Psyllid ID: psy10356

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MRTRGHATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE
cccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEccEEEEEEcccccccccEEEEccccEEEEEEEEEEEc
ccccccEccccccccHHHHHEEEEccHHHHHEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccHcccccEEccccEEEEEEccccccEEccccccccccHHHHHccHHHEEEEEEEEccc
mrtrghatvkgegmlWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIdkktgeksktrprfvkQDQIAIMRLEAAGVicldqfklfpqmgrftlrdegktiaIGKVLKIVE
mrtrghatvkgegmlwqeQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIdkktgeksktrprfvkqdqIAIMRLEAAGVICLDQFKLFPQMGRftlrdegktiaigkvlkive
MRTRGHATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE
***********EGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKT********RFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI**
**TRGHA*VKG******EQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK**********RFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE
MRTRGHATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE
**********GEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV*
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ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRTRGHATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
Q8R050636 Eukaryotic peptide chain yes N/A 0.767 0.155 0.777 8e-42
Q149F3632 Eukaryotic peptide chain no N/A 0.782 0.159 0.752 1e-40
Q5R4B3628 Eukaryotic peptide chain yes N/A 0.782 0.160 0.752 2e-40
Q8IYD1628 Eukaryotic peptide chain no N/A 0.782 0.160 0.752 2e-40
P15170499 Eukaryotic peptide chain no N/A 0.767 0.198 0.777 3e-40
P05453685 Eukaryotic peptide chain yes N/A 0.798 0.150 0.485 3e-22
Q9HGI8700 Eukaryotic peptide chain yes N/A 0.798 0.147 0.475 7e-21
Q9HGI4662 Eukaryotic peptide chain no N/A 0.798 0.155 0.446 2e-20
P23637741 Eukaryotic peptide chain N/A N/A 0.767 0.133 0.464 6e-20
O74718662 Eukaryotic peptide chain yes N/A 0.767 0.149 0.47 4e-19
>sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=2 Back     alignment and function desciption
 Score =  168 bits (426), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/99 (77%), Positives = 86/99 (86%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           IVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I R
Sbjct: 534 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIAR 593

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128
           L  AG ICL+ FK FPQMGRFTLRDEGKTIAIGKVLK+V
Sbjct: 594 LRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 632
Involved in translation termination in response to the termination codons UAA, UAG and UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.
Mus musculus (taxid: 10090)
>sp|Q149F3|ERF3B_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R4B3|ERF3B_PONAB Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYD1|ERF3B_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2 Back     alignment and function description
>sp|P15170|ERF3A_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1 Back     alignment and function description
>sp|P05453|ERF3_YEAST Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUP35 PE=1 SV=1 Back     alignment and function description
>sp|Q9HGI8|ERF3_KLULA Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SUP35 PE=3 SV=1 Back     alignment and function description
>sp|Q9HGI4|ERF3_ZYGRO Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2 Back     alignment and function description
>sp|P23637|ERF3_OGAPI Eukaryotic peptide chain release factor GTP-binding subunit OS=Ogataea pini GN=SUP2 PE=3 SV=1 Back     alignment and function description
>sp|O74718|ERF3_SCHPO Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sup35 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
242009574 575 eukaryotic peptide chain release factor 0.775 0.173 0.89 5e-49
194761374 634 GF14198 [Drosophila ananassae] gi|190616 0.775 0.157 0.88 7e-48
307196745 611 Eukaryotic peptide chain release factor 0.775 0.163 0.88 1e-47
350414918 598 PREDICTED: eukaryotic peptide chain rele 0.775 0.167 0.88 1e-47
48142864 598 PREDICTED: eukaryotic peptide chain rele 0.775 0.167 0.88 1e-47
340720537 596 PREDICTED: eukaryotic peptide chain rele 0.775 0.167 0.88 1e-47
345485415 652 PREDICTED: eukaryotic peptide chain rele 0.775 0.153 0.88 2e-47
383860550 598 PREDICTED: eukaryotic peptide chain rele 0.775 0.167 0.88 2e-47
380015643 598 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.775 0.167 0.88 2e-47
195435067 640 GK15498 [Drosophila willistoni] gi|19416 0.775 0.156 0.87 2e-47
>gi|242009574|ref|XP_002425558.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis] gi|212509437|gb|EEB12820.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/100 (89%), Positives = 98/100 (98%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           +VILEHKSIICAGYSAVMHIHCVAEEV VKALICL+DKKTG+KSKTRPRFVKQDQ+AIMR
Sbjct: 476 VVILEHKSIICAGYSAVMHIHCVAEEVTVKALICLVDKKTGDKSKTRPRFVKQDQVAIMR 535

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
           +E AGVIC++QFKLFPQMGRFTLRDEGKTIAIGKVLK++E
Sbjct: 536 IECAGVICMEQFKLFPQMGRFTLRDEGKTIAIGKVLKVIE 575

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194761374|ref|XP_001962904.1| GF14198 [Drosophila ananassae] gi|190616601|gb|EDV32125.1| GF14198 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|307196745|gb|EFN78204.1| Eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350414918|ref|XP_003490469.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|48142864|ref|XP_397380.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B [Apis mellifera] Back     alignment and taxonomy information
>gi|340720537|ref|XP_003398691.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345485415|ref|XP_001605609.2| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383860550|ref|XP_003705752.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380015643|ref|XP_003691809.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Apis florea] Back     alignment and taxonomy information
>gi|195435067|ref|XP_002065523.1| GK15498 [Drosophila willistoni] gi|194161608|gb|EDW76509.1| GK15498 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
FB|FBgn0020443619 Elf "Ef1alpha-like factor" [Dr 0.775 0.161 0.86 8.1e-44
ZFIN|ZDB-GENE-040822-36564 gspt1 "G1 to S phase transitio 0.767 0.175 0.797 9.9e-39
ZFIN|ZDB-GENE-030131-4009577 gspt1l "G1 to S phase transiti 0.767 0.171 0.777 7e-38
UNIPROTKB|E1BYG8627 GSPT1 "Uncharacterized protein 0.767 0.157 0.787 7.3e-38
UNIPROTKB|F1NBR4643 GSPT1 "Uncharacterized protein 0.767 0.153 0.787 8.9e-38
UNIPROTKB|E2R0S8522 GSPT1 "Uncharacterized protein 0.767 0.189 0.777 8.9e-38
UNIPROTKB|P15170499 GSPT1 "Eukaryotic peptide chai 0.767 0.198 0.777 8.9e-38
UNIPROTKB|I3LNK5523 GSPT1 "Uncharacterized protein 0.767 0.189 0.777 8.9e-38
UNIPROTKB|Q9N2G7588 Q9N2G7 "Eukaryotic polypeptide 0.767 0.168 0.777 1e-37
UNIPROTKB|F6Q087605 GSPT1 "Uncharacterized protein 0.767 0.163 0.777 1.5e-37
FB|FBgn0020443 Elf "Ef1alpha-like factor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/100 (86%), Positives = 96/100 (96%)

Query:    30 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
             +VILEHKSIICAGYSAVMHIHC AEEV VKALICL+DKK+G+KSKTRPRFVKQDQ+AIMR
Sbjct:   520 VVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVDKKSGDKSKTRPRFVKQDQVAIMR 579

Query:    90 LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
             +E +G+ICL+QFKLFPQMGRFTLRDE KTIAIGKVLK+VE
Sbjct:   580 IECSGMICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVVE 619
GO:0003747 "translation release factor activity" evidence=ISS;NAS
GO:0006415 "translational termination" evidence=ISS;IMP;NAS
GO:0005829 "cytosol" evidence=ISS;NAS
GO:0008079 "translation termination factor activity" evidence=ISS
GO:0005525 "GTP binding" evidence=IEA;ISS
GO:0003924 "GTPase activity" evidence=IEA;NAS
ZFIN|ZDB-GENE-040822-36 gspt1 "G1 to S phase transition 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4009 gspt1l "G1 to S phase transition 1, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYG8 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBR4 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0S8 GSPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P15170 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LNK5 GSPT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N2G7 Q9N2G7 "Eukaryotic polypeptide chain release factor 3" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|F6Q087 GSPT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8R050ERF3A_MOUSENo assigned EC number0.77770.76740.1556yesN/A
Q5R4B3ERF3B_PONABNo assigned EC number0.75240.78290.1608yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
cd03704108 cd03704, eRF3c_III, This family represents eEF1alp 1e-53
COG5256428 COG5256, TEF1, Translation elongation factor EF-1a 4e-27
cd04093107 cd04093, HBS1_C, HBS1_C: this family represents th 3e-23
PRK12317425 PRK12317, PRK12317, elongation factor 1-alpha; Rev 4e-22
cd03705104 cd03705, EF1_alpha_III, Domain III of EF-1 4e-21
TIGR00483426 TIGR00483, EF-1_alpha, translation elongation fact 5e-17
pfam0314391 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-ter 2e-16
cd01513102 cd01513, Translation_factor_III, Domain III of Elo 7e-16
PTZ00141446 PTZ00141, PTZ00141, elongation factor 1- alpha; Pr 5e-13
PLN00043447 PLN00043, PLN00043, elongation factor 1-alpha; Pro 3e-11
cd0370887 cd03708, GTPBP_III, Domain III of the GP-1 family 2e-06
COG5258527 COG5258, GTPBP1, GTPase [General function predicti 7e-04
>gnl|CDD|239675 cd03704, eRF3c_III, This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu Back     alignment and domain information 
 Score =  163 bits (414), Expect = 1e-53
 Identities = 70/99 (70%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 30  IVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 88
           I ILE K SII AGYSAV+HIH   EEV +K LI LIDKKTG+KSK RPRFVK     I 
Sbjct: 10  IAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIA 69

Query: 89  RLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKI 127
           RLE  G ICL++F+ FPQ+GRFTLRDEGKTIAIGKVLK+
Sbjct: 70  RLETTGPICLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108

eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. Length = 108
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|239760 cd04093, HBS1_C, HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha Back     alignment and domain information
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed Back     alignment and domain information
>gnl|CDD|239676 cd03705, EF1_alpha_III, Domain III of EF-1 Back     alignment and domain information
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha Back     alignment and domain information
>gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain Back     alignment and domain information
>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G Back     alignment and domain information
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional Back     alignment and domain information
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional Back     alignment and domain information
>gnl|CDD|239679 cd03708, GTPBP_III, Domain III of the GP-1 family of GTPase Back     alignment and domain information
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
cd03704108 eRF3c_III This family represents eEF1alpha-like C- 100.0
cd04093107 HBS1_C HBS1_C: this family represents the C-termin 100.0
cd03705104 EF1_alpha_III Domain III of EF-1. Eukaryotic elong 100.0
cd04095103 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily repres 99.97
PLN00043447 elongation factor 1-alpha; Provisional 99.97
PF0314399 GTP_EFTU_D3: Elongation factor Tu C-terminal domai 99.97
cd01513102 Translation_factor_III Domain III of Elongation fa 99.96
COG5256428 TEF1 Translation elongation factor EF-1alpha (GTPa 99.96
PRK12317425 elongation factor 1-alpha; Reviewed 99.96
TIGR00483426 EF-1_alpha translation elongation factor EF-1 alph 99.95
PTZ00141446 elongation factor 1- alpha; Provisional 99.95
KOG0459|consensus501 99.93
PRK05124474 cysN sulfate adenylyltransferase subunit 1; Provis 99.91
TIGR02034406 CysN sulfate adenylyltransferase, large subunit. H 99.9
PRK05506 632 bifunctional sulfate adenylyltransferase subunit 1 99.89
cd0370887 GTPBP_III Domain III of the GP-1 family of GTPase. 99.89
KOG0052|consensus391 99.87
COG2895431 CysN GTPases - Sulfate adenylate transferase subun 99.87
cd0370693 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF 99.87
cd0370790 EFTU_III Domain III of elongation factor (EF) Tu. 99.85
PLN03126478 Elongation factor Tu; Provisional 99.82
CHL00071409 tufA elongation factor Tu 99.8
KOG0458|consensus603 99.8
PRK12735396 elongation factor Tu; Reviewed 99.78
PLN03127447 Elongation factor Tu; Provisional 99.78
PRK00049396 elongation factor Tu; Reviewed 99.78
TIGR00485394 EF-Tu translation elongation factor TU. This align 99.77
PRK12736394 elongation factor Tu; Reviewed 99.77
KOG0460|consensus449 99.59
COG0050394 TufB GTPases - translation elongation factors [Tra 99.56
cd0409497 selB_III This family represents the domain of elon 99.48
COG5258527 GTPBP1 GTPase [General function prediction only] 99.38
KOG0463|consensus641 99.29
KOG1143|consensus591 99.15
PRK04000411 translation initiation factor IF-2 subunit gamma; 99.15
PTZ00327460 eukaryotic translation initiation factor 2 gamma s 99.14
TIGR03680406 eif2g_arch translation initiation factor 2 subunit 98.99
PRK10512 614 selenocysteinyl-tRNA-specific translation factor; 98.58
TIGR00475 581 selB selenocysteine-specific elongation factor Sel 98.1
PF0917388 eIF2_C: Initiation factor eIF2 gamma, C terminal; 95.35
COG3276447 SelB Selenocysteine-specific translation elongatio 92.9
COG5257415 GCD11 Translation initiation factor 2, gamma subun 88.21
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu Back     alignment and domain information 
Probab=100.00  E-value=2e-34  Score=195.47  Aligned_cols=106  Identities=66%  Similarity=0.968  Sum_probs=101.2

Q ss_pred             eeccEEEEEEecCCc-cccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeeecc
Q psy10356         22 IYGPSVIYIVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ  100 (129)
Q Consensus        22 ~~~~f~A~v~~l~~~-~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~ve~  100 (129)
                      .+++|+|+|+||+++ .+|.+||++++|+|+.+++|+|.+|.+++|+++|+..+++|++|++||.|+|+|++++|+|+|+
T Consensus         2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~   81 (108)
T cd03704           2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK   81 (108)
T ss_pred             cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence            468999999999998 8999999999999999999999999999999988776789999999999999999999999999


Q ss_pred             cccCCcceEEEEEeCCCeEEEEEEEEe
Q psy10356        101 FKLFPQMGRFTLRDEGKTIAIGKVLKI  127 (129)
Q Consensus       101 ~~~~~~lGrfiLrd~g~Tva~G~V~~v  127 (129)
                      |++++.||||+|||+|+|+|+|+|+++
T Consensus        82 ~~~~~~lGRf~lR~~g~Tva~G~V~~~  108 (108)
T cd03704          82 FEDFPQLGRFTLRDEGKTIAIGKVLKL  108 (108)
T ss_pred             cccCCCcccEEEEeCCCEEEEEEEEEC
Confidence            999999999999999999999999874

eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha Back     alignment and domain information
>cd03705 EF1_alpha_III Domain III of EF-1 Back     alignment and domain information
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu Back     alignment and domain information
>PLN00043 elongation factor 1-alpha; Provisional Back     alignment and domain information
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G Back     alignment and domain information
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12317 elongation factor 1-alpha; Reviewed Back     alignment and domain information
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha Back     alignment and domain information
>PTZ00141 elongation factor 1- alpha; Provisional Back     alignment and domain information
>KOG0459|consensus Back     alignment and domain information
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional Back     alignment and domain information
>TIGR02034 CysN sulfate adenylyltransferase, large subunit Back     alignment and domain information
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional Back     alignment and domain information
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase Back     alignment and domain information
>KOG0052|consensus Back     alignment and domain information
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU) Back     alignment and domain information
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu Back     alignment and domain information
>PLN03126 Elongation factor Tu; Provisional Back     alignment and domain information
>CHL00071 tufA elongation factor Tu Back     alignment and domain information
>KOG0458|consensus Back     alignment and domain information
>PRK12735 elongation factor Tu; Reviewed Back     alignment and domain information
>PLN03127 Elongation factor Tu; Provisional Back     alignment and domain information
>PRK00049 elongation factor Tu; Reviewed Back     alignment and domain information
>TIGR00485 EF-Tu translation elongation factor TU Back     alignment and domain information
>PRK12736 elongation factor Tu; Reviewed Back     alignment and domain information
>KOG0460|consensus Back     alignment and domain information
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu Back     alignment and domain information
>COG5258 GTPBP1 GTPase [General function prediction only] Back     alignment and domain information
>KOG0463|consensus Back     alignment and domain information
>KOG1143|consensus Back     alignment and domain information
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional Back     alignment and domain information
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology Back     alignment and domain information
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
3e1y_E204 Crystal Structure Of Human Erf1ERF3 COMPLEX Length 5e-41
3j2k_7439 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 2e-40
1r5b_A467 Crystal Structure Analysis Of Sup35 Length = 467 6e-20
3e20_A201 Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt 8e-20
1jny_A435 Crystal Structure Of Sulfolobus Solfataricus Elonga 1e-16
3agj_A437 Crystal Structure Of Archaeal Pelota And Gtp-bound 1e-13
3vmf_A440 Archaeal Protein Length = 440 1e-13
1f60_A458 Crystal Structure Of The Yeast Elongation Factor Co 3e-12
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 204 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/99 (77%), Positives = 86/99 (86%)
Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           IVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I R
Sbjct: 102 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIAR 161
Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIV 128
           L  AG ICL+ FK FPQMGRFTLRDEGKTIAIGKVLK+V
Sbjct: 162 LRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 200
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 Back     alignment and structure
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 Back     alignment and structure
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 201 Back     alignment and structure
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 Back     alignment and structure
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 Back     alignment and structure
>pdb|3VMF|A Chain A, Archaeal Protein Length = 440 Back     alignment and structure
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 7e-46
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 5e-40
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 1e-39
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 5e-39
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 8e-38
1f60_A458 Elongation factor EEF1A; protein-protein complex, 3e-36
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 1e-30
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Length = 204 Back     alignment and structure
 Score =  146 bits (371), Expect = 7e-46
 Identities = 77/100 (77%), Positives = 86/100 (86%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           IVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I R
Sbjct: 102 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIAR 161

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
           L  AG ICL+ FK FPQMGRFTLRDEGKTIAIGKVLK+V 
Sbjct: 162 LRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP 201
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 99.98
3j2k_7439 ERF3, eukaryotic polypeptide chain release factor 99.97
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 99.95
1f60_A458 Elongation factor EEF1A; protein-protein complex, 99.95
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 99.94
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 99.94
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 99.93
1zun_B434 Sulfate adenylate transferase, subunit 1/adenylyls 99.9
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 99.88
2c78_A405 Elongation factor TU-A; hydrolase, GTPase, transla 99.77
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 99.73
1wb1_A482 Translation elongation factor SELB; selenocysteine 99.72
2elf_A370 Protein translation elongation factor 1A; tRNA, py 99.64
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 99.57
1s0u_A408 EIF-2-gamma, translation initiation factor 2 gamma 99.38
1kk1_A410 EIF2gamma; initiation of translation; HET: GNP; 1. 99.37
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 99.11
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Back     alignment and structure
Probab=99.98  E-value=1.7e-32  Score=203.57  Aligned_cols=121  Identities=64%  Similarity=0.935  Sum_probs=110.7

Q ss_pred             eeEEcCCCcCccccceeeccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCE
Q psy10356          6 HATVKGEGMLWQEQRVIYGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI   85 (129)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~   85 (129)
                      +|.|-+++.+   +|..+++|+|+|+||+++.+|.+||+|++|+||.+++|+|.+|.+++|++||++.+.+|++|++||.
T Consensus        81 rG~vl~~~~~---~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~  157 (204)
T 3e1y_E           81 PGFILCDPNN---LCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQV  157 (204)
T ss_dssp             TTCEEBCSSS---CCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCE
T ss_pred             cceEEECCCC---CCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCE
Confidence            3444444443   3688999999999999988999999999999999999999999999999999887888999999999


Q ss_pred             EEEEEEECceeeecccccCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356         86 AIMRLEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE  129 (129)
Q Consensus        86 a~v~l~~~~pi~ve~~~~~~~lGrfiLrd~g~Tva~G~V~~v~~  129 (129)
                      |.|+|++++|+|+|+|++|+.+|||+|||+|+|+|+|+|+++.+
T Consensus       158 a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~  201 (204)
T 3e1y_E          158 CIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP  201 (204)
T ss_dssp             EEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC
T ss_pred             EEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEec
Confidence            99999999999999999999999999999999999999999864
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Back     alignment and structure
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 129
d1f60a2107 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, 2e-32
d1jnya2107 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, 9e-27
d1r5ba268 b.44.1.1 (A:555-622) Eukaryotic peptide chain rele 8e-17
d1zunb2105 b.44.1.1 (B:330-434) Sulfate adenylate transferase 3e-13
d2c78a293 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) 0.004
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (270), Expect = 2e-32
 Identities = 28/100 (28%), Positives = 56/100 (56%)

Query: 30  IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 89
           +++L H   I AGYS V+  H          L+   D+++G+K +  P+F+K    A+++
Sbjct: 8   VIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVK 67

Query: 90  LEAAGVICLDQFKLFPQMGRFTLRDEGKTIAIGKVLKIVE 129
              +  +C++ F  +P +GRF +RD  +T+A+G +  + +
Sbjct: 68  FVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 107
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 107 Back     information, alignment and structure
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 68 Back     information, alignment and structure
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 105 Back     information, alignment and structure
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} Length = 93 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1f60a2107 Elongation factor eEF-1alpha, C-terminal domain {B 100.0
d1jnya2107 Elongation factor eEF-1alpha, C-terminal domain {A 100.0
d1zunb2105 Sulfate adenylate transferase subunit cysN/C, EF-T 99.97
d1d2ea2103 Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mi 99.9
d2c78a293 Elongation factor Tu (EF-Tu) {Thermus thermophilus 99.88
d1r5ba268 Eukaryotic peptide chain release factor ERF2, C-te 99.75
d1kk1a289 Initiation factor eIF2 gamma subunit {Archaeon Pyr 95.98
d1s0ua290 Initiation factor eIF2 gamma subunit {Archaeon Met 95.45
d2qn6a295 Initiation factor eIF2 gamma subunit {Sulfolobus s 95.32
d1wb1a3116 Elongation factor SelB, domain 3 {Methanococcus ma 94.38
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-38  Score=212.06  Aligned_cols=107  Identities=26%  Similarity=0.560  Sum_probs=104.0

Q ss_pred             eccEEEEEEecCCccccccCceEEEEEeeeeEeEEEEEeEEeeccCcCccccCCCceeeCCCEEEEEEEECceeeecccc
Q psy10356         23 YGPSVIYIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  102 (129)
Q Consensus        23 ~~~f~A~v~~l~~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~tg~~~~~~p~~l~~gd~a~v~l~~~~pi~ve~~~  102 (129)
                      +.+|+|||++|+||.+|.+||++++|+||.+++|+|.+|.+++|++||+..+++|+++++||.|.|+|++++|+|+|.|+
T Consensus         1 c~sF~A~v~vl~hp~~I~~Gy~~v~h~ht~~~~~~i~kl~~~~d~~tg~~~~~~P~~l~~g~~a~v~i~~~~pi~vE~~~   80 (107)
T d1f60a2           1 CASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFS   80 (107)
T ss_dssp             CSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTT
T ss_pred             CCcEEEEEEEECCCCcccCCceEEEEecceeeeeEHhhhhhhhcccCCCEeccCCcccCCCCEEEEEEEeCCCCEEeecc
Confidence            46899999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCcceEEEEEeCCCeEEEEEEEEeeC
Q psy10356        103 LFPQMGRFTLRDEGKTIAIGKVLKIVE  129 (129)
Q Consensus       103 ~~~~lGrfiLrd~g~Tva~G~V~~v~~  129 (129)
                      ++|.||||+|||+|+|||+|+|++|.+
T Consensus        81 ~~p~LGRf~lRd~g~TVAiG~V~~V~k  107 (107)
T d1f60a2          81 EYPPLGRFAVRDMRQTVAVGVIKSVDK  107 (107)
T ss_dssp             TCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCceeEEEEECCCEEEEEEEEEecC
Confidence            999999999999999999999999864
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure