYFETD-RKHFTILDAPGHKS-------------FVPNMIGGTAQADLAVLV-ISARKGEFETGFDRGGQTREH 81 (156)
Q Consensus 17 t~~~~~~~~~~~-~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~ilv-vD~~~~~~~~~~~~~~~~~~~ 81 (156)
+.+.....+... -..+.++||||... ....+..++..++.++++ +++..... .......
T Consensus 117 ~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~------~~~~~~~ 190 (306)
T d1jwyb_ 117 SAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDALQL 190 (306)
T ss_dssp CCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHHHH
T ss_pred cccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc------ccHHHHH
Confidence 333334444433 35699999999743 235577788899975555 45554431 2333344
Q ss_pred HHHHHHcCCCcEEEEEeCCCCCC
Q psy10355 82 AMLAKTAGVKHLVVLINKMDDPT 104 (156)
Q Consensus 82 ~~~~~~~~~~~~ivv~NK~Dl~~ 104 (156)
...+...+.+ +++|+||+|...
T Consensus 191 ~~~~~~~~~r-~i~Vitk~D~~~ 212 (306)
T d1jwyb_ 191 AKEVDPEGKR-TIGVITKLDLMD 212 (306)
T ss_dssp HHHHCSSCSS-EEEEEECTTSSC
T ss_pred HHHhCcCCCe-EEEEEecccccc
Confidence 4444333445 899999999764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.37 E-value=0.00021 Score=50.85 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHhhhhcCCEE-EEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEE
Q psy10355 29 RKHFTILDAPGHKS-------------FVPNMIGGTAQADLA-VLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLV 94 (156)
Q Consensus 29 ~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~~-ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (156)
-..+.++||||.-. ....+..++...+.+ ++|.++..... ..........+...+.+ .+
T Consensus 124 ~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~------~~~~~~~~~~~~~~~~r-~i 196 (299)
T d2akab1 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------NSDALKIAKEVDPQGQR-TI 196 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG------GCHHHHHHHHHCTTCSS-EE
T ss_pred CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchh------hhHHHHHHHHhCcCCCc-ee
Confidence 35699999999732 134566777777754 55666655441 12223333433333445 89
Q ss_pred EEEeCCCCCC
Q psy10355 95 VLINKMDDPT 104 (156)
Q Consensus 95 vv~NK~Dl~~ 104 (156)
+|+||+|+..
T Consensus 197 ~Vltk~D~~~ 206 (299)
T d2akab1 197 GVITKLDLMD 206 (299)
T ss_dssp EEEECGGGSC
T ss_pred eEEecccccc
Confidence 9999999754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.0015 Score=44.32 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCCcChHHH-------HHhhhh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPN-------MIGGTA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~-------~~~~~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
.+..+.|+||||....... .....+ ..+-.++|+|++.+. ....+........++. -+
T Consensus 90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--------~~~~~~~~~~~~~~~~--~l 159 (211)
T d2qy9a2 90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--------NAVSQAKLFHEAVGLT--GI 159 (211)
T ss_dssp TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--------HHHHHHHHHHHHSCCC--EE
T ss_pred cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--------chHHHHhhhhhccCCc--eE
Confidence 4568999999996443221 122222 135789999998764 3344455555556766 45
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+|....... +....... +.|+..+| +|+++++|.
T Consensus 160 IlTKlDe~~~~G~----------~l~~~~~~------~~Pi~~i~--~Gq~v~Dl~ 197 (211)
T d2qy9a2 160 TLTKLDGTAKGGV----------IFSVADQF------GIPIRYIG--VGERIEDLR 197 (211)
T ss_dssp EEECCTTCTTTTH----------HHHHHHHH------CCCEEEEE--CSSSGGGEE
T ss_pred EEeecCCCCCccH----------HHHHHHHH------CCCEEEEe--CCCCcccCc
Confidence 8999996432111 11222222 45777666 788886653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.20 E-value=0.0026 Score=43.04 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=42.0
Q ss_pred CeEEEEEeCCCCcChH----HHHHhh---h-----hcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEE
Q psy10355 29 RKHFTILDAPGHKSFV----PNMIGG---T-----AQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVL 96 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~----~~~~~~---~-----~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 96 (156)
++.+.|+||||...+. ..+... . ...+-.++|+|++.+. ....+........++. =++
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--------~~~~~~~~~~~~~~~~--~lI 157 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--------NGLEQAKKFHEAVGLT--GVI 157 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--------HHHHHHHHHHHHHCCS--EEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--------hHHHHHHHhhhccCCc--eEE
Confidence 5689999999964432 222221 1 1346789999998864 3444555555566777 448
Q ss_pred EeCCCCC
Q psy10355 97 INKMDDP 103 (156)
Q Consensus 97 ~NK~Dl~ 103 (156)
++|+|..
T Consensus 158 ~TKlDet 164 (207)
T d1okkd2 158 VTKLDGT 164 (207)
T ss_dssp EECTTSS
T ss_pred EeccCCC
Confidence 9999964
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.0011 Score=45.13 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCcChHHH----HHhh---hh-----cCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEE
Q psy10355 28 DRKHFTILDAPGHKSFVPN----MIGG---TA-----QADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVV 95 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~----~~~~---~~-----~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 95 (156)
+++.+.|+||||...+... .... .. ..+-.++|+|++.+. ....+........++. =+
T Consensus 92 ~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--------~~~~~~~~~~~~~~~~--~l 161 (213)
T d1vmaa2 92 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--------NGLVQAKIFKEAVNVT--GI 161 (213)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--------HHHHHHHHHHHHSCCC--EE
T ss_pred cCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--------chhhhhhhhccccCCc--eE
Confidence 4678999999996544222 1111 11 135689999997753 3334444555556766 45
Q ss_pred EEeCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 96 LINKMDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 96 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+++|+|....-. . +....... +.|+..++ +|++++.|.
T Consensus 162 I~TKlDe~~~~G-~---------~l~~~~~~------~~Pi~~i~--~Gq~v~Dl~ 199 (213)
T d1vmaa2 162 ILTKLDGTAKGG-I---------TLAIAREL------GIPIKFIG--VGEKAEDLR 199 (213)
T ss_dssp EEECGGGCSCTT-H---------HHHHHHHH------CCCEEEEE--CSSSGGGEE
T ss_pred EEecccCCCccc-H---------HHHHHHHH------CCCEEEEe--CCCCcccCc
Confidence 899999643211 1 11122222 45776666 688887654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.14 E-value=0.002 Score=43.73 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCCcChH------HHHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeC
Q psy10355 28 DRKHFTILDAPGHKSFV------PNMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~------~~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK 99 (156)
.+..+.++||||...+. ..... .....+-.++|+|++.+. .............++. -++++|
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--------~~~~~~~~~~~~~~~~--~lI~TK 162 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--------KAYDLASKFNQASKIG--TIIITK 162 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--------GHHHHHHHHHHHCTTE--EEEEEC
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--------chHHHHhhhhcccCcc--eEEEec
Confidence 56789999999964321 12221 123456789999997753 2333344444445555 357999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEeecccCCCCccCC
Q psy10355 100 MDDPTVMWSEARYNECKDKILPYLKKLGFNAAKDLSFMPCSGELEKNPLLLG 151 (156)
Q Consensus 100 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gi~~l~ 151 (156)
+|.... .-. +....... +.|+..+| .|+++++|.
T Consensus 163 lDet~~------~G~----~l~~~~~~------~lPi~~it--~Gq~v~DL~ 196 (211)
T d1j8yf2 163 MDGTAK------GGG----ALSAVAAT------GATIKFIG--TGEKIDELE 196 (211)
T ss_dssp TTSCSC------HHH----HHHHHHTT------TCCEEEEE--CSSSTTCEE
T ss_pred ccCCCc------ccH----HHHHHHHH------CcCEEEEe--CCCCcccCc
Confidence 996532 111 12222222 45777666 588887653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.59 E-value=0.013 Score=39.39 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcChHH----HHHh--hhhcCCEEEEEEeCCCCccccccCCCcchHHHHH-HHHHcCCCcEEEEEeCC
Q psy10355 28 DRKHFTILDAPGHKSFVP----NMIG--GTAQADLAVLVISARKGEFETGFDRGGQTREHAM-LAKTAGVKHLVVLINKM 100 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~----~~~~--~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~NK~ 100 (156)
.+..+.+|||||...... .+.. ...+.+-+++|+|+..+. ....... .....++. =++++|+
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~---------~~~~~~~~f~~~~~~~--~~I~TKl 159 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 159 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCC--EEEEECG
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch---------hHHHHHHHHHhhCCCC--eeEEeec
Confidence 456899999999644322 2222 224568899999997753 2333333 23345666 3589999
Q ss_pred CCC
Q psy10355 101 DDP 103 (156)
Q Consensus 101 Dl~ 103 (156)
|..
T Consensus 160 De~ 162 (207)
T d1ls1a2 160 DGD 162 (207)
T ss_dssp GGC
T ss_pred Ccc
Confidence 954
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.24 E-value=0.02 Score=38.34 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy10355 28 DRKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDDP 103 (156)
Q Consensus 28 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl~ 103 (156)
+.+.+.++|+|+... ..+...+..+|.+++++.+.... .....+.+..+...+++..-+++||.+..
T Consensus 110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~~s-------~~~~~~~~~~~~~~~~~~~giv~N~~~~~ 176 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISC-------LTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHH-------HHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEccccccc--ccchhhhhhhhccccccccccee-------cchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence 347899999998754 34556677899999999875422 13445566666677887333799999864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.24 E-value=0.017 Score=40.96 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=23.1
Q ss_pred eEEEEEeCCCCcCh-------HHHHHhhhhcCCEEEEEEeCCC
Q psy10355 30 KHFTILDAPGHKSF-------VPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 30 ~~~~iiDtpG~~~~-------~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
..+.++|+||.... .......++.+|++++|||+..
T Consensus 71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 56999999997432 2234455678999999999863
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.92 E-value=0.055 Score=35.97 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCcChHHHHHhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEEeCCCC
Q psy10355 29 RKHFTILDAPGHKSFVPNMIGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLINKMDD 102 (156)
Q Consensus 29 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~NK~Dl 102 (156)
.+.+.++|+|+... ......+..+|.+++|+.+.... .......+......+.+.+-+++||.+.
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISS-------ITDGLKTKIVAERLGTKVLGVVVNRITT 173 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHH-------HHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccccc-------hhhhhhhhhhhhhccccccccccccccc
Confidence 46789999999754 34555677899999999874322 1233344455556677644578999884
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.66 E-value=0.059 Score=37.82 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=40.5
Q ss_pred cCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcC-------hHHHHHhhhhcCCEEEEEEeCCC
Q psy10355 14 KGKTVEVGRAYFETDR-----------------KHFTILDAPGHKS-------FVPNMIGGTAQADLAVLVISARK 65 (156)
Q Consensus 14 ~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~-------~~~~~~~~~~~~d~~ilvvD~~~ 65 (156)
+++|+++..+.+...+ ..+.++|.||... +.......++.||++++|||+..
T Consensus 42 pftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 42 PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 5888888888777654 4689999999642 23467777899999999999854
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.073 Score=35.77 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=33.4
Q ss_pred EEEEEeCCCCcChHHHHH--------hhhhcCCEEEEEEeCCCCccccccCCCcchH--H-HHHHHHHcCCCcEEEEEeC
Q psy10355 31 HFTILDAPGHKSFVPNMI--------GGTAQADLAVLVISARKGEFETGFDRGGQTR--E-HAMLAKTAGVKHLVVLINK 99 (156)
Q Consensus 31 ~~~iiDtpG~~~~~~~~~--------~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ivv~NK 99 (156)
...++-+.|.-+-..... ...-..++++.|+|+..+. .... . ...++. -.. ++++||
T Consensus 91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~--------~~~~~~~~~~~Qi~--~AD--~ivlNK 158 (222)
T d1nija1 91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--------EQMNQFTIAQSQVG--YAD--RILLTK 158 (222)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHH--------HHHHHCHHHHHHHH--TCS--EEEEEC
T ss_pred ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhh--------hhhhhhHHHHHHHH--hCC--cccccc
Confidence 356777777654322211 1112357889999997653 1111 1 112222 123 679999
Q ss_pred CCCCC
Q psy10355 100 MDDPT 104 (156)
Q Consensus 100 ~Dl~~ 104 (156)
+|+..
T Consensus 159 ~Dl~~ 163 (222)
T d1nija1 159 TDVAG 163 (222)
T ss_dssp TTTCS
T ss_pred ccccc
Confidence 99863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.08 E-value=0.13 Score=35.60 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=37.0
Q ss_pred hcCceeeeeeEEEEeCC-----------------eEEEEEeCCCCcChH-------HHHHhhhhcCCEEEEEEeCC
Q psy10355 13 EKGKTVEVGRAYFETDR-----------------KHFTILDAPGHKSFV-------PNMIGGTAQADLAVLVISAR 64 (156)
Q Consensus 13 ~~g~t~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~-------~~~~~~~~~~d~~ilvvD~~ 64 (156)
-+.+|+++..+.+...+ ..+.++|.||.-.-- ..-.+.++.||+++.|||+.
T Consensus 32 ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 32 YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp -CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence 45677787777776543 258899999974321 23456678899999999974
|
| >d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N-(deoxy)ribosyltransferase-like family: N-deoxyribosyltransferase domain: Purine transdeoxyribosylase species: Lactobacillus helveticus [TaxId: 1587]
Probab=82.13 E-value=1.9 Score=27.16 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=30.1
Q ss_pred HhhhhcCCEEEEEEeCCCCccccccCCCcchHHHHHHHHHcCCCcEEEEE
Q psy10355 48 IGGTAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLI 97 (156)
Q Consensus 48 ~~~~~~~d~~ilvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 97 (156)
...++.||++|.++|.... ...+...+-++...|+| ++++.
T Consensus 76 ~~~i~~sD~vIA~ldg~~~--------D~GTa~EiG~A~a~gKP-vi~~~ 116 (167)
T d1s2da_ 76 LTGISNATCGVFLYDMDQL--------DDGSAFEIGFMRAMHKP-VILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSC--------CHHHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHCCEEEEEeCCCCC--------CccHHHHHHHHHHCCCe-EEEEe
Confidence 3566889999999998553 24566677888888999 66554
|