Psyllid ID: psy10357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccccHHHHHcccccccccccccEEEEEEEEEcccEEEEEEEEEEEEEccccEEEEccccccEEEEEEEcccEEcccccccccEEEEEcccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEccEEHHHHHHHHHHcccccccccccccccccccEEEEEEEEccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccHHHHHHHHHccccccccccccccccHccccccccccccEEEcEEEcccEEEEEcccccEEEEEEEHHHHHHHHHccccccccEEEEEEEHHEcccccEccccccccHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccHcccccEEccccEEEEEEccccccEEcccccccccccEEEEcc
Coil and Loop (DISEMBL)
MRESVKYAVSFWQPKLWTVRQEILLIispsgqmgqnlkepvgpeictwwkggafipfidalpslnrkmdgpflmPVVEKFKDMGTVVMGkvesgeakkgqslvlmpnrtpvivdqlwsddeevssvgpgenikvklkgieeddvspgfvlcdpnnpartarvFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIdkktgeksktrprfvkQDQIAIMRLEAAGVicldqfklfpqmgrftlrde
Flexible Loop (DISEMBL)
MRESVKYAVsfwqpklwTVRQEILLIIspsgqmgqnlKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVesgeakkgqslvlmpnRTPVIVDQLWsddeevssvgpgenikVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIdkktgeksktrprfvkqdqIAIMRLEAAGVicldqfklfpqmgrftlrde
Low Complexity Region (SEG)
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE
Disordered region (IsUnstruct)
****VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKV**********LVLMPNRTPVIVDQLWS*************IKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKT********RFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRF*****
Disordered Region (DISOPRED)
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID**************KQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD*
Disordered Region (DISEMBL)
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE
Disordered Region (DISPRO)
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
P15170	499	Eukaryotic peptide chain	no	N/A	0.876	0.442	0.632	6e-81
Q8R050	636	Eukaryotic peptide chain	yes	N/A	0.876	0.347	0.632	4e-80
Q8IYD1	628	Eukaryotic peptide chain	no	N/A	0.876	0.351	0.614	8e-79
Q5R4B3	628	Eukaryotic peptide chain	yes	N/A	0.876	0.351	0.614	1e-78
Q149F3	632	Eukaryotic peptide chain	no	N/A	0.876	0.349	0.609	3e-78
Q9HGI7	712	Eukaryotic peptide chain	N/A	N/A	0.884	0.313	0.459	1e-56
O13354	715	Eukaryotic peptide chain	N/A	N/A	0.884	0.311	0.450	6e-56
P05453	685	Eukaryotic peptide chain	yes	N/A	0.884	0.325	0.446	8e-56
Q9HGI4	662	Eukaryotic peptide chain	no	N/A	0.980	0.373	0.401	3e-54
P23637	741	Eukaryotic peptide chain	N/A	N/A	0.908	0.309	0.421	3e-52

>sp|P15170|ERF3A_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1

 Score =  300 bits (769), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 173/223 (77%), Gaps = 2/223 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 262 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 319

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E  +V PGEN+K++LKGIEE+++ PGF+
Sbjct: 320 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFI 379

Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct: 380 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 439

Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 440 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 482

Involved in translation termination in response to the termination codons UAA, UAG and UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.
Homo sapiens (taxid: 9606)

>sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=2

 Score =  297 bits (761), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 172/223 (77%), Gaps = 2/223 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 399 SGLTGANLKEQS--DFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 456

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct: 457 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 516

Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LCD NN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct: 517 LCDLNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 576

Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 577 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 619

Involved in translation termination in response to the termination codons UAA, UAG and UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Mus musculus (taxid: 10090)

>sp|Q8IYD1|ERF3B_HUMAN Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2

 Score =  293 bits (750), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 170/223 (76%), Gaps = 2/223 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G N+KE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 391 SGLTGANIKEQ--SDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYKDMGTVVLG 448

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E   V PGEN+K++LKGIEE+++ PGF+
Sbjct: 449 KLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508

Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LCDP+N   + R FD QIVI+EHKSIIC GY+AV+HIH   EEV + ALI L+DKK+GEK
Sbjct: 509 LCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEK 568

Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 569 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 611

Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Homo sapiens (taxid: 9606)

>sp|Q5R4B3|ERF3B_PONAB Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 170/223 (76%), Gaps = 2/223 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G N+KE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 391 SGLTGANVKEQ--SDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYKDMGTVVLG 448

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E   V PGEN+K++LKGIEE+++ PGF+
Sbjct: 449 KLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508

Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LCDP+N   + R FD QIVI+EHKSIIC GY+AV+HIH   EEV + ALI L+DKK+GEK
Sbjct: 509 LCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEK 568

Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 569 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 611

Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Pongo abelii (taxid: 9601)

>sp|Q149F3|ERF3B_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1

 Score =  291 bits (744), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 171/223 (76%), Gaps = 2/223 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G N+KE    + C W+ G  FIP++D+LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 395 SGLTGANIKEQS--DFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLG 452

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E   V PGEN+K++LKGIEE+++ PGF+
Sbjct: 453 KLESGSIFKGQQLVMMPNKHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFI 512

Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LC+P+N   + R FD QIVI+EHKSIIC GY+AV+HIH   EEV + ALI L+DKK+GEK
Sbjct: 513 LCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEK 572

Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 573 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 615

Involved in translation termination in response to the termination codons UAA, UAG and UGA. May play a role as a potent stimulator of the release factor activity of ETF1. Exhibits GTPase activity, which is ribosome- and ETF1-dependent. May play a role in cell cycle progression. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Mus musculus (taxid: 10090)

>sp|Q9HGI7|ERF3_CANMA Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 151/224 (67%), Gaps = 1/224 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G  LK+ V P+ C W++G + + ++D + ++NRK++GPF+MPV  K KD+GTVV G
Sbjct: 476 SGYTGAGLKDRVNPKDCPWYEGPSLLEYLDNMDTMNRKINGPFMMPVSGKMKDLGTVVEG 535

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE-EVSSVGPGENIKVKLKGIEEDDVSPGF 148
           K+ESG  KKG +L+LMPN+TPV V  ++++ E E  +   GE +++K+KG+EE+D+ PG+
Sbjct: 536 KIESGHVKKGTNLILMPNKTPVEVLTIYNETEQEADTAFSGEQVRLKIKGVEEEDLQPGY 595

Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
           VL  P NP +T   F+AQI I+E KSI+  G+S VMH+H   EEV    L   ++K T  
Sbjct: 596 VLTSPKNPVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNR 655

Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KSK  P F K+    I  LE +  +C + +K +PQ+GRFTLRD+
Sbjct: 656 KSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQ 699

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Candida maltosa (taxid: 5479)

>sp|O13354|ERF3_CANAX Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 150/224 (66%), Gaps = 1/224 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G  LK+ V P+ C W+ G + + ++D + ++NRK++GPF+MPV  K KD+GT+V G
Sbjct: 479 SGYTGAGLKDRVDPKDCPWYDGPSLLEYLDNMDTMNRKINGPFMMPVSGKMKDLGTIVEG 538

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE-EVSSVGPGENIKVKLKGIEEDDVSPGF 148
           K+ESG  KKG +L++MPN+TP+ V  ++++ E E  +   GE +++K+KGIEE+D+ PG+
Sbjct: 539 KIESGHVKKGTNLIMMPNKTPIEVLTIFNETEQECDTAFSGEQVRLKIKGIEEEDLQPGY 598

Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
           VL  P NP +T   F+AQI I+E KSI+  G+S VMH+H   EEV    L   ++K T  
Sbjct: 599 VLTSPKNPVKTVTRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNR 658

Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KSK  P F K+    I  LE   ++C + +K +PQ+GRFTLRD+
Sbjct: 659 KSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQ 702

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Candida albicans (taxid: 5476)

>sp|P05453|ERF3_YEAST Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUP35 PE=1 SV=1

 Score =  217 bits (552), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 150/224 (66%), Gaps = 1/224 (0%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G NLK+ V P+ C W+ G   + ++D +  ++R ++ PF++P+  K KD+GT+V G
Sbjct: 448 SGYSGANLKDHVDPKECPWYTGPTLLEYLDTMNHVDRHINAPFMLPIAAKMKDLGTIVEG 507

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE-EVSSVGPGENIKVKLKGIEEDDVSPGF 148
           K+ESG  KKGQS +LMPN+T V +  ++++ E EV     GE +K+++KG+EE+D+SPGF
Sbjct: 508 KIESGHIKKGQSTLLMPNKTAVEIQNIYNETENEVDMAMCGEQVKLRIKGVEEEDISPGF 567

Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
           VL  P NP ++   F AQI I+E KSII AG+S VMH+H   EEV++  L+  ++K T  
Sbjct: 568 VLTSPKNPIKSVTKFVAQIAIVELKSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNR 627

Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KSK  P F K+    I  LE    +C++ ++ +PQ+GRFTLRD+
Sbjct: 628 KSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQ 671

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides. Recruited by polyadenylate-binding protein PAB1 to poly(A)-tails of mRNAs. Interaction with PAB1 is also required for regulation of normal mRNA decay through translation termination-coupled poly(A) shortening.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9HGI4|ERF3_ZYGRO Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 159/249 (63%), Gaps = 2/249 (0%)

Query: 5   VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL 64
           VK   +F +   + V++E++ +   SG  G  L   V P+ C W+ G A + ++D +  +
Sbjct: 401 VKNLSNFLKAIGYNVKEEVVFM-PVSGYSGAGLGTRVDPKECPWYDGPALLEYMDNMSHV 459

Query: 65  NRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE-EV 123
           +RKM+ PF++P+  K +DMGT+V GK+ESG  +KG S +LMPN+ PV +  ++++ E EV
Sbjct: 460 DRKMNAPFMLPIAAKMRDMGTIVEGKIESGHIRKGHSTLLMPNKIPVEIQNIYNETENEV 519

Query: 124 SSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAV 183
                GE +K+K+KG+EE+D++PGFVL  P NP +    F AQ+ I+E KSI+ +G+S V
Sbjct: 520 DMAICGEQVKLKIKGVEEEDIAPGFVLTSPKNPVKNVTRFVAQVAIVELKSILSSGFSCV 579

Query: 184 MHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQ 243
           MH+H   EEV +  L+  +++ T  KSK  P F K+    I  LE    +C++ ++ +PQ
Sbjct: 580 MHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQ 639

Query: 244 MGRFTLRDE 252
           +GRFTLRD+
Sbjct: 640 LGRFTLRDQ 648

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Zygosaccharomyces rouxii (taxid: 4956)

>sp|P23637|ERF3_OGAPI Eukaryotic peptide chain release factor GTP-binding subunit OS=Ogataea pini GN=SUP2 PE=3 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 1/230 (0%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           +L +  SG  G  LKE V  +   W+ G + + ++D++P   RK++ PF++P+  K KD+
Sbjct: 499 VLFMPVSGYTGAGLKERVSQKDAPWYNGPSLLEYLDSMPLAVRKINDPFMLPISSKMKDL 558

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE-EVSSVGPGENIKVKLKGIEED 142
           GTV+ GK+ESG  KKGQ+L++MPN+T V V  ++++ E E  S   GE ++++L+GIEE+
Sbjct: 559 GTVIEGKIESGHVKKGQNLLVMPNKTQVEVTTIYNETEAEADSAFCGEQVRLRLRGIEEE 618

Query: 143 DVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLI 202
           D+S G+VL   N+P +T   F+AQI I+E KSI+  G+S VMH+H   EEV    L+  +
Sbjct: 619 DLSAGYVLSSINHPVKTVTRFEAQIAIVELKSILSTGFSCVMHVHTAIEEVTFTQLLHNL 678

Query: 203 DKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
            K T  +SK  P F KQ    I  LE    +C++ +  +PQ+GRFTLRD+
Sbjct: 679 QKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQ 728

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Ogataea pini (taxid: 4923)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
242009574	575	eukaryotic peptide chain release factor	0.908	0.398	0.807	1e-108
307196745	611	Eukaryotic peptide chain release factor	0.908	0.374	0.781	1e-106
380015643	598	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.908	0.382	0.781	1e-106
48142864	598	PREDICTED: eukaryotic peptide chain rele	0.908	0.382	0.781	1e-106
350414918	598	PREDICTED: eukaryotic peptide chain rele	0.908	0.382	0.781	1e-106
340720537	596	PREDICTED: eukaryotic peptide chain rele	0.908	0.384	0.781	1e-106
307186254	606	Eukaryotic peptide chain release factor	0.908	0.377	0.777	1e-105
332029630	621	Eukaryotic peptide chain release factor	0.908	0.368	0.777	1e-105
345485415	652	PREDICTED: eukaryotic peptide chain rele	0.908	0.351	0.777	1e-105
383860550	598	PREDICTED: eukaryotic peptide chain rele	0.908	0.382	0.777	1e-105

>gi|242009574|ref|XP_002425558.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis] gi|212509437|gb|EEB12820.1| eukaryotic peptide chain release factor GTP-binding subunit, putative [Pediculus humanus corporis]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/229 (80%), Positives = 208/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SG  G  LKE +    C W++G AFIPFID LPSLNRKMDGPF+MPVV+K+KDM
Sbjct: 333 LTFMPCSGLTGLGLKERLDESFCPWYQGEAFIPFIDNLPSLNRKMDGPFIMPVVDKYKDM 392

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL+LMPNRTPVIVDQLWSDD+EV++VGPGEN+KVKLKGIEE+D
Sbjct: 393 GTVVMGKVEAGEAKKGQSLLLMPNRTPVIVDQLWSDDDEVTAVGPGENVKVKLKGIEEED 452

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD +NP +T RVFDAQ+VILEHKSIICAGYSAVMHIHCVAEEV VKALICL+D
Sbjct: 453 VSPGFVLCDSSNPTKTGRVFDAQVVILEHKSIICAGYSAVMHIHCVAEEVTVKALICLVD 512

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVIC++QFKLFPQMGRFTLRDE
Sbjct: 513 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICMEQFKLFPQMGRFTLRDE 561

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196745|gb|EFN78204.1| Eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Harpegnathos saltator]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +C W+ G  FIPFID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 369 LTFMPVSGQLGIGLKDPIPEHLCNWYSGPPFIPFIDSLPSLNRKSNGPFIMPIVDKYKDM 428

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 429 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 488

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 489 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVD 548

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 549 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 597

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015643|ref|XP_003691809.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Apis florea]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +CTW+ G  FI FID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 356 LTFMPVSGQLGYGLKDPIPEHLCTWYTGPPFISFIDSLPSLNRKNNGPFIMPIVDKYKDM 415

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 416 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 475

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 476 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVRVKALICLVD 535

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 536 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 584

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48142864|ref|XP_397380.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B [Apis mellifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +CTW+ G  FI FID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 356 LTFMPVSGQLGYGLKDPIPEHLCTWYTGPPFISFIDSLPSLNRKNNGPFIMPIVDKYKDM 415

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 416 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 475

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 476 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVRVKALICLVD 535

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 536 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 584

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414918|ref|XP_003490469.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Bombus impatiens]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +CTW+ G  FI FID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 356 LTFMPVSGQLGYGLKDPIPEHLCTWYTGPPFISFIDSLPSLNRKNNGPFIMPIVDKYKDM 415

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 416 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 475

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 476 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVRVKALICLVD 535

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 536 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 584

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720537|ref|XP_003398691.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Bombus terrestris]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +CTW+ G  FI FID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 354 LTFMPVSGQLGYGLKDPIPEHLCTWYTGPPFISFIDSLPSLNRKNNGPFIMPIVDKYKDM 413

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 414 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 473

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 474 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVRVKALICLVD 533

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 534 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 582

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186254|gb|EFN71917.1| Eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Camponotus floridanus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 206/229 (89%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +C W+ G  FIPFID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 364 LTFMPVSGQLGIGLKDPIPEHLCNWYSGPPFIPFIDSLPSLNRKSNGPFIMPIVDKYKDM 423

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 424 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 483

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 484 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVD 543

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLF QMGRFTLRDE
Sbjct: 544 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFQQMGRFTLRDE 592

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029630|gb|EGI69519.1| Eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Acromyrmex echinatior]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 206/229 (89%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +C W+ G  FIPFID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 379 LTFMPVSGQLGIGLKDPIPEHLCNWYSGPPFIPFIDSLPSLNRKSNGPFIMPIVDKYKDM 438

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKGQSL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 439 GTVVMGKVEAGEAKKGQSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 498

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 499 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVD 558

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLF QMGRFTLRDE
Sbjct: 559 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFQQMGRFTLRDE 607

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485415|ref|XP_001605609.2| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform 1 [Nasonia vitripennis]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 207/229 (90%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+ +  E+C+W+KG  FIPFID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 410 LTFMPVSGQLGIGLKDSIPEELCSWYKGPPFIPFIDSLPSLNRKSNGPFIMPIVDKYKDM 469

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKG SL++MPNRT V+VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 470 GTVVMGKVEAGEAKKGHSLLVMPNRTAVVVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 529

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD N P +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VK LICL+D
Sbjct: 530 VSPGFVLCDSNIPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKTLICLVD 589

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTGEKSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 590 KKTGEKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 638

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860550|ref|XP_003705752.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like [Megachile rotundata]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 206/229 (89%)

Query: 24  LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDM 83
           L  +  SGQ+G  LK+P+   +CTW+ G  FI FID+LPSLNRK +GPF+MP+V+K+KDM
Sbjct: 356 LTFMPVSGQLGIGLKDPIPEHLCTWYTGPPFISFIDSLPSLNRKNNGPFIMPIVDKYKDM 415

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
           GTVVMGKVE+GEAKKG SL++MPNRT V VDQLWSDDEEV+SVGPGEN+K+KLKGIEE+D
Sbjct: 416 GTVVMGKVEAGEAKKGHSLLVMPNRTAVTVDQLWSDDEEVTSVGPGENVKIKLKGIEEED 475

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           VSPGFVLCD NNP +T +VFDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+D
Sbjct: 476 VSPGFVLCDSNNPIKTGKVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVRVKALICLVD 535

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KKTG+KSKTRPRFVKQDQ+AIMR+E AGVICL++FKLFPQMGRFTLRDE
Sbjct: 536 KKTGDKSKTRPRFVKQDQVAIMRIECAGVICLERFKLFPQMGRFTLRDE 584

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0020443	619	Elf "Ef1alpha-like factor" [Dr	0.884	0.360	0.762	7.8e-94
UNIPROTKB|E1BYG8	627	GSPT1 "Uncharacterized protein	0.876	0.352	0.645	3.9e-76
UNIPROTKB|F1NBR4	643	GSPT1 "Uncharacterized protein	0.876	0.343	0.645	3.9e-76
UNIPROTKB|E2R0S8	522	GSPT1 "Uncharacterized protein	0.876	0.423	0.636	8.1e-76
UNIPROTKB|F1PM36	528	GSPT1 "Uncharacterized protein	0.876	0.418	0.636	8.1e-76
UNIPROTKB|F6Q087	605	GSPT1 "Uncharacterized protein	0.876	0.365	0.636	1.3e-75
UNIPROTKB|I3LNK5	523	GSPT1 "Uncharacterized protein	0.876	0.422	0.636	1.3e-75
UNIPROTKB|Q91855	614	SUP35 "SUP35 protein" [Xenopus	0.876	0.359	0.632	1.7e-75
UNIPROTKB|J3KQG6	637	GSPT1 "Eukaryotic peptide chai	0.876	0.346	0.632	2.7e-75
UNIPROTKB|P15170	499	GSPT1 "Eukaryotic peptide chai	0.876	0.442	0.632	2.7e-75

FB|FBgn0020443 Elf "Ef1alpha-like factor" [Drosophila melanogaster (taxid:7227)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 170/223 (76%), Positives = 200/223 (89%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G  LK+ +   +C W++G AFIPFID LPSLNRK DGPF+MP+V+K+KDMGTVVMG
Sbjct:   383 SGLSGTGLKDQIPETLCPWYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMG 442

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             KVESG A+KGQ+L++MPNRT V VDQL+SDD EV+SVGPGEN+K+KLKGIEE+DVSPGFV
Sbjct:   443 KVESGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFV 502

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCD  NP +T ++FDAQ+VILEHKSIICAGYSAVMHIHC AEEV VKALICL+DKK+G+K
Sbjct:   503 LCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVDKKSGDK 562

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+AIMR+E +G+ICL+QFKLFPQMGRFTLRDE
Sbjct:   563 SKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRFTLRDE 605

GO:0003747 "translation release factor activity" evidence=ISS;NAS

GO:0006415 "translational termination" evidence=ISS;IMP;NAS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0008079 "translation termination factor activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0003924 "GTPase activity" evidence=IEA;NAS

UNIPROTKB|E1BYG8 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/223 (64%), Positives = 172/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    E C W+ G  FIP++D LP+ NR  DGP  +P+V+K+KDMGTVV+G
Sbjct:   390 SGLTGANLKEQ--SEFCPWYIGLPFIPYLDNLPNFNRSADGPIRLPIVDKYKDMGTVVLG 447

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   448 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 507

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKKTGEK
Sbjct:   508 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKTGEK 567

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   568 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 610

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1NBR4 GSPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/223 (64%), Positives = 172/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    E C W+ G  FIP++D LP+ NR  DGP  +P+V+K+KDMGTVV+G
Sbjct:   406 SGLTGANLKEQ--SEFCPWYIGLPFIPYLDNLPNFNRSADGPIRLPIVDKYKDMGTVVLG 463

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   464 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 523

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKKTGEK
Sbjct:   524 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKTGEK 583

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   584 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 626

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2R0S8 GSPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 142/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   285 SGLTGANLKEQ--SDFCPWYTGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 342

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   343 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 402

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   403 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 462

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   463 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 505

GO:0006479 "protein methylation" evidence=IEA

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1PM36 GSPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 142/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   262 SGLTGANLKEQ--SDFCPWYTGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 319

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   320 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 379

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   380 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 439

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   440 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 482

GO:0006479 "protein methylation" evidence=IEA

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F6Q087 GSPT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 142/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   368 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 425

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   426 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 485

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   486 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 545

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   546 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 588

GO:0006479 "protein methylation" evidence=IEA

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|I3LNK5 GSPT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 142/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   286 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 343

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  SV PGEN+K++LKGIEE+++ PGF+
Sbjct:   344 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 403

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   404 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 463

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   464 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 506

GO:0006479 "protein methylation" evidence=IEA

GO:0003747 "translation release factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q91855 SUP35 "SUP35 protein" [Xenopus laevis (taxid:8355)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 141/223 (63%), Positives = 174/223 (78%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKEPV  E C W+ G AFI ++D+LP+ NR +DGP  +P+V+K+KDMGTV++G
Sbjct:   377 SGLTGANLKEPV--ETCPWYIGLAFISYLDSLPNFNRSLDGPVRLPIVDKYKDMGTVILG 434

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ L +MPN+  V V  L SD+ E   V PGEN+K++LKGIEE+++ PGF+
Sbjct:   435 KLESGSICKGQQLAMMPNKHIVEVLSLLSDEVETELVAPGENLKLRLKGIEEEEILPGFI 494

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALIC++DKK+GEK
Sbjct:   495 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICMVDKKSGEK 554

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   555 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 597

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J3KQG6 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 141/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   400 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 457

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  +V PGEN+K++LKGIEE+++ PGF+
Sbjct:   458 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFI 517

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   518 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 577

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   578 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 620

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P15170 GSPT1 "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A" [Homo sapiens (taxid:9606)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 141/223 (63%), Positives = 173/223 (77%)

Query:    30 SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
             SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct:   262 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 319

Query:    90 KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
             K+ESG   KGQ LV+MPN+  V V  + SDD E  +V PGEN+K++LKGIEE+++ PGF+
Sbjct:   320 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFI 379

Query:   150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
             LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH   EEV + ALICL+DKK+GEK
Sbjct:   380 LCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEK 439

Query:   210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct:   440 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 482

GO:0005525 "GTP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003747 "translation release factor activity" evidence=IMP

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0003924 "GTPase activity" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0005622 "intracellular" evidence=NAS

GO:0006479 "protein methylation" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R050	ERF3A_MOUSE	No assigned EC number	0.6322	0.8769	0.3474	yes	N/A
Q5R4B3	ERF3B_PONAB	No assigned EC number	0.6143	0.8769	0.3519	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
COG5256	428	COG5256, TEF1, Translation elongation factor EF-1a	7e-59
cd03704	108	cd03704, eRF3c_III, This family represents eEF1alp	4e-50
cd04089	82	cd04089, eRF3_II, eRF3_II: domain II of the eukary	2e-41
PRK12317	425	PRK12317, PRK12317, elongation factor 1-alpha; Rev	1e-38
cd03698	83	cd03698, eRF3_II_like, eRF3_II_like: domain simila	4e-35
TIGR00483	426	TIGR00483, EF-1_alpha, translation elongation fact	1e-33
PTZ00141	446	PTZ00141, PTZ00141, elongation factor 1- alpha; Pr	7e-31
PLN00043	447	PLN00043, PLN00043, elongation factor 1-alpha; Pro	1e-25
COG5258	527	COG5258, GTPBP1, GTPase [General function predicti	9e-21
cd04093	107	cd04093, HBS1_C, HBS1_C: this family represents th	2e-19
cd03705	104	cd03705, EF1_alpha_III, Domain III of EF-1	8e-19
COG3276	447	COG3276, SelB, Selenocysteine-specific translation	8e-15
pfam03143	91	pfam03143, GTP_EFTU_D3, Elongation factor Tu C-ter	2e-14
cd01513	102	cd01513, Translation_factor_III, Domain III of Elo	2e-13
cd01342	83	cd01342, Translation_Factor_II_like, Translation_F	3e-12
cd03693	91	cd03693, EF1_alpha_II, EF1_alpha_II: this family r	3e-12
COG2895	431	COG2895, CysN, GTPases - Sulfate adenylate transfe	2e-11
pfam03144	70	pfam03144, GTP_EFTU_D2, Elongation factor Tu domai	8e-11
cd03696	83	cd03696, selB_II, selB_II: this subfamily represen	5e-10
COG0050	394	COG0050, TufB, GTPases - translation elongation fa	2e-09
TIGR00485	394	TIGR00485, EF-Tu, translation elongation factor TU	4e-09
PLN03127	447	PLN03127, PLN03127, Elongation factor Tu; Provisio	5e-09
cd03697	87	cd03697, EFTU_II, EFTU_II: Elongation factor Tu do	3e-08
PRK12735	396	PRK12735, PRK12735, elongation factor Tu; Reviewed	3e-08
cd03708	87	cd03708, GTPBP_III, Domain III of the GP-1 family	4e-08
PRK12736	394	PRK12736, PRK12736, elongation factor Tu; Reviewed	5e-08
TIGR02034	406	TIGR02034, CysN, sulfate adenylyltransferase, larg	1e-07
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	2e-07
PRK00049	396	PRK00049, PRK00049, elongation factor Tu; Reviewed	4e-07
CHL00071	409	CHL00071, tufA, elongation factor Tu	6e-07
TIGR00475	581	TIGR00475, selB, selenocysteine-specific elongatio	7e-06
PLN03126	478	PLN03126, PLN03126, Elongation factor Tu; Provisio	4e-05
PRK05124	474	PRK05124, cysN, sulfate adenylyltransferase subuni	5e-05
cd03695	81	cd03695, CysN_NodQ_II, CysN_NodQ_II: This subfamil	5e-04

>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

 Score =  192 bits (489), Expect = 7e-59
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKF--KDMGTVV 87
           SG  G NL +    E   W+KG   +  +D L    R +D P  +P+ + +    +GTV 
Sbjct: 192 SGFKGDNLTKKS--ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVP 249

Query: 88  MGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147
           +G+VESG  K GQ +  MP      V  +    EE+S   PG+N+   ++G+E++D+  G
Sbjct: 250 VGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRG 309

Query: 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG 207
            V+   +NP   +  F AQI++L H  II +GY+ V+H H       +  L+  +D +TG
Sbjct: 310 DVIGHSDNPPTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTG 369

Query: 208 EKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           +K +  P+F+K+   AI+++E    +CL++    PQ+GRF LRD 
Sbjct: 370 KKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQLGRFALRDM 414

Length = 428

>gnl|CDD|239675 cd03704, eRF3c_III, This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu

 Score =  159 bits (404), Expect = 4e-50
 Identities = 62/95 (65%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 159 TARVFDAQIVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFV 217
               F+AQI ILE K SII AGYSAV+HIH   EEV +K LI LIDKKTG+KSK RPRFV
Sbjct: 2   VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFV 61

Query: 218 KQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           K     I RLE  G ICL++F+ FPQ+GRFTLRDE
Sbjct: 62  KSGMKVIARLETTGPICLEKFEDFPQLGRFTLRDE 96

eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. Length = 108

>gnl|CDD|239756 cd04089, eRF3_II, eRF3_II: domain II of the eukaryotic class II release factor (eRF3)

 Score =  136 bits (345), Expect = 2e-41
 Identities = 47/82 (57%), Positives = 66/82 (80%)

Query: 71  PFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGE 130
           P  +P+++K+KDMGTVV+GKVESG  KKG  L++MPN+T V V  ++++D EV    PGE
Sbjct: 1   PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGE 60

Query: 131 NIKVKLKGIEEDDVSPGFVLCD 152
           N++++LKGIEE+D+SPGFVLC 
Sbjct: 61  NVRLRLKGIEEEDISPGFVLCS 82

In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. Length = 82

>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed

 Score =  138 bits (351), Expect = 1e-38
 Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 27  ISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMG 84
           I  S   G N+ +    E   W+ G   +  +D L    +  D P  +P+  V     +G
Sbjct: 183 IPVSAFEGDNVVKK--SENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVG 240

Query: 85  TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDV 144
           TV +G+VE+G  K G  +V MP      V  +    EE+    PG+NI   ++G+ + D+
Sbjct: 241 TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDI 300

Query: 145 SPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIH-----CVAEEVNVKALI 199
             G V   P+NP   A  F AQIV+L+H S I  GY+ V H H     C  EE+  K   
Sbjct: 301 KRGDVCGHPDNPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKK--- 357

Query: 200 CLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
             +D +TG+ ++  P+F+K    AI++++    + +++ K  PQ+GRF +RD
Sbjct: 358 --LDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRD 407

Length = 425

>gnl|CDD|239669 cd03698, eRF3_II_like, eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3)

 Score =  120 bits (303), Expect = 4e-35
 Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 1/83 (1%)

Query: 71  PFLMPVVEKFKD-MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPG 129
           PF +P+ +K+KD  GTVV GKVESG  +KG +L++MP++  V V  ++ DDEEV     G
Sbjct: 1   PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAG 60

Query: 130 ENIKVKLKGIEEDDVSPGFVLCD 152
           EN+++KLKGI+E+D+SPG VLC 
Sbjct: 61  ENVRLKLKGIDEEDISPGDVLCS 83

In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils. This group also contains proteins similar to S. cerevisiae Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 83

>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha

 Score =  125 bits (316), Expect = 1e-33
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+KG   +  +DAL    +  D P  +P+  V     +GTV +G+VE+G  K G  +V  
Sbjct: 204 WYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFE 263

Query: 106 PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
           P      V  +    E++    PG+NI   ++G+ + D+  G V   P+NP + A+ F A
Sbjct: 264 PAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKEFTA 323

Query: 166 QIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 225
           QIV+L+H   I  GY+ V H H          L+   D +TG+  +  P+F+K    AI+
Sbjct: 324 QIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIV 383

Query: 226 RLEAAGVICLDQFKLFPQMGRFTLRD 251
           + +    + ++  K  P +GRF +RD
Sbjct: 384 KFKPTKPMVIEAVKEIPPLGRFAIRD 409

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426

>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional

 Score =  118 bits (297), Expect = 7e-31
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 15/230 (6%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVV 87
           SG  G N+ E    +   W+KG   +  +D L    R +D P  +P+  V K   +GTV 
Sbjct: 194 SGWQGDNMIEK--SDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVP 251

Query: 88  MGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147
           +G+VE+G  K G  +   P+     V  +    E+++   PG+N+   +K +   D+  G
Sbjct: 252 VGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRG 311

Query: 148 FVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVM-----HIHCVAEEVNVKALICL 201
           +V  D  N+PA+    F AQ+++L H   I  GY+ V+     HI C   E+  K     
Sbjct: 312 YVASDSKNDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESK----- 366

Query: 202 IDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
           ID+++G+  +  P+ +K    AI+++     +C++ F  +P +GRF +RD
Sbjct: 367 IDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVRD 416

Length = 446

>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional

 Score =  104 bits (259), Expect = 1e-25
 Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 3/207 (1%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+KG   +  +D +    R  D P  +P+  V K   +GTV +G+VE+G  K G  +   
Sbjct: 210 WYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFG 269

Query: 106 PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFD 164
           P      V  +    E +    PG+N+   +K +   D+  G+V  +  ++PA+ A  F 
Sbjct: 270 PTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFT 329

Query: 165 AQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAI 224
           +Q++I+ H   I  GY+ V+  H     V    ++  ID+++G++ +  P+F+K      
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGF 389

Query: 225 MRLEAAGVICLDQFKLFPQMGRFTLRD 251
           +++     + ++ F  +P +GRF +RD
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRD 416

Length = 447

>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only]

 Score = 90.6 bits (225), Expect = 9e-21
 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 21/188 (11%)

Query: 55  IPFIDALPSLNRKMD-GPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRT-- 109
             F   LP   R  D GPFLM + + +    +GTVV G V+SG    G +++L P +   
Sbjct: 331 DEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGK 390

Query: 110 --PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQI 167
              V+V  +      V S   G  I + LKG+E++++  G VL    +P +  R FDA++
Sbjct: 391 FREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAGADP-KAVREFDAEV 449

Query: 168 VILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK---KTGEKS------KTRPRFVK 218
           ++L H + I AGY  V H   + E V  +     IDK     G++       K RP  V+
Sbjct: 450 LVLRHPTTIRAGYEPVFHYETIREAVYFEE----IDKGFLMPGDRGVVRMRFKYRPHHVE 505

Query: 219 QDQIAIMR 226
           + Q  + R
Sbjct: 506 EGQKFVFR 513

Length = 527

>gnl|CDD|239760 cd04093, HBS1_C, HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha

 Score = 80.3 bits (199), Expect = 2e-19
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query: 158 RTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFV 217
            ++  F+A+I+       I  G    +  H + E   +  L+ ++DK TGE SK +PR +
Sbjct: 1   PSSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCL 60

Query: 218 KQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLR 250
            + Q AI+ +E    I L+ FK   ++GR  LR
Sbjct: 61  TKGQTAIVEIELERPIPLELFKDNKELGRVVLR 93

This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 107

>gnl|CDD|239676 cd03705, EF1_alpha_III, Domain III of EF-1

 Score = 78.4 bits (194), Expect = 8e-19
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F AQ+++L H   I  GY+ V+  H          ++  ID +TG+K +  P+F+K    
Sbjct: 6   FTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDA 65

Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
           AI+++     + ++ F  +P +GRF +RD
Sbjct: 66  AIVKIVPQKPLVVETFSEYPPLGRFAVRD 94

Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha). Length = 104

>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

 Score = 72.8 bits (179), Expect = 8e-15
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 58  IDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQ 115
           ID L  + R    PF + +      K +GTVV G V SGE K G  L L P    V V  
Sbjct: 158 IDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRS 217

Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV-FDAQIVILEHKS 174
           + + D +V     G+ + + LKG+E++++  G  L  P     T R+  + +I  L  K+
Sbjct: 218 IQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLFKKT 277

Query: 175 IICAGYSAVMHIH-------CVAEEVNVKALI 199
           +        +HIH            +   A +
Sbjct: 278 L---KQGQPVHIHVGLRSVTGRIVPLEKNAEL 306

Length = 447

>gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 156 PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPR 215
           P +    F AQ+ IL H + I  GY  V + H                   G+K      
Sbjct: 1   PIKPHTKFKAQVYILNHPTPIFNGYRPVFYCHTADVTGKF--------ILPGKK-----E 47

Query: 216 FVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
           FV     AI+ +E    I +++ +      RF +R+
Sbjct: 48  FVMPGDNAIVTVELIKPIAVEKGQ------RFAIRE 77

Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA and binding to EF-Ts pfam00889. Length = 91

>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F A+I +L+H   +  GY  V+++        +  L+  +D KT  + K  P F+K  + 
Sbjct: 6   FVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGER 63

Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
            I+ +E    + L+ F    + GRF LRD
Sbjct: 64  GIVEVELQKPVALETFSENQEGGRFALRD 92

Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the same fold (although they are not completely superimposable), the double split beta-alpha-beta fold. This fold is observed in a large number of ribonucleotide binding proteins and is also referred to as the ribonucleoprotein (RNP) or RNA recognition (RRM) motif. This domain III is found in several elongation factors, as well as in peptide chain release factors and in GT-1 family of GTPase (GTPBP1). Length = 102

>gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 72  FLMPVVEKFKD--MGTVVMGKVESGEAKKGQSLVLMPNRTPV--IVDQLWSDDEEVSSVG 127
               V + FKD   GTV  G+VESG  KKG  + + P    V   V  L     EV    
Sbjct: 1   LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAV 60

Query: 128 PGENIKVKLKGIEEDDVSPGFVLCD 152
            G+ + + LK  ++DD+  G  L D
Sbjct: 61  AGDIVGIVLK--DKDDIKIGDTLTD 83

Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83

>gnl|CDD|239664 cd03693, EF1_alpha_II, EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 69  DGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSV 126
           D P  +P+  V K   +GTV +G+VE+G  K G  +   P      V  +    E +   
Sbjct: 2   DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEA 61

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
            PG+N+   +K + + D+  G V  D  N 
Sbjct: 62  LPGDNVGFNVKNVSKKDIKRGDVAGDSKND 91

EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. Length = 91

>gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 7/207 (3%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+KG   +  ++ +   + +    F  PV  V +         G + SG  K G  +V++
Sbjct: 200 WYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVL 259

Query: 106 PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
           P+     V ++ + D E++    GE + + L   +E D+S G ++   + P   A  FDA
Sbjct: 260 PSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVADAFDA 317

Query: 166 QIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 225
            +V ++ +  +  G S  + I        V+ +   +D  T E  +     +  ++I  +
Sbjct: 318 DVVWMD-EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLE--QEGAESLPLNEIGRV 374

Query: 226 RLEAAGVICLDQFKLFPQMGRFTLRDE 252
           R+     I  D +      G F L D 
Sbjct: 375 RISFDKPIAFDAYAENRATGSFILIDR 401

Length = 431

>gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTP--VIVDQLWSDDEEVSSVGPGENIKVKLKGIEE 141
           GTV  G+VESG  KKG  +V+ PN T     V  L     ++     G N  + L GI  
Sbjct: 1   GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60

Query: 142 DDVSPGFVLC 151
            D+  G  L 
Sbjct: 61  KDIKRGDTLT 70

Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70

>gnl|CDD|239667 cd03696, selB_II, selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu

 Score = 54.4 bits (132), Expect = 5e-10
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 72  FLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPG 129
           F +P+   F  K  GTVV G V SG  K G  + ++P      V  +    ++V     G
Sbjct: 1   FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAG 60

Query: 130 ENIKVKLKGIEEDDVSPGFVLCD 152
           + + + L G++  D+  G VL  
Sbjct: 61  DRVALNLTGVDAKDLERGDVLSS 83

SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. Length = 83

>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 66  RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTP--VIVDQLWSDDE 121
           R +D PFLMPV + F     GTVV G+VE G  K G+ + ++  +      V  +    +
Sbjct: 205 RDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRK 264

Query: 122 EVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
            +     G+N+ V L+G++ +DV  G VL  P +  +    F+A++ +L
Sbjct: 265 LLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS-IKPHTKFEAEVYVL 312

Length = 394

>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 59  DALPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQ--SLVLMPNRTPVIVD 114
           + +P+  R+ D PFLMP+ + F     GTVV G+VE G  K G+   +V + +     V 
Sbjct: 198 EYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVT 257

Query: 115 QLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
            +    +E+     G+N+ + L+GI+ +++  G VL  P +  +    F+A++ +L
Sbjct: 258 GVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGS-IKPHTKFEAEVYVL 312

This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394

>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 11/118 (9%)

Query: 61  LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLM------PNRTPVI 112
           +P   R +D PFLMP+ + F  +  GTV  G+VE G  K G+ + ++      P +T V 
Sbjct: 251 IPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVT 310

Query: 113 VDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
             +++   + +     G+N+ + L+G++ +DV  G V+C P +  +T + F+A+I +L
Sbjct: 311 GVEMFK--KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGS-IKTYKKFEAEIYVL 365

Length = 447

>gnl|CDD|239668 cd03697, EFTU_II, EFTU_II: Elongation factor Tu domain II

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 72  FLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLM---PNRTPVIVDQLWSDDEEVSSV 126
           FLMP+ + F     GTVV G++E G  K G  + ++         +   +    + +   
Sbjct: 1   FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTG-IEMFRKTLDEA 59

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPN 154
             G+N+ V L+G++ +DV  G VL  P 
Sbjct: 60  EAGDNVGVLLRGVKREDVERGMVLAKPG 87

Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher affinity for GDP than for GTP. Length = 87

>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 51/132 (38%)

Query: 66  RKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEV 123
           R +D PFLMP+ + F     GTVV G+VE G  K G                     +EV
Sbjct: 207 RAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG---------------------DEV 245

Query: 124 SSVG-----------------------PGENIKVKLKGIEEDDVSPGFVLCDPN--NPAR 158
             VG                        G+N+ V L+G + +DV  G VL  P    P  
Sbjct: 246 EIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHT 305

Query: 159 TARVFDAQIVIL 170
               F+A++ +L
Sbjct: 306 K---FEAEVYVL 314

Length = 396

>gnl|CDD|239679 cd03708, GTPBP_III, Domain III of the GP-1 family of GTPase

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK---KTGEKSKTRPRFV 217
             F+A+I++L H + I  GY A +HI  + +     A I  IDK   +TG+++  R RF+
Sbjct: 4   WEFEAEILVLHHPTTISPGYQATVHIGSIRQ----TARIVSIDKDVLRTGDRALVRFRFL 59

Query: 218 KQ 219
             
Sbjct: 60  YH 61

This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. Length = 87

>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 25/124 (20%)

Query: 61  LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQS---LVLMPNRTPVI--- 112
           +P+  R  D PFLMPV + F     GTVV G+VE G  K G     + +   +  V+   
Sbjct: 200 IPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGV 259

Query: 113 ------VDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQ 166
                 +D+  +          G+N+ V L+G++ D+V  G VL  P +  +    F A+
Sbjct: 260 EMFRKLLDEGQA----------GDNVGVLLRGVDRDEVERGQVLAKPGS-IKPHTKFKAE 308

Query: 167 IVIL 170
           + IL
Sbjct: 309 VYIL 312

Length = 394

>gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 17/228 (7%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVV------EKFKDM 83
           S   G N+      E   W+ G   +  ++ +       D P   PV         F+  
Sbjct: 178 SALKGDNVVSR--SESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGY 235

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD 143
                G + SG    G  +V++P+     V ++ + D ++     G+ + + L   +E D
Sbjct: 236 A----GTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLD--DEID 289

Query: 144 VSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLID 203
           +S G +L   ++    A  F A +V +  + ++  G S  + +       +V A+   +D
Sbjct: 290 ISRGDLLAAADSAPEVADQFAATLVWMAEEPLL-PGRSYDLKLGTRKVRASVAAIKHKVD 348

Query: 204 KKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
             T EK          + I  + L     I  D +      G F L D
Sbjct: 349 VNTLEKGAA-KSLELNE-IGRVNLSLDEPIAFDPYAENRTTGAFILID 394

Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEK----FKDMGTVVMGKVESGEAKKGQS 101
           W++G + +  ++ +   + +    F  PV  V +    F+       G V SG  + G  
Sbjct: 218 WYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRG----FAGTVASGVVRPGDE 273

Query: 102 LVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161
           +V++P+     V ++ + D ++     G+ + + L   +E D+S G +L   +N    A 
Sbjct: 274 VVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLA--DEIDISRGDMLARADNRPEVAD 331

Query: 162 VFDAQIV 168
            FDA +V
Sbjct: 332 QFDATVV 338

Length = 632

>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 51/132 (38%)

Query: 66  RKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEV 123
           R +D PFLMP+ + F     GTVV G+VE G  K G                     EEV
Sbjct: 207 RAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG---------------------EEV 245

Query: 124 SSVG-----------------------PGENIKVKLKGIEEDDVSPGFVLCDPN--NPAR 158
             VG                        G+N+   L+GI+ +DV  G VL  P    P  
Sbjct: 246 EIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHT 305

Query: 159 TARVFDAQIVIL 170
               F+A++ +L
Sbjct: 306 K---FEAEVYVL 314

Length = 396

>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 19/121 (15%)

Query: 61  LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS--LV-LMPNRTPVIVD- 114
           +P+  R  D PFLM + + F     GTV  G++E G  K G +  +V L   +T  +   
Sbjct: 210 IPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGL 269

Query: 115 ---QLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN--NPARTARVFDAQIVI 169
              Q  + DE ++    G+N+ + L+GI+++D+  G VL  P    P      F+AQ+ I
Sbjct: 270 EMFQK-TLDEGLA----GDNVGILLRGIQKEDIERGMVLAKPGTITPHTK---FEAQVYI 321

Query: 170 L 170
           L
Sbjct: 322 L 322

Length = 409

>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 65  NRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEE 122
            +++  P  M +   F  K  GTVV G   SGE K G +L L+P    V V  + + +++
Sbjct: 170 IKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQD 229

Query: 123 VSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA-RTARVFDAQIVILEHKSIICAGYS 181
           V     G+ I + L  +E + +  G ++  P +P  R    F A++ +LE +        
Sbjct: 230 VEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPKLRVVVKFIAEVPLLELQ-------- 281

Query: 182 AVMHIHCVAEEVNVKALICLIDKKTGE 208
              HI         K  I L+DK    
Sbjct: 282 -PYHIAHGMSVTTGK--ISLLDKGIAL 305

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581

>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 61  LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS--LVLMPNRTPVIVDQL 116
           +P   R+ D PFL+ V + F     GTV  G+VE G  K G++  +V +       V  +
Sbjct: 279 IPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGV 338

Query: 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
               + +     G+N+ + L+GI++ D+  G VL  P +     + F+A + +L+
Sbjct: 339 EMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTK-FEAIVYVLK 392

Length = 478

>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--V----EKFKDMGTVVMGKVESGEAKKGQS 101
           W+ G   +  ++ +         PF  PV  V      F+       G + SG  K G  
Sbjct: 222 WYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY----AGTLASGVVKVGDR 277

Query: 102 LVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR 161
           + ++P+     V ++ + D ++     GE I + L+  +E D+S G +L   +   +  +
Sbjct: 278 VKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLE--DEIDISRGDLLVAADEALQAVQ 335

Query: 162 VFDAQIV 168
              A +V
Sbjct: 336 HASADVV 342

Length = 474

>gnl|CDD|239666 cd03695, CysN_NodQ_II, CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 72  FLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPG 129
           F  PV  V +         G + SG  + G  +V++P+     V  + + D E+   G G
Sbjct: 1   FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAG 60

Query: 130 ENIKVKLKGIEEDDVSPGFVLCD 152
           E++ + L+  +E DVS G V+  
Sbjct: 61  ESVTLTLE--DEIDVSRGDVIVA 81

Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which shows no aa sequence similarity to CysN or NodQ. CysN and the N-terminal portion of NodQ show similarity to GTPases involved in translation, in particular, EF-Tu and EF-1alpha. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	100.0
PLN00043	447	elongation factor 1-alpha; Provisional	100.0
PTZ00141	446	elongation factor 1- alpha; Provisional	100.0
PRK12317	425	elongation factor 1-alpha; Reviewed	100.0
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	100.0
KOG0459|consensus	501		100.0
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	100.0
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	100.0
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	100.0
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	100.0
KOG0458|consensus	603		100.0
CHL00071	409	tufA elongation factor Tu	100.0
PRK00049	396	elongation factor Tu; Reviewed	100.0
PLN03126	478	Elongation factor Tu; Provisional	100.0
PRK12735	396	elongation factor Tu; Reviewed	100.0
PRK12736	394	elongation factor Tu; Reviewed	100.0
TIGR00485	394	EF-Tu translation elongation factor TU. This align	100.0
PLN03127	447	Elongation factor Tu; Provisional	100.0
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	100.0
KOG0460|consensus	449		100.0
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.98
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.98
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.97
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.97
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.97
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.96
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.96
KOG0463|consensus	641		99.91
cd03693	91	EF1_alpha_II EF1_alpha_II: this family represents	99.88
cd03704	108	eRF3c_III This family represents eEF1alpha-like C-	99.87
cd03705	104	EF1_alpha_III Domain III of EF-1. Eukaryotic elong	99.86
cd04093	107	HBS1_C HBS1_C: this family represents the C-termin	99.86
cd04089	82	eRF3_II eRF3_II: domain II of the eukaryotic class	99.86
cd03698	83	eRF3_II_like eRF3_II_like: domain similar to domai	99.85
cd04095	103	CysN_NoDQ_III TCysN_NoDQ_II: This subfamily repres	99.84
cd03694	87	GTPBP_II Domain II of the GP-1 family of GTPase. T	99.82
cd03697	87	EFTU_II EFTU_II: Elongation factor Tu domain II. E	99.82
KOG1143|consensus	591		99.82
KOG0461|consensus	522		99.81
cd03695	81	CysN_NodQ_II CysN_NodQ_II: This subfamily represen	99.8
cd03696	83	selB_II selB_II: this subfamily represents the dom	99.8
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.79
KOG0052|consensus	391		99.77
cd01513	102	Translation_factor_III Domain III of Elongation fa	99.76
PF03143	99	GTP_EFTU_D3: Elongation factor Tu C-terminal domai	99.75
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.62
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.58
PRK10218	607	GTP-binding protein; Provisional	99.55
PRK05433	600	GTP-binding protein LepA; Provisional	99.52
cd03688	113	eIF2_gamma_II eIF2_gamma_II: this subfamily repres	99.47
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.46
cd03708	87	GTPBP_III Domain III of the GP-1 family of GTPase.	99.4
cd03692	84	mtIF2_IVc mtIF2_IVc: this family represents the C2	99.38
KOG0462|consensus	650		99.37
cd03707	90	EFTU_III Domain III of elongation factor (EF) Tu.	99.37
cd03706	93	mtEFTU_III Domain III of mitochondrial EF-TU (mtEF	99.33
KOG0466|consensus	466		99.18
PF03144	74	GTP_EFTU_D2: Elongation factor Tu domain 2; InterP	99.15
cd01342	83	Translation_Factor_II_like Translation_Factor_II_l	99.15
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.12
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.11
cd04094	97	selB_III This family represents the domain of elon	99.07
PRK04004	586	translation initiation factor IF-2; Validated	99.04
PF14578	81	GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1	99.03
PRK14845	1049	translation initiation factor IF-2; Provisional	99.02
PRK05306	787	infB translation initiation factor IF-2; Validated	99.01
PRK12740	668	elongation factor G; Reviewed	98.99
PRK13351	687	elongation factor G; Reviewed	98.94
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.76
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.73
CHL00189	742	infB translation initiation factor 2; Provisional	98.66
PRK07560	731	elongation factor EF-2; Reviewed	98.66
PRK00007	693	elongation factor G; Reviewed	98.66
PRK12739	691	elongation factor G; Reviewed	98.64
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.59
cd03699	86	lepA_II lepA_II: This subfamily represents the dom	98.59
cd04092	83	mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri	98.59
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.57
cd04088	83	EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen	98.56
cd03690	85	Tet_II Tet_II: This subfamily represents domain II	98.54
cd03691	86	BipA_TypA_II BipA_TypA_II: domain II of BipA (also	98.54
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.47
cd04091	81	mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri	98.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.4
cd03689	85	RF3_II RF3_II: this subfamily represents the domai	98.31
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.19
KOG1145|consensus	683		97.97
KOG0465|consensus	721		97.8
cd03700	93	eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami	97.75
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.55
cd04090	94	eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina	97.5
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.46
CHL00189	742	infB translation initiation factor 2; Provisional	97.45
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.37
PRK05306	787	infB translation initiation factor IF-2; Validated	97.35
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	96.94
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	96.81
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.76
cd03702	95	IF2_mtIF2_II This family represents the domain II	96.53
cd03703	110	aeIF5B_II aeIF5B_II: This family represents the do	96.35
PRK04004	586	translation initiation factor IF-2; Validated	96.27
KOG1144|consensus	1064		96.1
cd03701	95	IF2_IF5B_II IF2_IF5B_II: This family represents th	96.03
PTZ00416	836	elongation factor 2; Provisional	95.96
PRK14845	1049	translation initiation factor IF-2; Provisional	95.83
KOG1144|consensus	1064		93.56
PF09173	88	eIF2_C: Initiation factor eIF2 gamma, C terminal;	92.46
KOG0469|consensus	842		92.33
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	89.43

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-57  Score=396.63  Aligned_cols=247  Identities=32%  Similarity=0.583  Sum_probs=237.4

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      |+++.+++.+++.+++ .+++++||||||++|+|+.+.+  ++++||+||||+++||.+++|.+..++|||++|+++|+ 
T Consensus       166 ~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~~~s--~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i  242 (428)
T COG5256         166 EEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLTKKS--ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSI  242 (428)
T ss_pred             HHHHHHHHHHHHHcCC-CccCCeEEecccccCCcccccC--cCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEe
Confidence            5678888887777776 6778999999999999999987  89999999999999999999999999999999999995 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA  160 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~  160 (252)
                       |.|+++.|+|++|.|++||+|+++|.+...+|+||++++++.+.|.+||+|++++++++..||++||+++++++|+..+
T Consensus       243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s  322 (428)
T COG5256         243 SGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVS  322 (428)
T ss_pred             cCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccc
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL  240 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~  240 (252)
                      .+|.|+|.++.++..|.+||++++|+|+.+++|++.+|+.++|++||+..+..|.|++.|+.++|++++.+|+|++.+++
T Consensus       323 ~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~  402 (428)
T COG5256         323 PEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSE  402 (428)
T ss_pred             cceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeC
Q psy10357        241 FPQMGRFTLRDE  252 (252)
Q Consensus       241 ~~~lgrfilrd~  252 (252)
                      ++.||||+|||.
T Consensus       403 ~~~Lgrfalrd~  414 (428)
T COG5256         403 IPQLGRFALRDM  414 (428)
T ss_pred             CCccceEEEEeC
Confidence            999999999983

>PLN00043 elongation factor 1-alpha; Provisional

Probab=100.00  E-value=4.5e-55  Score=400.89  Aligned_cols=247  Identities=25%  Similarity=0.511  Sum_probs=233.3

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      +.+..+++.+++++++ +.++++|||+||++|+|+.+.+  ..++||+||||+++|+.+++|.+..+.||||+|+++|+ 
T Consensus       168 ~~i~~ei~~~l~~~g~-~~~~~~~ipiSa~~G~ni~~~~--~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~  244 (447)
T PLN00043        168 DEIVKEVSSYLKKVGY-NPDKIPFVPISGFEGDNMIERS--TNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKI  244 (447)
T ss_pred             HHHHHHHHHHHHHcCC-CcccceEEEEeccccccccccc--cCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEe
Confidence            3457788889998886 5678999999999999998876  67999999999999999999999899999999999996 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC-CCCcce
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP-NNPART  159 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~-~~~~~~  159 (252)
                       |.|++++|+|++|.+++||.|.++|++..++|+||+.++.++++|.|||+|++.|++++..+++||++||++ +.|+..
T Consensus       245 ~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~  324 (447)
T PLN00043        245 GGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKE  324 (447)
T ss_pred             CCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCCcc
Confidence             889999999999999999999999999999999999999999999999999999999988999999999997 567788


Q ss_pred             ecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       160 ~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                      +++|+|+|.||+++.++.+||++++|+|+.+++|+|.+|.+++|.+||+..+.+|++|++||.|.|+|++++|+|+|+|+
T Consensus       325 ~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~  404 (447)
T PLN00043        325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS  404 (447)
T ss_pred             ccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcEEEEecc
Confidence            99999999999999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             CCCCceeEEEEeC
Q psy10357        240 LFPQMGRFTLRDE  252 (252)
Q Consensus       240 ~~~~lgrfilrd~  252 (252)
                      +++.||||+|||.
T Consensus       405 ~~~~lGrf~lrd~  417 (447)
T PLN00043        405 EYPPLGRFAVRDM  417 (447)
T ss_pred             cCCCCceEEEEEC
Confidence            9999999999985

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=100.00  E-value=4.5e-53  Score=387.79  Aligned_cols=247  Identities=28%  Similarity=0.541  Sum_probs=232.1

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      +.++.+++.+|+.+++ ..+++||||+||++|+|+.+++  ..++||+||+|+++|+.+++|.+..++||||+|+++|+ 
T Consensus       168 ~~i~~~i~~~l~~~g~-~~~~~~~ipiSa~~g~ni~~~~--~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v  244 (446)
T PTZ00141        168 DEIKKEVSAYLKKVGY-NPEKVPFIPISGWQGDNMIEKS--DNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKI  244 (446)
T ss_pred             HHHHHHHHHHHHhcCC-CcccceEEEeecccCCCcccCC--CCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEec
Confidence            4567788888888876 4568999999999999998877  78999999999999999988888889999999999996 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC-CCcce
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN-NPART  159 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~  159 (252)
                       |.|++++|+|++|.|++||+|.++|++..++|++|+.+++++++|.|||+|+++|++++..+++|||+||+++ .|+..
T Consensus       245 ~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~  324 (446)
T PTZ00141        245 GGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKNDPAKE  324 (446)
T ss_pred             CCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCCCCcc
Confidence             8899999999999999999999999999999999999999999999999999999999889999999999985 56677


Q ss_pred             ecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       160 ~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                      +++|+|+|.||+++.++.+||++++|+|+.+++|+|..|.+++|.+|++..+.+|++|++|+.+.|+|++++|+|+++|+
T Consensus       325 ~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~  404 (446)
T PTZ00141        325 CADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFN  404 (446)
T ss_pred             ceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecc
Confidence            89999999999998889999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             CCCCceeEEEEeC
Q psy10357        240 LFPQMGRFTLRDE  252 (252)
Q Consensus       240 ~~~~lgrfilrd~  252 (252)
                      +++.||||+|||.
T Consensus       405 ~~~~lgrfilrd~  417 (446)
T PTZ00141        405 EYPPLGRFAVRDM  417 (446)
T ss_pred             cCCCCccEEEEEC
Confidence            9999999999984

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=100.00  E-value=1.7e-52  Score=383.52  Aligned_cols=245  Identities=30%  Similarity=0.542  Sum_probs=230.6

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D   82 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g   82 (252)
                      +..++.++++.+++ ..++++++|+||++|+|+.+++  .+++||+|++|+++|+.+++|.+..++||||+|+++|+  |
T Consensus       162 ~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~~~~--~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g  238 (425)
T PRK12317        162 VKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVVKKS--ENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISG  238 (425)
T ss_pred             HHHHHHHHHHhhCC-CcCcceEEEeecccCCCccccc--cCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCC
Confidence            45677777777765 4456899999999999999987  78999999999999999999888889999999999996  8


Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV  162 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~  162 (252)
                      .|++++|+|++|+|++||.|.++|++..++|+||+.+++++++|.|||+|+++|++++..++++|++||++++++..+++
T Consensus       239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~  318 (425)
T PRK12317        239 VGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEE  318 (425)
T ss_pred             CeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccE
Confidence            89999999999999999999999999999999999999999999999999999999988999999999999887888999


Q ss_pred             EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357        163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP  242 (252)
Q Consensus       163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~  242 (252)
                      |+|+|.|++++.++.+||++++|+|+.+++|+|+.|.+.+|.+|++..+.+|++|++||.|.|+|++++|+|+++|++++
T Consensus       319 f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~  398 (425)
T PRK12317        319 FTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIP  398 (425)
T ss_pred             EEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCC
Confidence            99999999998889999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             CceeEEEEeC
Q psy10357        243 QMGRFTLRDE  252 (252)
Q Consensus       243 ~lgrfilrd~  252 (252)
                      .||||+|||.
T Consensus       399 ~lgrfilr~~  408 (425)
T PRK12317        399 QLGRFAIRDM  408 (425)
T ss_pred             CCccEEEEEC
Confidence            9999999984

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=100.00  E-value=3.6e-52  Score=381.40  Aligned_cols=246  Identities=29%  Similarity=0.530  Sum_probs=231.7

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      .++.++..++++++. ..++++|+|+||++|+|+.+..  ..++||+|++|+++|+.+++|.+..+.||||+|+++|+  
T Consensus       163 ~~~~ei~~~~~~~g~-~~~~~~~i~iSA~~g~ni~~~~--~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~  239 (426)
T TIGR00483       163 AIKKEVSNLIKKVGY-NPDTVPFIPISAWNGDNVIKKS--ENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSIT  239 (426)
T ss_pred             HHHHHHHHHHHHcCC-CcccceEEEeeccccccccccc--cCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecC
Confidence            456778888887775 4567899999999999999887  77999999999999999998888889999999999996  


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                      |.|++++|+|++|.+++||.|.++|.+..++|+||+.+++++++|.|||+|+++|++++..++++|++|++++.|++.++
T Consensus       240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~  319 (426)
T TIGR00483       240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAK  319 (426)
T ss_pred             CCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999987788899


Q ss_pred             EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357        162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF  241 (252)
Q Consensus       162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~  241 (252)
                      +|+|+|.||+++.++.+||++++|+|+.+++|+|+.|...+|+++++..+.+|++|++||.+.|+|++++|+|+++|+++
T Consensus       320 ~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~  399 (426)
T TIGR00483       320 EFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEI  399 (426)
T ss_pred             EEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccC
Confidence            99999999999889999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             CCceeEEEEeC
Q psy10357        242 PQMGRFTLRDE  252 (252)
Q Consensus       242 ~~lgrfilrd~  252 (252)
                      +.||||+|||.
T Consensus       400 ~~~grf~lr~~  410 (426)
T TIGR00483       400 PPLGRFAIRDM  410 (426)
T ss_pred             CCCccEEEEEC
Confidence            99999999984

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0459|consensus

Probab=100.00  E-value=5.9e-51  Score=354.67  Aligned_cols=248  Identities=58%  Similarity=0.956  Sum_probs=237.6

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD   82 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g   82 (252)
                      ++.+.+++.||.++++-.-.++.|+|+||++|.|+.+... ..++||.||++++.|+.+|..+|..+.||||+|.+.|++
T Consensus       240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kykd  318 (501)
T KOG0459|consen  240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYKD  318 (501)
T ss_pred             HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEeehhhhccc
Confidence            5678899999999998556778999999999999988753 579999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV  162 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~  162 (252)
                      .||++.|++++|+++.||.++++|.+..+.|.+|...+.+++.+.+||++.|.|+|++..||..|.+||++++|..+.+.
T Consensus       319 mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~~s~~~  398 (501)
T KOG0459|consen  319 MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPCKSGRT  398 (501)
T ss_pred             cceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCccccccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357        163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP  242 (252)
Q Consensus       163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~  242 (252)
                      |+|+|.++.++.-|.+||.++||+|+....|.| +++..+|++||++.+.+|+|++.|+.++++|+...|||+++|++++
T Consensus       399 F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~p  477 (501)
T KOG0459|consen  399 FDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPICLETFKDYP  477 (501)
T ss_pred             EEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcEehhhcccch
Confidence            999999999999899999999999999999999 6779999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEeC
Q psy10357        243 QMGRFTLRDE  252 (252)
Q Consensus       243 ~lgrfilrd~  252 (252)
                      ++|||.|||+
T Consensus       478 qmgRFtLRde  487 (501)
T KOG0459|consen  478 QMGRFTLRDE  487 (501)
T ss_pred             hhcceEEecC
Confidence            9999999996

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=100.00  E-value=4.3e-47  Score=350.66  Aligned_cols=239  Identities=18%  Similarity=0.244  Sum_probs=214.9

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC-
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD-   82 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g-   82 (252)
                      .++.++..+++.+++  ...++|||+||++|+|+.+++  +.++||+|+||+++|+.+++|.+..+.||||+|+++|+. 
T Consensus       182 ~i~~~l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~~--~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~  257 (474)
T PRK05124        182 RIREDYLTFAEQLPG--NLDIRFVPLSALEGDNVVSQS--ESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPN  257 (474)
T ss_pred             HHHHHHHHHHHhcCC--CCCceEEEEEeecCCCccccc--ccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecC
Confidence            344555566666653  246799999999999999887  789999999999999999988888899999999999862 


Q ss_pred             -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                       ....+.|+|++|.|++||+|.++|.++.++|++|+.++.++++|.|||+|+++|+  +..++++||+||+++.++..++
T Consensus       258 ~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~--~~~~i~rG~VL~~~~~~~~~~~  335 (474)
T PRK05124        258 LDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLE--DEIDISRGDLLVAADEALQAVQ  335 (474)
T ss_pred             CcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeC--CccccCCccEEECCCCCCccce
Confidence             2233789999999999999999999999999999999999999999999999998  4678999999999988778899


Q ss_pred             EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357        162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF  241 (252)
Q Consensus       162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~  241 (252)
                      .|+|++.||+ +.+|.+|+++.+|+|+.+++|+|..|.+++|.+||++.  +|++|++|+.+.|+|++++|+|+++|+++
T Consensus       336 ~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~--~~~~l~~g~~a~v~l~~~~pv~~e~~~~~  412 (474)
T PRK05124        336 HASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQR--EAENLPLNGIGLVELTFDEPLVLDPYQQN  412 (474)
T ss_pred             EEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCccc--CccccCCCCEEEEEEEECCeeccccCCcC
Confidence            9999999998 56799999999999999999999999999999999864  46899999999999999999999999999


Q ss_pred             CCceeEEEEe
Q psy10357        242 PQMGRFTLRD  251 (252)
Q Consensus       242 ~~lgrfilrd  251 (252)
                      ++||||+|||
T Consensus       413 ~~lGRfil~d  422 (474)
T PRK05124        413 RVTGGFIFID  422 (474)
T ss_pred             CcceeEEEEE
Confidence            9999999976

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=100.00  E-value=4.7e-47  Score=345.18  Aligned_cols=238  Identities=20%  Similarity=0.285  Sum_probs=216.5

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      .++.++..+++++++   .+++|+|+||++|+|+.+++  +.++||+||||+++|+.++.|.+..+.||||+|+++|+  
T Consensus       155 ~i~~~~~~~~~~~~~---~~~~iipiSA~~g~ni~~~~--~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~  229 (406)
T TIGR02034       155 NIKKDYLAFAEQLGF---RDVTFIPLSALKGDNVVSRS--ESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPN  229 (406)
T ss_pred             HHHHHHHHHHHHcCC---CCccEEEeecccCCCCcccc--cCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecC
Confidence            345566666666665   46899999999999999887  78999999999999999998888889999999999985  


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                      ..+..+.|+|++|.+++||.|.++|.+..++|++|++++.++++|.|||+|+++|+  +..++++|++||+++.++..++
T Consensus       230 ~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~--~~~~i~rG~vl~~~~~~~~~~~  307 (406)
T TIGR02034       230 LDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLD--DEIDISRGDLLAAADSAPEVAD  307 (406)
T ss_pred             CCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEEC--CccccCCccEEEcCCCCCCcce
Confidence            23344789999999999999999999999999999999999999999999999998  4678999999999988788899


Q ss_pred             EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357        162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF  241 (252)
Q Consensus       162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~  241 (252)
                      .|+|++.|+++ .+|.+|+++++|+|+.+++|+|..|.+.+|.+||++.  +++++++|+.+.|+|++++|+|+++|+++
T Consensus       308 ~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~--~~~~l~~~~~~~v~l~~~~p~~~~~~~~~  384 (406)
T TIGR02034       308 QFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKG--AAKSLELNEIGRVNLSLDEPIAFDPYAEN  384 (406)
T ss_pred             EEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCccc--CCcccCCCCEEEEEEEECCeeccCcccCC
Confidence            99999999985 5799999999999999999999999999999999865  46999999999999999999999999999


Q ss_pred             CCceeEEEEe
Q psy10357        242 PQMGRFTLRD  251 (252)
Q Consensus       242 ~~lgrfilrd  251 (252)
                      ++||||+|||
T Consensus       385 ~~lGr~~l~d  394 (406)
T TIGR02034       385 RTTGAFILID  394 (406)
T ss_pred             CcceeEEEEE
Confidence            9999999965

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-45  Score=317.74  Aligned_cols=239  Identities=21%  Similarity=0.328  Sum_probs=219.7

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-C
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-D   82 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-g   82 (252)
                      .+..+...|.++|+.   ..+.+||+||+.|+|+...+  +.||||+||||++.|+.+........+||||||+.+.+ +
T Consensus       161 ~I~~dy~~fa~~L~~---~~~~~IPiSAl~GDNV~~~s--~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~  235 (431)
T COG2895         161 AIVADYLAFAAQLGL---KDVRFIPISALLGDNVVSKS--ENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPN  235 (431)
T ss_pred             HHHHHHHHHHHHcCC---CcceEEechhccCCcccccc--cCCCcccCccHHHHHhhccccccccccceeeceEEecCCC
Confidence            344555667788886   55599999999999999988  99999999999999999988777778899999999986 2


Q ss_pred             -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                       .-+-+.|+|.+|++++||.|.++|+++..+|+.|..++.++++|.+|+.|++.|.  +..|++|||+|++.+.++.+++
T Consensus       236 ~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~~~  313 (431)
T COG2895         236 LDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVAD  313 (431)
T ss_pred             CcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcchhh
Confidence             2466899999999999999999999999999999999999999999999999999  8899999999999999999999


Q ss_pred             EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357        162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF  241 (252)
Q Consensus       162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~  241 (252)
                      .|.|.+.||...+ +.+|..|.+..++..+.++|..|.+++|.+|.++..  .+.|..|+.+.|++.+++|+++++|.+|
T Consensus       314 ~f~A~vvWm~~~p-l~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~--a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N  390 (431)
T COG2895         314 AFDADVVWMDEEP-LLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEG--AESLPLNEIGRVRISFDKPIAFDAYAEN  390 (431)
T ss_pred             hcceeEEEecCCC-CCCCceEEEEecceEEEEEeeeeEEEEecccccccc--ccccCCCcceEEEEecCCceeecccccC
Confidence            9999999999665 789999999999999999999999999999988774  4899999999999999999999999999


Q ss_pred             CCceeEEEEeC
Q psy10357        242 PQMGRFTLRDE  252 (252)
Q Consensus       242 ~~lgrfilrd~  252 (252)
                      +.+|+|||.|+
T Consensus       391 ~atG~FIlID~  401 (431)
T COG2895         391 RATGSFILIDR  401 (431)
T ss_pred             cccccEEEEEc
Confidence            99999999985

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=100.00  E-value=8e-45  Score=347.08  Aligned_cols=238  Identities=20%  Similarity=0.296  Sum_probs=216.4

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-C
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-D   82 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-g   82 (252)
                      .+..++..+++++++   ++++++|+||++|+|+.+.+  +.++||.|+||+++|+.+++|.+..++||||+|+++|+ +
T Consensus       179 ~i~~~i~~~~~~~~~---~~~~iipiSA~~g~ni~~~~--~~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~  253 (632)
T PRK05506        179 EIVADYRAFAAKLGL---HDVTFIPISALKGDNVVTRS--ARMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPN  253 (632)
T ss_pred             HHHHHHHHHHHHcCC---CCccEEEEecccCCCccccc--cCCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEecC
Confidence            355666777777775   56799999999999999876  67999999999999999988877789999999999986 2


Q ss_pred             -CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         83 -MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        83 -~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                       .+..+.|+|++|.|++||+|.++|.++.++|+||++++.++++|.|||+|+++|+  +..++++|++||++++++..++
T Consensus       254 ~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~--~~~~i~rG~vL~~~~~~~~~~~  331 (632)
T PRK05506        254 LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLA--DEIDISRGDMLARADNRPEVAD  331 (632)
T ss_pred             CCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEec--CccccCCccEEecCCCCCccee
Confidence             2244789999999999999999999999999999999999999999999999998  5678999999999988788899


Q ss_pred             EEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCC
Q psy10357        162 VFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLF  241 (252)
Q Consensus       162 ~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~  241 (252)
                      .|+|++.||++++ +.+|+++++|+|+.+++|+|..|.+++|.+|++.  .+|++|++|+.+.|+|++++|+|+++|+++
T Consensus       332 ~f~a~i~~l~~~~-~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~  408 (632)
T PRK05506        332 QFDATVVWMAEEP-LLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDAPIAFDPYARN  408 (632)
T ss_pred             EEEEEEEEecccc-cCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECCEEeeeecccc
Confidence            9999999999764 7799999999999999999999999999998875  578999999999999999999999999999


Q ss_pred             CCceeEEEEe
Q psy10357        242 PQMGRFTLRD  251 (252)
Q Consensus       242 ~~lgrfilrd  251 (252)
                      +.||||+|||
T Consensus       409 ~~lGRfilrd  418 (632)
T PRK05506        409 RTTGSFILID  418 (632)
T ss_pred             ccCceEEEEe
Confidence            9999999987

>KOG0458|consensus

Probab=100.00  E-value=2e-45  Score=333.07  Aligned_cols=249  Identities=30%  Similarity=0.463  Sum_probs=234.7

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      |+++++++.||++...+.+.++.||||||++|+|+....+. ....||+||||++.|+.+.+|.+..++||||+|.|+|+
T Consensus       336 ~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~  415 (603)
T KOG0458|consen  336 EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYP  415 (603)
T ss_pred             HHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheee
Confidence            67899999999666656788999999999999999887433 56899999999999999999999999999999999997


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEe-CCCCCcc
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLC-DPNNPAR  158 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~-~~~~~~~  158 (252)
                        +.|.+++|+|++|.|+.||+|+++|+...++|++|.+++++...|.|||.|.+.|.++....+..|+++| .++.|..
T Consensus       416 ~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~  495 (603)
T KOG0458|consen  416 LPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFPIS  495 (603)
T ss_pred             cCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCcccc
Confidence              6788999999999999999999999999999999999999999999999999999999999999999999 6777788


Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .+..|.+++.||+...|+..|..+.+|.|+..++|++.++.+.+|+.||+..++.|++|..||.|.++++++.|||+++|
T Consensus       496 ~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf  575 (603)
T KOG0458|consen  496 KTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERPICLETF  575 (603)
T ss_pred             ceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCchhhhhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEe
Q psy10357        239 KLFPQMGRFTLRD  251 (252)
Q Consensus       239 ~~~~~lgrfilrd  251 (252)
                      .++++||||+||.
T Consensus       576 ~~~~~lgr~vlr~  588 (603)
T KOG0458|consen  576 AENRALGRVVLRK  588 (603)
T ss_pred             hhchhheeEEEec
Confidence            9999999999995

>CHL00071 tufA elongation factor Tu

Probab=100.00  E-value=3.2e-41  Score=307.29  Aligned_cols=234  Identities=22%  Similarity=0.347  Sum_probs=204.6

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC---CcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEe
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP---EICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVV   77 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~---~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~   77 (252)
                      |.++.++..+|+.+++ +.+++||+|+||++|+|+...+..   ..++||++ ++|+++|+. +++|.++.+.||||+|+
T Consensus       148 ~~~~~~l~~~l~~~~~-~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~  226 (409)
T CHL00071        148 ELVELEVRELLSKYDF-PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIE  226 (409)
T ss_pred             HHHHHHHHHHHHHhCC-CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEE
Confidence            4566788899988886 456799999999999998755411   13589985 999999987 56777888999999999


Q ss_pred             eEEc--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         78 EKFK--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        78 ~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      ++|+  |.|++++|+|.+|.+++||.|.++|.  +..++|++|+++++++++|.|||+|++.|++++..++++||+||++
T Consensus       227 ~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~  306 (409)
T CHL00071        227 DVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP  306 (409)
T ss_pred             EEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence            9995  88999999999999999999999874  5789999999999999999999999999999888999999999999


Q ss_pred             CCCcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357        154 NNPARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE  228 (252)
Q Consensus       154 ~~~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~  228 (252)
                      +. +..+++|+|+|.+|++     +.++.+||++++|+|+.+++|+|+.|...    ++    ..|++|++||.+.|+|+
T Consensus       307 ~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~~----~~~~~l~~g~~a~v~l~  377 (409)
T CHL00071        307 GT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----DG----SKTEMVMPGDRIKMTVE  377 (409)
T ss_pred             CC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----CC----CCCcEecCCCEEEEEEE
Confidence            75 5678999999999997     56899999999999999999999988542    11    35689999999999999


Q ss_pred             eCceEEeeecCCCCCceeEEEEeC
Q psy10357        229 AAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       229 l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +++|+|++++      |||+|||.
T Consensus       378 ~~~pi~~e~~------~rfilR~~  395 (409)
T CHL00071        378 LIYPIAIEKG------MRFAIREG  395 (409)
T ss_pred             ECCeEEEeeC------CEEEEecC
Confidence            9999999985      79999984

>PRK00049 elongation factor Tu; Reviewed

Probab=100.00  E-value=5.1e-41  Score=304.69  Aligned_cols=223  Identities=24%  Similarity=0.325  Sum_probs=198.7

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      .++.+++.+|+.+++ .++++||+|+||++|+|-   +  ..++||+| ++|+++|+. ++.|.+..++||||+|+++|+
T Consensus       149 ~~~~~i~~~l~~~~~-~~~~~~iv~iSa~~g~~~---~--~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~  222 (396)
T PRK00049        149 LVEMEVRELLSKYDF-PGDDTPIIRGSALKALEG---D--DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFS  222 (396)
T ss_pred             HHHHHHHHHHHhcCC-CccCCcEEEeecccccCC---C--CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence            456788888888886 567899999999999872   2  56899986 899999987 677888889999999999996


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA  157 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~  157 (252)
                        |.|++++|+|++|.+++||+|.++|.  ++.++|+||+.+++++++|.|||+|+++|++++..++++|++||+++. +
T Consensus       223 v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~-~  301 (396)
T PRK00049        223 ISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGS-I  301 (396)
T ss_pred             eCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCC-C
Confidence              89999999999999999999999987  688999999999999999999999999999998899999999999875 4


Q ss_pred             ceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357        158 RTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV  232 (252)
Q Consensus       158 ~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~  232 (252)
                      .+++.|+|+|.+|++     ++++.+||++++|+|+.++.|+|. +            ..+|++|++||.+.|+|++++|
T Consensus       302 ~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~i~~~~p  368 (396)
T PRK00049        302 TPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMTVELIAP  368 (396)
T ss_pred             CcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEEEEECce
Confidence            567999999999997     578999999999999999999982 2            1245889999999999999999


Q ss_pred             EEeeecCCCCCceeEEEEeC
Q psy10357        233 ICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       233 i~~~~~~~~~~lgrfilrd~  252 (252)
                      +|++++      |||+|||.
T Consensus       369 ~~~e~~------~RfilR~~  382 (396)
T PRK00049        369 IAMEEG------LRFAIREG  382 (396)
T ss_pred             EEEeeC------CEEEEecC
Confidence            999985      79999983

>PLN03126 Elongation factor Tu; Provisional

Probab=100.00  E-value=4.3e-41  Score=309.93  Aligned_cols=234  Identities=23%  Similarity=0.314  Sum_probs=203.8

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCC---CCCcCCCCc-cCchHHhhcc-CCCCCCCCCCCeeEEEe
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPV---GPEICTWWK-GGAFIPFIDA-LPSLNRKMDGPFLMPVV   77 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~---~~~~~~w~~-g~~L~~~l~~-i~~~~~~~~~p~~~~I~   77 (252)
                      |.++.++..+|+++++ +.+++||+|+||++|+|+....   .....+||+ +++|+++|+. ++.|.++.++||||+|+
T Consensus       217 ~~i~~~i~~~l~~~g~-~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~  295 (478)
T PLN03126        217 ELVELEVRELLSSYEF-PGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVE  295 (478)
T ss_pred             HHHHHHHHHHHHhcCC-CcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEE
Confidence            4566788899998886 5578999999999998874211   012359998 5899999887 45678888999999999


Q ss_pred             eEEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         78 EKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        78 ~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      ++|+  |.|+|++|+|++|.|++||.|.++|.+  ..++|++|+.+++++++|.|||+|+++|++++..++++|++||++
T Consensus       296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~  375 (478)
T PLN03126        296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP  375 (478)
T ss_pred             EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence            9996  899999999999999999999999986  578999999999999999999999999999999999999999999


Q ss_pred             CCCcceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357        154 NNPARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE  228 (252)
Q Consensus       154 ~~~~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~  228 (252)
                      +. +.+++.|+|+|.||+++     .+|.+||++.+|+|+.+++|+|..|....+        ..|++|++||.+.|+|+
T Consensus       376 ~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a~v~l~  446 (478)
T PLN03126        376 GS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRVKMVVE  446 (478)
T ss_pred             CC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEEEEEEE
Confidence            76 56689999999999975     579999999999999999999998864332        24589999999999999


Q ss_pred             eCceEEeeecCCCCCceeEEEEeC
Q psy10357        229 AAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       229 l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +++|+|++.      +|||+|||.
T Consensus       447 ~~~Pi~~~~------~~RfilR~~  464 (478)
T PLN03126        447 LIVPVACEQ------GMRFAIREG  464 (478)
T ss_pred             ECCeEEEcc------CCEEEEecC
Confidence            999999986      689999984

>PRK12735 elongation factor Tu; Reviewed

Probab=100.00  E-value=1.4e-40  Score=301.86  Aligned_cols=224  Identities=23%  Similarity=0.324  Sum_probs=197.7

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF   80 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~   80 (252)
                      +.++.++..+++.+++ ..++++|+|+||++|+|..     ..++||.+ ++|+++|+. +|.|.++.++||||+|+++|
T Consensus       148 ~~~~~ei~~~l~~~~~-~~~~~~ii~~Sa~~g~n~~-----~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f  221 (396)
T PRK12735        148 ELVEMEVRELLSKYDF-PGDDTPIIRGSALKALEGD-----DDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVF  221 (396)
T ss_pred             HHHHHHHHHHHHHcCC-CcCceeEEecchhccccCC-----CCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEE
Confidence            4456678888887775 4467999999999999962     45899975 899999987 67788888999999999999


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +  |.|++++|+|++|.+++||+|.++|.  ++.++|++|+++++++++|.|||+|+++|++++..++++|++||+++. 
T Consensus       222 ~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~-  300 (396)
T PRK12735        222 SISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGS-  300 (396)
T ss_pred             ecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCC-
Confidence            5  89999999999999999999999997  478999999999999999999999999999999999999999999875 


Q ss_pred             cceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357        157 ARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG  231 (252)
Q Consensus       157 ~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~  231 (252)
                      +.+++.|+|+|.+|++     +.+|.+||++++|+|+.+++|+|...             .++++|++|+.+.|+|++++
T Consensus       301 ~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~l~~~~  367 (396)
T PRK12735        301 IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-------------EGVEMVMPGDNVKMTVELIA  367 (396)
T ss_pred             CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-------------CCCceeCCCCEEEEEEEECc
Confidence            5678999999999997     46799999999999999999997421             13578999999999999999


Q ss_pred             eEEeeecCCCCCceeEEEEeC
Q psy10357        232 VICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       232 ~i~~~~~~~~~~lgrfilrd~  252 (252)
                      |+|++.+      |||+|||.
T Consensus       368 p~~~~~~------~rfilR~~  382 (396)
T PRK12735        368 PIAMEEG------LRFAIREG  382 (396)
T ss_pred             eEEEeEC------CEEEEEcC
Confidence            9999985      79999983

>PRK12736 elongation factor Tu; Reviewed

Probab=100.00  E-value=3.9e-39  Score=292.33  Aligned_cols=222  Identities=23%  Similarity=0.333  Sum_probs=194.9

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF   80 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~   80 (252)
                      |.++.++..+|+.+++ +.+++||+|+||++|.+.       ..+||.+ ++|++.|+. +|.|.++.++||||+|+++|
T Consensus       148 ~~i~~~i~~~l~~~~~-~~~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~  219 (394)
T PRK12736        148 ELVEMEVRELLSEYDF-PGDDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVF  219 (394)
T ss_pred             HHHHHHHHHHHHHhCC-CcCCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEE
Confidence            3456688888888876 556789999999999642       2479965 889998876 77788888999999999999


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +  |.|++++|+|++|.|++||.|.++|.  ++.++|+||+++++++++|.|||+|+++|++++..++++|++||+++. 
T Consensus       220 ~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~-  298 (394)
T PRK12736        220 TITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGS-  298 (394)
T ss_pred             ecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCC-
Confidence            6  89999999999999999999999998  678999999999999999999999999999998899999999999875 


Q ss_pred             cceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357        157 ARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG  231 (252)
Q Consensus       157 ~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~  231 (252)
                      +.+++.|+|++.+|++     +.++.+||++++|+|+.++.|+|..             ..++++|++|+.+.|+|++++
T Consensus       299 ~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~l~~~~  365 (394)
T PRK12736        299 IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTITVELIH  365 (394)
T ss_pred             CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEEEEECc
Confidence            4567999999999987     4679999999999999999998742             123578999999999999999


Q ss_pred             eEEeeecCCCCCceeEEEEeC
Q psy10357        232 VICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       232 ~i~~~~~~~~~~lgrfilrd~  252 (252)
                      |+|++.+      +||+|||.
T Consensus       366 p~~~~~~------~rfilR~~  380 (394)
T PRK12736        366 PIAMEQG------LKFAIREG  380 (394)
T ss_pred             eEEEeeC------CEEEEecC
Confidence            9999985      69999984

>TIGR00485 EF-Tu translation elongation factor TU

Probab=100.00  E-value=1.5e-38  Score=288.59  Aligned_cols=221  Identities=23%  Similarity=0.343  Sum_probs=193.5

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      .++.++..+++.+++ ...++|++|+||++|.+.       ..+||.+ ++|+++|+. +|.|.++.++||||+|+++|+
T Consensus       149 ~~~~~i~~~l~~~~~-~~~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~  220 (394)
T TIGR00485       149 LVEMEVRELLSEYDF-PGDDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFS  220 (394)
T ss_pred             HHHHHHHHHHHhcCC-CccCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence            355678888888775 456689999999999752       2479974 899999887 466788889999999999996


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA  157 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~  157 (252)
                        |.|++++|+|++|.|++||.|.++|.  ++.++|++|+.++.++++|.|||+|+++|++++..++++|++||+++. +
T Consensus       221 ~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~-~  299 (394)
T TIGR00485       221 ITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGS-I  299 (394)
T ss_pred             eCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCC-C
Confidence              88999999999999999999999985  678999999999999999999999999999988889999999999865 4


Q ss_pred             ceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357        158 RTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV  232 (252)
Q Consensus       158 ~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~  232 (252)
                      .+++.|+|+|.+|++     +.++..||++.+|+|+.++.|++..+             ..|++|++|+.+.|+|++++|
T Consensus       300 ~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~~~~~~p  366 (394)
T TIGR00485       300 KPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEMVMPGDNVKMTVELISP  366 (394)
T ss_pred             CcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcceeCCCCEEEEEEEECce
Confidence            567999999999997     36899999999999999999998631             135789999999999999999


Q ss_pred             EEeeecCCCCCceeEEEEeC
Q psy10357        233 ICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       233 i~~~~~~~~~~lgrfilrd~  252 (252)
                      +|++++      +||+|||.
T Consensus       367 ~~~~~~------~rfilR~~  380 (394)
T TIGR00485       367 IALEQG------MRFAIREG  380 (394)
T ss_pred             EEEeEC------CEEEEecC
Confidence            999984      79999983

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN03127 Elongation factor Tu; Provisional

Probab=100.00  E-value=3.1e-38  Score=289.53  Aligned_cols=224  Identities=21%  Similarity=0.289  Sum_probs=191.9

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc-
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      .++.+++.+++.+++ ..+++||+|+||+++.+-.+.    ...|+.+++|+++|+. +|.|.+..++||||+|+++|+ 
T Consensus       198 ~i~~~i~~~l~~~~~-~~~~vpiip~Sa~sa~~g~n~----~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v  272 (447)
T PLN03127        198 LVEMELRELLSFYKF-PGDEIPIIRGSALSALQGTND----EIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSI  272 (447)
T ss_pred             HHHHHHHHHHHHhCC-CCCcceEEEeccceeecCCCc----ccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEc
Confidence            455567777777665 456899999999865322221    2357778899999887 677888889999999999996 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecC----CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPN----RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~----~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                       |.|++++|+|++|.+++||.|.++|.    +..++|+||+.+++++++|.|||+|+++|++++..++++|++||+++. 
T Consensus       273 ~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~-  351 (447)
T PLN03127        273 QGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGS-  351 (447)
T ss_pred             CCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCC-
Confidence             89999999999999999999999975    468999999999999999999999999999999999999999999864 


Q ss_pred             cceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357        157 ARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG  231 (252)
Q Consensus       157 ~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~  231 (252)
                      +..+++|+|+|.+|+++     .++.+||++++|+|+.+++|+|...             .+|++|++||.+.|+|++++
T Consensus       352 ~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~~~~l~~gd~a~v~l~~~~  418 (447)
T PLN03127        352 IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-------------EGVKMVMPGDNVTAVFELIS  418 (447)
T ss_pred             CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEec-------------cCccccCCCCEEEEEEEECc
Confidence            67899999999999973     6799999999999999999998421             24588999999999999999


Q ss_pred             eEEeeecCCCCCceeEEEEeC
Q psy10357        232 VICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       232 ~i~~~~~~~~~~lgrfilrd~  252 (252)
                      |+|++.+      |||+|||.
T Consensus       419 p~~le~g------~RfilR~~  433 (447)
T PLN03127        419 PVPLEPG------QRFALREG  433 (447)
T ss_pred             eEEEeeC------CEEEEEeC
Confidence            9999974      79999983

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=100.00  E-value=5.8e-33  Score=254.56  Aligned_cols=204  Identities=20%  Similarity=0.261  Sum_probs=176.3

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhc-cCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFID-ALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~-~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      .++.+++.+++...   ..++++||+||++|+|+..              |+++|+ .+|.|.++.+.||||+|+++|. 
T Consensus       191 ~~~~ei~~~l~~~~---~~~~~iipVSA~~G~nI~~--------------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V  253 (460)
T PTZ00327        191 DQYEEIRNFVKGTI---ADNAPIIPISAQLKYNIDV--------------VLEYICTQIPIPKRDLTSPPRMIVIRSFDV  253 (460)
T ss_pred             HHHHHHHHHHHhhc---cCCCeEEEeeCCCCCCHHH--------------HHHHHHhhCCCCCCCCCCCcEEEEEEEEee
Confidence            45667777666543   3678999999999999954              788887 6888888889999999999883 


Q ss_pred             -C--------CCeEEEEEEEEeeeecCCEEEEecCC-------------ceEEEEEEEeCCccceeecCCCeEEEEEe--
Q psy10357         82 -D--------MGTVVMGKVESGEAKKGQSLVLMPNR-------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK--  137 (252)
Q Consensus        82 -g--------~G~vv~G~v~~G~l~~gd~v~i~p~~-------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~--  137 (252)
                       +        .|+|++|+|.+|++++||.|.++|++             ..++|+||+.++.++++|.|||+|+++|+  
T Consensus       254 ~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld  333 (460)
T PTZ00327        254 NKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTID  333 (460)
T ss_pred             cccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccC
Confidence             2        69999999999999999999999975             46899999999999999999999999998  


Q ss_pred             -eeCCCCccceeEEeCCCCCcceecEEEEEEEEeccC--------------CcCCCCCEEEEEEEeeEEEEEEEEEEEee
Q psy10357        138 -GIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK--------------SIICAGYSAVMHIHCVAEEVNVKALICLI  202 (252)
Q Consensus       138 -~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~--------------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~  202 (252)
                       +++..++.||++|++++.+++.++.|+|++.|+++.              .++.+|+++.+|+++.++.|+|..+.   
T Consensus       334 ~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~---  410 (460)
T PTZ00327        334 PTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK---  410 (460)
T ss_pred             CCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeC---
Confidence             678889999999999987777788999999999772              67999999999999999999998752   


Q ss_pred             cccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357        203 DKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       203 d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd  251 (252)
                       .          .     .  .++|++++|+|+...+      ||+||+
T Consensus       411 -~----------~-----~--~~~l~l~~P~~~~~gd------r~ilr~  435 (460)
T PTZ00327        411 -D----------D-----G--IAKLELTTPVCTSVGE------KIALSR  435 (460)
T ss_pred             -C----------C-----e--EEEEEECccEeccCCC------EEEEEe
Confidence             1          0     0  6678899999999876      999985

>KOG0460|consensus

Probab=100.00  E-value=1.3e-34  Score=247.97  Aligned_cols=227  Identities=23%  Similarity=0.356  Sum_probs=198.2

Q ss_pred             CchhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeE
Q psy10357          1 MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEK   79 (252)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~   79 (252)
                      |.|+++-|++++|++.+| +.++.|+|.-||++-.--.++.    ..--.-.-|++++|+ ||.|.|+.++||.|+|.++
T Consensus       188 ~leLVEmE~RElLse~gf-~Gd~~PvI~GSAL~ALeg~~pe----ig~~aI~kLldavDsyip~P~R~~~~pFl~pie~v  262 (449)
T KOG0460|consen  188 MLELVEMEIRELLSEFGF-DGDNTPVIRGSALCALEGRQPE----IGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDV  262 (449)
T ss_pred             HHHHHHHHHHHHHHHcCC-CCCCCCeeecchhhhhcCCCcc----ccHHHHHHHHHHHhccCCCcccccCCCceeehhhe
Confidence            579999999999999997 9999999999998863222221    010111237888887 9999999999999999999


Q ss_pred             Ec--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357         80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN  155 (252)
Q Consensus        80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~  155 (252)
                      |+  |+|+|++|++++|.+++||++.+.-.+  .+.+|..|+++++.+++|.|||++++.|+|+..++++||+++|.|.+
T Consensus       263 fsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs  342 (449)
T KOG0460|consen  263 FSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS  342 (449)
T ss_pred             eeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence            97  999999999999999999999998766  57899999999999999999999999999999999999999999998


Q ss_pred             CcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC
Q psy10357        156 PARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA  230 (252)
Q Consensus       156 ~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~  230 (252)
                       .++++.|+|++++|..     .+++..+|++.+|+.|+.+.+++.-.    +.         -+++.+|+.+.+++.|-
T Consensus       343 -vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~----~~---------~~mvMPGe~~~~~~~Li  408 (449)
T KOG0460|consen  343 -VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIP----PE---------KEMVMPGENVKVEVTLI  408 (449)
T ss_pred             -ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEcc----Ch---------HhcccCCCCeEEEEEEe
Confidence             8899999999999974     46799999999999999999998642    11         17899999999999999


Q ss_pred             ceEEeeecCCCCCceeEEEEeC
Q psy10357        231 GVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       231 ~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +|++++...      ||.||+.
T Consensus       409 ~pm~le~Gq------rFtiReG  424 (449)
T KOG0460|consen  409 RPMPLEKGQ------RFTLREG  424 (449)
T ss_pred             cccccCCCc------eeeEccC
Confidence            999999987      9999974

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.98  E-value=5.9e-31  Score=239.78  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=169.0

Q ss_pred             HHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--C-
Q psy10357          7 YAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--D-   82 (252)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--g-   82 (252)
                      .++..+++...   ..+++++|+||++|+|+.+              |++.|.. ++.|.+..++||||+|+++|+  | 
T Consensus       162 ~~i~~~l~~~~---~~~~~ii~vSA~~g~gI~~--------------L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~  224 (411)
T PRK04000        162 EQIKEFVKGTV---AENAPIIPVSALHKVNIDA--------------LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKP  224 (411)
T ss_pred             HHHHHHhcccc---CCCCeEEEEECCCCcCHHH--------------HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCC
Confidence            44555554332   2467999999999999965              6677766 787888889999999999994  3 


Q ss_pred             -------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---eeC
Q psy10357         83 -------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---GIE  140 (252)
Q Consensus        83 -------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~~  140 (252)
                             .|+|++|+|++|.+++||.|.++|+++            .++|+||+.++.++++|.|||+|+++|+   +++
T Consensus       225 g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~  304 (411)
T PRK04000        225 GTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLT  304 (411)
T ss_pred             CccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCC
Confidence                   477999999999999999999999864            5799999999999999999999999996   667


Q ss_pred             CCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccc
Q psy10357        141 EDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSK  211 (252)
Q Consensus       141 ~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~  211 (252)
                      ..++++|++||+++.+++.++.|+|++.|+++         +.+|.+|+++.+|+|+.+++|+|..+.            
T Consensus       305 ~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~------------  372 (411)
T PRK04000        305 KADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR------------  372 (411)
T ss_pred             HHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcC------------
Confidence            78899999999998888888999999999987         678999999999999999999998761            


Q ss_pred             cCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357        212 TRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL  249 (252)
Q Consensus       212 ~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil  249 (252)
                              ++  .++|.+.+|+|+...+      ||+|
T Consensus       373 --------~~--~~~~~l~~p~~~~~g~------r~~~  394 (411)
T PRK04000        373 --------KD--EAEVKLKRPVCAEEGD------RVAI  394 (411)
T ss_pred             --------Cc--EEEEEECCcEecCCCC------EEEE
Confidence                    12  4567789999998876      8888

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.98  E-value=2.7e-31  Score=251.80  Aligned_cols=199  Identities=19%  Similarity=0.230  Sum_probs=171.2

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      .+..++..+++..+.   ++.+++|+||++|+|+.+              |.+.|+.++.+.+..+.||||+|+++|+  
T Consensus       124 ~v~~ei~~~l~~~~~---~~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~  186 (614)
T PRK10512        124 EVRRQVKAVLREYGF---AEAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFTVK  186 (614)
T ss_pred             HHHHHHHHHHHhcCC---CCCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEeccC
Confidence            345666667666654   457899999999999965              6788888877777788999999999995  


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEee-eCCCCccceeEEeCCCCCccee
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKG-IEEDDVSPGFVLCDPNNPARTA  160 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~  160 (252)
                      |.|+|++|+|.+|++++||+|.++|.+..++|++|++++.++++|.|||+|+++|++ ++..+++|||+||+++. +..+
T Consensus       187 G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~-~~~~  265 (614)
T PRK10512        187 GAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAP-PEPF  265 (614)
T ss_pred             CCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCC-Cccc
Confidence            899999999999999999999999999999999999999999999999999999997 88899999999998853 5566


Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL  240 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~  240 (252)
                      ..+.+.   +....++++|+++.+|+|+.++.|+|..+                      +.+.+++.+++|+++...+ 
T Consensus       266 ~~~~~~---l~~~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~gd-  319 (614)
T PRK10512        266 TRVIVE---LQTHTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLADND-  319 (614)
T ss_pred             eeEEEE---EcCCccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccCCC-
Confidence            666544   44456799999999999999999999765                      1257889999999988876 


Q ss_pred             CCCceeEEEEe
Q psy10357        241 FPQMGRFTLRD  251 (252)
Q Consensus       241 ~~~lgrfilrd  251 (252)
                           ||+||+
T Consensus       320 -----r~ilr~  325 (614)
T PRK10512        320 -----RLVLRD  325 (614)
T ss_pred             -----EEEEEe
Confidence                 999997

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.97  E-value=1.6e-30  Score=236.88  Aligned_cols=199  Identities=19%  Similarity=0.276  Sum_probs=168.9

Q ss_pred             HHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--C
Q psy10357          6 KYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--D   82 (252)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--g   82 (252)
                      +.++..+++..+   ..+++++|+||++|+|+.+              |++.|.. ++.|.++.+.||||+|+++|.  +
T Consensus       156 ~~~i~~~l~~~~---~~~~~ii~vSA~~g~gi~~--------------L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~  218 (406)
T TIGR03680       156 YEEIKEFVKGTV---AENAPIIPVSALHNANIDA--------------LLEAIEKFIPTPERDLDKPPLMYVARSFDVNK  218 (406)
T ss_pred             HHHHHhhhhhcc---cCCCeEEEEECCCCCChHH--------------HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecC
Confidence            345555555432   2567999999999999965              6787876 787888889999999999993  3


Q ss_pred             --------CCeEEEEEEEEeeeecCCEEEEecCC------------ceEEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357         83 --------MGTVVMGKVESGEAKKGQSLVLMPNR------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK---GI  139 (252)
Q Consensus        83 --------~G~vv~G~v~~G~l~~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~  139 (252)
                              .|+|++|+|++|+|++||.|.++|++            ..++|+||+.++.++++|.|||+|+++|+   ++
T Consensus       219 ~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i  298 (406)
T TIGR03680       219 PGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPAL  298 (406)
T ss_pred             CCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCC
Confidence                    57899999999999999999999985            25799999999999999999999999984   67


Q ss_pred             CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCccc
Q psy10357        140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKS  210 (252)
Q Consensus       140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~  210 (252)
                      +..|+.+|++||+++.++..++.|+|++.|+.+         +.+|.+|+++.+|+|+.+++|+|..+.           
T Consensus       299 ~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~-----------  367 (406)
T TIGR03680       299 TKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSAR-----------  367 (406)
T ss_pred             CHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcC-----------
Confidence            788999999999998777788999999999975         368999999999999999999998752           


Q ss_pred             ccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357        211 KTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL  249 (252)
Q Consensus       211 ~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil  249 (252)
                               ++  .++|.+.+|+|+...+      ||+|
T Consensus       368 ---------~~--~~~l~l~~p~~~~~g~------r~~~  389 (406)
T TIGR03680       368 ---------KD--EIEVKLKRPVCAEEGD------RVAI  389 (406)
T ss_pred             ---------Cc--EEEEEECCcEEcCCCC------EEEE
Confidence                     11  3677789999998876      8887

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.97  E-value=6.1e-31  Score=228.63  Aligned_cols=194  Identities=29%  Similarity=0.511  Sum_probs=176.2

Q ss_pred             eeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-CCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357         23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-KMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG   99 (252)
Q Consensus        23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g   99 (252)
                      -+|++.+|+.+|+|++-              |.+.+..+|...+ +...||+|.||+.|.  |.|+++.|+|.+|.+..|
T Consensus       313 vvPi~~tSsVTg~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~g  378 (527)
T COG5258         313 VVPIFYTSSVTGEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVG  378 (527)
T ss_pred             eEEEEEEecccCccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccC
Confidence            68999999999999853              6778888886644 556899999999996  999999999999999999


Q ss_pred             CEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEEeccCCc
Q psy10357        100 QSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSI  175 (252)
Q Consensus       100 d~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~  175 (252)
                      |+|++.|..    +.++|+||++|+..+++|.||+++++.++|+..++++|||+|+.. .+|++.++|+|++.+|.||+.
T Consensus       379 d~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~  457 (527)
T COG5258         379 DTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTT  457 (527)
T ss_pred             CEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEEEeCCcE
Confidence            999999977    789999999999999999999999999999999999999999988 568999999999999999999


Q ss_pred             CCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC-ceEEeeecCCCCCceeEEEEe
Q psy10357        176 ICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA-GVICLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       176 i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~-~~i~~~~~~~~~~lgrfilrd  251 (252)
                      |+.||.+++|.-+.+..++++.+    |.          .+|++||...+++.+. +|=.++..+      +|++|+
T Consensus       458 I~aGye~v~H~etI~e~~~f~~i----d~----------~~L~~GD~g~vr~~fkyrP~~v~eGQ------~fvFRe  514 (527)
T COG5258         458 IRAGYEPVFHYETIREAVYFEEI----DK----------GFLMPGDRGVVRMRFKYRPHHVEEGQ------KFVFRE  514 (527)
T ss_pred             EecCceeeeEeeEeeheeEEEEc----cc----------ccccCCCcceEEEEEEeCchhhccCc------EEEEec
Confidence            99999999999999999988774    43          7899999999999998 888888754      788876

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.4e-30  Score=219.70  Aligned_cols=224  Identities=23%  Similarity=0.337  Sum_probs=193.1

Q ss_pred             CchhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEee
Q psy10357          1 MRESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVE   78 (252)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~   78 (252)
                      |.|++.-|++.+|++.++ +.++.|++--||+.--.-       ..+|... .-|+++++. +|.|.|+.++||+|+|.|
T Consensus       146 llelVemEvreLLs~y~f-~gd~~Pii~gSal~ale~-------~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEd  217 (394)
T COG0050         146 LLELVEMEVRELLSEYGF-PGDDTPIIRGSALKALEG-------DAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVED  217 (394)
T ss_pred             HHHHHHHHHHHHHHHcCC-CCCCcceeechhhhhhcC-------CcchHHHHHHHHHHHHhcCCCCCCccccccccccee
Confidence            358899999999999997 778999999999875321       1224432 247777766 899999999999999999


Q ss_pred             EEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      +|+  |+|++++|+|++|.+++||.+.+.-..  ++..|.+|+++.+..+++.|||+|++.|+++.+.+++||++|+.|.
T Consensus       218 vfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg  297 (394)
T COG0050         218 VFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG  297 (394)
T ss_pred             eEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence            997  999999999999999999999987665  5779999999999999999999999999999999999999999998


Q ss_pred             CCcceecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEe
Q psy10357        155 NPARTARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEA  229 (252)
Q Consensus       155 ~~~~~~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l  229 (252)
                      . ..+.++|.|+++++..     .++...||++.+|..+..+.+.+..-             .....+.+||.+.+.++|
T Consensus       298 s-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~-------------eg~emvmpgdnv~~~veL  363 (394)
T COG0050         298 S-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLP-------------EGVEMVMPGDNVKMVVEL  363 (394)
T ss_pred             c-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEecc-------------CCcceecCCCceEEEEEE
Confidence            7 7889999999999975     45789999999999999988754321             123789999999999999


Q ss_pred             CceEEeeecCCCCCceeEEEEeC
Q psy10357        230 AGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       230 ~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      ..||++|...      ||.+|..
T Consensus       364 i~pia~e~G~------rFaIreG  380 (394)
T COG0050         364 IHPIAMEEGL------RFAIREG  380 (394)
T ss_pred             eeeeecCCCC------EEEEEeC
Confidence            9999999987      9999863

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=8e-29  Score=219.68  Aligned_cols=208  Identities=20%  Similarity=0.248  Sum_probs=170.7

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCC-CCCCCCCCCeeEEEeeEEc--
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALP-SLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~-~~~~~~~~p~~~~I~~~~~--   81 (252)
                      ++..+.++++.+-   .++.+++++|+.+|+|+.++              -+.|..++ .+.++.++|||++||+.|+  
T Consensus       121 ~e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~L--------------k~~l~~L~~~~e~d~~~~fri~IDraFtVK  183 (447)
T COG3276         121 IEQKIKQILADLS---LANAKIFKTSAKTGRGIEEL--------------KNELIDLLEEIERDEQKPFRIAIDRAFTVK  183 (447)
T ss_pred             HHHHHHHHHhhcc---cccccccccccccCCCHHHH--------------HHHHHHhhhhhhhccCCceEEEEeeEEEec
Confidence            4455566666555   37789999999999999875              45555544 4678899999999999995  


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceec
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTAR  161 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~  161 (252)
                      |.||||+|++.+|++++||++++.|.++.++|||||.+++++++|.||+||+|+|++++.++++||++|++++. ..+++
T Consensus       184 GvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~-~~v~~  262 (447)
T COG3276         184 GVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP-LEVTT  262 (447)
T ss_pred             cccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCC-CCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875 47788


Q ss_pred             EEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeee
Q psy10357        162 VFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ  237 (252)
Q Consensus       162 ~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~  237 (252)
                      .+.+.+.|.+. ..++.+++.+++|.|..+++|++..+...       ......+.+..++...+.+..+.+.....
T Consensus       263 ~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~  332 (447)
T COG3276         263 RLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-------AELNLVKPIALGDNDRLVLRDNSAVIKLA  332 (447)
T ss_pred             EEEEEEEeccccccccCCCceEEEEEeccccceEeeecccc-------ceeeeecccccccCceEEEEcccceeeec
Confidence            88888888743 55689999999999999999998765321       00011145666666677777777766554

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.96  E-value=3.1e-28  Score=230.19  Aligned_cols=199  Identities=21%  Similarity=0.297  Sum_probs=156.9

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D   82 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g   82 (252)
                      +..++..+++..++  ..+++++|+||++|+|+.++.  .        .|.+.++.++.+  ..+.||||+|+++|+  |
T Consensus       124 ~~~ei~~~l~~~~~--~~~~~ii~vSA~tG~GI~eL~--~--------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~G  189 (581)
T TIGR00475       124 TEMFMKQILNSYIF--LKNAKIFKTSAKTGQGIGELK--K--------ELKNLLESLDIK--RIQKPLRMAIDRAFKVKG  189 (581)
T ss_pred             HHHHHHHHHHHhCC--CCCCcEEEEeCCCCCCchhHH--H--------HHHHHHHhCCCc--CcCCCcEEEEEEEEecCC
Confidence            45566677766554  236799999999999998763  1        244555555433  257899999999995  8


Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV  162 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~  162 (252)
                      .|++++|+|.+|++++||+|.++|.++.++|++|+.+++++++|.|||+|+++|++++..+++||++++++..+   +..
T Consensus       190 ~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~~~  266 (581)
T TIGR00475       190 AGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---KLR  266 (581)
T ss_pred             cEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---Cce
Confidence            99999999999999999999999999999999999999999999999999999999999999999888876542   222


Q ss_pred             EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357        163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP  242 (252)
Q Consensus       163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~  242 (252)
                      +.+.+..   ..++.+|+.+.+|+|+.++.|++..+    |.+                  .+++.+++|+++...+   
T Consensus       267 ~~~~~~~---~~~l~~~~~~~~~~gt~~~~~~i~~l----~~~------------------~~~l~l~~P~~~~~gd---  318 (581)
T TIGR00475       267 VVVKFIA---EVPLLELQPYHIAHGMSVTTGKISLL----DKG------------------IALLTLDAPLILAKGD---  318 (581)
T ss_pred             EEEEEEc---CCccCCCCeEEEEEeceEEEEEEEEc----cCc------------------EEEEEECCceecCCCC---
Confidence            3333222   35689999999999999999998654    321                  4566677777777655   


Q ss_pred             CceeEEEEe
Q psy10357        243 QMGRFTLRD  251 (252)
Q Consensus       243 ~lgrfilrd  251 (252)
                         ||++|+
T Consensus       319 ---~~i~r~  324 (581)
T TIGR00475       319 ---KLVLRD  324 (581)
T ss_pred             ---EEEEEe
Confidence               777775

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0463|consensus

Probab=99.91  E-value=3e-24  Score=186.80  Aligned_cols=185  Identities=22%  Similarity=0.363  Sum_probs=157.7

Q ss_pred             ccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC-CCCCCCCeeEEEeeEEc--CCCeEEEEEEEE
Q psy10357         17 WTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL-NRKMDGPFLMPVVEKFK--DMGTVVMGKVES   93 (252)
Q Consensus        17 ~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~-~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~   93 (252)
                      .+....-+|++.+|..+|+|+.-              |.-+|+-++.. +...+.|..|.|||+|.  |.|++++|+..+
T Consensus       326 NF~Ser~CPIFQvSNVtG~NL~L--------------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~  391 (641)
T KOG0463|consen  326 NFPSERVCPIFQVSNVTGTNLPL--------------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLS  391 (641)
T ss_pred             cCccccccceEEeccccCCChHH--------------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceee
Confidence            34446678999999999999853              33455555433 34567899999999995  999999999999


Q ss_pred             eeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEEEE
Q psy10357         94 GEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVI  169 (252)
Q Consensus        94 G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~  169 (252)
                      |.|+.+|.+.+.|..    .+..||||+..+-++..+..|+...+.|+.+...++++||++.++.-.|.++++|+|+|.+
T Consensus       392 GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV  471 (641)
T KOG0463|consen  392 GTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV  471 (641)
T ss_pred             eeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE
Confidence            999999999999976    6889999999999999999999999999999999999999999999889999999999999


Q ss_pred             eccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEe
Q psy10357        170 LEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEA  229 (252)
Q Consensus       170 ~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l  229 (252)
                      ++|++.|.+.|+..+|||+.++.|.|.+    +++          +.|..||.+.|.+.+
T Consensus       472 LHHPTTIsprYQAMvHcGSiRQTAtivs----M~k----------dcLRTGDka~V~FrF  517 (641)
T KOG0463|consen  472 LHHPTTISPRYQAMVHCGSIRQTATIVS----MGK----------DCLRTGDKAKVQFRF  517 (641)
T ss_pred             EecCCccCcchhheeeeccccceeeeee----cCh----------hhhhcCCcceEEEEE
Confidence            9999999999999999999999998765    343          445555666666554

>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages

Probab=99.88  E-value=2.3e-22  Score=145.98  Aligned_cols=87  Identities=29%  Similarity=0.515  Sum_probs=83.3

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      ++||||+|+++|+  |.|++++|+|++|.++.||+|.++|++..++|+||+.+++++++|.|||+|+|.|++++..++++
T Consensus         2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~   81 (91)
T cd03693           2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR   81 (91)
T ss_pred             CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence            5799999999996  78999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             eeEEeCCCC
Q psy10357        147 GFVLCDPNN  155 (252)
Q Consensus       147 G~vl~~~~~  155 (252)
                      ||+||++++
T Consensus        82 G~vl~~~~~   90 (91)
T cd03693          82 GDVAGDSKN   90 (91)
T ss_pred             cCEEccCCC
Confidence            999999865

EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.

>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu

Probab=99.87  E-value=9.6e-22  Score=147.26  Aligned_cols=94  Identities=66%  Similarity=0.998  Sum_probs=89.0

Q ss_pred             eecEEEEEEEEeccC-CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeee
Q psy10357        159 TARVFDAQIVILEHK-SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQ  237 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~-~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~  237 (252)
                      .+++|+|+|.||+++ ++|.+||++.+|+|+.+++|+|.+|.+.+|.++|+..+.+|++|++||.|.|+|++++|+|+|+
T Consensus         2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~   81 (108)
T cd03704           2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK   81 (108)
T ss_pred             cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence            467899999999998 8899999999999999999999999999999888877778999999999999999999999999


Q ss_pred             cCCCCCceeEEEEeC
Q psy10357        238 FKLFPQMGRFTLRDE  252 (252)
Q Consensus       238 ~~~~~~lgrfilrd~  252 (252)
                      |++++.||||+|||+
T Consensus        82 ~~~~~~lGRf~lR~~   96 (108)
T cd03704          82 FEDFPQLGRFTLRDE   96 (108)
T ss_pred             cccCCCcccEEEEeC
Confidence            999999999999985

eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.

>cd03705 EF1_alpha_III Domain III of EF-1

Probab=99.86  E-value=2.5e-21  Score=144.04  Aligned_cols=94  Identities=30%  Similarity=0.610  Sum_probs=89.0

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .+++|+|+|.||+++.++.+||++.+|+++.+++|+|.+|.+.+|.++++..+..|++|++||.+.|+|.+++|+|+|+|
T Consensus         2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~   81 (104)
T cd03705           2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF   81 (104)
T ss_pred             cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence            36789999999999888999999999999999999999999999999998776778999999999999999999999999


Q ss_pred             CCCCCceeEEEEeC
Q psy10357        239 KLFPQMGRFTLRDE  252 (252)
Q Consensus       239 ~~~~~lgrfilrd~  252 (252)
                      ++++.||||+|||+
T Consensus        82 ~~~~~lgrf~lrd~   95 (104)
T cd03705          82 SEYPPLGRFAVRDM   95 (104)
T ss_pred             ccCCCccCEEEEeC
Confidence            99999999999985

Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).

>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha

Probab=99.86  E-value=5.7e-21  Score=142.80  Aligned_cols=94  Identities=31%  Similarity=0.496  Sum_probs=89.0

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .++.|+|+|.|++++.++.+||++.+|+|+..++|+|.+|.+.+|.+|++..+..|++|++||.|.|+|.+++|+|+|+|
T Consensus         2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~   81 (107)
T cd04093           2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF   81 (107)
T ss_pred             cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence            46889999999998889999999999999999999999999999999998776778999999999999999999999999


Q ss_pred             CCCCCceeEEEEeC
Q psy10357        239 KLFPQMGRFTLRDE  252 (252)
Q Consensus       239 ~~~~~lgrfilrd~  252 (252)
                      ++++.||||+|||+
T Consensus        82 ~~~~~~Grfilr~~   95 (107)
T cd04093          82 KDNKELGRVVLRRD   95 (107)
T ss_pred             ccCCCcceEEEEcC
Confidence            99999999999974

This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.

>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3)

Probab=99.86  E-value=3e-21  Score=137.43  Aligned_cols=82  Identities=57%  Similarity=1.059  Sum_probs=79.3

Q ss_pred             CeeEEEeeEEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE
Q psy10357         71 PFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL  150 (252)
Q Consensus        71 p~~~~I~~~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl  150 (252)
                      ||||+|+++|+..|++++|+|++|.+++||+|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++|
T Consensus         1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl   80 (82)
T cd04089           1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL   80 (82)
T ss_pred             CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence            79999999999779999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             eC
Q psy10357        151 CD  152 (252)
Q Consensus       151 ~~  152 (252)
                      |+
T Consensus        81 ~~   82 (82)
T cd04089          81 CS   82 (82)
T ss_pred             eC
Confidence            85

In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li

>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3)

Probab=99.85  E-value=6.8e-21  Score=135.89  Aligned_cols=82  Identities=52%  Similarity=0.935  Sum_probs=78.5

Q ss_pred             CeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357         71 PFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV  149 (252)
Q Consensus        71 p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v  149 (252)
                      ||||+|+++|+ ..|++++|+|++|++++||+|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++
T Consensus         1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v   80 (83)
T cd03698           1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV   80 (83)
T ss_pred             CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence            79999999996 38999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EeC
Q psy10357        150 LCD  152 (252)
Q Consensus       150 l~~  152 (252)
                      ||+
T Consensus        81 l~~   83 (83)
T cd03698          81 LCS   83 (83)
T ss_pred             EeC
Confidence            985

In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM

>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu

Probab=99.84  E-value=2.3e-20  Score=138.59  Aligned_cols=91  Identities=18%  Similarity=0.271  Sum_probs=84.5

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .++.|+|+|.||+. .++.+|+.+.+|+|+.+++|+|++|.+++|.++++..  .|++|+.||.|.|+|++++|+|+|+|
T Consensus         2 ~~~~f~a~i~~l~~-~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~--~~~~l~~n~~a~v~i~~~~pi~~d~~   78 (103)
T cd04095           2 VSDQFAATLVWMDE-EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHE--AADTLELNDIGRVELSLSKPLAFDPY   78 (103)
T ss_pred             ccceeeEEEEEecC-cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCcc--CCCEECCCCeEEEEEEeCCccEecch
Confidence            46789999999994 4799999999999999999999999999999988754  67999999999999999999999999


Q ss_pred             CCCCCceeEEEEeC
Q psy10357        239 KLFPQMGRFTLRDE  252 (252)
Q Consensus       239 ~~~~~lgrfilrd~  252 (252)
                      ++++.||||+|+|+
T Consensus        79 ~~~~~~GrfiliD~   92 (103)
T cd04095          79 RENRATGSFILIDR   92 (103)
T ss_pred             hhCCCcceEEEEEC
Confidence            99999999999874

Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s

>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase

Probab=99.82  E-value=5.5e-20  Score=132.29  Aligned_cols=81  Identities=30%  Similarity=0.487  Sum_probs=77.1

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCcc
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVS  145 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~  145 (252)
                      |+|+|+++|+  |.|++++|+|++|.+++||++.++|.+    ..++|++|+.++.++++|.|||+++++|++++..+++
T Consensus         1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~   80 (87)
T cd03694           1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR   80 (87)
T ss_pred             CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence            6899999995  889999999999999999999999984    6899999999999999999999999999999999999


Q ss_pred             ceeEEeC
Q psy10357        146 PGFVLCD  152 (252)
Q Consensus       146 ~G~vl~~  152 (252)
                      +|++||+
T Consensus        81 ~G~vl~~   87 (87)
T cd03694          81 KGMVLVS   87 (87)
T ss_pred             CccEEeC
Confidence            9999984

This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.

>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II

Probab=99.82  E-value=4.1e-20  Score=133.03  Aligned_cols=83  Identities=31%  Similarity=0.565  Sum_probs=78.1

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecC--CceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPN--RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      |||+|+++|+  +.|++++|+|++|++++||+|.++|.  +..++|+||+.+++++++|.|||+|+++|++++..+++||
T Consensus         1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG   80 (87)
T cd03697           1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG   80 (87)
T ss_pred             CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence            7999999996  78999999999999999999999997  6789999999999999999999999999999888999999


Q ss_pred             eEEeCCC
Q psy10357        148 FVLCDPN  154 (252)
Q Consensus       148 ~vl~~~~  154 (252)
                      ++||+++
T Consensus        81 ~vl~~~~   87 (87)
T cd03697          81 MVLAKPG   87 (87)
T ss_pred             cEEecCC
Confidence            9999863

Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher

>KOG1143|consensus

Probab=99.82  E-value=5.3e-19  Score=154.04  Aligned_cols=184  Identities=20%  Similarity=0.368  Sum_probs=158.9

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC------CCCCCeeEEEeeEEc--CCCeEEEEEE
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR------KMDGPFLMPVVEKFK--DMGTVVMGKV   91 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~------~~~~p~~~~I~~~~~--g~G~vv~G~v   91 (252)
                      .++.+|++.+|+.+|+++.-              |...|+.+++.-.      -...|..|.|++.|.  ..|.++.|.+
T Consensus       359 s~nivPif~vSsVsGegl~l--------------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~L  424 (591)
T KOG1143|consen  359 SGNIVPIFAVSSVSGEGLRL--------------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGML  424 (591)
T ss_pred             cCCceeEEEEeecCccchhH--------------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccccccee
Confidence            36788999999999999854              3455666654321      235688899999997  7899999999


Q ss_pred             EEeeeecCCEEEEecCC----ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecEEEEEE
Q psy10357         92 ESGEAKKGQSLVLMPNR----TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQI  167 (252)
Q Consensus        92 ~~G~l~~gd~v~i~p~~----~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i  167 (252)
                      .+|.++.|+.+.+.|..    .+.+|-||+.++.++..+.||+...|.|..-|..-+++||++..++..|+.+..|+|++
T Consensus       425 s~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~  504 (591)
T KOG1143|consen  425 SEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANL  504 (591)
T ss_pred             eeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeee
Confidence            99999999999999987    68999999999999999999999999998666677999999999988889999999999


Q ss_pred             EEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeC
Q psy10357        168 VILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAA  230 (252)
Q Consensus       168 ~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~  230 (252)
                      .++-|.+.|..|++..+|+|+.++.|.|+.|...             +.|..|+.|.|.+.+.
T Consensus       505 ~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~-------------d~lrtg~~AvV~f~F~  554 (591)
T KOG1143|consen  505 LLLFHATYICEGFQATVHIGSVRQTAVITHIDDA-------------DCLRTGKWAVVKFCFA  554 (591)
T ss_pred             hhhhhhHhheecceEEEEEcceeeeeeeeeeccc-------------ccccCCceEEEEEEec
Confidence            9999999999999999999999999998887321             5678888888888754

>KOG0461|consensus

Probab=99.81  E-value=4.1e-20  Score=159.51  Aligned_cols=220  Identities=16%  Similarity=0.157  Sum_probs=162.3

Q ss_pred             chhHHHHHHhcccccccccCceeEEEecccccC----CcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEE
Q psy10357          2 RESVKYAVSFWQPKLWTVRQEILLIISPSGQMG----QNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPV   76 (252)
Q Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G----~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I   76 (252)
                      +|....+|++-|+..++  ..++|++++|+..|    +.+.+              |.++|.. +-.|+|+.+.||.|.|
T Consensus       144 i~k~~kk~~KtLe~t~f--~g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd~~gpflm~v  207 (522)
T KOG0461|consen  144 IEKSAKKVRKTLESTGF--DGNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRDEEGPFLMAV  207 (522)
T ss_pred             HHHHHHHHHHHHHhcCc--CCCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcCCCCCeEEEe
Confidence            35667789999999997  56789999999999    44443              6677765 8889999999999999


Q ss_pred             eeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         77 VEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        77 ~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      |++|  +|.|+|.+|+|.+|.++.|+.+.+-..+...+|||+|+++.++.+|.+||++++.+...+..-++||- +|.++
T Consensus       208 DHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRgi-~~~pg  286 (522)
T KOG0461|consen  208 DHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERGI-CGPPG  286 (522)
T ss_pred             eeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhccc-cCCCc
Confidence            9999  59999999999999999999999999999999999999999999999999999999988888899985 36665


Q ss_pred             CCcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCC----------cccccCCceecCCCEE
Q psy10357        155 NPARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG----------EKSKTRPRFVKQDQIA  223 (252)
Q Consensus       155 ~~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg----------~~~~~~~~~l~~g~~~  223 (252)
                      . ..+....-+.+....- .++|..-...++.+|...+.+++.=+ ...|..+.          .+...-|..+.+++..
T Consensus       287 ~-Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff-~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~  364 (522)
T KOG0461|consen  287 T-LKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFF-KDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVI  364 (522)
T ss_pred             c-cceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEe-eccCCcccccccchhhhccccccChhhcCCchhe
Confidence            5 3333333333222211 22344444455555555555554322 11222110          1112245667788888


Q ss_pred             EEEEEeCceEEeeecCC
Q psy10357        224 IMRLEAAGVICLDQFKL  240 (252)
Q Consensus       224 ~v~l~l~~~i~~~~~~~  240 (252)
                      .+=+++++|+.+..|++
T Consensus       365 ~aL~~FEkpv~~P~~s~  381 (522)
T KOG0461|consen  365 QALFSFEKPVFLPEYSN  381 (522)
T ss_pred             eeeeeecccccCccccc
Confidence            88899999999888764

>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu

Probab=99.80  E-value=5.3e-19  Score=125.41  Aligned_cols=79  Identities=28%  Similarity=0.424  Sum_probs=74.5

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV  149 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v  149 (252)
                      |||+|.|+|+  +.|+.++|+|++|.+++||+|.++|.+..++|++|+.+++++++|.|||+|+|+|+  +..++++|++
T Consensus         1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v   78 (81)
T cd03695           1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV   78 (81)
T ss_pred             CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence            7999999997  46778999999999999999999999999999999999999999999999999998  5788999999


Q ss_pred             EeC
Q psy10357        150 LCD  152 (252)
Q Consensus       150 l~~  152 (252)
                      ||.
T Consensus        79 l~~   81 (81)
T cd03695          79 IVA   81 (81)
T ss_pred             EeC
Confidence            984

Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho

>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu

Probab=99.80  E-value=3.8e-19  Score=126.87  Aligned_cols=81  Identities=28%  Similarity=0.515  Sum_probs=77.3

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV  149 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v  149 (252)
                      |||+|+++|+  +.|++++|+|++|.+++||++.++|++...+|++|+.+++++++|.|||+|++.|++++..++.+|++
T Consensus         1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v   80 (83)
T cd03696           1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV   80 (83)
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence            7999999996  78999999999999999999999999999999999999999999999999999999888789999999


Q ss_pred             EeC
Q psy10357        150 LCD  152 (252)
Q Consensus       150 l~~  152 (252)
                      ||.
T Consensus        81 l~~   83 (83)
T cd03696          81 LSS   83 (83)
T ss_pred             EcC
Confidence            974

SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.7e-17  Score=142.23  Aligned_cols=195  Identities=19%  Similarity=0.228  Sum_probs=163.2

Q ss_pred             HHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc---
Q psy10357          6 KYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK---   81 (252)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~---   81 (252)
                      +.++.+|+|....   ++.|+||+||..+.|++.              |+++|++ ||.|.++.++|++|.|.++|+   
T Consensus       162 y~qIk~FvkGt~A---e~aPIIPiSA~~~~NIDa--------------l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNk  224 (415)
T COG5257         162 YEQIKEFVKGTVA---ENAPIIPISAQHKANIDA--------------LIEAIEKYIPTPERDLDKPPRMYVARSFDVNK  224 (415)
T ss_pred             HHHHHHHhccccc---CCCceeeehhhhccCHHH--------------HHHHHHHhCCCCccCCCCCceEEEEeecccCC
Confidence            4566677776665   888999999999999975              6777755 999999999999999999994   


Q ss_pred             -C------CCeEEEEEEEEeeeecCCEEEEecCC------------ceEEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357         82 -D------MGTVVMGKVESGEAKKGQSLVLMPNR------------TPVIVDQLWSDDEEVSSVGPGENIKVKLK---GI  139 (252)
Q Consensus        82 -g------~G~vv~G~v~~G~l~~gd~v~i~p~~------------~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~  139 (252)
                       |      .|-|+.|.+.+|.+++||++.+.|.=            ...+|.||+....++++|.+|-.+++..+   .+
T Consensus       225 PGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~l  304 (415)
T COG5257         225 PGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTL  304 (415)
T ss_pred             CCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcch
Confidence             3      68899999999999999999999963            24689999999999999999999998654   34


Q ss_pred             CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCccc
Q psy10357        140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKS  210 (252)
Q Consensus       140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~  210 (252)
                      .+.|--.|.++..++..|+....|+.+..+|..         -.+|+.|....+.+|+...-+.|.+..           
T Consensus       305 tKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k-----------  373 (415)
T COG5257         305 TKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAK-----------  373 (415)
T ss_pred             hhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEec-----------
Confidence            556777899999999888888999999999973         126899999999999999888776641           


Q ss_pred             ccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        211 KTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       211 ~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                                 .-.+++.|.+|+|.+..+
T Consensus       374 -----------~d~~ev~Lk~Pvcae~g~  391 (415)
T COG5257         374 -----------KDEIEVKLKRPVCAEIGE  391 (415)
T ss_pred             -----------CceEEEEeccceecCCCC
Confidence                       126688899999988765

>KOG0052|consensus

Probab=99.77  E-value=8.2e-19  Score=154.33  Aligned_cols=213  Identities=24%  Similarity=0.415  Sum_probs=174.1

Q ss_pred             eEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-CCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCC
Q psy10357         24 LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-KMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQ  100 (252)
Q Consensus        24 ~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd  100 (252)
                      +..+|++....++...+.  ....|..+      +..+..-.+ ....|.-. ..++|+  |.|      +..|.++.+.
T Consensus       142 v~qliv~v~k~D~~~~~~--s~~r~~ei------~k~~~~~~~~~g~n~~~~-~~~~~~~~g~~------~~t~iie~~~  206 (391)
T KOG0052|consen  142 VKQLIVGVNKMDSTEPPY--SEARYEEI------KKEVSSYIKKIGYNPAAV-LQDVYKIGGIG------VETGISEPGM  206 (391)
T ss_pred             ceeeeEEeecccccCCCc--cccchhhh------heeeeeeeeccccCChhh-hccceeeccee------eeeeeccCcc
Confidence            566777777777765443  33444332      222211110 11112111 445554  444      8889999999


Q ss_pred             EEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCC-CCcceecEEEEEEEEeccCCcCCCC
Q psy10357        101 SLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN-NPARTARVFDAQIVILEHKSIICAG  179 (252)
Q Consensus       101 ~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~~f~a~i~~~~~~~~i~~g  179 (252)
                      .+...|.....++++..++++.-.++.+|++|+++..++...++.+|+++.+.. .|+.....|.+++.+++++..+..|
T Consensus       207 ~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qviilnhpgqis~g  286 (391)
T KOG0052|consen  207 DVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAGFTAQVIILNHPGQISVG  286 (391)
T ss_pred             ceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCccccccceeeEEEecCccccCCC
Confidence            999999999999999999998888999999999999999999999999998874 4556667899999999999999999


Q ss_pred             CEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357        180 YSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       180 ~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd  251 (252)
                      |.+.|.||+.+++|++..|..++|..+|+..+..|++++.++.+.+.+.+.+|+|+|.|++++.||||.+||
T Consensus       287 y~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~~~~~~~l~rfav~d  358 (391)
T KOG0052|consen  287 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVESFSDYVPLGRFAVRD  358 (391)
T ss_pred             ccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccccccccccccccchhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997

>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G

Probab=99.76  E-value=8.5e-18  Score=124.30  Aligned_cols=92  Identities=29%  Similarity=0.494  Sum_probs=84.6

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .+++|+|++.+++++.++.+|+++.+|+|+.+++|+|..|.+++|.++..  +..++.|++||.+.|+|.+++|+|+|+|
T Consensus         2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~--~~~~~~l~~~~~a~v~l~~~~pi~~e~~   79 (102)
T cd01513           2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEE--KKPPEFLKSGERGIVEVELQKPVALETF   79 (102)
T ss_pred             cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCccc--ccCchhhcCCCEEEEEEEECCceEEEEh
Confidence            46899999999999889999999999999999999999999999987433  3467999999999999999999999999


Q ss_pred             CCCCCceeEEEEeC
Q psy10357        239 KLFPQMGRFTLRDE  252 (252)
Q Consensus       239 ~~~~~lgrfilrd~  252 (252)
                      ++++.+|||+|||.
T Consensus        80 ~~~~~~grfilr~~   93 (102)
T cd01513          80 SENQEGGRFALRDG   93 (102)
T ss_pred             hhCCCcccEEEEeC
Confidence            99999999999984

Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s

>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=99.75  E-value=1.3e-17  Score=122.82  Aligned_cols=86  Identities=38%  Similarity=0.736  Sum_probs=77.6

Q ss_pred             CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEe
Q psy10357        156 PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICL  235 (252)
Q Consensus       156 ~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~  235 (252)
                      |++.+++|+|+|.+|++++++.+||++.+|+++.+++|++.+|...+|  +|++.   |++|++||.|.|+|++++|+|+
T Consensus         1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v   75 (99)
T PF03143_consen    1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV   75 (99)
T ss_dssp             SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred             CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence            567899999999999999999999999999999999999999999998  55544   8999999999999999999999


Q ss_pred             eecCCCCCceeEEEEeC
Q psy10357        236 DQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       236 ~~~~~~~~lgrfilrd~  252 (252)
                      |.|+      ||+|||+
T Consensus        76 e~~~------Rf~lR~~   86 (99)
T PF03143_consen   76 EPFS------RFILRDG   86 (99)
T ss_dssp             TTTT------EEEEEET
T ss_pred             ecCc------eEEEccC
Confidence            9998      9999985

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.62  E-value=6e-15  Score=139.98  Aligned_cols=146  Identities=24%  Similarity=0.298  Sum_probs=112.2

Q ss_pred             hHHHHHHhccccccccc-CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          4 SVKYAVSFWQPKLWTVR-QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~-~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      .+..++..++..++.-+ .-.+|++++||++|++..++.   ...|...+.|..+++.+|.|..+.+.||+|.|++++. 
T Consensus       135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~---~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d  211 (594)
T TIGR01394       135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLD---DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYD  211 (594)
T ss_pred             HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCc---ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEee
Confidence            35566777776666411 225799999999999765542   1122222334556778998888889999999999975 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                       +.|+++.|+|.+|+|+.||.|.+.|.+   ...+|++|+.+    +.++++|.|||+|++.  ++  .++.+||+||++
T Consensus       212 ~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~~~  287 (594)
T TIGR01394       212 EYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIADP  287 (594)
T ss_pred             CCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEeCC
Confidence             789999999999999999999999974   25789999876    5689999999999874  44  578999999998


Q ss_pred             CCC
Q psy10357        154 NNP  156 (252)
Q Consensus       154 ~~~  156 (252)
                      +.+
T Consensus       288 ~~~  290 (594)
T TIGR01394       288 EVP  290 (594)
T ss_pred             Ccc
Confidence            753

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=3e-15  Score=134.23  Aligned_cols=182  Identities=18%  Similarity=0.241  Sum_probs=136.3

Q ss_pred             eEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357         24 LLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS  101 (252)
Q Consensus        24 ~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~  101 (252)
                      ...+.+||++|.|+.+.             |.+.++.+|+|+.+.+.|++..|.|+|.  ..|.++.-||..|++++||+
T Consensus       161 ~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdk  227 (603)
T COG0481         161 SDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDK  227 (603)
T ss_pred             chheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCE
Confidence            36889999999999885             6778899999999999999999999874  67999999999999999999


Q ss_pred             EEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCCcceecEEEEEEEEeccCCcCC
Q psy10357        102 LVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIIC  177 (252)
Q Consensus       102 v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~  177 (252)
                      +.++.+++...|..+..+.   .+.++..+|| |+.-..++ +..|.+.||+|+..++|...                ..
T Consensus       228 i~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p~~e----------------~L  290 (603)
T COG0481         228 IRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNPATE----------------PL  290 (603)
T ss_pred             EEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCCccc----------------cC
Confidence            9999999999999999874   4677899999 44444444 44789999999976654322                24


Q ss_pred             CCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCCCc
Q psy10357        178 AGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQM  244 (252)
Q Consensus       178 ~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~l  244 (252)
                      +||....       +..+..+ +.+|....+.++.....|..|| +..+++++...++--.-.+.-|
T Consensus       291 pGfk~~~-------P~Vf~Gl-yPid~~dye~LrdAleKL~LND-asl~~E~EtS~ALGfGfRcGFL  348 (603)
T COG0481         291 PGFKEVK-------PMVFAGL-YPVDSDDYEDLRDALEKLQLND-ASLTYEPETSQALGFGFRCGFL  348 (603)
T ss_pred             CCCCcCC-------ceEEEee-cccChhHHHHHHHHHHhccccc-ceeeeccccchhccCceeehhh
Confidence            4554322       2222333 5677766777766667888998 4566776665555443333333

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.58  E-value=1.9e-14  Score=136.75  Aligned_cols=117  Identities=21%  Similarity=0.325  Sum_probs=101.5

Q ss_pred             EEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357         25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS  101 (252)
Q Consensus        25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~  101 (252)
                      +++++||++|.|+.+              |++. ++.+|.|..+.+.||++.|.++|.  +.|+++.|+|.+|+|+.||.
T Consensus       156 ~vi~vSAktG~GI~~--------------Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~  221 (595)
T TIGR01393       156 EAILASAKTGIGIEE--------------ILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDK  221 (595)
T ss_pred             eEEEeeccCCCCHHH--------------HHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCE
Confidence            589999999999976              4454 467888888889999999999975  78999999999999999999


Q ss_pred             EEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeeeC-CCCccceeEEeCCCCC
Q psy10357        102 LVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDPNNP  156 (252)
Q Consensus       102 v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~  156 (252)
                      |.++|.++..+|.+|+.+.   .++++|.||| |+..++++. ..++..||+|++.++|
T Consensus       222 v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~~  279 (595)
T TIGR01393       222 IRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKNP  279 (595)
T ss_pred             EEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCCc
Confidence            9999999999999999876   6789999999 666667664 4789999999988654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.55  E-value=5.5e-14  Score=133.43  Aligned_cols=142  Identities=18%  Similarity=0.279  Sum_probs=107.4

Q ss_pred             HHHHHHhcccccccc-cCceeEEEecccccCCcccCCCCC--CcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357          5 VKYAVSFWQPKLWTV-RQEILLIISPSGQMGQNLKEPVGP--EICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~-~~~~~~~ipiS~~~G~ni~~~~~~--~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      +..++..++..+... ...++|++|+||++|+|..+....  ...+|     |..+++.+|+|.++.+.||+|.|++++.
T Consensus       140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V~k~~~  214 (607)
T PRK10218        140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQISQLDY  214 (607)
T ss_pred             HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEEEeeEe
Confidence            445556665554432 134689999999999976544210  12333     3356788999988888999999999964


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecC-Cc--eEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPN-RT--PVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD  152 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~-~~--~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~  152 (252)
                        +.|+++.|||.+|+|+.||.|.+.+. ++  ..+|.+|..+    ..++++|.|||+|++  .+  ..++..||+||+
T Consensus       215 d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~g--l~~~~~GdTl~~  290 (607)
T PRK10218        215 NSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TG--LGELNISDTVCD  290 (607)
T ss_pred             cCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--EC--ccccccCcEEec
Confidence              68999999999999999999999887 44  5778888654    568999999999985  43  457889999998


Q ss_pred             CCC
Q psy10357        153 PNN  155 (252)
Q Consensus       153 ~~~  155 (252)
                      ++.
T Consensus       291 ~~~  293 (607)
T PRK10218        291 TQN  293 (607)
T ss_pred             CCC
Confidence            865

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.52  E-value=1e-13  Score=132.00  Aligned_cols=117  Identities=23%  Similarity=0.334  Sum_probs=100.1

Q ss_pred             EEEecccccCCcccCCCCCCcCCCCccCchHHhh-ccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCE
Q psy10357         25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI-DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQS  101 (252)
Q Consensus        25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~  101 (252)
                      .++++||++|+|+.+              |++.| +.+|+|..+.+.||++.|.++|.  +.|+++.|+|.+|+|+.||.
T Consensus       160 ~vi~iSAktG~GI~~--------------Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~  225 (600)
T PRK05433        160 DAVLVSAKTGIGIEE--------------VLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK  225 (600)
T ss_pred             eEEEEecCCCCCHHH--------------HHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence            589999999999976              45554 66888888889999999999874  78999999999999999999


Q ss_pred             EEEecCCceEEEEEEEeC---CccceeecCCCeEEEEEeeeC-CCCccceeEEeCCCCC
Q psy10357        102 LVLMPNRTPVIVDQLWSD---DEEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDPNNP  156 (252)
Q Consensus       102 v~i~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~  156 (252)
                      |.+.|.+...+|.+|..+   ..++++|.||| ++..++++. ..+++.||+|++.+.+
T Consensus       226 i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~~  283 (600)
T PRK05433        226 IKMMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAKNP  283 (600)
T ss_pred             EEEecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCCCc
Confidence            999999999999999875   46889999999 555556653 4789999999988654

>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea

Probab=99.47  E-value=7e-13  Score=97.59  Aligned_cols=86  Identities=23%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             CCCCeeEEEeeEEc----------CCCeEEEEEEEEeeeecCCEEEEecC-------C-----ceEEEEEEEeCCcccee
Q psy10357         68 MDGPFLMPVVEKFK----------DMGTVVMGKVESGEAKKGQSLVLMPN-------R-----TPVIVDQLWSDDEEVSS  125 (252)
Q Consensus        68 ~~~p~~~~I~~~~~----------g~G~vv~G~v~~G~l~~gd~v~i~p~-------~-----~~~~V~sI~~~~~~v~~  125 (252)
                      .++|++|.|.++|.          ++|.|+.|++.+|.+++||++.|.|.       +     ...+|.||+.++..+++
T Consensus         2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~   81 (113)
T cd03688           2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE   81 (113)
T ss_pred             CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence            57899999999994          47999999999999999999999976       1     46799999999999999


Q ss_pred             ecCCCeEEE---EEeeeCCCCccceeEEeCC
Q psy10357        126 VGPGENIKV---KLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus       126 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~  153 (252)
                      |.||+.+++   ...++.+.|..+|+|++.+
T Consensus        82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p  112 (113)
T cd03688          82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP  112 (113)
T ss_pred             EeCCCeEEEccccCccccccceeeEEEeecC
Confidence            999999999   5557888899999999875

eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.46  E-value=1e-12  Score=117.90  Aligned_cols=143  Identities=21%  Similarity=0.343  Sum_probs=110.0

Q ss_pred             hHHHHHHhccccccc-ccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHH-hhccCCCCCCCCCCCeeEEEeeE-
Q psy10357          4 SVKYAVSFWQPKLWT-VRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIP-FIDALPSLNRKMDGPFLMPVVEK-   79 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~-~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~~~~I~~~-   79 (252)
                      .+-.++-.++-.|+. -++=++|+++.||+.|+.-.++.++ ..|     ..|++ .++++|.|..+.+.||+|.|... 
T Consensus       139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m-----~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ld  213 (603)
T COG1217         139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDM-----APLFETILDHVPAPKGDLDEPLQMQVTQLD  213 (603)
T ss_pred             HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccch-----hHHHHHHHHhCCCCCCCCCCCeEEEEEeec
Confidence            344555555555654 1244679999999999865555322 111     13555 67889999999999999999887 


Q ss_pred             Ec-CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEe
Q psy10357         80 FK-DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLC  151 (252)
Q Consensus        80 ~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~  151 (252)
                      |+ ..|++..|||.+|++++||.|.+.-.+   +..+|..+..+.    .++++|.|||+|++  .|+  .++..|+++|
T Consensus       214 yn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai--aG~--~~~~igdTi~  289 (603)
T COG1217         214 YNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI--AGL--EDINIGDTIC  289 (603)
T ss_pred             cccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEE--cCc--cccccccccc
Confidence            65 679999999999999999999998755   567888887764    58899999999986  555  4777899999


Q ss_pred             CCCC
Q psy10357        152 DPNN  155 (252)
Q Consensus       152 ~~~~  155 (252)
                      ++++
T Consensus       290 d~~~  293 (603)
T COG1217         290 DPDN  293 (603)
T ss_pred             CCCC
Confidence            9975

>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase

Probab=99.40  E-value=2e-12  Score=92.83  Aligned_cols=74  Identities=22%  Similarity=0.400  Sum_probs=66.0

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE-eCceEEeee
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE-AAGVICLDQ  237 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~  237 (252)
                      .++.|+|++.|+++++++.+||++.+|+++..++|+|..+..              +++++||.+.|++. +.+|+++++
T Consensus         2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~   67 (87)
T cd03708           2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE   67 (87)
T ss_pred             ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence            468899999999999999999999999999999999987632              67999999999999 589998886


Q ss_pred             cCCCCCceeEEEEeC
Q psy10357        238 FKLFPQMGRFTLRDE  252 (252)
Q Consensus       238 ~~~~~~lgrfilrd~  252 (252)
                            +|||+||+.
T Consensus        68 ------~grf~lr~g   76 (87)
T cd03708          68 ------GQRLIFREG   76 (87)
T ss_pred             ------CCeEEEECC
Confidence                  699999873

This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.

>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu

Probab=99.38  E-value=8e-12  Score=89.13  Aligned_cols=75  Identities=20%  Similarity=0.301  Sum_probs=68.8

Q ss_pred             EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCcccee
Q psy10357         74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGF  148 (252)
Q Consensus        74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~  148 (252)
                      ..|.++|+  +.|+++.|+|++|.++.|+.+.++|.+   ...+|+||+.+++++++|.+|+.++|.|++.+  ++++||
T Consensus         3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd   80 (84)
T cd03692           3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD   80 (84)
T ss_pred             EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence            56788885  568999999999999999999999999   67799999999999999999999999999766  999999


Q ss_pred             EE
Q psy10357        149 VL  150 (252)
Q Consensus       149 vl  150 (252)
                      +|
T Consensus        81 vi   82 (84)
T cd03692          81 II   82 (84)
T ss_pred             EE
Confidence            87

The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.

>KOG0462|consensus

Probab=99.37  E-value=1e-12  Score=119.87  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             hcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEE
Q psy10357         11 FWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVM   88 (252)
Q Consensus        11 ~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~   88 (252)
                      ..++.++..+++  +.|.+||++|.|+.+.             |...++++|+|+...+.||||.|.|.|.  ..|.+..
T Consensus       199 ~q~~~lF~~~~~--~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~  263 (650)
T KOG0462|consen  199 NQLFELFDIPPA--EVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIAL  263 (650)
T ss_pred             HHHHHHhcCCcc--ceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEE
Confidence            344455543333  7999999999999875             6678899999999999999999999975  6899999


Q ss_pred             EEEEEeeeecCCEEEEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCC
Q psy10357         89 GKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPN  154 (252)
Q Consensus        89 G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~  154 (252)
                      ++|..|.+++||+|..+.+++...|+.+....   .++....||+ |+..+.++ +..+...||+|++..
T Consensus       264 vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~  332 (650)
T KOG0462|consen  264 VRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKS  332 (650)
T ss_pred             EEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecc
Confidence            99999999999999999999988888887764   3555666666 22222333 356888899999876

>cd03707 EFTU_III Domain III of elongation factor (EF) Tu

Probab=99.37  E-value=7.1e-12  Score=90.56  Aligned_cols=74  Identities=19%  Similarity=0.273  Sum_probs=65.6

Q ss_pred             ecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357        160 ARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC  234 (252)
Q Consensus       160 ~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~  234 (252)
                      ++.|+|++.+++.     +.++++||++.+|+|+.++.|++..+.             ++++|++||.+.|+|.+++|++
T Consensus         3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~   69 (90)
T cd03707           3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA   69 (90)
T ss_pred             eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence            5889999999987     468999999999999999999987653             3377999999999999999999


Q ss_pred             eeecCCCCCceeEEEEeC
Q psy10357        235 LDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       235 ~~~~~~~~~lgrfilrd~  252 (252)
                      ++.      .|||+|||.
T Consensus        70 ~~~------~~rf~lR~~   81 (90)
T cd03707          70 LEK------GLRFAIREG   81 (90)
T ss_pred             Eec------CCEEEEecC
Confidence            887      489999984

Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix

>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU)

Probab=99.33  E-value=2.1e-11  Score=88.68  Aligned_cols=74  Identities=19%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             ecEEEEEEEEecc-----CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357        160 ARVFDAQIVILEH-----KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC  234 (252)
Q Consensus       160 ~~~f~a~i~~~~~-----~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~  234 (252)
                      +++|+|++.||++     +.++.+||++.+|+++.++.|+|..+    +         .+++|++||.+.|+|.+++|++
T Consensus         3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~   69 (93)
T cd03706           3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV   69 (93)
T ss_pred             ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence            6899999999997     47899999999999999999998765    2         1478999999999999999999


Q ss_pred             eeecCCCCCceeEEEEeC
Q psy10357        235 LDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       235 ~~~~~~~~~lgrfilrd~  252 (252)
                      +++      .|||+|||.
T Consensus        70 ~~~------g~rf~lR~~   81 (93)
T cd03706          70 LEK------GQRFTLRDG   81 (93)
T ss_pred             Eee------CCEEEEEEC
Confidence            998      389999984

mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.

>KOG0466|consensus

Probab=99.18  E-value=1.6e-11  Score=105.18  Aligned_cols=194  Identities=19%  Similarity=0.238  Sum_probs=144.1

Q ss_pred             HHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCCCCCCeeEEEeeEEc----
Q psy10357          7 YAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRKMDGPFLMPVVEKFK----   81 (252)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~~~~p~~~~I~~~~~----   81 (252)
                      ..+..|++....   +..|+||+||-.+.|++-              +.++ ..+||.|.|+...|.||.|.+.|.    
T Consensus       202 e~I~kFi~~t~a---e~aPiiPisAQlkyNId~--------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkP  264 (466)
T KOG0466|consen  202 EQIQKFIQGTVA---EGAPIIPISAQLKYNIDV--------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKP  264 (466)
T ss_pred             HHHHHHHhcccc---CCCceeeehhhhccChHH--------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCC
Confidence            345555555444   667999999999999965              4564 577999999999999999999984    


Q ss_pred             C------CCeEEEEEEEEeeeecCCEEEEecCCc------e-------EEEEEEEeCCccceeecCCCeEEEEEe---ee
Q psy10357         82 D------MGTVVMGKVESGEAKKGQSLVLMPNRT------P-------VIVDQLWSDDEEVSSVGPGENIKVKLK---GI  139 (252)
Q Consensus        82 g------~G~vv~G~v~~G~l~~gd~v~i~p~~~------~-------~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~  139 (252)
                      |      +|-+..|.+..|.+++||.+.+.|.=.      .       .+|.|+...+.+.+.|.+|..+++..+   .+
T Consensus       265 G~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtl  344 (466)
T KOG0466|consen  265 GSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTL  344 (466)
T ss_pred             CchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcch
Confidence            3      688999999999999999999999631      1       245555556778999999999988654   12


Q ss_pred             CCCCccceeEEeCCCCCcceecEEEEEEEEecc---------C-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeeccc
Q psy10357        140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------K-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKK  205 (252)
Q Consensus       140 ~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~  205 (252)
                      ...|--.|.++......|....+++...++|..         +     ..+.+|....+.+|+.+.-+++..+..     
T Consensus       345 craDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~-----  419 (466)
T KOG0466|consen  345 CRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA-----  419 (466)
T ss_pred             hhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEec-----
Confidence            223444577777777777788888888777642         1     136777778888888887777765421     


Q ss_pred             CCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        206 TGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       206 tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                                       -.+++.|..|+|.+..+
T Consensus       420 -----------------d~~k~~Lt~P~CteigE  436 (466)
T KOG0466|consen  420 -----------------DMAKIQLTSPVCTEIGE  436 (466)
T ss_pred             -----------------ceeeeEecCchhcccch
Confidence                             25578888999987654

>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=99.15  E-value=2.8e-10  Score=78.91  Aligned_cols=68  Identities=26%  Similarity=0.382  Sum_probs=62.1

Q ss_pred             CeEEEEEEEEeeeecCCEEEEec--CCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCC-ccceeEEe
Q psy10357         84 GTVVMGKVESGEAKKGQSLVLMP--NRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD-VSPGFVLC  151 (252)
Q Consensus        84 G~vv~G~v~~G~l~~gd~v~i~p--~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~  151 (252)
                      |++++|||.+|+|+.||+|.++|  .+..   .+|++|+.++....++.+|+.+++.+...+.++ +++||+||
T Consensus         1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~   74 (74)
T PF03144_consen    1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT   74 (74)
T ss_dssp             EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred             CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence            78999999999999999999977  3344   999999999999999999999999999888888 89999997

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....

>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins

Probab=99.15  E-value=5.8e-10  Score=77.59  Aligned_cols=78  Identities=33%  Similarity=0.421  Sum_probs=69.7

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEec--CCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMP--NRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p--~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      +++.|.++|+  +.|.++.|+|.+|++++||.+.+.|  .....+|++|+.++.+++++.||+.+++.+.  +..+++.|
T Consensus         1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~--~~~~~~~g   78 (83)
T cd01342           1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLK--DKDDIKIG   78 (83)
T ss_pred             CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEc--cccccCCC
Confidence            4788999885  5789999999999999999999999  7888999999999999999999999999887  33489999


Q ss_pred             eEEe
Q psy10357        148 FVLC  151 (252)
Q Consensus       148 ~vl~  151 (252)
                      ++++
T Consensus        79 ~~l~   82 (83)
T cd01342          79 DTLT   82 (83)
T ss_pred             CEec
Confidence            9986

Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.12  E-value=6.7e-10  Score=105.56  Aligned_cols=110  Identities=21%  Similarity=0.291  Sum_probs=87.1

Q ss_pred             eeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357         23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK   97 (252)
Q Consensus        23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~   97 (252)
                      +++++|+||++|+|+.++              ++.|   ..+.....+.+.|+++.|.+++.  |.|++++|+|.+|+|+
T Consensus       224 ~~~~v~iSAktGeGI~eL--------------l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~  289 (587)
T TIGR00487       224 DTIFVPVSALTGDGIDEL--------------LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLR  289 (587)
T ss_pred             CceEEEEECCCCCChHHH--------------HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEe
Confidence            468999999999999764              3322   22333334456899999999984  8999999999999999


Q ss_pred             cCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCc-cceeEEeC
Q psy10357         98 KGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDV-SPGFVLCD  152 (252)
Q Consensus        98 ~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~  152 (252)
                      +||.+.+.|.  ..+|++|+. ++..+++|.||+.|.+.  |++  ++ ..||.++-
T Consensus       290 ~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd~~~~  340 (587)
T TIGR00487       290 VGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGDEFIV  340 (587)
T ss_pred             CCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCCEEEE
Confidence            9999999985  678999998 66799999999999763  443  33 57888873

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.11  E-value=2.4e-10  Score=108.47  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=68.4

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CC-CCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LP-SLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK   97 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~-~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~   97 (252)
                      .+++++|+||++|+|+.++.     .|     |....+. ++ ..+.+.+.|++++|.++|.  |.|++++|.|.+|+|+
T Consensus       189 ~~v~iVpVSA~tGeGideLl-----~~-----l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~  258 (590)
T TIGR00491       189 KTVAIIPISAITGEGIPELL-----TM-----LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILR  258 (590)
T ss_pred             CCceEEEeecCCCCChhHHH-----HH-----HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence            46899999999999997752     22     1111111 21 1133467899999999985  8999999999999999


Q ss_pred             cCCEEEEecCCc--eEEEEEEEeCC
Q psy10357         98 KGQSLVLMPNRT--PVIVDQLWSDD  120 (252)
Q Consensus        98 ~gd~v~i~p~~~--~~~V~sI~~~~  120 (252)
                      +||.|.++|.+.  .++|++|....
T Consensus       259 ~GD~iv~~~~~~~i~~kVr~l~~~~  283 (590)
T TIGR00491       259 KGDTIAMAGSDDVIVTRVRALLKPR  283 (590)
T ss_pred             CCCEEEEccCCCcccEEEEEecCCC
Confidence            999999999874  68999998653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu

Probab=99.07  E-value=2.5e-09  Score=78.31  Aligned_cols=85  Identities=20%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             eeEEeCCCCCcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEE
Q psy10357        147 GFVLCDPNNPARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM  225 (252)
Q Consensus       147 G~vl~~~~~~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v  225 (252)
                      |++++.++. ..+++.|++++.++.. +.++++++++.+|+|+.++.|+|.-    ++.          +.+.+|+.+.+
T Consensus         1 G~vl~~~~~-~~~~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~l----l~~----------~~~~pg~~~~a   65 (97)
T cd04094           1 GDVLADPGS-LLPTRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVL----LDR----------DELAPGEEALA   65 (97)
T ss_pred             CCEEecCCC-cCCceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEe----CCc----------cccCCCCEEEE
Confidence            789998876 4557999999999876 3579999999999999999999863    221          56899999999


Q ss_pred             EEEeCceEEeeecCCCCCceeEEEEeC
Q psy10357        226 RLEAAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       226 ~l~l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +|.+++|+++...+      ||+||+.
T Consensus        66 ~l~l~~pl~~~~gd------rfilR~~   86 (97)
T cd04094          66 QLRLEEPLVALRGD------RFILRSY   86 (97)
T ss_pred             EEEECCcEeecCCC------eEEEeeC
Confidence            99999999998876      9999973

SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.04  E-value=7.2e-10  Score=105.46  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=76.2

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCC-CCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPS-LNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK   97 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~-~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~   97 (252)
                      .+++++|+||++|+|+.++.  ..        +....+. ++. -..+.+.|++++|.+++.  |.|++++|+|.+|+|+
T Consensus       191 ~~v~ivpiSA~tGeGi~dLl--~~--------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~  260 (586)
T PRK04004        191 KTVAIVPVSAKTGEGIPDLL--MV--------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLR  260 (586)
T ss_pred             CCceEeeccCCCCCChHHHH--HH--------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEE
Confidence            57899999999999997642  10        1111111 221 134467899999999984  8999999999999999


Q ss_pred             cCCEEEEecCCc--eEEEEEEEeCC------------ccceeecCCCeEEE
Q psy10357         98 KGQSLVLMPNRT--PVIVDQLWSDD------------EEVSSVGPGENIKV  134 (252)
Q Consensus        98 ~gd~v~i~p~~~--~~~V~sI~~~~------------~~v~~a~aG~~v~l  134 (252)
                      +||.|.+.|.+.  .++|++|..+.            ..+++|.|...|.+
T Consensus       261 ~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i  311 (586)
T PRK04004        261 KGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI  311 (586)
T ss_pred             CCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence            999999999874  57999999862            45666666655554

>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A

Probab=99.03  E-value=5.7e-09  Score=73.00  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=59.5

Q ss_pred             CCeeEEEee--EEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         70 GPFLMPVVE--KFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        70 ~p~~~~I~~--~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      .|-++.|..  +|+++. ++.|+|..|.+++|..|   ......+|+|||.+++++++|.+||.|++.+.|..  ++..|
T Consensus         3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG   76 (81)
T PF14578_consen    3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG   76 (81)
T ss_dssp             -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred             CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence            356677754  467777 88889999999999998   44568899999999999999999999999999744  99999


Q ss_pred             eEEe
Q psy10357        148 FVLC  151 (252)
Q Consensus       148 ~vl~  151 (252)
                      |+|.
T Consensus        77 DiLy   80 (81)
T PF14578_consen   77 DILY   80 (81)
T ss_dssp             -EEE
T ss_pred             CEEe
Confidence            9873

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.02  E-value=1.9e-09  Score=107.49  Aligned_cols=103  Identities=18%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCC------CCCCCCCCeeEEEeeEEc--CCCeEEEEEEEE
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPS------LNRKMDGPFLMPVVEKFK--DMGTVVMGKVES   93 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~------~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~   93 (252)
                      .+++++|+||++|+|+.++              ++.|..++.      .....+.|++++|+++|.  |.|++++|.|.+
T Consensus       646 ~~v~iVpVSA~tGeGId~L--------------l~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~  711 (1049)
T PRK14845        646 RTVAIVPVSAKTGEGIPEL--------------LMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYD  711 (1049)
T ss_pred             CCceEEEEEcCCCCCHHHH--------------HHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEc
Confidence            5789999999999999764              344433221      233457899999999985  899999999999


Q ss_pred             eeeecCCEEEEecCCc--eEEEEEEEeC------------CccceeecCCCeEEEEEee
Q psy10357         94 GEAKKGQSLVLMPNRT--PVIVDQLWSD------------DEEVSSVGPGENIKVKLKG  138 (252)
Q Consensus        94 G~l~~gd~v~i~p~~~--~~~V~sI~~~------------~~~v~~a~aG~~v~l~l~~  138 (252)
                      |+|++||.|.++|.+.  ..+|+++...            ...+++|.|..-|.+...|
T Consensus       712 G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~g  770 (1049)
T PRK14845        712 GTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPG  770 (1049)
T ss_pred             CEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCC
Confidence            9999999999999865  7899999742            2356777777766664333

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.01  E-value=3.5e-09  Score=103.24  Aligned_cols=115  Identities=22%  Similarity=0.243  Sum_probs=87.7

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG   99 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g   99 (252)
                      .+++|+|+||++|+|+.++.  +.+.|     +.+    ......+.+.|++..|.+++.  |.|++++|+|.+|+|+.|
T Consensus       425 ~~vp~vpvSAktG~GI~eLl--e~I~~-----~~e----~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G  493 (787)
T PRK05306        425 GDTIFVPVSAKTGEGIDELL--EAILL-----QAE----VLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG  493 (787)
T ss_pred             CCceEEEEeCCCCCCchHHH--Hhhhh-----hhh----hhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence            45799999999999998752  11111     001    111234457789999999874  889999999999999999


Q ss_pred             CEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCc-cceeEEeCC
Q psy10357        100 QSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDV-SPGFVLCDP  153 (252)
Q Consensus       100 d~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~~  153 (252)
                      |.|.+.|  ...+|++++.. +.++++|.||+.|.+.  |++  ++ ..||+|+..
T Consensus       494 d~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd~l~~~  543 (787)
T PRK05306        494 DIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGDEFVVV  543 (787)
T ss_pred             CEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCCEEEEc
Confidence            9999975  67899999984 6799999999999863  333  44 689999844

>PRK12740 elongation factor G; Reviewed

Probab=98.99  E-value=3.5e-09  Score=102.68  Aligned_cols=117  Identities=26%  Similarity=0.380  Sum_probs=93.0

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-----------------CCCCCeeEEEeeEEc--
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-----------------KMDGPFLMPVVEKFK--   81 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-----------------~~~~p~~~~I~~~~~--   81 (252)
                      ..-+|++..||++|.|+..+             |...++.+|.|..                 +.+.|+.+.|..++.  
T Consensus       234 ~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~  300 (668)
T PRK12740        234 GEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDP  300 (668)
T ss_pred             CCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecC
Confidence            45679999999999999763             3334566777731                 335789999999875  


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      +.|.++.+||.+|+|+.||.|.+.+.++..+|..|...    ..++++|.|||.+++.  +++  ++..|++|++.+
T Consensus       301 ~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gdtl~~~~  373 (668)
T PRK12740        301 FVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--KLK--DAATGDTLCDKG  373 (668)
T ss_pred             CCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--ccC--ccCCCCEEeCCC
Confidence            56999999999999999999999998877777777543    4789999999999874  443  688999998764

>PRK13351 elongation factor G; Reviewed

Probab=98.94  E-value=8.5e-09  Score=100.33  Aligned_cols=116  Identities=22%  Similarity=0.288  Sum_probs=92.4

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC------------------CCCCCeeEEEeeEEc
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR------------------KMDGPFLMPVVEKFK   81 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~------------------~~~~p~~~~I~~~~~   81 (252)
                      .+-+|++..||++|.|+..              |++ .+..+|.|..                  +.+.|+.+.|..++.
T Consensus       250 ~~~~PV~~gSA~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~  315 (687)
T PRK13351        250 GHLVPVLFGSALKNIGIEP--------------LLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQY  315 (687)
T ss_pred             CCEEEEEecccCcCccHHH--------------HHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeee
Confidence            4567899999999999965              455 4566777732                  235789999998864


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                        +.|.+..+||.+|+|+.||.|.+.+.+...+|..|...    ..++++|.|||++++  .|++  ++..|++|++.+
T Consensus       316 d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl~~~~  390 (687)
T PRK13351        316 DPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAV--AGLK--ELETGDTLHDSA  390 (687)
T ss_pred             cCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEE--ECcc--cCccCCEEeCCC
Confidence              57999999999999999999999998888888777554    468999999999865  5443  567899998765

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.78  E-value=6.3e-09  Score=87.31  Aligned_cols=58  Identities=28%  Similarity=0.381  Sum_probs=47.5

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL   64 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~   64 (252)
                      .+..++..+++.++. +..+++++|+||++|+|+.+++  .+++||+|+||+++|+.+.+|
T Consensus       161 ~i~~~l~~~l~~~~~-~~~~~~ii~iSA~tg~gi~~~~--~~~~w~~g~~l~~~l~~~~~~  218 (219)
T cd01883         161 EIKKELSPFLKKVGY-NPKDVPFIPISGLTGDNLIEKS--ENMPWYKGPTLLEALDSLEPP  218 (219)
T ss_pred             HHHHHHHHHHHHcCC-CcCCceEEEeecCcCCCCCcCC--CCCCCccCCcHHHHHhCCCCC
Confidence            344555556666664 4567899999999999999888  899999999999999998654

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.76  E-value=7.4e-08  Score=90.71  Aligned_cols=117  Identities=16%  Similarity=0.190  Sum_probs=91.9

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC---------CCCCCeeEEEeeEEc-----CCC
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR---------KMDGPFLMPVVEKFK-----DMG   84 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~---------~~~~p~~~~I~~~~~-----g~G   84 (252)
                      ...-+|++..||+++.|+..              |++ .++.+|.|..         ..+.+|...|..+..     ..|
T Consensus       245 ~~~~~PV~~GSA~~n~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~g  310 (526)
T PRK00741        245 AGELTPVFFGSALNNFGVQE--------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRD  310 (526)
T ss_pred             cCCeEEEEEeecccCcCHHH--------------HHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCc
Confidence            46778999999999999976              455 4566777732         123567777776651     468


Q ss_pred             eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      ++...||.||+++.|+.|.....++..++..+...    ..++++|.|||++++.    +..++..||+||+.+
T Consensus       311 rlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~  380 (526)
T PRK00741        311 RIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE  380 (526)
T ss_pred             eEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence            99999999999999999999888888888887553    4689999999998773    456788999999765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.73  E-value=1.1e-08  Score=85.16  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL   64 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~   64 (252)
                      +..+++.+++.++.   ..++++|+||++|+|+.+.+  .+++||+||||+++|+.+++|
T Consensus       153 i~~~~~~~~~~~~~---~~~~ii~iSA~~g~ni~~~~--~~~~w~~g~~~~~~~~~~~~~  207 (208)
T cd04166         153 IVADYLAFAAKLGI---EDITFIPISALDGDNVVSRS--ENMPWYSGPTLLEHLETVPIA  207 (208)
T ss_pred             HHHHHHHHHHHcCC---CCceEEEEeCCCCCCCccCC--CCCCCCCCCcHHHHHhcCCCC
Confidence            44566666777664   34689999999999999887  789999999999999999876

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.66  E-value=1.3e-07  Score=91.84  Aligned_cols=112  Identities=16%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccC---CCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEeee
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDAL---PSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEA   96 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i---~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~l   96 (252)
                      ..++++|+||++|+|+.++              ++.|..+   .....+.+.|+...|.+.+  ++.|++++|+|.+|+|
T Consensus       383 ~~vpvv~VSAktG~GIdeL--------------le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtL  448 (742)
T CHL00189        383 GDTPMIPISASQGTNIDKL--------------LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTL  448 (742)
T ss_pred             CCceEEEEECCCCCCHHHH--------------HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEE
Confidence            3579999999999999764              3333221   1222334568888888876  3789999999999999


Q ss_pred             ecCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357         97 KKGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD  152 (252)
Q Consensus        97 ~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~  152 (252)
                      +.||.|.+.|  ...+|+++.. ++.++++|.||+.|.+  .|++ .....||.+.-
T Consensus       449 r~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd~l~v  500 (742)
T CHL00189        449 HIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGEHFQV  500 (742)
T ss_pred             ecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCCEEEE
Confidence            9999999988  5689999984 4679999999999876  3332 23445777654

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.66  E-value=2e-07  Score=91.23  Aligned_cols=82  Identities=29%  Similarity=0.435  Sum_probs=69.8

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED  142 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~  142 (252)
                      +.||.+.|..++.  +.|.++.|||.+|+|+.||.|.+.+.+...+|..|...    ..++++|.|||++++  .|+  .
T Consensus       288 ~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl--~  363 (731)
T PRK07560        288 NGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGL--K  363 (731)
T ss_pred             CCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Ecc--c
Confidence            4589898988864  57999999999999999999999999888999999775    468999999999987  343  4


Q ss_pred             CccceeEEeCCC
Q psy10357        143 DVSPGFVLCDPN  154 (252)
Q Consensus       143 ~i~~G~vl~~~~  154 (252)
                      ++.+|++|+++.
T Consensus       364 ~~~~GdtL~~~~  375 (731)
T PRK07560        364 DARAGETVVSVE  375 (731)
T ss_pred             ccccCCEEeCCC
Confidence            677899998765

>PRK00007 elongation factor G; Reviewed

Probab=98.66  E-value=3e-07  Score=89.54  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC--------------------CCCCCeeEEEeeE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR--------------------KMDGPFLMPVVEK   79 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~--------------------~~~~p~~~~I~~~   79 (252)
                      ..-+|++..||+++.|+..              |++ .++.+|.|..                    +.+.||.+.|..+
T Consensus       252 ~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~  317 (693)
T PRK00007        252 NEIVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKI  317 (693)
T ss_pred             CcEEEEEecccccCcCHHH--------------HHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEe
Confidence            4667888899999999865              455 4566777631                    1256888889888


Q ss_pred             Ec--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      +.  ..|.+..+||.+|+|+.||+|+..-.++..+|..|...    ..++++|.|||++++  .|+  .++..||+|++.
T Consensus       318 ~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~GdtL~~~  393 (693)
T PRK00007        318 MTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA--VGL--KDTTTGDTLCDE  393 (693)
T ss_pred             eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEE--eCC--ccCCcCCEeeCC
Confidence            64  46899999999999999999986656667788888664    468999999999987  443  357899999876


Q ss_pred             C
Q psy10357        154 N  154 (252)
Q Consensus       154 ~  154 (252)
                      +
T Consensus       394 ~  394 (693)
T PRK00007        394 K  394 (693)
T ss_pred             C
Confidence            5

>PRK12739 elongation factor G; Reviewed

Probab=98.64  E-value=3.3e-07  Score=89.26  Aligned_cols=116  Identities=22%  Similarity=0.318  Sum_probs=89.9

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCC-------------------CCCCCeeEEEeeEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNR-------------------KMDGPFLMPVVEKF   80 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~-------------------~~~~p~~~~I~~~~   80 (252)
                      .+-+|++..||++|.|+..              |++. +..+|.|..                   +.+.||.+.|..++
T Consensus       250 ~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~  315 (691)
T PRK12739        250 MEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIM  315 (691)
T ss_pred             CCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEee
Confidence            4556888899999999865              4554 455777631                   23568999998886


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      .  ..|.+..+||.+|+|+.||.|.....++..+|..|...    ..++++|.|||++++.  |++  ++..||+|++.+
T Consensus       316 ~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~gdtl~~~~  391 (691)
T PRK12739        316 TDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAV--GLK--DTTTGDTLCDEK  391 (691)
T ss_pred             eCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEe--CCC--cccCCCEEeCCC
Confidence            4  46999999999999999999987766777788887654    4689999999999874  443  578999998765

>TIGR00503 prfC peptide chain release factor 3

Probab=98.59  E-value=4.2e-07  Score=85.67  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=92.0

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC-C--------CCCCeeEEEeeEEc-----CCCe
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR-K--------MDGPFLMPVVEKFK-----DMGT   85 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~-~--------~~~p~~~~I~~~~~-----g~G~   85 (252)
                      ..+-+|++..||+++.|+..+             |...++.+|.|.. .        .+.+|...|..+..     ..|+
T Consensus       246 ~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~gr  312 (527)
T TIGR00503       246 GGEMTPVFFGTALGNFGVDHF-------------LDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDR  312 (527)
T ss_pred             cCCeeEEEEeecccCccHHHH-------------HHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCce
Confidence            367789999999999999763             3335566777732 1        24567777766642     3699


Q ss_pred             EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      +...||.||+++.|++|.....++..++..+...    ..++++|.|||++++.    +..++..||+||+.+
T Consensus       313 iaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~  381 (527)
T TIGR00503       313 VAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE  381 (527)
T ss_pred             EEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence            9999999999999999998888888888888654    4689999999998763    456788999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane

Probab=98.59  E-value=8.2e-07  Score=63.42  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC---CccceeecCCCeEEEEEeee-CCCCcc
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD---DEEVSSVGPGENIKVKLKGI-EEDDVS  145 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~  145 (252)
                      |++.|..+..  ..|.+..+||.+|+|+.||.|.....++..+|..|..+   ..++++|.|||++++. .++ +.+++.
T Consensus         1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~   79 (86)
T cd03699           1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR   79 (86)
T ss_pred             CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence            4677777753  46999999999999999999988776666777777654   3588999999998773 222 235788


Q ss_pred             ceeEEeC
Q psy10357        146 PGFVLCD  152 (252)
Q Consensus       146 ~G~vl~~  152 (252)
                      .||+||+
T Consensus        80 ~Gdtl~~   86 (86)
T cd03699          80 VGDTITL   86 (86)
T ss_pred             cccEeeC
Confidence            9999974

The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.

>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes

Probab=98.59  E-value=5.3e-07  Score=63.93  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      ..|..++.  ..|.+..+||.+|+|+.||.|.....++..+|..|...    ..++++|.|||.+++  .++  +++..|
T Consensus         3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G   78 (83)
T cd04092           3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG   78 (83)
T ss_pred             EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence            44555543  46899999999999999999998877777788888654    368899999999986  544  568899


Q ss_pred             eEEeC
Q psy10357        148 FVLCD  152 (252)
Q Consensus       148 ~vl~~  152 (252)
                      |+||.
T Consensus        79 dtl~~   83 (83)
T cd04092          79 DTLVT   83 (83)
T ss_pred             CEEeC
Confidence            99974

Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.57  E-value=6.7e-07  Score=87.13  Aligned_cols=116  Identities=24%  Similarity=0.328  Sum_probs=89.5

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCC-------------------CCCCCeeEEEeeEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNR-------------------KMDGPFLMPVVEKF   80 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~-------------------~~~~p~~~~I~~~~   80 (252)
                      .+-+|++..||++|.|+..              |++. +..+|.|..                   +.+.||.+.|..++
T Consensus       251 ~~~~PV~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~  316 (689)
T TIGR00484       251 CEFFPVLCGSAFKNKGVQL--------------LLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVA  316 (689)
T ss_pred             CCEEEEEeccccCCccHHH--------------HHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEee
Confidence            4667899999999999865              4554 466777631                   12568999998886


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      .  ..|.+..+||.+|+|+.||.|...-.+...+|..|...    ..++++|.|||++++  .|+  .++..|++|++.+
T Consensus       317 ~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~gdtl~~~~  392 (689)
T TIGR00484       317 TDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAA--IGL--KDTTTGDTLCDPK  392 (689)
T ss_pred             ecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEE--cCC--CCCCCCCEEeCCC
Confidence            4  57899999999999999999987666666677777554    368999999999987  344  3567899998765

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes

Probab=98.56  E-value=8.3e-07  Score=62.84  Aligned_cols=75  Identities=29%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             EEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         74 MPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        74 ~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      ..|...+.  ..|.+..+||.+|+|+.||.|.....++..+|.+|...    ..++++|.|||.+++  .++  +++..|
T Consensus         3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~--~~~~~G   78 (83)
T cd04088           3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGL--KDTATG   78 (83)
T ss_pred             EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECC--CCCccC
Confidence            44555543  36899999999999999999999888888888888664    358899999999987  444  468889


Q ss_pred             eEEeC
Q psy10357        148 FVLCD  152 (252)
Q Consensus       148 ~vl~~  152 (252)
                      |+|++
T Consensus        79 dtl~~   83 (83)
T cd04088          79 DTLCD   83 (83)
T ss_pred             CEeeC
Confidence            99874

During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl

>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O)

Probab=98.54  E-value=7.5e-07  Score=63.53  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED  142 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~  142 (252)
                      +.||.+.|..+..  ..|....+||.+|+|+.||.|.... ....++..|...    ..++++|.|||++++  .+  .+
T Consensus         1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~g--l~   75 (85)
T cd03690           1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TG--LK   75 (85)
T ss_pred             CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--EC--CC
Confidence            3689999988854  4599999999999999999997654 455677777654    358899999999976  33  35


Q ss_pred             CccceeEEeC
Q psy10357        143 DVSPGFVLCD  152 (252)
Q Consensus       143 ~i~~G~vl~~  152 (252)
                      ++..||+|++
T Consensus        76 ~~~~Gdtl~~   85 (85)
T cd03690          76 GLRVGDVLGD   85 (85)
T ss_pred             CCcCccccCC
Confidence            6778998863

This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.

>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu

Probab=98.54  E-value=1.3e-06  Score=62.31  Aligned_cols=77  Identities=23%  Similarity=0.441  Sum_probs=59.3

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED  142 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~  142 (252)
                      |+|.|.++..  ..|.+..+||.+|+|+.||.|.+...+   +..+|.+|...    ..++++|.|||.+++  .++  .
T Consensus         1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl--~   76 (86)
T cd03691           1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGI--E   76 (86)
T ss_pred             CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECC--C
Confidence            5788888753  468999999999999999999877653   24677787443    258899999998854  444  4


Q ss_pred             CccceeEEeC
Q psy10357        143 DVSPGFVLCD  152 (252)
Q Consensus       143 ~i~~G~vl~~  152 (252)
                      ++..||+|++
T Consensus        77 ~~~~Gdtl~~   86 (86)
T cd03691          77 DITIGDTICD   86 (86)
T ss_pred             CCcccceecC
Confidence            7788999863

BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.47  E-value=1.3e-06  Score=85.50  Aligned_cols=82  Identities=21%  Similarity=0.419  Sum_probs=70.5

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCC
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEED  142 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~  142 (252)
                      +.||.+.|..++.  +.|+++.|||.+|+|+.||.|++.+.+...+|..|...    ..++++|.|||+|++  .++  .
T Consensus       287 ~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~  362 (720)
T TIGR00490       287 KGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGL--K  362 (720)
T ss_pred             CCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECc--c
Confidence            4589999988863  67999999999999999999999999999999999775    458999999999987  333  4


Q ss_pred             CccceeEEeCCC
Q psy10357        143 DVSPGFVLCDPN  154 (252)
Q Consensus       143 ~i~~G~vl~~~~  154 (252)
                      ++.+||+||+++
T Consensus       363 ~~~~GdtL~~~~  374 (720)
T TIGR00490       363 DAVAGETICTTV  374 (720)
T ss_pred             ccccCceeecCC
Confidence            678999999765

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes

Probab=98.46  E-value=2.2e-06  Score=60.43  Aligned_cols=66  Identities=27%  Similarity=0.394  Sum_probs=54.8

Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD  152 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~  152 (252)
                      ..|.+..+||.+|+|++||.|.....++..+|..|...    ..++++|.|||+++  +.++   ++..||+|++
T Consensus        12 ~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~---~~~~Gdtl~~   81 (81)
T cd04091          12 RFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI---DCASGDTFTD   81 (81)
T ss_pred             CCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC---CcccCCEecC
Confidence            35999999999999999999999888888888888664    35889999999887  4544   3788999874

Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.40  E-value=1.7e-07  Score=77.36  Aligned_cols=55  Identities=16%  Similarity=0.055  Sum_probs=46.4

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCc-cCchHHhhccCCC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWK-GGAFIPFIDALPS   63 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~-g~~L~~~l~~i~~   63 (252)
                      +.++.+++.+|+++++ +++++||||+||++|+|+.+     .++||+ |++|+++|+++.+
T Consensus       138 ~~~~~~i~~~l~~~g~-~~~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~  193 (195)
T cd01884         138 ELVEMEVRELLSKYGF-DGDNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP  193 (195)
T ss_pred             HHHHHHHHHHHHHhcc-cccCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence            4567789999999887 67789999999999999753     489998 7999999997643

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3)

Probab=98.31  E-value=4.2e-06  Score=59.63  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeC
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCD  152 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~  152 (252)
                      .|....+||.+|+|+.||.|.....++..+|..|...    ..++++|.|||++++.  +  .+++..||+||+
T Consensus        15 ~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--g--l~~~~~Gdtl~~   84 (85)
T cd03689          15 RDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--N--PGNFQIGDTLTE   84 (85)
T ss_pred             CcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--C--CCCccccCEeeC
Confidence            5899999999999999999988776666677777554    3588999999999873  3  357889999984

Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=2e-05  Score=76.32  Aligned_cols=117  Identities=25%  Similarity=0.356  Sum_probs=90.3

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC--------------------CCCCCCeeEEEeeEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN--------------------RKMDGPFLMPVVEKF   80 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~--------------------~~~~~p~~~~I~~~~   80 (252)
                      ...+|.+.-|++++.++..+             |..+++.+|.|.                    .+.+.||.+.+..+.
T Consensus       250 ~~~~pvl~gsa~kn~gv~~l-------------Ldav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~  316 (697)
T COG0480         250 GKIVPVLCGSAFKNKGVQPL-------------LDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM  316 (697)
T ss_pred             cceeeEEeeecccCCcHHHH-------------HHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence            34679999999999776542             333456677661                    123678999998876


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      .  ..|....+||-||+|+.||.++....++..+|..|...+    .+++++.|||++++  .|+  ++...|+++|+.+
T Consensus       317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~--~Gl--~~~~tGdTl~~~~  392 (697)
T COG0480         317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVAL--VGL--KDATTGDTLCDEN  392 (697)
T ss_pred             ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEE--Ecc--cccccCCeeecCC
Confidence            4  357877799999999999999988888889999997753    58899999999976  333  3568899999876

>KOG1145|consensus

Probab=97.97  E-value=1.9e-05  Score=73.01  Aligned_cols=98  Identities=26%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEee
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGE   95 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~   95 (252)
                      +.++++||+||++|+|+..+              .+++   ..+-.-+.+...|+.-.|.+.+  +|+|.+.|--|..|+
T Consensus       288 GGdVQvipiSAl~g~nl~~L--------------~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGT  353 (683)
T KOG1145|consen  288 GGDVQVIPISALTGENLDLL--------------EEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGT  353 (683)
T ss_pred             CCceeEEEeecccCCChHHH--------------HHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccc
Confidence            36789999999999999764              3432   2221223345778888888876  599999999999999


Q ss_pred             eecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEE
Q psy10357         96 AKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKV  134 (252)
Q Consensus        96 l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l  134 (252)
                      ++.|+-|..+  ..-.+|+++.-+ ++++++|.|++.|.+
T Consensus       354 LkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V  391 (683)
T KOG1145|consen  354 LKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEV  391 (683)
T ss_pred             cccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEe
Confidence            9999988874  467899999876 578999999998865

>KOG0465|consensus

Probab=97.80  E-value=9.7e-05  Score=69.21  Aligned_cols=116  Identities=22%  Similarity=0.318  Sum_probs=85.8

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC--------C------------CC-CCeeEEEeeE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR--------K------------MD-GPFLMPVVEK   79 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~--------~------------~~-~p~~~~I~~~   79 (252)
                      ..-+|++.-||++..|+..+             |..+++++|.|..        .            .+ +||.......
T Consensus       280 r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl  346 (721)
T KOG0465|consen  280 RSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL  346 (721)
T ss_pred             cceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence            45569999999999998643             5557888887721        0            11 1443332222


Q ss_pred             EcC-CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         80 FKD-MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        80 ~~g-~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      -.| .|..-.-||-+|+|+.||.|+-...+++++|-.+...|    ++++++.|||++++  .|+   |...||++++..
T Consensus       347 e~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDTftd~~  421 (721)
T KOG0465|consen  347 EEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDTFTDKQ  421 (721)
T ss_pred             eecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCceeccCc
Confidence            224 47777889999999999999999999999888775433    68999999999975  555   788899999873

>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p

Probab=97.75  E-value=0.00022  Score=51.55  Aligned_cols=66  Identities=24%  Similarity=0.413  Sum_probs=49.8

Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEec---------CCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCcccee
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMP---------NRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGF  148 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p---------~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~  148 (252)
                      ..|....+||.+|+|+.||.|.+..         .....+|..|....    .++++|.|||.|++.  ++  .++..|+
T Consensus        14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g~--~~~~~g~   89 (93)
T cd03700          14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--GL--DQLKSGT   89 (93)
T ss_pred             CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--CC--ccCceEe
Confidence            3588999999999999999998765         23346777776543    588999999999774  33  3567787


Q ss_pred             EEe
Q psy10357        149 VLC  151 (252)
Q Consensus       149 vl~  151 (252)
                      +.+
T Consensus        90 ~~~   92 (93)
T cd03700          90 TAT   92 (93)
T ss_pred             Eec
Confidence            643

During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=8.4e-05  Score=67.27  Aligned_cols=118  Identities=15%  Similarity=0.197  Sum_probs=87.4

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC-CCC--------CC---CeeEEEeeEE--cCCCe
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN-RKM--------DG---PFLMPVVEKF--KDMGT   85 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~-~~~--------~~---p~~~~I~~~~--~g~G~   85 (252)
                      ..+-.|++.-||+...|+...             |...++.-|+|. +..        +.   .|.|-|+---  +.+-+
T Consensus       247 ~G~~TPVFFGSAl~NFGV~~~-------------L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDR  313 (528)
T COG4108         247 AGELTPVFFGSALGNFGVDHF-------------LDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDR  313 (528)
T ss_pred             cCCccceEehhhhhccCHHHH-------------HHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccc
Confidence            367789999999999999764             334455556552 211        11   2444444322  14678


Q ss_pred             EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      +..-||.||+...|.++.....++.+++..-+.+    ++.++.|.|||.|+|.-.    --+..||+++..+
T Consensus       314 IAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh----G~~~IGDT~t~Ge  382 (528)
T COG4108         314 IAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH----GTIQIGDTFTEGE  382 (528)
T ss_pred             eeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCC----CceeecceeecCc
Confidence            8889999999999999999999999998887664    578999999999998644    4577899998764

>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p

Probab=97.50  E-value=0.0011  Score=47.92  Aligned_cols=51  Identities=25%  Similarity=0.418  Sum_probs=40.2

Q ss_pred             CeEEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEeCC----ccceeecCCCeEEE
Q psy10357         84 GTVVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWSDD----EEVSSVGPGENIKV  134 (252)
Q Consensus        84 G~vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~~~----~~v~~a~aG~~v~l  134 (252)
                      |....|||.+|+|+.||.|.+.-.+         ...+|..|....    .++++|.|||++++
T Consensus        16 ~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v   79 (94)
T cd04090          16 SFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI   79 (94)
T ss_pred             EEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence            5579999999999999999875321         346777776643    58899999999976

This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.46  E-value=0.00051  Score=65.79  Aligned_cols=79  Identities=20%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      -++.|..+|+  ..|.++..+|..|.++.|..+.++..+..   .+|.||+.+.++++++..|+-|++.+.+  ..|++.
T Consensus       493 g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~  570 (587)
T TIGR00487       493 GQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN--YNDIKE  570 (587)
T ss_pred             eeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec--cccCCC
Confidence            4566778886  34899999999999999999999987763   5799999999999999999999999994  579999


Q ss_pred             eeEEeC
Q psy10357        147 GFVLCD  152 (252)
Q Consensus       147 G~vl~~  152 (252)
                      ||+|-.
T Consensus       571 gD~i~~  576 (587)
T TIGR00487       571 GDIIEA  576 (587)
T ss_pred             CCEEEE
Confidence            999854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.45  E-value=0.00064  Score=66.46  Aligned_cols=82  Identities=15%  Similarity=0.051  Sum_probs=71.0

Q ss_pred             CCCeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCc
Q psy10357         69 DGPFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDV  144 (252)
Q Consensus        69 ~~p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i  144 (252)
                      ...-++.|..+|+ ..|.++.++|.+|.++.|..+.++..+..   .+|.||..+.+++.++..|.-|++.+.  +..|+
T Consensus       647 ~~~g~a~v~~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~--~~~d~  724 (742)
T CHL00189        647 VPIGEAEVKTVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIE--EFQLW  724 (742)
T ss_pred             eeceeEEeeEEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEee--CCCCC
Confidence            3445777889997 56899999999999999999999988864   579999999999999999999999998  56799


Q ss_pred             cceeEEeC
Q psy10357        145 SPGFVLCD  152 (252)
Q Consensus       145 ~~G~vl~~  152 (252)
                      +.||+|-.
T Consensus       725 ~~gD~ie~  732 (742)
T CHL00189        725 QSGDKIHA  732 (742)
T ss_pred             CcCCEEEE
Confidence            99999854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.00058  Score=63.33  Aligned_cols=98  Identities=22%  Similarity=0.350  Sum_probs=71.5

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh---ccCCCCCCCCCCCeeEEEeeEE--cCCCeEEEEEEEEee
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI---DALPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGE   95 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l---~~i~~~~~~~~~p~~~~I~~~~--~g~G~vv~G~v~~G~   95 (252)
                      ..++.|+|+||++|+|+.++              ++.+   ...-.-+...+.+.+-.|.++.  +|.|.+++--|.+|+
T Consensus       142 gg~v~~VpvSA~tg~Gi~eL--------------L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~Gt  207 (509)
T COG0532         142 GGDVIFVPVSAKTGEGIDEL--------------LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGT  207 (509)
T ss_pred             CCceEEEEeeccCCCCHHHH--------------HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCe
Confidence            35689999999999999874              3432   2221223345678888888886  499999999999999


Q ss_pred             eecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEE
Q psy10357         96 AKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKV  134 (252)
Q Consensus        96 l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l  134 (252)
                      +++||.+.+..  ...+|+.+... ..+++.|.++-.+.+
T Consensus       208 L~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i  245 (509)
T COG0532         208 LKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEI  245 (509)
T ss_pred             EecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEE
Confidence            99999999975  45566666553 467777777755543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.35  E-value=0.0014  Score=64.63  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=69.0

Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      -.+.|..+|+  ..|.+..++|..|.++.|..+.++-.++   ..+|.||..+.+++.++..|.-|++.+.+  ..|++.
T Consensus       695 g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~--~~d~~~  772 (787)
T PRK05306        695 GQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN--YNDIKE  772 (787)
T ss_pred             eeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeec--cccCCC
Confidence            3567788896  4589999999999999999999998876   46899999999999999999999999994  479999


Q ss_pred             eeEEeC
Q psy10357        147 GFVLCD  152 (252)
Q Consensus       147 G~vl~~  152 (252)
                      ||+|-.
T Consensus       773 gD~ie~  778 (787)
T PRK05306        773 GDIIEA  778 (787)
T ss_pred             CCEEEE
Confidence            999853

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.0055  Score=56.97  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             EEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc-e--EEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357         75 PVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT-P--VIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV  149 (252)
Q Consensus        75 ~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~-~--~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v  149 (252)
                      -+-.+|.  +.|.++...|..|.++.|..+.+.-.+. -  .+|.|++.+.++++++.+|.-|++.+++  ..+++.||+
T Consensus       417 ~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~  494 (509)
T COG0532         417 EVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDI  494 (509)
T ss_pred             EEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCE
Confidence            3445554  6799999999999999999999985553 3  6999999999999999999999999995  679999998


Q ss_pred             EeC
Q psy10357        150 LCD  152 (252)
Q Consensus       150 l~~  152 (252)
                      |-.
T Consensus       495 le~  497 (509)
T COG0532         495 LEV  497 (509)
T ss_pred             EEE
Confidence            753

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=96.81  E-value=0.0075  Score=57.86  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=61.6

Q ss_pred             eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeCC-CCccceeEEeCC
Q psy10357         78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCDP  153 (252)
Q Consensus        78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~  153 (252)
                      .+|+ ..+.++..+|..|.++.|..| +.+.+ ...+|.||+.+.+++++|.+|+-|++.+.+... .+++.||+|...
T Consensus       473 ~vf~~~~~~i~G~~V~~G~i~~~~~v-~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~  550 (590)
T TIGR00491       473 LVFRQSKPAIVGVEVLTGVIRQGYPL-MKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD  550 (590)
T ss_pred             eeeeCCCCeEEEEEEecCEEecCCeE-EecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence            6786 457888889999999999987 44444 356899999999999999999999999986322 689999999754

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.76  E-value=0.0075  Score=60.36  Aligned_cols=83  Identities=22%  Similarity=0.355  Sum_probs=57.0

Q ss_pred             CCCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC----ce-----EEEEEEEeC----CccceeecCCCeE
Q psy10357         69 DGPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR----TP-----VIVDQLWSD----DEEVSSVGPGENI  132 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~----~~-----~~V~sI~~~----~~~v~~a~aG~~v  132 (252)
                      +.|+.+.|..++.  ..|. ...+||.+|+|+.||.|++...+    +.     .+|..|...    ..++++|.|||++
T Consensus       373 ~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~  452 (843)
T PLN00116        373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTV  452 (843)
T ss_pred             CCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEE
Confidence            3578787877753  4576 89999999999999999865432    11     245444432    3689999999999


Q ss_pred             EEEEeeeCCCCccceeEEeCCC
Q psy10357        133 KVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus       133 ~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      ++.  |++ .-+..|++||+..
T Consensus       453 ai~--gl~-~~~~~gdTL~~~~  471 (843)
T PLN00116        453 AMV--GLD-QFITKNATLTNEK  471 (843)
T ss_pred             EEE--eec-ccccCCceecCCc
Confidence            773  332 1234588887765

>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2

Probab=96.53  E-value=0.024  Score=41.11  Aligned_cols=72  Identities=26%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             EEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC-ccceeecCCCeEEEEEeeeCCCCc-cceeEE
Q psy10357         75 PVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD-EEVSSVGPGENIKVKLKGIEEDDV-SPGFVL  150 (252)
Q Consensus        75 ~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl  150 (252)
                      .|.+..  ++.|.+.+.-|.+|+|++||.+....  ...+|+++.... .++++|.||+.|.+  .|++  ++ ..||.+
T Consensus         4 ~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~--~~P~aGd~~   77 (95)
T cd03702           4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLK--GVPQAGDKF   77 (95)
T ss_pred             EEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCC--CCCCCCCEE
Confidence            354554  48899999999999999999999865  456999998875 79999999999976  2332  33 456665


Q ss_pred             eC
Q psy10357        151 CD  152 (252)
Q Consensus       151 ~~  152 (252)
                      ..
T Consensus        78 ~~   79 (95)
T cd03702          78 LV   79 (95)
T ss_pred             EE
Confidence            43

IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.

>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B

Probab=96.35  E-value=0.052  Score=40.39  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             EEEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCc-----------cceeecCCCeEEEEEee
Q psy10357         74 MPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDE-----------EVSSVGPGENIKVKLKG  138 (252)
Q Consensus        74 ~~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~-----------~v~~a~aG~~v~l~l~~  138 (252)
                      -.|-++-  +|.|+++.--+.+|+|++||.+.+....  ...+||++.....           ++++|.|..-+.+...+
T Consensus         3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g   82 (110)
T cd03703           3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD   82 (110)
T ss_pred             EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence            3455554  4899999999999999999999998765  3579999988654           78888866666555554


Q ss_pred             eCCCCccceeEEe
Q psy10357        139 IEEDDVSPGFVLC  151 (252)
Q Consensus       139 ~~~~~i~~G~vl~  151 (252)
                      ++  ++..|+-+.
T Consensus        83 L~--~v~aG~~~~   93 (110)
T cd03703          83 LE--KAIAGSPLL   93 (110)
T ss_pred             Cc--cccCCCEEE
Confidence            43  445676553

aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.

>PRK04004 translation initiation factor IF-2; Validated

Probab=96.27  E-value=0.023  Score=54.64  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             eEEc-CCCeEEEEEEEEeeeecCCEEEEecCCc-eEEEEEEEeCCccceeecCCCeEEEEEeeeCC-CCccceeEEeC
Q psy10357         78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNRT-PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE-DDVSPGFVLCD  152 (252)
Q Consensus        78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~~-~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~  152 (252)
                      .+|+ ..+.++..+|..|.|+.|..|. .+.+. ..+|.||+.+.+++++|.+|+-|++.+.+... .++..||+|-.
T Consensus       475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~  551 (586)
T PRK04004        475 YVFRQSDPAIVGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV  551 (586)
T ss_pred             eeEecCCCeEEEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence            6786 4577888899999999998853 43443 46899999999999999999999999985321 68888998854

>KOG1144|consensus

Probab=96.10  E-value=0.0051  Score=59.26  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC---CC-CCCCCeeEEEeeEE--cCCCeEEEEEEEEe
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL---NR-KMDGPFLMPVVEKF--KDMGTVVMGKVESG   94 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~---~~-~~~~p~~~~I~~~~--~g~G~vv~G~v~~G   94 (252)
                      .+-+.++|+||.+|+|+.++              +-+|-.+...   .+ ..-.-++..|-++-  .|.|+.+-.-+..|
T Consensus       659 ~~~vsiVPTSA~sGeGipdL--------------l~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG  724 (1064)
T KOG1144|consen  659 GETVSIVPTSAISGEGIPDL--------------LLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNG  724 (1064)
T ss_pred             cceEEeeecccccCCCcHHH--------------HHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcc
Confidence            34578999999999999654              2322222100   00 11234678887774  59999999999999


Q ss_pred             eeecCCEEEEecCC----------------ceEEEEEEEeCCcc-------------ceeecCCCeEEE
Q psy10357         95 EAKKGQSLVLMPNR----------------TPVIVDQLWSDDEE-------------VSSVGPGENIKV  134 (252)
Q Consensus        95 ~l~~gd~v~i~p~~----------------~~~~V~sI~~~~~~-------------v~~a~aG~~v~l  134 (252)
                      .++.||.+.++-.+                +..+|++=+.|+..             ++.|.||-++-+
T Consensus       725 ~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V  793 (1064)
T KOG1144|consen  725 ELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV  793 (1064)
T ss_pred             eeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence            99999999987655                45688888887653             446777776643

>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B

Probab=96.03  E-value=0.061  Score=38.99  Aligned_cols=71  Identities=24%  Similarity=0.325  Sum_probs=52.7

Q ss_pred             EEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEE
Q psy10357         75 PVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVL  150 (252)
Q Consensus        75 ~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl  150 (252)
                      .|.+.-  +|.|.+.+.-|.+|+|++||.+....  ...+|+++... ++.+.+|.|++.|.+  .+.+ .....|+.+
T Consensus         4 ~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~GkVr~~~d~~g~~v~~a~Ps~~v~i--~g~~-~~p~aGd~~   77 (95)
T cd03701           4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG--TYGKIRTMVDENGKALLEAGPSTPVEI--LGLK-DVPKAGDGV   77 (95)
T ss_pred             EEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC--ccceEEEEECCCCCCccccCCCCCEEE--eeec-CCccCCCEE
Confidence            344543  48899999999999999999999854  57789999875 468999999998843  3332 223455544

IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.

>PTZ00416 elongation factor 2; Provisional

Probab=95.96  E-value=0.069  Score=53.52  Aligned_cols=82  Identities=21%  Similarity=0.351  Sum_probs=55.8

Q ss_pred             CCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC-----ce----EEEEEEEeC----CccceeecCCCeEE
Q psy10357         70 GPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR-----TP----VIVDQLWSD----DEEVSSVGPGENIK  133 (252)
Q Consensus        70 ~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~-----~~----~~V~sI~~~----~~~v~~a~aG~~v~  133 (252)
                      .|+.+.|..+..  ..|. +..+||.||+|+.||.|++...+     ..    .+|..|...    ..++++|.|||+++
T Consensus       370 ~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~  449 (836)
T PTZ00416        370 GPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVG  449 (836)
T ss_pred             CCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEE
Confidence            467666666542  4577 78999999999999999865433     11    235555443    36899999999998


Q ss_pred             EEEeeeCCCCccceeEEeCCC
Q psy10357        134 VKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus       134 l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      +.  |++..-...| +|++..
T Consensus       450 i~--gl~~~~~~tg-TL~~~~  467 (836)
T PTZ00416        450 LV--GVDQYLVKSG-TITTSE  467 (836)
T ss_pred             EE--ecccceecce-eecCCC
Confidence            73  4432225678 887665

>PRK14845 translation initiation factor IF-2; Provisional

Probab=95.83  E-value=0.038  Score=56.24  Aligned_cols=75  Identities=19%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeC-CCCccceeEEeCC
Q psy10357         78 EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIE-EDDVSPGFVLCDP  153 (252)
Q Consensus        78 ~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~  153 (252)
                      .+|+ ..+.++..+|..|.++.|..|. .+.+ ...+|.||+.+++++++|.+|+-|++.+.+.. ..++..||+|...
T Consensus       931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~-r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845        931 CIFRRSNPAIVGVEVLEGTLRVGVTLI-KEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred             eEEeCCCCeEEEEEEeeCEEecCcEEE-ecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEe
Confidence            6786 4578888899999999998774 3333 34689999999999999999999999998633 2588899998654

>KOG1144|consensus

Probab=93.56  E-value=0.17  Score=49.17  Aligned_cols=61  Identities=23%  Similarity=0.401  Sum_probs=49.2

Q ss_pred             eEEcCCCeEEEE-EEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeee
Q psy10357         78 EKFKDMGTVVMG-KVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGI  139 (252)
Q Consensus        78 ~~~~g~G~vv~G-~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~  139 (252)
                      .+|+.++.++.| .|..|.|++|..+-+ |..   .-.+|.||+++++++++|..|+-|++.+.+.
T Consensus       944 ~ifN~RdPiv~GV~V~~GilkiGTPiCv-~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~ 1008 (1064)
T KOG1144|consen  944 CIFNKRDPIVLGVDVEEGILKIGTPICV-PKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEAS 1008 (1064)
T ss_pred             hhccCCCCeEEEEEeecCeeecCCceEE-eccceeeeeeeeeecccCcccchhhcCCeEEEEEecC
Confidence            357666666555 899999999988765 444   2459999999999999999999999988743

>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology

Probab=92.46  E-value=1.1  Score=31.98  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        174 SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       174 ~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                      .++..|....+.+|+..+.++|.++.                    +|  .+++.|.+|+|.+..+
T Consensus        25 ~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~Pvc~~~g~   68 (88)
T PF09173_consen   25 EPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKKPVCAEKGE   68 (88)
T ss_dssp             ----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEE-STTS
T ss_pred             ccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecCCeEcCcCC
Confidence            36899999999999999999998752                    22  4577889999988765

It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....

>KOG0469|consensus

Probab=92.33  E-value=0.17  Score=47.23  Aligned_cols=82  Identities=20%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             CCCCCeeEEEeeEE--cCCCeE-EEEEEEEeeeecCCEEEEecCC------ceEEEEEEEe-------CCccceeecCCC
Q psy10357         67 KMDGPFLMPVVEKF--KDMGTV-VMGKVESGEAKKGQSLVLMPNR------TPVIVDQLWS-------DDEEVSSVGPGE  130 (252)
Q Consensus        67 ~~~~p~~~~I~~~~--~g~G~v-v~G~v~~G~l~~gd~v~i~p~~------~~~~V~sI~~-------~~~~v~~a~aG~  130 (252)
                      +.+.|+.|.|+..-  +++|+. ..|||.+|++..|+++.+.--+      ....+|+|+.       +-++++...+|+
T Consensus       373 D~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGN  452 (842)
T KOG0469|consen  373 DPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGN  452 (842)
T ss_pred             CCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCc
Confidence            46789999998875  377775 5899999999999999997433      2234455543       568999999999


Q ss_pred             eEEEEEeeeCCCCccceeEE
Q psy10357        131 NIKVKLKGIEEDDVSPGFVL  150 (252)
Q Consensus       131 ~v~l~l~~~~~~~i~~G~vl  150 (252)
                      +++|  -|++.--++.|-+-
T Consensus       453 IiGl--vGvDqfLvKtGTiT  470 (842)
T KOG0469|consen  453 IIGL--VGVDQFLVKTGTIT  470 (842)
T ss_pred             EEEE--eehhHhhhccCcee
Confidence            9986  46665555666543

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=89.43  E-value=0.24  Score=40.26  Aligned_cols=36  Identities=14%  Similarity=-0.143  Sum_probs=23.8

Q ss_pred             HHHHHhccccccc-ccCceeEEEecccccCCcccCCC
Q psy10357          6 KYAVSFWQPKLWT-VRQEILLIISPSGQMGQNLKEPV   41 (252)
Q Consensus         6 ~~~~~~~l~~~~~-~~~~~~~~ipiS~~~G~ni~~~~   41 (252)
                      ..++..+++.++. .+.-+++++++||++|+|+.+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         138 VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             HHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence            4455555554443 11235799999999999997663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
3j2k_7	439	Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ		7e-80
3e1y_E	204	Crystal Structure Of Human Erf1ERF3 COMPLEX Length		1e-70
1r5b_A	467	Crystal Structure Analysis Of Sup35 Length = 467		4e-46
3e20_A	201	Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt		2e-35
1jny_A	435	Crystal Structure Of Sulfolobus Solfataricus Elonga		6e-32
3agj_A	437	Crystal Structure Of Archaeal Pelota And Gtp-bound		3e-25
3vmf_A	440	Archaeal Protein Length = 440		3e-25
1f60_A	458	Crystal Structure Of The Yeast Elongation Factor Co		1e-22
3mca_A	592	Structure Of The Dom34-Hbs1 Complex And Implication		5e-12
3p27_A	483	Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd		6e-07
3p26_A	483	Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap		6e-07
3izq_1	611	Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To		9e-07
1exm_A	405	Crystal Structure Of Thermus Thermophilus Elongatio		3e-06
2c77_A	405	Ef-Tu Complexed With A Gtp Analog And The Antibioti		3e-06
2y0u_Z	405	The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou		3e-06
2c78_A	405	Ef-Tu Complexed With A Gtp Analog And The Antibioti		3e-06
2wrn_Z	406	The Crystal Structure Of The 70s Ribosome Bound To		4e-06
2y0y_Z	405	The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo		4e-06
1aip_A	405	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		4e-06
4abr_Z	405	Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir		4e-06
1ttt_A	405	Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com		4e-06
1eft_A	405	The Crystal Structure Of Elongation Factor Ef-Tu Fr		7e-06
1efm_A	379	Structure Of The Gdp Domain Of Ef-Tu And Location O		3e-05
1efc_A	393	Intact Elongation Factor From E.Coli Length = 393		3e-05
3u6b_A	394	Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028		3e-05
1dg1_G	394	Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len		3e-05
1ob2_A	393	E. Coli Elongation Factor Ef-Tu Complexed With The		3e-05
1d8t_A	393	Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M		3e-05
3mmp_A	678	Structure Of The Qb Replicase, An Rna-Dependent Rna		3e-05
2hdn_B	335	Trypsin-Modified Elongation Factor Tu In Complex Wi		3e-05
1efu_A	385	Elongation Factor Complex Ef-TuEF-Ts From Escherich		3e-05
2hcj_B	335	"trypsin-Modified Elongation Factor Tu In Complex W		3e-05
3agp_A	1289	Structure Of Viral Polymerase Form I Length = 1289		4e-05
1d2e_A	397	Crystal Structure Of Mitochondrial Ef-Tu In Complex		1e-04
1xb2_A	409	Crystal Structure Of Bos Taurus Mitochondrial Elong		2e-04

>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439

Iteration: 1
 Score =  293 bits (750), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           SG  G NLKE    + C W+ G  FIP++D LP+ NR +DGP  +P+V+K+KDMGTVV+G
Sbjct: 205 SGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLG 262
Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV 149
           K+ESG   KGQ LV+MPN+  V V  + SDD E   V PGEN+K++LKGIEE+++ PGF+
Sbjct: 263 KLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 322
Query: 150 LCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK 209
           LCDP+N   + R FD QIVI+EHKSIIC GY+AV+HIH   EEV + ALI L+DKK+GEK
Sbjct: 323 LCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEK 382
Query: 210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           SKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFTLRDE
Sbjct: 383 SKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 425

>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 204

Iteration: 1
 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 148/185 (80%)
Query: 68  MDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVG 127
           +  P  +P+V+K+KDMGTVV+GK+ESG   KGQ LV+MPN+  V V  + SDD E  +V 
Sbjct: 3   LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVA 62
Query: 128 PGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIH 187
           PGEN+K++LKGIEE+++ PGF+LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH
Sbjct: 63  PGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIH 122
Query: 188 CVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRF 247
              EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRF
Sbjct: 123 TCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRF 182
Query: 248 TLRDE 252
           TLRDE
Sbjct: 183 TLRDE 187

>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 3/224 (1%)
Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           S   GQN+K+ V   +C W++G + + ++D++  L RK++ PF+MP+  K+KD+GT++ G
Sbjct: 232 SAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEG 291
Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGF 148
           K+E+G  KK  ++++MP    + V  ++ + DEE+SS   G+ ++++++G ++ DV  G+
Sbjct: 292 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGY 350
Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
           VL    NP      F AQI ILE  SI+  GYS VMHIH   EEV+   L+  +D KT  
Sbjct: 351 VLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNR 409
Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KSK  P F  +    I  LE    +C+++F+ +  MGRFTLRD+
Sbjct: 410 KSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ 453

>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 201

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 3/184 (1%)
Query: 70  GPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGP 128
            PF+MP+  K+KD+GT++ GK+E+G  KK  ++++MP    + V  ++ + DEE+SS   
Sbjct: 6   APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSIC 65
Query: 129 GENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
           G+ ++++++G ++ DV  G+VL    NP      F AQI ILE  SI+  GYS VMHIH 
Sbjct: 66  GDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHT 124
Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFT 248
             EEV+   L+  +D KT  KSK  P F  +    I  LE    +C+++F+ +  MGRFT
Sbjct: 125 AVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFT 183
Query: 249 LRDE 252
           LRD+
Sbjct: 184 LRDQ 187

>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 15/232 (6%)
Query: 26  IISPSG----QMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEK 79
           +++PSG       +N+K         W+ G     ++D L    + +D P  +P+  V  
Sbjct: 192 VVAPSGDNITHKSENMK---------WYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYS 242
Query: 80  FKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGI 139
              +GTV +G+VESG  K G  +V MP      V  + +   ++    PG+NI   ++G+
Sbjct: 243 ISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGV 302
Query: 140 EEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALI 199
           E+ D+  G V+  PNNP   A  F A+I+++ H + +  GY+ V+H+H  +    V  L+
Sbjct: 303 EKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELV 362
Query: 200 CLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
             +D +TG++++  P+F+KQ  +AI++ +    +C++++  FP +GRF +RD
Sbjct: 363 SKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRD 414

>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+ G   +  +D L    + +D P  +PV  V      GTV +G+VE+G  + G  +V M
Sbjct: 209 WYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFM 268
Query: 106 PNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162
           P   P +V ++ S +   +++    PG+NI   ++G+ + D+  G V    + P   A  
Sbjct: 269 P---PGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEE 325
Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F+A+I ++ H S I  GY+ V+H+H  +    +  +   +D KTG+  +  P+F+K    
Sbjct: 326 FEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDA 385
Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
           AI+R +    + +++F   PQ+GRF +RD
Sbjct: 386 AIVRFKPVKPLVVEKFSEIPQLGRFAMRD 414

>pdb|3VMF|A Chain A, Archaeal Protein Length = 440

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+ G   +  +D L    + +D P  +PV  V      GTV +G+VE+G  + G  +V M
Sbjct: 212 WYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFM 271
Query: 106 PNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV 162
           P   P +V ++ S +   +++    PG+NI   ++G+ + D+  G V    + P   A  
Sbjct: 272 P---PGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEE 328
Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F+A+I ++ H S I  GY+ V+H+H  +    +  +   +D KTG+  +  P+F+K    
Sbjct: 329 FEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDA 388
Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRD 251
           AI+R +    + +++F   PQ+GRF +RD
Sbjct: 389 AIVRFKPVKPLVVEKFSEIPQLGRFAMRD 417

>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)
Query: 50  KGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPN 107
           KG   +  IDA+   +R  D P  +P+  V K   +GTV +G+VE+G  K G  +   P 
Sbjct: 222 KGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA 281
Query: 108 RTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFDAQ 166
                V  +    E++    PG+N+   +K +   ++  G V  D  N+P +    F+A 
Sbjct: 282 GVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNAT 341
Query: 167 IVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR 226
           +++L H   I AGYS V+  H          L+   D+++G+K +  P+F+K    A+++
Sbjct: 342 VIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVK 401
Query: 227 LEAAGVICLDQFKLFPQMGRFTLRD 251
              +  +C++ F  +P +GRF +RD
Sbjct: 402 FVPSKPMCVEAFSEYPPLGRFAVRD 426

>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 10/250 (4%)
Query: 3   ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALP 62
           + +K  VS +  K+   +   +  +  S   G NL +    ++  W+KG   +  +D L 
Sbjct: 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395
Query: 63  SLNRKMDGPFLMPVVEKFKDMGTV-VMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDE 121
              +    P  + + + ++   +V V G+VE+G  +  Q L  + ++    V  +  + +
Sbjct: 396 PPEKPYRKPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSD 455
Query: 122 EVSS-VGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGY 180
             S+    G+ + ++L  IE + + PG +L +  NP R  R F A+I   +    I +G 
Sbjct: 456 PSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGPILSGS 515
Query: 181 SAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL 240
           + V+H+      V++K  I  ++ K      +R R +    + I  L+    +CL +   
Sbjct: 516 TLVLHLGRTVTSVSLK--IVTVNNKRSRHIASRKRAL----VRISFLDGLFPLCLAE--E 567
Query: 241 FPQMGRFTLR 250
            P +GRF LR
Sbjct: 568 CPALGRFILR 577

>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 16/200 (8%)
Query: 69  DGPFLMPVVE-----KFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLW------ 117
           D PFL  V+E     K  +   +V GK+ESG  + G+SL + P+    IVD++       
Sbjct: 264 DDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323
Query: 118 --SDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA-RTARVFDAQIVILEHKS 174
             ++ EE      G+ + +KL+    +D+  G +    +  +  +A+ F  ++   +   
Sbjct: 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDXNR 383
Query: 175 IICAGYSAVMHIHCVAEEVNVKALICLIDK-KTGEKSKTRPRFVKQDQ-IAIMRLEAAGV 232
            +  G   ++ I    +   +K LI  IDK  T  K K R    KQ   + I  +E    
Sbjct: 384 PLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRW 443
Query: 233 ICLDQFKLFPQMGRFTLRDE 252
           I L       ++GR  LR +
Sbjct: 444 IPLLTAHENDRLGRVVLRKD 463

>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 19/227 (8%)
Query: 42  GPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVE-----KFKDMGTVVMGKVESGEA 96
           GP + +  +  AF         +N+  D PFL  V+E     K  +   +V GK+ESG  
Sbjct: 240 GPNLMSTLENAAF-KISKENEGINK--DDPFLFSVLEIIPSKKTSNDLALVSGKLESGSI 296
Query: 97  KKGQSLVLMPNRTPVIVDQLW--------SDDEEVSSVGPGENIKVKLKGIEEDDVSPGF 148
           + G+SL + P+    IVD++         ++ EE      G+ + +KL+    +D+  G 
Sbjct: 297 QPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGD 356
Query: 149 VLCDPNNPA-RTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK-KT 206
           +    +  +  +A+ F  ++   +    +  G   ++ I    +   +K LI  IDK  T
Sbjct: 357 LAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNT 416
Query: 207 GEKSKTRPRFVKQDQ-IAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             K K R    KQ   + I  +E    I L       ++GR  LR +
Sbjct: 417 ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD 463

>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 19/225 (8%)
Query: 42  GPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVE-----KFKDMGTVVMGKVESGEA 96
           GP + +  +  AF         +N+  D PFL  V+E     K  +   +V GK+ESG  
Sbjct: 374 GPNLMSTLENAAF-KISKENEGINK--DDPFLFSVLEIIPSKKTSNDLALVSGKLESGSI 430
Query: 97  KKGQSLVLMPNRTPVIVDQLW--------SDDEEVSSVGPGENIKVKLKGIEEDDVSPGF 148
           + G+SL + P+    IVD++         ++ EE      G+ + +KL+    +D+  G 
Sbjct: 431 QPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGD 490
Query: 149 VLCDPNNPA-RTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDK-KT 206
           +    +  +  +A+ F  ++   +    +  G   ++ I    +   +K LI  IDK  T
Sbjct: 491 LAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNT 550
Query: 207 GEKSKTRPRFVKQDQ-IAIMRLEAAGVICLDQFKLFPQMGRFTLR 250
             K K R    KQ   + I  +E    I L       ++GR  LR
Sbjct: 551 ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLR 595

>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 61  LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIVDQ 115
           +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V  
Sbjct: 210 IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTG 269
Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
           +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 270 VEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 61  LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIVDQ 115
           +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V  
Sbjct: 210 IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTG 269
Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
           +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 270 VEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 209 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVV 268
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 269 TGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 325

>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 61  LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIVDQ 115
           +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V  
Sbjct: 210 IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTG 269
Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
           +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 270 VEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ V L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ + L+G+  ++V  G VL  P +     + F+A + IL+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYILK 324

>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ + L+G+  ++V  G VL  P +     + F+A + IL+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYILK 324

>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 59  DALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLV---LMPNRTPVIV 113
           + +P+  R +D PFLMPV + F     GTV  G++E G+ K G  +    L P     +V
Sbjct: 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVV 267
Query: 114 DQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILE 171
             +    + +     G+N+ + L+G+  ++V  G VL  P +     + F+A + +L+
Sbjct: 268 TGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTK-FEASVYVLK 324

>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 180 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 239
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P       + F++++ 
Sbjct: 240 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGTIKPHTK-FESEVY 295
Query: 169 IL 170
           IL
Sbjct: 296 IL 297

>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 194 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 253
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 254 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 309
Query: 169 IL 170
           IL
Sbjct: 310 IL 311

>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 195 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 254
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 255 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 310
Query: 169 IL 170
           IL
Sbjct: 311 IL 312

>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 195 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 254
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 255 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 310
Query: 169 IL 170
           IL
Sbjct: 311 IL 312

>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 194 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 253
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 254 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 309
Query: 169 IL 170
           IL
Sbjct: 310 IL 311

>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 194 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 253
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 254 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 309
Query: 169 IL 170
           IL
Sbjct: 310 IL 311

>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 479 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 538
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P       + F++++ 
Sbjct: 539 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGTIKPHTK-FESEVY 594
Query: 169 IL 170
           IL
Sbjct: 595 IL 596

>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 136 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 195
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 196 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 251
Query: 169 IL 170
           IL
Sbjct: 252 IL 253

>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 186 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 245
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 246 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 301
Query: 169 IL 170
           IL
Sbjct: 302 IL 303

>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 136 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 195
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P    +    F++++ 
Sbjct: 196 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVY 251
Query: 169 IL 170
           IL
Sbjct: 252 IL 253

>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 57  FIDA-LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM-----PNR 108
           F+D+ +P   R +D PFL+P+ + F     GTVV G+VE G  K G+ + ++        
Sbjct: 479 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 538
Query: 109 TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIV 168
           T   V+      +E  +   GEN+ V L+GI+ +++  G VL  P       + F++++ 
Sbjct: 539 TCTGVEMFRKLLDEGRA---GENVGVLLRGIKREEIERGQVLAKPGTIKPHTK-FESEVY 594
Query: 169 IL 170
           IL
Sbjct: 595 IL 596

>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 61  LPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPV--IVDQL 116
           +P   R ++ PFL+PV  V      GTVV G +E G  KKG     + +   +  +V  +
Sbjct: 193 IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI 252
Query: 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
               + +     G+N+   ++G++ +D+  G V+  P +     +V +AQ+ IL
Sbjct: 253 EMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKV-EAQVYIL 305

>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 61  LPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPV--IVDQL 116
           +P   R ++ PFL+PV  V      GTVV G +E G  KKG     + +   +  +V  +
Sbjct: 204 IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI 263
Query: 117 WSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
               + +     G+N+   ++G++ +D+  G V   P +     +V +AQ+ IL
Sbjct: 264 EXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQPHQKV-EAQVYIL 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	2e-91
3e1y_E	204	Eukaryotic peptide chain release factor GTP-bindi	1e-85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	2e-85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	1e-79
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	2e-78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	5e-78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	3e-77
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	2e-20
1wb1_A	482	Translation elongation factor SELB; selenocysteine	2e-15
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	3e-15
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	1e-09
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	2e-09
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	5e-09
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	3e-06
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	9e-05
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	2e-04

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435

 Score =  275 bits (705), Expect = 2e-91
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVV 87
               G N+      E   W+ G     ++D L    + +D P  +P+ + +    +GTV 
Sbjct: 193 VAPSGDNITHK--SENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVP 250

Query: 88  MGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG 147
           +G+VESG  K G  +V MP      V  + +   ++    PG+NI   ++G+E+ D+  G
Sbjct: 251 VGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRG 310

Query: 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG 207
            V+  PNNP   A  F A+I+++ H + +  GY+ V+H+H  +    V  L+  +D +TG
Sbjct: 311 DVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTG 370

Query: 208 EKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           ++++  P+F+KQ  +AI++ +    +C++++  FP +GRF +RD 
Sbjct: 371 QEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM 415

>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Length = 204

 Score =  252 bits (647), Expect = 1e-85
 Identities = 121/184 (65%), Positives = 147/184 (79%)

Query: 69  DGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGP 128
             P  +P+V+K+KDMGTVV+GK+ESG   KGQ LV+MPN+  V V  + SDD E  +V P
Sbjct: 4   GSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAP 63

Query: 129 GENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
           GEN+K++LKGIEE+++ PGF+LCDPNN   + R FDAQIVI+EHKSIIC GY+AV+HIH 
Sbjct: 64  GENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHT 123

Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFT 248
             EEV + ALICL+DKK+GEKSKTRPRFVKQDQ+ I RL  AG ICL+ FK FPQMGRFT
Sbjct: 124 CIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFT 183

Query: 249 LRDE 252
           LRDE
Sbjct: 184 LRDE 187

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467

 Score =  261 bits (668), Expect = 2e-85
 Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 3/224 (1%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTVVMG 89
           S   GQN+K+ V   +C W++G + + ++D++  L RK++ PF+MP+  K+KD+GT++ G
Sbjct: 232 SAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEG 291

Query: 90  KVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGF 148
           K+E+G  KK  ++++MP    + V  ++ + DEE+SS   G+ ++++++G +  DV  G+
Sbjct: 292 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDS-DVQTGY 350

Query: 149 VLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGE 208
           VL    NP      F AQI ILE  SI+  GYS VMHIH   EEV+   L+  +D KT  
Sbjct: 351 VLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNR 409

Query: 209 KSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           KSK  P F  +    I  LE    +C+++F+ +  MGRFTLRD+
Sbjct: 410 KSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ 453

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458

 Score =  246 bits (629), Expect = 1e-79
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 17/238 (7%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGA------------FIPFIDALPSLNRKMDGPFLMPVV 77
           SG  G N+ E        W+KG               +  IDA+   +R  D P  +P+ 
Sbjct: 192 SGWNGDNMIEAT--TNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQ 249

Query: 78  EKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVK 135
           + +K   +GTV +G+VE+G  K G  +   P      V  +    E++    PG+N+   
Sbjct: 250 DVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFN 309

Query: 136 LKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVN 194
           +K +   ++  G V  D  N+P +    F+A +++L H   I AGYS V+  H       
Sbjct: 310 VKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACR 369

Query: 195 VKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
              L+   D+++G+K +  P+F+K    A+++   +  +C++ F  +P +GRF +RD 
Sbjct: 370 FDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDM 427

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483

 Score =  243 bits (623), Expect = 2e-78
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 25/247 (10%)

Query: 30  SGQMGQNL-KEPVGPEICTWWKGGAFIPFIDAL------PSLNRKMDGPFLMPV-----V 77
           SG  G+ + K     E+  W+ G   +  ++         +     D PFL  V      
Sbjct: 218 SGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPS 277

Query: 78  EKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQL--------WSDDEEVSSVGPG 129
           +K  +   +V GK+ESG  + G+SL + P+    IVD++         ++ EE      G
Sbjct: 278 KKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKG 337

Query: 130 ENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
           + + +KL+    +D+  G +      +   +A+ F  ++   +    +  G   ++ I  
Sbjct: 338 DFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGV 397

Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL---EAAGVICLDQFKLFPQMG 245
             +   +K LI  IDK      K + R +   Q A + +   E    I L       ++G
Sbjct: 398 KEQPARIKRLISFIDKGNTASKK-KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLG 456

Query: 246 RFTLRDE 252
           R  LR +
Sbjct: 457 RVVLRKD 463

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611

 Score =  245 bits (628), Expect = 5e-78
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 25/247 (10%)

Query: 30  SGQMGQNL-KEPVGPEICTWWKGGAFIPFIDAL------PSLNRKMDGPFLMPV-----V 77
           SG  G+ + K     E+  W+ G   +  ++         +     D PFL  V      
Sbjct: 352 SGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPS 411

Query: 78  EKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQL--------WSDDEEVSSVGPG 129
           +K  +   +V GK+ESG  + G+SL + P+    IVD++         ++ EE      G
Sbjct: 412 KKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKG 471

Query: 130 ENIKVKLKGIEEDDVSPGFVLCDP-NNPARTARVFDAQIVILEHKSIICAGYSAVMHIHC 188
           + + +KL+    +D+  G +      +   +A+ F  ++   +    +  G   ++ I  
Sbjct: 472 DFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGV 531

Query: 189 VAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL---EAAGVICLDQFKLFPQMG 245
             +   +K LI  IDK     SK + R +   Q A + +   E    I L       ++G
Sbjct: 532 KEQPARIKRLISFIDKGNT-ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLG 590

Query: 246 RFTLRDE 252
           R  LR +
Sbjct: 591 RVVLRKD 597

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592

 Score =  243 bits (622), Expect = 3e-77
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 30  SGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKDMGTV-VM 88
           S   G NL +    ++  W+KG   +  +D L    +    P  + + + ++   +V V 
Sbjct: 363 SAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVT 422

Query: 89  GKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVG-PGENIKVKLKGIEEDDVSPG 147
           G+VE+G  +  Q L  + ++    V  +  + +  S+    G+ + ++L  IE + + PG
Sbjct: 423 GRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482

Query: 148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTG 207
            +L +  NP R  R F A+I   +    I +G + V+H+      V++         K  
Sbjct: 483 DILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL---------KIV 533

Query: 208 EKSKTRPRFVKQDQIAIMRLE-AAGVICLDQFKLFPQMGRFTLRDE 252
             +  R R +   + A++R+    G+  L   +  P +GRF LR  
Sbjct: 534 TVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRS 579

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 38/207 (18%), Positives = 88/207 (42%), Gaps = 7/207 (3%)

Query: 48  WWKGGAFIPFIDALPSLNRKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLM 105
           W+ G + +  ++ +   + +       PV  V +         G + SG   KG  +V++
Sbjct: 220 WYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVL 279

Query: 106 PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
           P+     V  + + + E+   GPG+ + + ++  +E D+S G +L   +N  + +  FDA
Sbjct: 280 PSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVSDAFDA 337

Query: 166 QIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIM 225
            +V +  + ++  G    +         ++ ++   +D  T E+       ++ ++I  +
Sbjct: 338 MLVWMAEEPML-PGKKYDIKRATSYVPGSIASITHRVDVNTLEEGP--ASSLQLNEIGRV 394

Query: 226 RLEAAGVICLDQFKLFPQMGRFTLRDE 252
           ++     I LD +      G F + D 
Sbjct: 395 KVSLDAPIALDGYSSNRTTGAFIVIDR 421

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 62  PSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD 119
             + R  +  F MP+   F  K  GTVV G +  G  K G  L ++P      V  +   
Sbjct: 190 AEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF 249

Query: 120 DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
            E V     G+ + + ++G++   +  G +L   +   +T     A+I I 
Sbjct: 250 KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKIS 300

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 59  DALPSLNRKMD-GPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQ 115
           + + + N +++  P  + +   F     G VV+G V+ G +K      + P    + +  
Sbjct: 179 EKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRS 238

Query: 116 LWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVIL 170
           + S D ++ S   G  + ++LK ++  D+  GF++ D      T    +  +   
Sbjct: 239 IQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEI-VTTDYTLECTVSKF 292

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%)

Query: 61  LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQS--LV-LMPNRTPVIVD- 114
           +P   R +D PFL+P+ + F     GTVV G+VE G  K G+   +V +   +       
Sbjct: 484 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 543

Query: 115 -----QLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQIVI 169
                 L   DE  +    GEN+ V L+GI+ +++  G VL  P    +    F++++ I
Sbjct: 544 EMFRKLL---DEGRA----GENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVYI 595

Query: 170 L 170
           L
Sbjct: 596 L 596

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 25/124 (20%)

Query: 61  LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLM----PNRTPV--- 111
           +P   R ++ PFL+PV   +     GTVV G +E G  KKG     +      RT V   
Sbjct: 193 IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI 252

Query: 112 -----IVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDAQ 166
                 +D+  +          G+N+   ++G++ +D+  G V+  P +  +  +  +AQ
Sbjct: 253 EMFHKSLDRAEA----------GDNLGALVRGLKREDLRRGLVMAKPGS-IQPHQKVEAQ 301

Query: 167 IVIL 170
           + IL
Sbjct: 302 VYIL 305

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 26/125 (20%)

Query: 61  LPSLNRKMDGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQS-----LVLMPNRTPV-- 111
           +P+  R +D PFLMPV + F     GTV  G++E G+ K G       L     +T V  
Sbjct: 210 IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTG 269

Query: 112 ------IVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARVFDA 165
                  + +  +          G+N+ V L+G+  ++V  G VL  P +       F+A
Sbjct: 270 VEMHRKTLQEGIA----------GDNVGVLLRGVSREEVERGQVLAKPGS-ITPHTKFEA 318

Query: 166 QIVIL 170
            + +L
Sbjct: 319 SVYVL 323

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 33/147 (22%)

Query: 58  IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
           ID+L         +  R +    +M V+  F          +  G V+ G +  G  K  
Sbjct: 179 IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVD 238

Query: 100 QSLVLMPNRTPV------------IVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDV 144
           Q + ++P                  +  +   DEE     PG  + +       + + D 
Sbjct: 239 QEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADN 298

Query: 145 SPGFVLCDPNNPARTARVFDAQIVILE 171
             G ++   +           +  +LE
Sbjct: 299 LLGSIITLADAEVPVLWNIRIKYNLLE 325

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 37/150 (24%)

Query: 58  IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
           ID L        P+  R  D    M V   F             G V+ G +  G  K G
Sbjct: 185 IDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVG 244

Query: 100 QSLVLMPNRTPV------------IVDQLWSDDEEVSSVGPGENIKVK---LKGIEEDDV 144
             + + P                  +  L + +  +    PG  I V       + + D 
Sbjct: 245 DEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDA 304

Query: 145 SPGFVLCDPNN--PARTARVFDAQIVILEH 172
             G V+  P    P R       +  +L+ 
Sbjct: 305 LTGSVVGLPGTLPPIREK--ITIRANLLDR 332

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 37/149 (24%)

Query: 58  IDAL--------PSLNRKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKG 99
           ID L        P+  R  + P  M V+  F          K +G V+ G +  G+ K G
Sbjct: 187 IDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVG 246

Query: 100 QSLVLMPNRTPVIVDQLWSD------------DEEVSSVGPGENIKVKLK---GIEEDDV 144
             + + P        ++  +             + V    PG  + V  K    + + D+
Sbjct: 247 DEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDL 306

Query: 145 SPGFVLCDPNN--PARTARVFDAQIVILE 171
             G V+  P    P   +     ++ +LE
Sbjct: 307 MAGNVVGKPGKLPPVWDS--LRLEVHLLE 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	100.0
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	100.0
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	100.0
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	100.0
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	100.0
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	100.0
3e1y_E	204	Eukaryotic peptide chain release factor GTP-bindi	100.0
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	100.0
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	100.0
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	100.0
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	100.0
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	100.0
1wb1_A	482	Translation elongation factor SELB; selenocysteine	100.0
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	100.0
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.98
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.97
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.97
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.41
1xe1_A	116	Hypothetical protein PF0907; structural genomics,	99.36
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.32
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.25
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.22
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.2
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.18
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.16
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.12
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.1
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.04
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.96
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.88
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.65
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.1
1d1n_A	99	Initiation factor 2; beta-barrel, gene regulation;	97.82
2crv_A	120	IF-2MT, translation initiation factor IF-2; riboso	97.74
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.71
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.55
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.07
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	96.96
4he6_A	89	Peptidase family U32; ultra-tight crystal packing,	91.95

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.6e-53  Score=389.14  Aligned_cols=248  Identities=57%  Similarity=0.965  Sum_probs=235.1

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEcC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFKD   82 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~g   82 (252)
                      +.+..++..+++++++-..++++|+|+||++|+|+.++.  +.++||+|++|+++|+.+++|.+..+.||||+|+++|+|
T Consensus       178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~--~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~~  255 (439)
T 3j2k_7          178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS--DFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKD  255 (439)
T ss_pred             HHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc--ccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEcC
Confidence            456677888888888632347899999999999999987  789999999999999999999888999999999999999


Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV  162 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~  162 (252)
                      .|++++|+|++|.|++||.|.++|+++.++|++|+++++++++|.|||+|+|+|+|++..+++|||+||++++++..++.
T Consensus       256 ~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~  335 (439)
T 3j2k_7          256 MGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRT  335 (439)
T ss_pred             CCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCCceeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357        163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP  242 (252)
Q Consensus       163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~  242 (252)
                      |+|+|.||++++++.+||++.+|||+.+++|+|.+|.+++|.+||++.+..|++|+.||.+.|++++.+|+|+|+|++++
T Consensus       336 f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~  415 (439)
T 3j2k_7          336 FDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFP  415 (439)
T ss_pred             EEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEEEeeccccc
Confidence            99999999998889999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             CceeEEEEeC
Q psy10357        243 QMGRFTLRDE  252 (252)
Q Consensus       243 ~lgrfilrd~  252 (252)
                      .||||+|||+
T Consensus       416 ~~g~f~l~d~  425 (439)
T 3j2k_7          416 QMGRFTLRDE  425 (439)
T ss_pred             cCCCEEEEEC
Confidence            9999999995

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=100.00  E-value=4.6e-48  Score=358.32  Aligned_cols=246  Identities=22%  Similarity=0.332  Sum_probs=224.4

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCc---CCCCccCchHHhhccC----CC--CCCCCCCCee
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEI---CTWWKGGAFIPFIDAL----PS--LNRKMDGPFL   73 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~---~~w~~g~~L~~~l~~i----~~--~~~~~~~p~~   73 (252)
                      +.++.++..+++++++ .+++++|+|+||++|+|+.+++  ..   ++||+|++|+++|+.+    +.  |.+..+.|||
T Consensus       192 ~~i~~~~~~~l~~~g~-~~~~~~~i~iSA~~g~gi~el~--~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r  268 (483)
T 3p26_A          192 EEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKIE--YTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL  268 (483)
T ss_dssp             HHHHHHHHHHHHHHTC-CGGGEEEEECCSSSCTTSSSSC--CCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred             HHHHHHHHHHHHHcCC-CcccceEEEEeeecCCCccccC--cccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence            3456677777777775 4567899999999999999876  33   8999999999999887    22  4567889999


Q ss_pred             EEEeeEEc-----CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC--------ccceeecCCCeEEEEEeeeC
Q psy10357         74 MPVVEKFK-----DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--------EEVSSVGPGENIKVKLKGIE  140 (252)
Q Consensus        74 ~~I~~~~~-----g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~~~  140 (252)
                      |+|+++|+     |.|++++|+|++|.|++||.|.++|++..++|++|++++        +++++|.|||+|+|+|++++
T Consensus       269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~  348 (483)
T 3p26_A          269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY  348 (483)
T ss_dssp             EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred             EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence            99999996     479999999999999999999999999999999999995        89999999999999999988


Q ss_pred             CCCccceeEEeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecC
Q psy10357        141 EDDVSPGFVLCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ  219 (252)
Q Consensus       141 ~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~  219 (252)
                      ..+++|||+||++++ |+..+..|+|++.|++++.++.+|+++.+|+|+.+++|+|.+|.+++|.+|++. +..|++|++
T Consensus       349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~~l~~  427 (483)
T 3p26_A          349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGS  427 (483)
T ss_dssp             GGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCSCBCS
T ss_pred             cccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCccCcCC
Confidence            899999999999987 889999999999999988889999999999999999999999999999999876 567899999


Q ss_pred             CCEEEEEEEe---CceEEeeecCCCCCceeEEEEeC
Q psy10357        220 DQIAIMRLEA---AGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       220 g~~~~v~l~l---~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      ||.|.|++.+   .+|+|+|+|++++.||||+|||+
T Consensus       428 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~  463 (483)
T 3p26_A          428 KQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD  463 (483)
T ss_dssp             SCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEET
T ss_pred             CCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeC
Confidence            9999999999   88999999999999999999984

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=100.00  E-value=1e-47  Score=353.76  Aligned_cols=246  Identities=27%  Similarity=0.521  Sum_probs=230.1

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCc------------cCchHHhhccCCCCCCCCCCC
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWK------------GGAFIPFIDALPSLNRKMDGP   71 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~------------g~~L~~~l~~i~~~~~~~~~p   71 (252)
                      .+..+++.+++.+++ ++++++|+|+||++|+|+.++.  ..++||+            |++|+++|+.+++|.+..+.|
T Consensus       167 ~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~~--~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p  243 (458)
T 1f60_A          167 EIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEAT--TNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKP  243 (458)
T ss_dssp             HHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBCC--SSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSC
T ss_pred             HHHHHHHHHHHHcCC-CccCceEEEeecccCcCccccc--ccCchhhcccccccccccchHHHHHHhhccCCCcccCCCC
Confidence            455677777777775 4456899999999999999887  6799998            679999999999998889999


Q ss_pred             eeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeE
Q psy10357         72 FLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFV  149 (252)
Q Consensus        72 ~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v  149 (252)
                      |||+|+++|+  |.|++++|+|++|.+++||.|.++|.+..++|++|+.+++++++|.|||+|++.|+|++..++++|++
T Consensus       244 ~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v  323 (458)
T 1f60_A          244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV  323 (458)
T ss_dssp             CEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred             cEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence            9999999997  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357        150 LCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE  228 (252)
Q Consensus       150 l~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~  228 (252)
                      |+++++ |+..++.|+|++.||+++.++.+||++++|+|+.+++|+|..|.+++|.+|++..+..|++|++||.+.|+|.
T Consensus       324 l~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~  403 (458)
T 1f60_A          324 CGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFV  403 (458)
T ss_dssp             EEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEE
T ss_pred             EecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEE
Confidence            999975 8889999999999999888899999999999999999999999999999999988888899999999999999


Q ss_pred             eCceEEeeecCCCCCceeEEEEeC
Q psy10357        229 AAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       229 l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +.+|+|++.|++++.||||+|||.
T Consensus       404 ~~~p~~~~~~~~~~~~grf~lr~~  427 (458)
T 1f60_A          404 PSKPMCVEAFSEYPPLGRFAVRDM  427 (458)
T ss_dssp             ESSCCCCCCTTTCGGGSEEEEEET
T ss_pred             ECCeEEEecCccCCCCCcEEEEEC
Confidence            999999999999999999999984

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=100.00  E-value=2.1e-47  Score=349.67  Aligned_cols=247  Identities=28%  Similarity=0.574  Sum_probs=230.9

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      +.+..+++.+++.+++ .+.+++++|+||++|+|+.+..  ..++||+|++|+++|+.+++|.+..+.||+|+|+++|+ 
T Consensus       167 ~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~~--~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~  243 (435)
T 1jny_A          167 KEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHKS--ENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI  243 (435)
T ss_dssp             HHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBCC--SSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCC-CcCCceEEEeecccCccccccc--cccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEe
Confidence            3456778888887775 4456899999999999999886  66899999999999999988887778999999999997 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA  160 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~  160 (252)
                       |.|++++|+|.+|+|++||.|.++|.+...+|++|+++++++++|.|||+|++.|+|++..++++||+||++++++..+
T Consensus       244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~  323 (435)
T 1jny_A          244 SGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVA  323 (435)
T ss_dssp             TTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCCEE
T ss_pred             CCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCceEe
Confidence             8899999999999999999999999999999999999999999999999999999999889999999999998888999


Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL  240 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~  240 (252)
                      ..|.|++.|++++.++.+|+++++|+|+.+++|+|..|.+++|.+|++..+..|++|++||.+.|+|++.+|+|++.|++
T Consensus       324 ~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~  403 (435)
T 1jny_A          324 DEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNE  403 (435)
T ss_dssp             SEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTT
T ss_pred             EEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCc
Confidence            99999999999888899999999999999999999999999999999888878899999999999999999999999999


Q ss_pred             CCCceeEEEEeC
Q psy10357        241 FPQMGRFTLRDE  252 (252)
Q Consensus       241 ~~~lgrfilrd~  252 (252)
                      ++.||||+|||.
T Consensus       404 ~~~~grf~lr~~  415 (435)
T 1jny_A          404 FPPLGRFAMRDM  415 (435)
T ss_dssp             SGGGTEEEEEET
T ss_pred             CCcCccEEEEEC
Confidence            999999999984

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=100.00  E-value=8.5e-49  Score=361.72  Aligned_cols=246  Identities=36%  Similarity=0.688  Sum_probs=228.2

Q ss_pred             hHHHHHHhccccc-cccc-CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc
Q psy10357          4 SVKYAVSFWQPKL-WTVR-QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~-~~~~-~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      .+..++..+++++ ++ . ..+++|+|+||++|+|+.++.....++||+|++|+++|+.++.|.++.+.||+|+|+++|+
T Consensus       205 ~i~~e~~~~l~~~~g~-~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~  283 (467)
T 1r5b_A          205 ECVDKLSMFLRRVAGY-NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK  283 (467)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE
T ss_pred             HHHHHHHHHHHHhcCC-CccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe
Confidence            4556788888777 54 2 2478999999999999988764457899999999999999998888888999999999999


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC-CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA  160 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~  160 (252)
                      +.|++++|+|.+|.|++||.|.++|.++.++|++|+++ ++++++|.|||+|+++|+| +..++++||+||++++++..+
T Consensus       284 ~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~  362 (467)
T 1r5b_A          284 DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHAT  362 (467)
T ss_dssp             SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSCCCEE
T ss_pred             CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCCCccc
Confidence            99999999999999999999999999999999999998 8999999999999999999 889999999999999889999


Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL  240 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~  240 (252)
                      +.|+|++.||++++++.+||++.+|+|+.+++|++..|.+.+|. +|++.+..|++|++||.+.|+|.+++|+|++.|++
T Consensus       363 ~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~  441 (467)
T 1r5b_A          363 TRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFED  441 (467)
T ss_dssp             EEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTT
T ss_pred             eEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEEEEEcCc
Confidence            99999999999988899999999999999999999999888998 88887778899999999999999999999999999


Q ss_pred             CCCceeEEEEeC
Q psy10357        241 FPQMGRFTLRDE  252 (252)
Q Consensus       241 ~~~lgrfilrd~  252 (252)
                      ++.||||+|||+
T Consensus       442 ~~~~grf~lrd~  453 (467)
T 1r5b_A          442 YQYMGRFTLRDQ  453 (467)
T ss_dssp             CHHHHEEEEECS
T ss_pred             CCCCccEEEEEC
Confidence            999999999985

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-47  Score=359.11  Aligned_cols=248  Identities=22%  Similarity=0.333  Sum_probs=224.2

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCC-CcCCCCccCchHHhhccC--CC----CCCCCCCCeeEE
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGP-EICTWWKGGAFIPFIDAL--PS----LNRKMDGPFLMP   75 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~-~~~~w~~g~~L~~~l~~i--~~----~~~~~~~p~~~~   75 (252)
                      +.+..++..++++++. .+.+++|+|+||++|+|+.+++.. ..++||+||+|.++|+.+  ..    |.+..+.||||+
T Consensus       326 ~ei~~~l~~~l~~~g~-~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~  404 (611)
T 3izq_1          326 EEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS  404 (611)
T ss_dssp             HHHHHHHHHHHHHHTC-CGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEE
T ss_pred             HHHHHHHHHHHHhhcc-cccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhh
Confidence            3456677777777775 455789999999999999987522 228999999999999988  22    345678999999


Q ss_pred             EeeEEc-----CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC--------ccceeecCCCeEEEEEeeeCCC
Q psy10357         76 VVEKFK-----DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--------EEVSSVGPGENIKVKLKGIEED  142 (252)
Q Consensus        76 I~~~~~-----g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~~~~~  142 (252)
                      |+++|+     |.|++++|+|++|.|++||.|.++|++..++|++|++++        .++++|.|||+|+|+|++++..
T Consensus       405 V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~  484 (611)
T 3izq_1          405 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE  484 (611)
T ss_dssp             CCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTT
T ss_pred             eeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHh
Confidence            999996     478999999999999999999999999999999999995        8999999999999999999899


Q ss_pred             CccceeEEeCCCC-CcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCC
Q psy10357        143 DVSPGFVLCDPNN-PARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQ  221 (252)
Q Consensus       143 ~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~  221 (252)
                      +++||++||+++. |+..+..|+|+|.|++++.+|.+|+++++|+|+.+++|+|..|.+++|.+|++. +..|++|++||
T Consensus       485 di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~~l~~~d  563 (611)
T 3izq_1          485 DIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIRHLGSKQ  563 (611)
T ss_dssp             SCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSCSSSSCC
T ss_pred             hCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCccccCCCC
Confidence            9999999999987 889999999999999988899999999999999999999999999999999987 66789999999


Q ss_pred             EEEEEEEe---CceEEeeecCCCCCceeEEEEeC
Q psy10357        222 IAIMRLEA---AGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       222 ~~~v~l~l---~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      .|.|+|.+   .+|+|+++|++++.||||+|||.
T Consensus       564 ~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~  597 (611)
T 3izq_1          564 RAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD  597 (611)
T ss_dssp             SEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESS
T ss_pred             EEEEEEEECCCCCceEEeecccCCCCCcEEEEeC
Confidence            99999999   78999999999999999999974

>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=310.68  Aligned_cols=185  Identities=65%  Similarity=1.108  Sum_probs=176.8

Q ss_pred             CCCCeeEEEeeEEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         68 MDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        68 ~~~p~~~~I~~~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      .++||||+|+++|+|.|++++|+|++|.+++||.|.++|+++.++|++|+++++++++|.|||+|+|+|+|++..|++||
T Consensus         3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG   82 (204)
T 3e1y_E            3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG   82 (204)
T ss_dssp             ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred             CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeCCCCCcceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEE
Q psy10357        148 FVLCDPNNPARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRL  227 (252)
Q Consensus       148 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l  227 (252)
                      |+||++++++..++.|+|++.||++++++.+||++.+|+|+.+++|+|.+|.+++|.+||++.+..|++|++||.|.|+|
T Consensus        83 ~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l  162 (204)
T 3e1y_E           83 FILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL  162 (204)
T ss_dssp             CEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEE
T ss_pred             eEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEE
Confidence            99999999888999999999999998889999999999999999999999999999999998888899999999999999


Q ss_pred             EeCceEEeeecCCCCCceeEEEEeC
Q psy10357        228 EAAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       228 ~l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      ++++|+|+|+|++++.||||+|||+
T Consensus       163 ~~~~pi~~e~~~~~~~~Grfilrd~  187 (204)
T 3e1y_E          163 RTAGTICLETFKDFPQMGRFTLRDE  187 (204)
T ss_dssp             EESSCCCCCCTTSSGGGTEEEEECS
T ss_pred             EECCeEEEEEcccCcCCCCEEEEEC
Confidence            9999999999999999999999985

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=100.00  E-value=8.3e-45  Score=332.39  Aligned_cols=240  Identities=18%  Similarity=0.281  Sum_probs=220.7

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--C
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--D   82 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g   82 (252)
                      +..++..+++.+++ +..+++++|+||++|+|+.++.  ..++||+|++|+++|+.++.|.+..+.||||+|+++|+  +
T Consensus       180 i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~--~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~  256 (434)
T 1zun_B          180 IKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS--ERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNL  256 (434)
T ss_dssp             HHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC--TTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSS
T ss_pred             HHHHHHHHHHHhCC-CccCceEEEEeccCCCCccccc--ccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCC
Confidence            45667777777763 3467899999999999999887  78999999999999999998888889999999999986  5


Q ss_pred             CCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCcceecE
Q psy10357         83 MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTARV  162 (252)
Q Consensus        83 ~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~  162 (252)
                      .|+.+.|+|.+|+|++||.|.++|+++.++|++|+.++.++++|.|||+|+++++  +..++++||+|++++.++..++.
T Consensus       257 ~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~~~  334 (434)
T 1zun_B          257 NFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVSDA  334 (434)
T ss_dssp             SCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCCEEEE
T ss_pred             CceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCCcccE
Confidence            6788999999999999999999999999999999999999999999999999998  56789999999999998899999


Q ss_pred             EEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCCCC
Q psy10357        163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFP  242 (252)
Q Consensus       163 f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~  242 (252)
                      |+|++.|++ +.++.+|+++++|+|+.+++|+|..+.+++|.+|+++  ..+++|++||.+.|+|++++|+|+++|++++
T Consensus       335 f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~  411 (434)
T 1zun_B          335 FDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLNEIGRVKVSLDAPIALDGYSSNR  411 (434)
T ss_dssp             EEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTTCEEEEEEEEEEEEECCCTTTCT
T ss_pred             EEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCCCEEEEEEEECCeEEEcccccCC
Confidence            999999997 5579999999999999999999999999999999884  4578999999999999999999999999999


Q ss_pred             CceeEEEEeC
Q psy10357        243 QMGRFTLRDE  252 (252)
Q Consensus       243 ~lgrfilrd~  252 (252)
                      .||||+|||+
T Consensus       412 ~~grf~l~d~  421 (434)
T 1zun_B          412 TTGAFIVIDR  421 (434)
T ss_dssp             TTTEEEEECT
T ss_pred             ccceEEEEEC
Confidence            9999999984

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-44  Score=341.69  Aligned_cols=239  Identities=22%  Similarity=0.400  Sum_probs=218.5

Q ss_pred             hHHHHHHhcc-cccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc-
Q psy10357          4 SVKYAVSFWQ-PKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK-   81 (252)
Q Consensus         4 ~~~~~~~~~l-~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~-   81 (252)
                      .+..++..++ +.+++ ..++++|+|+||++|+|+.+++....++||+|++|++.|+.+.+|.+..+.||+|+|+++|+ 
T Consensus       337 ~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~~v~~~  415 (592)
T 3mca_A          337 EIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRS  415 (592)
T ss_dssp             HHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhCC-CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchheeeEEEec
Confidence            4567777777 77775 56788999999999999988764347999999999999999877888889999999999997 


Q ss_pred             CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccce-eecCCCeEEEEEeeeCCCCccceeEEeCCCCCccee
Q psy10357         82 DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVS-SVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA  160 (252)
Q Consensus        82 g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~  160 (252)
                      |.|++++|+|.+|.|++||.|.++|.+..++|++|++++++++ +|.|||+|+++|+|++..++++||+||+++.|+..+
T Consensus       416 ~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~  495 (592)
T 3mca_A          416 PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRV  495 (592)
T ss_dssp             TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSCCEEE
T ss_pred             CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCCcccc
Confidence            7899999999999999999999999999999999999999999 999999999999999999999999999999988999


Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE-eCceEEeeecC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE-AAGVICLDQFK  239 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~~~  239 (252)
                      ..|+|++.||+++.++.+|+++++|+|+.+++|+| .|...        .+..+++|++||.+.|+|. +.+|+|+|+|+
T Consensus       496 ~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~  566 (592)
T 3mca_A          496 RSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKRALVRISFLDGLFPLCLAE  566 (592)
T ss_dssp             SEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCEEEEEEEESSSCEEECCTT
T ss_pred             CeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCCCCEEEEEEEECCCcEEEEecc
Confidence            99999999999988899999999999999999999 77541        1335689999999999999 99999999999


Q ss_pred             CCCCceeEEEEeC
Q psy10357        240 LFPQMGRFTLRDE  252 (252)
Q Consensus       240 ~~~~lgrfilrd~  252 (252)
                      +++.+|||+|||.
T Consensus       567 ~~~~~~rfilr~~  579 (592)
T 3mca_A          567 ECPALGRFILRRS  579 (592)
T ss_dssp             TCHHHHEEEEESS
T ss_pred             CCCCCCeEEEEEC
Confidence            9999999999973

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=100.00  E-value=2.9e-37  Score=280.03  Aligned_cols=228  Identities=21%  Similarity=0.321  Sum_probs=196.8

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCC---CCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEee
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVG---PEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVE   78 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~---~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~   78 (252)
                      .+..++..+++++++ ..++++++|+||++|+|+.+.+.   +..++||.+ ..|++.|.. +|.|.+..+.||+|+|++
T Consensus       149 ~~~~~~~~~l~~~~~-~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~  227 (405)
T 2c78_A          149 LVEMEVRDLLNQYEF-PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVED  227 (405)
T ss_dssp             HHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCE
T ss_pred             HHHHHHHHHHHHhcc-cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEE
Confidence            345577777877764 44568999999999998643321   135789976 567777766 888888889999999999


Q ss_pred             EEc--CCCeEEEEEEEEeeeecCCEEEEecCC---ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNR---TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~---~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      +|+  |.|++++|+|.+|+|++||.|.++|.+   ..++|++|+++++++++|.|||+|++.|+|++..++++||+||++
T Consensus       228 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~  307 (405)
T 2c78_A          228 VFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP  307 (405)
T ss_dssp             EEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEEST
T ss_pred             EEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcC
Confidence            996  889999999999999999999999998   699999999999999999999999999999999999999999999


Q ss_pred             CCCcceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEE
Q psy10357        154 NNPARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLE  228 (252)
Q Consensus       154 ~~~~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~  228 (252)
                      +. +..++.|+|++.||+++     .++.+||++.+|+++.+++|+|. +.   +         .++++++||.+.|+|+
T Consensus       308 ~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~---~---------~~~~l~~~~~~~v~~~  373 (405)
T 2c78_A          308 GS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP---P---------GVEMVMPGDNVTFTVE  373 (405)
T ss_dssp             TS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC---T---------TCCCBCTTCEEEEEEE
T ss_pred             CC-CceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec---c---------CccccCCCCEEEEEEE
Confidence            85 67899999999999854     57999999999999999999987 31   1         2368999999999999


Q ss_pred             eCceEEeeecCCCCCceeEEEEeC
Q psy10357        229 AAGVICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       229 l~~~i~~~~~~~~~~lgrfilrd~  252 (252)
                      +.+|+|++.+      +||+|||.
T Consensus       374 ~~~p~~~~~~------~rf~lr~~  391 (405)
T 2c78_A          374 LIKPVALEEG------LRFAIREG  391 (405)
T ss_dssp             EEEEEEECTT------CEEEEEET
T ss_pred             ECceEEEccC------CEEEEEcC
Confidence            9999999987      59999984

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=100.00  E-value=6.7e-37  Score=277.02  Aligned_cols=222  Identities=21%  Similarity=0.295  Sum_probs=195.6

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc--CchHHhhcc-CCCCCCCCCCCeeEEEeeEE
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG--GAFIPFIDA-LPSLNRKMDGPFLMPVVEKF   80 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g--~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~   80 (252)
                      .+..++..+++++++ .+++++++|+||++|+|.      .+++||.|  ..|++.|.. ++.|.++.+.||+|+|+++|
T Consensus       140 ~~~~~~~~~l~~~~~-~~~~~~~i~~SA~~g~n~------~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~  212 (397)
T 1d2e_A          140 LVELEIRELLTEFGY-KGEETPIIVGSALCALEQ------RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVY  212 (397)
T ss_dssp             HHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHTT------CCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEE
T ss_pred             HHHHHHHHHHHHcCC-CcccCcEEEeehhhcccc------cCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEE
Confidence            355677888887775 455789999999999984      34789987  678887766 88888888999999999999


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +  |.|++++|+|.+|.|++||.|.++|.+  +.++|++|+++++++++|.|||+|++.|+|++..++++||+||+++. 
T Consensus       213 ~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~-  291 (397)
T 1d2e_A          213 SIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGS-  291 (397)
T ss_dssp             EETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS-
T ss_pred             EeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCC-
Confidence            6  899999999999999999999999986  78999999999999999999999999999998899999999999885 


Q ss_pred             cceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357        157 ARTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG  231 (252)
Q Consensus       157 ~~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~  231 (252)
                      +..++.|+|++.||+++     .++.+|+++.+|+++.+++|+|. +.   +         .++++++||.+.|+|++.+
T Consensus       292 ~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~---~---------~~~~l~~~~~~~v~~~~~~  358 (397)
T 1d2e_A          292 IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP---P---------GKELAMPGEDLKLTLILRQ  358 (397)
T ss_dssp             CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC---S---------SCCCBCTTCEEEEEEEEEE
T ss_pred             CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec---C---------CcccccCCCEEEEEEEECC
Confidence            67789999999999874     57999999999999999999987 31   1         2478999999999999999


Q ss_pred             eEEeeecCCCCCceeEEEEeC
Q psy10357        232 VICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       232 ~i~~~~~~~~~~lgrfilrd~  252 (252)
                      |+|++.+      +||+|||.
T Consensus       359 p~~~~~~------~r~~lr~~  373 (397)
T 1d2e_A          359 PMILEKG------QRFTLRDG  373 (397)
T ss_dssp             EECCCTT------CEEEEEET
T ss_pred             eEEEccC------CeEEEEeC
Confidence            9999986      59999973

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=100.00  E-value=7.7e-34  Score=254.59  Aligned_cols=217  Identities=16%  Similarity=0.238  Sum_probs=177.9

Q ss_pred             HHHHHHhcccccccccCceeEEEe--ccccc---CCcccCCCCCCcCCCCccCchHHhhccCCCCCCC-CCCCeeEEEee
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIIS--PSGQM---GQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRK-MDGPFLMPVVE   78 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ip--iS~~~---G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~-~~~p~~~~I~~   78 (252)
                      +..+++++++..+.   +.+|++|  +||++   |+|+.++.          ..|.+.+.....+... ...|+|++|++
T Consensus       133 ~~~~i~~~l~~~~~---~~~~ii~~~~SA~~~~~g~gi~~L~----------~~l~~~~~~~~~~~~~~~~~p~r~~v~~  199 (370)
T 2elf_A          133 LKAKLKVITSGTVL---QDWECISLNTNKSAKNPFEGVDELK----------ARINEVAEKIEAENAELNSLPARIFIDH  199 (370)
T ss_dssp             HHHHHHHHTTTSTT---TTCEEEECCCCTTSSSTTTTHHHHH----------HHHHHHHHHHHHHHHHGGGSCCEEEEEE
T ss_pred             HHHHHHHHHHhcCC---CceEEEecccccccCcCCCCHHHHH----------HHHHhhccccccCCccccccccccccee
Confidence            45677777776653   5679999  99999   88886531          0122222221111122 45678999999


Q ss_pred             EEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +|+  |.|++++|+|.+|.+++||+|.++|.+...+|++|+++++++++|.|||+|++.|++++..++++||+|++  .+
T Consensus       200 vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~--~~  277 (370)
T 2elf_A          200 AFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD--KE  277 (370)
T ss_dssp             EECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--CC
T ss_pred             EEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--CC
Confidence            997  88999999999999999999999999999999999999999999999999999999998899999999998  55


Q ss_pred             cceecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEee
Q psy10357        157 ARTARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLD  236 (252)
Q Consensus       157 ~~~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~  236 (252)
                       ..++.|+|++.|++++.++.+|+++.+|+|+.+++|+|..+..  |.+ ++      +.+.+||.+.|+|++++|+|++
T Consensus       278 -~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~pi~~~  347 (370)
T 2elf_A          278 -IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKKLAYS  347 (370)
T ss_dssp             -EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEEEEEC
T ss_pred             -ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcEEEEe
Confidence             8899999999999988889999999999999999999998753  332 21      2356899999999999999999


Q ss_pred             ecCCCCCceeEEEEeC
Q psy10357        237 QFKLFPQMGRFTLRDE  252 (252)
Q Consensus       237 ~~~~~~~lgrfilrd~  252 (252)
                      .|+      ||+|||.
T Consensus       348 ~~~------rfilr~~  357 (370)
T 2elf_A          348 KQD------RFLLANL  357 (370)
T ss_dssp             TTS------CEEEECT
T ss_pred             CCC------EEEEEEC
Confidence            987      9999984

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=100.00  E-value=2.6e-35  Score=272.61  Aligned_cols=222  Identities=17%  Similarity=0.194  Sum_probs=192.3

Q ss_pred             hhHHHHHHhccccc-ccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCC--CCCCCCCeeEEEee
Q psy10357          3 ESVKYAVSFWQPKL-WTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSL--NRKMDGPFLMPVVE   78 (252)
Q Consensus         3 ~~~~~~~~~~l~~~-~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~--~~~~~~p~~~~I~~   78 (252)
                      +.+..++..+++.. ++   .+++++|+||++|+|+.+              |++.|.. ++.|  .++.+.||+|+|++
T Consensus       144 ~~~~~~l~~~l~~~~~~---~~~~ii~vSA~~g~gI~~--------------L~~~L~~~i~~~~~~~~~~~~~~~~v~~  206 (482)
T 1wb1_A          144 KRTEMIMKSILQSTHNL---KNSSIIPISAKTGFGVDE--------------LKNLIITTLNNAEIIRNTESYFKMPLDH  206 (482)
T ss_dssp             HHHHHHHHHHHHHSSSG---GGCCEEECCTTTCTTHHH--------------HHHHHHHHHHHSCCCCCSSSCCBCBCSC
T ss_pred             HHHHHHHHHHHhhhccc---ccceEEEEECcCCCCHHH--------------HHHHHHHhhcCcccccccccccccccee
Confidence            34556677777666 44   367999999999999976              4555544 3333  66778899999999


Q ss_pred             EEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEE-eCCCC
Q psy10357         79 KFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVL-CDPNN  155 (252)
Q Consensus        79 ~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~  155 (252)
                      +|+  |.|++++|+|.+|.+++||.|.++|.+..++|++|+.+++++++|.|||+|++.+++++..++++||+| ++++ 
T Consensus       207 v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~-  285 (482)
T 1wb1_A          207 AFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDT-  285 (482)
T ss_dssp             EECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTC-
T ss_pred             EEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCC-
Confidence            996  899999999999999999999999999999999999999999999999999999999988999999999 5554 


Q ss_pred             CcceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEE-EeecccCCcccccCCceecCCCEEEEEEEeCceE
Q psy10357        156 PARTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALI-CLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVI  233 (252)
Q Consensus       156 ~~~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~-~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i  233 (252)
                      ++..++.|+|++.|+++ +.++.+|+++++|+|+.+++|+|..+. +++|.+++...   +++|++||.+.|+|++++|+
T Consensus       286 ~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~---~~~l~~g~~~~v~l~~~~pv  362 (482)
T 1wb1_A          286 KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENII---LNEVISGNEXYXAFELEEKV  362 (482)
T ss_dssp             CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEE---CCSSCCSSCCCEEEEEEEEE
T ss_pred             CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEecccccccccccc---chhhcCCCEEEEEEEcCccE
Confidence            56788999999999986 578999999999999999999999998 78888776433   37899999999999999999


Q ss_pred             EeeecCCCCCceeEEEEe
Q psy10357        234 CLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       234 ~~~~~~~~~~lgrfilrd  251 (252)
                      |++.+      +||+|||
T Consensus       363 ~~~~~------~rfilr~  374 (482)
T 1wb1_A          363 LAEVG------DRVLITR  374 (482)
T ss_dssp             CCCSS------CCCBEEC
T ss_pred             EecCC------CeEEEEE
Confidence            99865      6999998

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=100.00  E-value=5.5e-33  Score=273.70  Aligned_cols=221  Identities=22%  Similarity=0.326  Sum_probs=193.0

Q ss_pred             hHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc-CchHHhhcc-CCCCCCCCCCCeeEEEeeEEc
Q psy10357          4 SVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG-GAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK   81 (252)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~   81 (252)
                      .++.++..+++++++ .++++|++|+||++|+|-       .++||.| ..|++.|.. ++.|.+..+.||+|+|+++|+
T Consensus       433 ~i~eEi~elLk~~G~-~~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~  504 (1289)
T 3avx_A          433 LVEMEVRELLSQYDF-PGDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFS  504 (1289)
T ss_dssp             HHHHHHHHHHHHTTS-CTTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEE
T ss_pred             HHHHHHHHHHHhccc-cccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeeecccccc
Confidence            356678888888775 456789999999999652       2468876 567777765 788888888999999999996


Q ss_pred             --CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCCc
Q psy10357         82 --DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPA  157 (252)
Q Consensus        82 --g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~  157 (252)
                        |.|++++|+|.+|+|++||.|.++|.+  +.++|++|+++++++++|.|||+|++.|+|++..++++||+|++++. +
T Consensus       505 i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~-~  583 (1289)
T 3avx_A          505 ISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT-I  583 (1289)
T ss_dssp             ETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS-C
T ss_pred             ccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCC-C
Confidence              899999999999999999999999998  78999999999999999999999999999999999999999999886 5


Q ss_pred             ceecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357        158 RTARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV  232 (252)
Q Consensus       158 ~~~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~  232 (252)
                      .++..|+|++.|++++     .++.+|+.+.+|+++.+++|+|. +.   +         .+++|++||.+.|+|++.+|
T Consensus       584 ~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~---~---------~~~~L~~Gd~a~V~L~l~~P  650 (1289)
T 3avx_A          584 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP---E---------GVEMVMPGDNIKMVVTLIHP  650 (1289)
T ss_dssp             CEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC---T---------TCCCBCTTCCCEEEEEEEEE
T ss_pred             ccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC---C---------CcccccCCCEEEEEEEECce
Confidence            7789999999999853     57999999999999999999986 31   1         24789999999999999999


Q ss_pred             EEeeecCCCCCceeEEEEeC
Q psy10357        233 ICLDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       233 i~~~~~~~~~~lgrfilrd~  252 (252)
                      +|++.+      +||+|||.
T Consensus       651 i~ve~g------~RFiLRd~  664 (1289)
T 3avx_A          651 IAMDDG------LRFAIREG  664 (1289)
T ss_dssp             EECCTT------CEEEEEET
T ss_pred             EEEccC------CEEEEEeC
Confidence            999986      59999983

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.98  E-value=1.8e-31  Score=242.28  Aligned_cols=202  Identities=17%  Similarity=0.190  Sum_probs=170.0

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      ...++..+++...   ..+++++|+||++|+|+.+              |++.|.. ++.|.++.+.||+|+|+++|+  
T Consensus       156 ~~~~i~~~l~~~~---~~~~~~i~vSA~~g~gi~~--------------L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~  218 (408)
T 1s0u_A          156 NYEQIKEFVKGTI---AENAPIIPISAHHEANIDV--------------LLKAIQDFIPTPKRDPDATPRMYVARSFDIN  218 (408)
T ss_dssp             HHHHHHHHHTTST---TTTCCEEEC------CHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred             HHHHHHHHHhhcC---CCCCeEEEeeCCCCCCHHH--------------HHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence            4566777776554   2567999999999999965              6777765 888888889999999999984  


Q ss_pred             C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357         82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G  138 (252)
Q Consensus        82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~  138 (252)
                      +        .|++++|+|.+|.|++||.|.++|+++            .++|++|+++++++++|.|||+|++.++   +
T Consensus       219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~  298 (408)
T 1s0u_A          219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY  298 (408)
T ss_dssp             CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGG
T ss_pred             CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcc
Confidence            2        688999999999999999999999742            6899999999999999999999999987   6


Q ss_pred             eCCCCccceeEEeCCCCCcceecEEEEEEEEeccC---------CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357        139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK  209 (252)
Q Consensus       139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~  209 (252)
                      ++..++.+|++||+++.++..++.|+|++.|+++.         .++.+|+++.+|+|+.++.|+|..+..         
T Consensus       299 ~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~---------  369 (408)
T 1s0u_A          299 LTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG---------  369 (408)
T ss_dssp             GTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET---------
T ss_pred             cchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC---------
Confidence            77789999999999998888889999999999884         789999999999999999999987521         


Q ss_pred             cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357        210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd  251 (252)
                                 +  .++|++++|+|++.++      ||+||+
T Consensus       370 -----------~--~~~~~~~~p~~~~~~~------~~~~~~  392 (408)
T 1s0u_A          370 -----------D--IADIKLKLPICAEIGD------RVAISR  392 (408)
T ss_dssp             -----------T--EEEEEEEEEEECCTTC------EEEEEE
T ss_pred             -----------C--EEEEEECCcEEecCCC------EEEEEE
Confidence                       2  6788889999999987      999987

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.97  E-value=1.7e-30  Score=235.84  Aligned_cols=202  Identities=18%  Similarity=0.220  Sum_probs=174.5

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      ...++..+++...   ..+++++|+||++|+|+.+              |++.|.. ++.|.++.+.||+|+|+++|+  
T Consensus       158 ~~~~i~~~l~~~~---~~~~~~i~vSA~~g~gi~~--------------L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~  220 (410)
T 1kk1_A          158 NYRQIKEFIEGTV---AENAPIIPISALHGANIDV--------------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN  220 (410)
T ss_dssp             HHHHHHHHHTTST---TTTCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred             HHHHHHHHHHhcC---cCCCeEEEeeCCCCCCHHH--------------HHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence            4456666666543   2567999999999999965              6777765 888888889999999999984  


Q ss_pred             C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357         82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G  138 (252)
Q Consensus        82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~  138 (252)
                      +        .|++++|+|.+|.|++||.|.++|+++            ..+|++|+.+++++++|.|||+|++.++   +
T Consensus       221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~  300 (410)
T 1kk1_A          221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPY  300 (410)
T ss_dssp             CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGG
T ss_pred             CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcc
Confidence            2        688999999999999999999999753            6899999999999999999999999987   4


Q ss_pred             eCCCCccceeEEeCCCCCcceecEEEEEEEEeccC---------CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357        139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEHK---------SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK  209 (252)
Q Consensus       139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---------~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~  209 (252)
                      ++..|+.+|++||+++.++..++.|+|++.|+++.         .++.+|+++.+|+|+.+++|+|..+..         
T Consensus       301 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~---------  371 (410)
T 1kk1_A          301 LTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK---------  371 (410)
T ss_dssp             GTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET---------
T ss_pred             cchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC---------
Confidence            66688999999999998888889999999999884         789999999999999999999987521         


Q ss_pred             cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEEEe
Q psy10357        210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTLRD  251 (252)
Q Consensus       210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfilrd  251 (252)
                                 +  .++|++++|+|++.++      ||+||+
T Consensus       372 -----------~--~~~l~~~~p~~~~~~~------~~~~~~  394 (410)
T 1kk1_A          372 -----------D--EIEVKLQIPVCAEPGD------RVAISR  394 (410)
T ss_dssp             -----------T--EEEEEEEEEEECCTTC------EEEEEE
T ss_pred             -----------C--EEEEEeCCcEEecCCC------EEEEEE
Confidence                       2  6788889999999987      999987

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.97  E-value=1.7e-30  Score=235.46  Aligned_cols=201  Identities=17%  Similarity=0.194  Sum_probs=172.7

Q ss_pred             HHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCCCCCCCCCeeEEEeeEEc--
Q psy10357          5 VKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSLNRKMDGPFLMPVVEKFK--   81 (252)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~I~~~~~--   81 (252)
                      .+.++..+++..+.   ++++++|+||++|+|+.+              |++.|.. ++.|.++.+.||+|+|+++|.  
T Consensus       150 ~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~  212 (403)
T 3sjy_A          150 QYRQIKQFTKGTWA---ENVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVN  212 (403)
T ss_dssp             HHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred             HHHHHHHHHHhhCC---CCCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCCcEEEEEEEEeec
Confidence            44566666665553   678999999999999975              6777765 888888889999999999985  


Q ss_pred             C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccceeecCCCeEEEEEe---e
Q psy10357         82 D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEVSSVGPGENIKVKLK---G  138 (252)
Q Consensus        82 g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~  138 (252)
                      +        .|++++|+|.+|.+++||+|.++|+++            ..+|++|+++++++++|.|||+|+++|+   +
T Consensus       213 ~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~  292 (403)
T 3sjy_A          213 KPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPS  292 (403)
T ss_dssp             CTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHH
T ss_pred             CCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccc
Confidence            3        699999999999999999999999875            5899999999999999999999999987   6


Q ss_pred             eCCCCccceeEEeCCCCCcceecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcc
Q psy10357        139 IEEDDVSPGFVLCDPNNPARTARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEK  209 (252)
Q Consensus       139 ~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~  209 (252)
                      ++..|+.+|++||+++.++..++.|+|++.||++         +.++.+|+++.+|+|+.++.|+|..+.    .     
T Consensus       293 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~----~-----  363 (403)
T 3sjy_A          293 LTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK----K-----  363 (403)
T ss_dssp             HHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEEC----S-----
T ss_pred             cchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEec----C-----
Confidence            6778999999999999988889999999999986         578999999999999999999998651    1     


Q ss_pred             cccCCceecCCCEEEEEEEeCceEEeeecCCCCCceeEEE
Q psy10357        210 SKTRPRFVKQDQIAIMRLEAAGVICLDQFKLFPQMGRFTL  249 (252)
Q Consensus       210 ~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~lgrfil  249 (252)
                                 +  .+++.|++|+|++..+     -||+|
T Consensus       364 -----------~--~~~~~l~~p~~~~~g~-----~r~~i  385 (403)
T 3sjy_A          364 -----------D--EIEVELRRPVAVWSNN-----IRTVI  385 (403)
T ss_dssp             -----------S--EEEEEEEEEEECCSSS-----CEEEE
T ss_pred             -----------c--eEEEEeCCcEeeccCC-----EEEEE
Confidence                       1  5788889999988652     26776

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.41  E-value=6.3e-13  Score=125.29  Aligned_cols=118  Identities=18%  Similarity=0.313  Sum_probs=100.1

Q ss_pred             EEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEE
Q psy10357         25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSL  102 (252)
Q Consensus        25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v  102 (252)
                      +++++||++|.|+.++             |...++.+|.|..+.+.||++.|.+++.  +.|+++.|+|.+|++++||.|
T Consensus       159 ~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I  225 (600)
T 2ywe_A          159 EAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKI  225 (600)
T ss_dssp             GCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEE
T ss_pred             cEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEE
Confidence            5899999999999764             4445677998888888999999988864  679999999999999999999


Q ss_pred             EEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCC
Q psy10357        103 VLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       103 ~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~  156 (252)
                      .++|.+...+|++|..+.   .++++|.|||.+.+ +.|+ +..++++||+||+++.|
T Consensus       226 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v-~~gi~~~~~~~~GDtl~~~~~~  282 (600)
T 2ywe_A          226 MLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYI-AASIKDVRDIRIGDTITHAKNP  282 (600)
T ss_dssp             EETTTTEEEECCEEEEESSSEEEESCEETTCEEEE-ESSCCCTTSSCTTCEEEESSSC
T ss_pred             EeccccceEeeecccccCCCceECCEEecCceeee-eccccchhhccCCCEEEeCCCc
Confidence            999999999999998754   57889999996555 3555 45789999999998765

>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1

Probab=99.36  E-value=7e-12  Score=92.28  Aligned_cols=80  Identities=23%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             CCCeeEEEeeEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         69 DGPFLMPVVEKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        69 ~~p~~~~I~~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      ..|..+.|-..+. -.|+++.|+|++|.|++|+.|   |.+ ...+|+||+++++++++|.+||+|+++++|.+. ++++
T Consensus        32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~  107 (116)
T 1xe1_A           32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK  107 (116)
T ss_dssp             SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred             cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence            4577777776443 128899999999999999998   988 899999999999999999999999999998777 9999


Q ss_pred             eeEEeC
Q psy10357        147 GFVLCD  152 (252)
Q Consensus       147 G~vl~~  152 (252)
                      ||+|..
T Consensus       108 GdVLyv  113 (116)
T 1xe1_A          108 GDVLEI  113 (116)
T ss_dssp             TCEEEE
T ss_pred             CcEEEE
Confidence            999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.32  E-value=4.4e-12  Score=119.62  Aligned_cols=118  Identities=17%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             EEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEE
Q psy10357         25 LIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSL  102 (252)
Q Consensus        25 ~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v  102 (252)
                      +++++||++|.|+.++             |...++.+|.|..+.+.||++.|.+++.  +.|+++.|+|.+|+++.||.+
T Consensus       157 ~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v  223 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV  223 (599)
T ss_dssp             TCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred             eEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence            5899999999999763             3345577888888889999999998864  679999999999999999999


Q ss_pred             EEecCCceEEEEEEEeCC---ccceeecCCCeEEEEEeee-CCCCccceeEEeCCCCC
Q psy10357        103 VLMPNRTPVIVDQLWSDD---EEVSSVGPGENIKVKLKGI-EEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       103 ~i~p~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~  156 (252)
                      .+.|.+...+|.+|..++   .+++++.|||.+.+ +.++ +..++.+||+||++++|
T Consensus       224 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~~  280 (599)
T 3cb4_D          224 KVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARNP  280 (599)
T ss_dssp             EETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSSC
T ss_pred             EeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCCc
Confidence            999999999999998753   57889999995544 5555 35689999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.25  E-value=4.4e-12  Score=118.12  Aligned_cols=119  Identities=20%  Similarity=0.288  Sum_probs=92.7

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecC
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKG   99 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~g   99 (252)
                      .+++++|+||++|+|+.++.     .     .|...++ ...+..+.+.|++++|+++|.  |.|++++|+|.+|.+++|
T Consensus       140 ~~~~iv~vSAktG~GI~eLl-----e-----~I~~l~~-~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~G  208 (537)
T 3izy_P          140 GDVQAVHVSALTGENMMALA-----E-----ATIALAE-MLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKG  208 (537)
T ss_dssp             SSEEECCCCSSSSCSSHHHH-----H-----HHHHHHT-TCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSE
T ss_pred             CCceEEEEECCCCCCchhHH-----H-----HHHHhhh-cccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcC
Confidence            45799999999999997641     0     0222222 234455567899999999985  789999999999999999


Q ss_pred             CEEEEecCCceEEEEEEEeCC-ccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357        100 QSLVLMPNRTPVIVDQLWSDD-EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       100 d~v~i~p~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      |.+.  +.....+|++|+.++ .++++|.||++|++  .|++ ....+||+++..+++
T Consensus       209 d~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~  261 (537)
T 3izy_P          209 SILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE  261 (537)
T ss_dssp             EEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred             CEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence            9874  455678999999986 79999999999987  3544 235899999998653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.22  E-value=2e-11  Score=113.80  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhh-ccCCCCCCC---------CCCCeeEEEeeEEc-----CCC
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFI-DALPSLNRK---------MDGPFLMPVVEKFK-----DMG   84 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l-~~i~~~~~~---------~~~p~~~~I~~~~~-----g~G   84 (252)
                      ....+|+++.||++|.|+..              |++.| +.+|+|...         .+.||.+.|..+..     ..|
T Consensus       248 ~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G  313 (529)
T 2h5e_A          248 AGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRD  313 (529)
T ss_dssp             TTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSC
T ss_pred             hCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCc
Confidence            45678999999999999965              55654 557766421         14688888876632     469


Q ss_pred             eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      ++..|||.+|+++.||.|.+.+.++..+|.+|+.+    .+++++|.|||++++  .  ...++..||+||+.+
T Consensus       314 ~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~--~l~~~~~Gdtl~~~~  383 (529)
T 2h5e_A          314 RVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--H--NHGTIQIGDTFTQGE  383 (529)
T ss_dssp             CCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--C--CSSCCCTTCEEESSC
T ss_pred             eEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--e--ccCCCccCCEeecCC
Confidence            99999999999999999999999999999999975    578999999999977  3  345788899999876

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.20  E-value=5.7e-11  Score=110.68  Aligned_cols=117  Identities=15%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCCC---------CCCCeeEEEeeEEc-----CCC
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNRK---------MDGPFLMPVVEKFK-----DMG   84 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~~---------~~~p~~~~I~~~~~-----g~G   84 (252)
                      ....+|++++||++|.|+.+              |++ +++.+|.|...         .+.||...|..+..     +.|
T Consensus       247 ~~~~~PV~~gSA~~~~GV~~--------------Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g  312 (528)
T 3tr5_A          247 KGELTPIFFGSAINNFGVGE--------------LLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRD  312 (528)
T ss_dssp             TTSEEEEEECBGGGTBSHHH--------------HHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred             cCceeEEEeccccCCccHHH--------------HHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCc
Confidence            46778999999999999976              455 44567776431         25789999988752     569


Q ss_pred             eEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         85 TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        85 ~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      ++..+||.+|+++.||.|...+.++..+|.++...    .+++++|.|||++++  .  +..++..||+||+.+
T Consensus       313 ~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~--~l~~~~~GDtl~~~~  382 (528)
T 3tr5_A          313 RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--H--NHGTIQIGDTFTQGE  382 (528)
T ss_dssp             EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--E--ESSSCCTTCEEESSC
T ss_pred             eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--c--CCCCCccCCEEcCCC
Confidence            99999999999999999999999999999999874    568999999999876  4  335788999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.18  E-value=1.3e-10  Score=111.80  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=96.7

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC--------------------CCCCCeeEEEeeEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR--------------------KMDGPFLMPVVEKF   80 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~--------------------~~~~p~~~~I~~~~   80 (252)
                      .+-+|+++.||++|.|+..+             |..+++.+|+|..                    +.+.||.+.|..++
T Consensus       259 ~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~  325 (704)
T 2rdo_7          259 NEIILVTCGSAFKNKGVQAM-------------LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA  325 (704)
T ss_pred             CCeeEEEEeecccCccHHHH-------------HHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence            35579999999999998653             3335566877633                    24679999999997


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      .  +.|++..|||.+|+|+.||.|+..+.++..+|.+|...    .+++++|.|||++++.  |+  .++..||+||+.+
T Consensus       326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl--~~~~~GdTl~~~~  401 (704)
T 2rdo_7          326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI--GL--KDVTTGDTLCDPD  401 (704)
T ss_pred             EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe--Cc--ccCccCCEEeCCC
Confidence            4  67999999999999999999999999999999999764    4689999999999874  44  4678999999876


Q ss_pred             C
Q psy10357        155 N  155 (252)
Q Consensus       155 ~  155 (252)
                      .
T Consensus       402 ~  402 (704)
T 2rdo_7          402 A  402 (704)
T ss_pred             c
Confidence            4

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.16  E-value=1.5e-11  Score=117.70  Aligned_cols=115  Identities=25%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHHh-hccCCCCCCC-CCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPF-IDALPSLNRK-MDGPFLMPVVEKFK--DMGTVVMGKVESGEAK   97 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~-l~~i~~~~~~-~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~   97 (252)
                      +-+|++++||++|.|+..              |++. ++.+|.|... .+.||.+.|..++.  +.|++..|||.+|+|+
T Consensus       246 ~~~pv~~~SA~~~~Gv~~--------------Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~  311 (665)
T 2dy1_A          246 LLYPVALASGEREIGVLP--------------LLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLK  311 (665)
T ss_dssp             SCEEEEECBTTTTBSHHH--------------HHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEEC
T ss_pred             CeeEEEEeecccCcCHHH--------------HHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEe
Confidence            447999999999999876              4554 4668877543 67899999999974  6799999999999999


Q ss_pred             cCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         98 KGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        98 ~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      .||.|...+  +..+|.+|...    ..++++|.|||++++.  ++  .++.+||+||+.+.+
T Consensus       312 ~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl--~~~~~Gdtl~~~~~~  368 (665)
T 2dy1_A          312 PGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KA--EGLHRGMVLWQGEKP  368 (665)
T ss_dssp             TTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES--SC--TTCCTTCEEESSSCC
T ss_pred             cCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CC--ccCccCCEEecCCCc
Confidence            999999877  77889888763    3589999999999873  44  478899999997654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.12  E-value=2.4e-10  Score=109.71  Aligned_cols=117  Identities=21%  Similarity=0.266  Sum_probs=96.5

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC------------------CCCCCeeEEEeeEEc-
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR------------------KMDGPFLMPVVEKFK-   81 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~------------------~~~~p~~~~I~~~~~-   81 (252)
                      .-+|+++.||++|.|+..              |++ +++.+|.|..                  +.+.||.+.|..++. 
T Consensus       254 ~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d  319 (691)
T 1dar_A          254 KITPVFLGSALKNKGVQL--------------LLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMAD  319 (691)
T ss_dssp             SCEEEEECBGGGTBSHHH--------------HHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEE
T ss_pred             cEeEEEEeecccCcCHHH--------------HHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEc
Confidence            457999999999999865              455 5566887753                  256799999999874 


Q ss_pred             -CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         82 -DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        82 -g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                       +.|++..|||.+|+|+.||.|+..+.++..+|..|...    ..++++|.|||.+++.  |+  .++..||+||+.+.+
T Consensus       320 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~~~  395 (691)
T 1dar_A          320 PYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GL--KETITGDTLVGEDAP  395 (691)
T ss_dssp             TTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CC--SSCCTTCEEEETTCC
T ss_pred             CCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe--Cc--ccCccCCEEecCCCc
Confidence             67999999999999999999999988888899888764    3588999999999874  55  467789999987654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.10  E-value=3.2e-10  Score=104.73  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             eeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc---CCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeee
Q psy10357         23 ILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA---LPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAK   97 (252)
Q Consensus        23 ~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~---i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~   97 (252)
                      +++++|+||++|+|+.+              |++.|..   +..+..+.+.|+++.|.++|.  |.|++++|+|.+|+++
T Consensus       140 ~~~~v~vSAktG~gI~e--------------Lle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk  205 (501)
T 1zo1_I          140 ESQFVHVSAKAGTGIDE--------------LLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLH  205 (501)
T ss_dssp             SCEEEECCTTTCTTCTT--------------HHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCC
T ss_pred             CccEEEEeeeeccCcch--------------hhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEe
Confidence            47999999999999976              4554432   223344567889999999985  7899999999999999


Q ss_pred             cCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357         98 KGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN  155 (252)
Q Consensus        98 ~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~  155 (252)
                      +||.+.+.+  ...+|++|+. ++.++++|.||++|.+.  |++. ....|++++...+
T Consensus       206 ~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~~~~~~  259 (501)
T 1zo1_I          206 KGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEVTVVRD  259 (501)
T ss_dssp             TTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEEEEECS
T ss_pred             cCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEEEecCC
Confidence            999999865  5679999986 46799999999998764  5442 2468999976543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.04  E-value=5.9e-10  Score=107.03  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=96.1

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCC--------------------CCCCCeeEEEeeE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNR--------------------KMDGPFLMPVVEK   79 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~--------------------~~~~p~~~~I~~~   79 (252)
                      ..-+|+++.||++|.|+..              |++ +++.+|.|..                    +.+.||.+.|..+
T Consensus       251 ~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~  316 (693)
T 2xex_A          251 VEFYPVLCGTAFKNKGVQL--------------MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKV  316 (693)
T ss_dssp             TSCEEEEECBTTTTBSHHH--------------HHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEE
T ss_pred             CCeeeEEEeecccCcCHHH--------------HHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEe
Confidence            3457999999999999865              455 5566887743                    2567999999998


Q ss_pred             Ec--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCC
Q psy10357         80 FK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus        80 ~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      +.  ..|++..|||.+|+|+.||+|.....++..+|..|...+    .++++|.|||++++.  |+  .++..||+||+.
T Consensus       317 ~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdTl~~~  392 (693)
T 2xex_A          317 MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GL--KDTGTGDTLCGE  392 (693)
T ss_dssp             EEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SC--SSCCTTCEEEET
T ss_pred             eecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe--Cc--ccCccCCEEecC
Confidence            74  579999999999999999999998888889999997653    588999999999874  54  467889999987


Q ss_pred             CC
Q psy10357        154 NN  155 (252)
Q Consensus       154 ~~  155 (252)
                      +.
T Consensus       393 ~~  394 (693)
T 2xex_A          393 KN  394 (693)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.96  E-value=9.3e-10  Score=103.79  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=88.1

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCC-----CCCCCCCCeeEEEeeEEc--CCCeEEEEEEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPS-----LNRKMDGPFLMPVVEKFK--DMGTVVMGKVE   92 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~-----~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~   92 (252)
                      ...+|++|+||++|+|+.++              ++.|.. ++.     ...+.+.|+++.|.+++.  |.|++++|+|.
T Consensus       189 ~~~vpvv~vSA~tG~GI~eL--------------l~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~  254 (594)
T 1g7s_A          189 ASQVSIIPISAITGEGIPEL--------------LTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIY  254 (594)
T ss_dssp             TTEEEEEECCTTTCTTHHHH--------------HHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCcceEEEEeccCCCCchhH--------------HHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEe
Confidence            35789999999999999764              333322 211     122457899999999974  78999999999


Q ss_pred             EeeeecCCEEEEecCCc--eEEEEEEEeC------------Cccceeec--CCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357         93 SGEAKKGQSLVLMPNRT--PVIVDQLWSD------------DEEVSSVG--PGENIKVKLKGIEEDDVSPGFVLCDPNN  155 (252)
Q Consensus        93 ~G~l~~gd~v~i~p~~~--~~~V~sI~~~------------~~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~  155 (252)
                      +|+|++||.|.+.|.+.  .++|++|...            ..++++|.  +|+.+++  .  ...++..||.|+..++
T Consensus       255 ~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~  329 (594)
T 1g7s_A          255 DGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTD  329 (594)
T ss_dssp             ESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSS
T ss_pred             eCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCC
Confidence            99999999999999886  4599999753            34677887  6666543  3  3346788999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.88  E-value=7.8e-09  Score=96.70  Aligned_cols=120  Identities=15%  Similarity=0.130  Sum_probs=94.5

Q ss_pred             cCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC---------CCCCCeeEEEeeEEc-----CCCe
Q psy10357         20 RQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR---------KMDGPFLMPVVEKFK-----DMGT   85 (252)
Q Consensus        20 ~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~---------~~~~p~~~~I~~~~~-----g~G~   85 (252)
                      ..+-+|++..||++|.|+..+             |...++.+|.|..         +.+.||...|..++.     ..|+
T Consensus       265 ~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Gr  331 (548)
T 3vqt_A          265 KGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDR  331 (548)
T ss_dssp             TTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------C
T ss_pred             hCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCe
Confidence            356789999999999999763             3345677888742         246789888877653     3689


Q ss_pred             EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357         86 VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus        86 vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +..+||.+|+|+.||.|+....++..+|..+....    .++++|.|||++++  .  ...++..||+||+.+.+
T Consensus       332 la~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~--gl~~~~~GDTl~~~~~~  402 (548)
T 3vqt_A          332 MAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--P--NHGTIKIGDTFTESKEV  402 (548)
T ss_dssp             EEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--E--CSSCCCTTCEEESSSSC
T ss_pred             EEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--c--CCccCccCCEecCCCCc
Confidence            99999999999999999999989999998887753    58999999999976  4  44578899999998653

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.65  E-value=2.1e-08  Score=96.52  Aligned_cols=119  Identities=24%  Similarity=0.307  Sum_probs=95.1

Q ss_pred             CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCC--------------------CCCCCCeeEEEeeEE
Q psy10357         21 QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLN--------------------RKMDGPFLMPVVEKF   80 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~--------------------~~~~~p~~~~I~~~~   80 (252)
                      .+-+|.+..||+++.|+..+             |...++.+|.|.                    .+.+.||.+.|..++
T Consensus       262 ~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~  328 (709)
T 4fn5_A          262 CEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIA  328 (709)
T ss_dssp             TSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECC
T ss_pred             ceeeeeeeeecccCCchHHH-------------HHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEee
Confidence            45679999999999998653             334567788773                    345689999998886


Q ss_pred             c--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCC
Q psy10357         81 K--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN  154 (252)
Q Consensus        81 ~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~  154 (252)
                      .  ..|.+..|||.+|+|+.||+|+....++..+|..+...    ..++++|.|||.+++  .|+  .++..|++||+.+
T Consensus       329 ~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~Gl--~~~~~gdTl~~~~  404 (709)
T 4fn5_A          329 TDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAAL--IGM--KDVTTGDTLCSIE  404 (709)
T ss_dssp             CBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEE--CSC--SSCCTTCEEECSS
T ss_pred             cccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeee--cCC--CcCccCCEecCCC
Confidence            4  56899999999999999999998877777788887664    368999999999976  555  4788999999876


Q ss_pred             CC
Q psy10357        155 NP  156 (252)
Q Consensus       155 ~~  156 (252)
                      .+
T Consensus       405 ~~  406 (709)
T 4fn5_A          405 KP  406 (709)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.10  E-value=5.7e-08  Score=92.45  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             ceeEEEecccccCCcccCCCCCCcCCCCccCchHH-hhccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeec
Q psy10357         22 EILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIP-FIDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKK   98 (252)
Q Consensus        22 ~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~   98 (252)
                      .-+|++..||++|.|+..              |++ +++.+|.|....+.||.+.|..++.  ..|++..+||.+|+++.
T Consensus       211 ~~~Pv~~gSa~~~~Gv~~--------------LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~  276 (638)
T 3j25_A          211 SLFPLYHGSAKSNIGIDN--------------LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHL  276 (638)
T ss_dssp             SCCCCCCCCSTTCCSHHH--------------HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCS
T ss_pred             ccccccccccccCCCchh--------------HhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccC
Confidence            446899999999999965              455 4577898887788999999998864  57899999999999999


Q ss_pred             CCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEeeeCCCCccceeEEeCCCC
Q psy10357         99 GQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN  155 (252)
Q Consensus        99 gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~  155 (252)
                      ||.|.+...+ ..+|..+...    ..++++|.|||.+++  .+   .++..|+++++...
T Consensus       277 g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~  331 (638)
T 3j25_A          277 RDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL  331 (638)
T ss_dssp             CCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred             CCccccccCc-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence            9999876544 3455555443    357899999999875  32   46778999888754

>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1

Probab=97.82  E-value=3.2e-05  Score=55.18  Aligned_cols=78  Identities=22%  Similarity=0.301  Sum_probs=67.7

Q ss_pred             eEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         73 LMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        73 ~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      ++-|-++|+  ..|++...+|.+|.++.+..+.++-.+.   ..++.|+..+.++++++.+|.-++|.+.  +..|++.|
T Consensus         8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~--~~~dik~G   85 (99)
T 1d1n_A            8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIK--NFNDIKEG   85 (99)
T ss_dssp             EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECT--TCSSCSSC
T ss_pred             EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEc--CcCCCCCC
Confidence            456777886  4689999999999999999999999985   4589999999999999999999999998  55699999


Q ss_pred             eEEeC
Q psy10357        148 FVLCD  152 (252)
Q Consensus       148 ~vl~~  152 (252)
                      |+|=.
T Consensus        86 D~Ie~   90 (99)
T 1d1n_A           86 DVIEA   90 (99)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99843

>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.74  E-value=0.00012  Score=53.99  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             eEEEeeEEc--CCCe---EEEEEEEEeeeecCCEEEEecCCce---EEEEEEEeCCccceeecCCCeEEEEEeeeCCC-C
Q psy10357         73 LMPVVEKFK--DMGT---VVMGKVESGEAKKGQSLVLMPNRTP---VIVDQLWSDDEEVSSVGPGENIKVKLKGIEED-D  143 (252)
Q Consensus        73 ~~~I~~~~~--g~G~---vv~G~v~~G~l~~gd~v~i~p~~~~---~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~-~  143 (252)
                      ++-|-++|+  ..|+   +.-++|..|.++.+..+.++-.+..   .++.|+..+.++++++.+|.-++|.|.  +.. |
T Consensus        12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~--~fniD   89 (120)
T 2crv_A           12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLD--EEKVE   89 (120)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECS--CTTSC
T ss_pred             EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEc--cCCCC
Confidence            567788886  4576   8888999999999999999998854   489999999999999999999999998  556 9


Q ss_pred             ccceeEEeCC
Q psy10357        144 VSPGFVLCDP  153 (252)
Q Consensus       144 i~~G~vl~~~  153 (252)
                      ++.||+|=.-
T Consensus        90 ik~GDiIE~y   99 (120)
T 2crv_A           90 FKPGDQVICY   99 (120)
T ss_dssp             CCTTEEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999998544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.71  E-value=0.00015  Score=70.99  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             CCCCCeeEEEeeEEc--CCCe-EEEEEEEEeeeecCCEEEEecCC------c---eEEEEEEEeC----CccceeecCCC
Q psy10357         67 KMDGPFLMPVVEKFK--DMGT-VVMGKVESGEAKKGQSLVLMPNR------T---PVIVDQLWSD----DEEVSSVGPGE  130 (252)
Q Consensus        67 ~~~~p~~~~I~~~~~--g~G~-vv~G~v~~G~l~~gd~v~i~p~~------~---~~~V~sI~~~----~~~v~~a~aG~  130 (252)
                      +.+.||.+.|..++.  ..|. +..+||.+|+|+.||.|.++..+      +   ..+|..|...    ..++++|.|||
T Consensus       373 ~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGd  452 (842)
T 1n0u_A          373 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGN  452 (842)
T ss_dssp             CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTC
T ss_pred             CCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCC
Confidence            456899999998864  5786 89999999999999999876332      2   5788888765    35899999999


Q ss_pred             eEEEEEeeeCCCCccceeEEeCCCC
Q psy10357        131 NIKVKLKGIEEDDVSPGFVLCDPNN  155 (252)
Q Consensus       131 ~v~l~l~~~~~~~i~~G~vl~~~~~  155 (252)
                      ++++  .|++...+..| +||+.+.
T Consensus       453 I~ai--~gl~~~~~~t~-Tl~~~~~  474 (842)
T 1n0u_A          453 IIGL--VGIDQFLLKTG-TLTTSET  474 (842)
T ss_dssp             EEEE--ESCTTTCCSSE-EEESCTT
T ss_pred             EEEE--Eccccceecce-eecCCCC
Confidence            9876  55543333445 9998654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.55  E-value=0.00034  Score=64.53  Aligned_cols=94  Identities=20%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             hccCCCCCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeE
Q psy10357         58 IDALPSLNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENI  132 (252)
Q Consensus        58 l~~i~~~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v  132 (252)
                      +...-.|.....---.+-|-.+|+  ..|.++.++|..|.++.|..+.+...+.   ..+|.||+.+.++++++..|+-|
T Consensus       395 ~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ec  474 (501)
T 1zo1_I          395 MSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC  474 (501)
T ss_dssp             HTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCE
T ss_pred             HHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEE
Confidence            443333333333334566778886  4599999999999999999999988774   67999999999999999999999


Q ss_pred             EEEEeeeCCCCccceeEEeCC
Q psy10357        133 KVKLKGIEEDDVSPGFVLCDP  153 (252)
Q Consensus       133 ~l~l~~~~~~~i~~G~vl~~~  153 (252)
                      ++.+.+  ..|++.||+|-.-
T Consensus       475 gi~~~~--~~~~~~gd~~~~~  493 (501)
T 1zo1_I          475 GIGVKN--YNDVRTGDVIEVF  493 (501)
T ss_dssp             EEEBCC--CTTCCTTCEEEEC
T ss_pred             EEEEcC--cCCCCCCCEEEEE
Confidence            999984  4599999998654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.07  E-value=0.0039  Score=58.62  Aligned_cols=82  Identities=17%  Similarity=0.241  Sum_probs=67.6

Q ss_pred             CeeEEEe--eEEc-CCCeEEEEEEEEeeeecCCEEEEecCC-ceEEEEEEEeCCccceeecCCCeEEEEEeeeC-CCCcc
Q psy10357         71 PFLMPVV--EKFK-DMGTVVMGKVESGEAKKGQSLVLMPNR-TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIE-EDDVS  145 (252)
Q Consensus        71 p~~~~I~--~~~~-g~G~vv~G~v~~G~l~~gd~v~i~p~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~  145 (252)
                      |-.+-|-  .+|+ ..|.++.++|..|.++.|..+.+ +.+ ...+|.||+.+.+++++|.+|+-|++.+.+.. ..+++
T Consensus       463 ~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~  541 (594)
T 1g7s_A          463 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIH  541 (594)
T ss_dssp             CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBC
T ss_pred             eEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCCC
Confidence            4455554  6886 55888888999999999999998 555 56799999999999999999999999998532 26899


Q ss_pred             ceeEEeCC
Q psy10357        146 PGFVLCDP  153 (252)
Q Consensus       146 ~G~vl~~~  153 (252)
                      .||+|-..
T Consensus       542 ~~d~~~~~  549 (594)
T 1g7s_A          542 EGDTLYVD  549 (594)
T ss_dssp             TTCEEEEC
T ss_pred             CCCEEEEE
Confidence            99998654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=96.96  E-value=0.0025  Score=59.15  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=74.6

Q ss_pred             hhccCCCCCCCCCCCeeEEEeeEEc---C--CCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecC
Q psy10357         57 FIDALPSLNRKMDGPFLMPVVEKFK---D--MGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGP  128 (252)
Q Consensus        57 ~l~~i~~~~~~~~~p~~~~I~~~~~---g--~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~a  128 (252)
                      ++...-.|.....-.-++-|-.+|+   |  .|++..++|..|.++.|..+.++..+.   ..++.|+..+.++++++..
T Consensus       433 ~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~  512 (537)
T 3izy_P          433 ELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKT  512 (537)
T ss_dssp             HHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEET
T ss_pred             HHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcC
Confidence            4444334443334446788888885   3  578999999999999999999999885   4588888889999999999


Q ss_pred             CCeEEEEEeeeCCCCccceeEEe
Q psy10357        129 GENIKVKLKGIEEDDVSPGFVLC  151 (252)
Q Consensus       129 G~~v~l~l~~~~~~~i~~G~vl~  151 (252)
                      |.-|++.+.+ ...|++.||+|-
T Consensus       513 g~ecgi~~~~-~~~~~~~gd~ie  534 (537)
T 3izy_P          513 GMDCGLSLDE-EKIEFKVGDAII  534 (537)
T ss_dssp             TCEEEEESSS-SCSSCSCCCEEE
T ss_pred             CCEEEEEEcC-cccCCCCCCEEE
Confidence            9999999985 145999999873

>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A

Probab=91.95  E-value=0.15  Score=35.30  Aligned_cols=55  Identities=18%  Similarity=0.423  Sum_probs=41.0

Q ss_pred             EEeeeecCCEEEE-ecCC--ceEEEEEEEe-CCccceee-cCCCeEEEEEeeeCCCCccceeEE
Q psy10357         92 ESGEAKKGQSLVL-MPNR--TPVIVDQLWS-DDEEVSSV-GPGENIKVKLKGIEEDDVSPGFVL  150 (252)
Q Consensus        92 ~~G~l~~gd~v~i-~p~~--~~~~V~sI~~-~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl  150 (252)
                      ....+.+||.|.+ .|.+  ...+|..|.. .+++++.| ++|+.|.|.+.    ..+..|++|
T Consensus        26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil   85 (89)
T 4he6_A           26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM   85 (89)
T ss_dssp             ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred             EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence            3678999999985 4665  4567778874 56789998 99999988654    356667765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1f60a2	107	b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,	7e-29
d1r5ba1	95	b.43.3.1 (A:460-554) Eukaryotic peptide chain rele	4e-27
d1jnya2	107	b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,	6e-24
d1wb1a1	92	b.43.3.1 (A:180-271) Elongation factor SelB, domai	8e-22
d1r5ba2	68	b.44.1.1 (A:555-622) Eukaryotic peptide chain rele	2e-21
d2c78a1	100	b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu),	8e-21
d1f60a1	94	b.43.3.1 (A:241-334) Elongation factor eEF-1alpha,	1e-20
d1d2ea1	98	b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu),	2e-20
d1efca1	92	b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu),	2e-20
d1jnya1	95	b.43.3.1 (A:228-322) Elongation factor eEF-1alpha,	2e-20
d1zunb1	92	b.43.3.1 (B:238-329) Sulfate adenylate transferase	9e-15
d1zunb2	105	b.44.1.1 (B:330-434) Sulfate adenylate transferase	1e-13
d1xe1a_	91	b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococ	4e-11
d1kk1a1	121	b.43.3.1 (A:201-321) Initiation factor eIF2 gamma	3e-09
d1s0ua1	118	b.43.3.1 (A:230-347) Initiation factor eIF2 gamma	5e-08
d1g7sa2	128	b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b,	3e-06
d2qn6a1	114	b.43.3.1 (A:207-320) Initiation factor eIF2 gamma	2e-05
d2dy1a1	103	b.43.3.1 (A:275-377) Elongation factor G (EF-G), d	8e-04

>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 7e-29
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F+A +++L H   I AGYS V+  H          L+   D+++G+K +  P+F+K    
Sbjct: 4   FNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDA 63

Query: 223 AIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           A+++   +  +C++ F  +P +GRF +RD 
Sbjct: 64  ALVKFVPSKPMCVEAFSEYPPLGRFAVRDM 93

>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 95

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Eukaryotic peptide chain release factor ERF2, post-G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 98.3 bits (245), Expect = 4e-27
 Identities = 35/94 (37%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 64  LNRKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD-DEE 122
           L RK++ PF+MP+  K+KD+GT++ GK+E+G  KK  ++++MP    + V  ++ + DEE
Sbjct: 2   LERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE 61

Query: 123 VSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
           +SS   G+ ++++++G +  DV  G+VL    NP
Sbjct: 62  ISSSICGDQVRLRVRGDDS-DVQTGYVLTSTKNP 94

>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 107

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 90.4 bits (224), Expect = 6e-24
 Identities = 29/93 (31%), Positives = 59/93 (63%)

Query: 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ 219
           A  F A+I+++ H + +  GY+ V+H+H  +    V  L+  +D +TG++++  P+F+KQ
Sbjct: 1   ADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQ 60

Query: 220 DQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
             +AI++ +    +C++++  FP +GRF +RD 
Sbjct: 61  GDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM 93

>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Length = 92

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 84.6 bits (209), Expect = 8e-22
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 66  RKMDGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEV 123
           R  +  F MP+      K  GTVV G +  G  K G  L ++P      V  +    E V
Sbjct: 1   RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESV 60

Query: 124 SSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154
                G+ + + ++G++   +  G +L   +
Sbjct: 61  MEAKAGDRVGMAIQGVDAKQIYRGCILTSKD 91

>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 68

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Eukaryotic peptide chain release factor ERF2, C-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 82.9 bits (205), Expect = 2e-21
 Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 163 FDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQI 222
           F AQI ILE  SI+  GYS VMHIH   EEV+   L+  +D KT  KSK  P F  +   
Sbjct: 6   FIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMK 64

Query: 223 AI 224
            I
Sbjct: 65  II 66

>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Thermus thermophilus [TaxId: 274]

 Score = 82.2 bits (203), Expect = 8e-21
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 66  RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVL---MPNRTPVIVDQLWSDD 120
           R +D PFLMPV + F     GTV  G++E G+ K G  + +    P     +V  +    
Sbjct: 3   RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 62

Query: 121 EEVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPNN 155
           + +     G+N+ V L+G+  ++V  G VL  P +
Sbjct: 63  KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGS 97

>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor eEF-1alpha, domain 2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (201), Expect = 1e-20
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 69  DGPFLMPVVEKFKDM--GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSV 126
           D P  +P+ + +K    GTV +G+VE+G  K G  +   P      V  +    E++   
Sbjct: 1   DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG 60

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
            PG+N+   +K +   ++  G V  D  N 
Sbjct: 61  VPGDNVGFNVKNVSVKEIRRGNVCGDAKND 90

>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 98

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 81.1 bits (200), Expect = 2e-20
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 66  RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVI--VDQLWSDDE 121
           R ++ PFL+PV   +     GTVV G +E G  KKG     + +   +   V  +    +
Sbjct: 2   RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61

Query: 122 EVSSVGPGENIKVKLKGIEEDDVSPGFVLCDPN 154
            +     G+N+   ++G++ +D+  G V+  P 
Sbjct: 62  SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 94

>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} Length = 92

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 81.0 bits (200), Expect = 2e-20
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 68  MDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTP--VIVDQLWSDDEEV 123
           +D PFL+P+ + F     GTVV G+VE G  K G+ + ++  +         +    + +
Sbjct: 2   IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 61

Query: 124 SSVGPGENIKVKLKGIEEDDVSPGFVLCDP 153
                GEN+ V L+GI+ +++  G VL  P
Sbjct: 62  DEGRAGENVGVLLRGIKREEIERGQVLAKP 91

>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 95

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor eEF-1alpha, domain 2
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 81.1 bits (200), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 69  DGPFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSV 126
           D P  +P+  V     +GTV +G+VESG  K G  +V MP      V  + +   ++   
Sbjct: 3   DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKA 62

Query: 127 GPGENIKVKLKGIEEDDVSPGFVLCDPNNP 156
            PG+NI   ++G+E+ D+  G V+  PNNP
Sbjct: 63  EPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 92

>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 92

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 71  PFLMPV--VEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGP 128
               PV  V +         G + SG   KG  +V++P+     V  + + + E+   GP
Sbjct: 6   DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGP 65

Query: 129 GENIKVKLKGIEEDDVSPGFVLCDPNNP 156
           G+ + + ++   E D+S G +L   +N 
Sbjct: 66  GQAVTLTMED--EIDISRGDLLVHADNV 91

>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 105

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQ 219
           +  FDA +V +  + ++  G    +         ++ ++   +D  T E+       ++ 
Sbjct: 3   SDAFDAMLVWMAEEPML-PGKKYDIKRATSYVPGSIASITHRVDVNTLEEGP--ASSLQL 59

Query: 220 DQIAIMRLEAAGVICLDQFKLFPQMGRFTLRDE 252
           ++I  +++     I LD +      G F + D 
Sbjct: 60  NEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDR 92

>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} Length = 91

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Hypothetical protein PF0907
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 74  MPVVEKFKDMG-TVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENI 132
           + V E    MG  V++G VESG    G  +          + ++  + E+V     G+ I
Sbjct: 12  VVVEEVVNIMGKDVIIGTVESGMIGVGFKVKGPSGIG--GIVRIERNREKVEFAIAGDRI 69

Query: 133 KVKLKGIEEDDVSPGFVLCDPNN 155
            + ++G +   V  G VL     
Sbjct: 70  GISIEG-KIGKVKKGDVLEIYQT 91

>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 121

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMP--------- 106
           R  + P  M V+  F          K +G V+ G +  G+ K G  + + P         
Sbjct: 3   RDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGR 62

Query: 107 ---NRTPVIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNN 155
                    +  L +  + V    PG  + V  K    + + D+  G V+  P  
Sbjct: 63  IKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117

>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 118

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 25/115 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMP--------- 106
           R  D    M V   F             G V+ G +  G  K G  + + P         
Sbjct: 1   RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60

Query: 107 ---NRTPVIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNN 155
                    +  L + +  +    PG  I V       + + D   G V+  P  
Sbjct: 61  TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 115

>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 128

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 84  GTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEED- 142
             +   +V +G  ++G  L+     T   V+ +    E + S   G+ + + +K      
Sbjct: 20  PAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK 79

Query: 143 DVSPGFVLC 151
            +  G  L 
Sbjct: 80  TIHEGDTLY 88

>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 25/114 (21%)

Query: 66  RKMDGPFLMPVVEKF----------KDMGTVVMGKVESGEAKKGQSLVLMPNRTP----- 110
           R +    +M V+  F          +  G V+ G +  G  K  Q + ++P         
Sbjct: 1   RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60

Query: 111 -------VIVDQLWSDDEEVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPN 154
                    +  +   DEE     PG  + +       + + D   G ++   +
Sbjct: 61  VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 114

>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor G (EF-G), domain II
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 69  DGPFLMPVVEKFKD--MGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD--EEVS 124
           DGP L  V +   D  MG V   ++  G  K G SL     +  +    +       EV 
Sbjct: 7   DGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKDLLEVE 66

Query: 125 SVGPGENIKVKLKGIEEDDVSPGFVLCDPNNPARTA 160
               G    + +   E   +  G VL     P    
Sbjct: 67  EAEAGFV--LGVPKAE--GLHRGMVLWQGEKPESEE 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1f60a1	94	Elongation factor eEF-1alpha, domain 2 {Baker's ye	99.93
d2c78a1	100	Elongation factor Tu (EF-Tu), domain 2 {Thermus th	99.92
d1jnya1	95	Elongation factor eEF-1alpha, domain 2 {Archaeon S	99.92
d1r5ba1	95	Eukaryotic peptide chain release factor ERF2, post	99.91
d1efca1	92	Elongation factor Tu (EF-Tu), domain 2 {Escherichi	99.91
d1f60a2	107	Elongation factor eEF-1alpha, C-terminal domain {B	99.91
d1d2ea1	98	Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t	99.9
d1wb1a1	92	Elongation factor SelB, domains 2 and 4 {Methanoco	99.9
d1jnya2	107	Elongation factor eEF-1alpha, C-terminal domain {A	99.9
d1kk1a1	121	Initiation factor eIF2 gamma subunit, domain II {A	99.87
d1zunb1	92	Sulfate adenylate transferase subunit cysN/C, EF-T	99.87
d1xe1a_	91	Hypothetical protein PF0907 {Pyrococcus furiosus [	99.86
d1zunb2	105	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d1s0ua1	118	Initiation factor eIF2 gamma subunit, domain II {A	99.83
d2qn6a1	114	Initiation factor eIF2 gamma subunit, domain II {S	99.75
d1g7sa2	128	Initiation factor IF2/eIF5b, domains 2 and 4 {Arch	99.52
d1r5ba2	68	Eukaryotic peptide chain release factor ERF2, C-te	99.45
d1d2ea2	103	Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mi	99.19
d2bv3a1	121	Elongation factor G (EF-G), domain II {Thermus the	99.15
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.11
d2c78a2	93	Elongation factor Tu (EF-Tu) {Thermus thermophilus	99.11
d2dy1a1	103	Elongation factor G (EF-G), domain II {Thermus the	98.99
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.95
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.87
d1n0ua1	138	Elongation factor 2 (eEF-2), domain II {Baker's ye	98.84
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.68
d1d1na_	99	Initiation factor IF2/eIF5b, domains 2 and 4 {Baci	97.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.7
d1g7sa1	101	Initiation factor IF2/eIF5b, domains 2 and 4 {Arch	96.26
d1wb1a3	116	Elongation factor SelB, domain 3 {Methanococcus ma	96.09
d2qn6a2	95	Initiation factor eIF2 gamma subunit {Sulfolobus s	93.54
d1s0ua2	90	Initiation factor eIF2 gamma subunit {Archaeon Met	92.96
d1kk1a2	89	Initiation factor eIF2 gamma subunit {Archaeon Pyr	92.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	86.43
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.0

>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor eEF-1alpha, domain 2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-26  Score=165.96  Aligned_cols=90  Identities=27%  Similarity=0.485  Sum_probs=86.1

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      |+||||+|+++|+  |.|++++|+|++|.|++||+|.++|+++.++|+||+++++++++|.|||+|+++|++++.++|+|
T Consensus         1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~~~i~r   80 (94)
T d1f60a1           1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRR   80 (94)
T ss_dssp             TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCT
T ss_pred             CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCCceEEEEEEEEcCcCcCEecCCCeEEEEEeCccHHhcCC
Confidence            5799999999996  89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeCCCCCcc
Q psy10357        147 GFVLCDPNNPAR  158 (252)
Q Consensus       147 G~vl~~~~~~~~  158 (252)
                      |++||+++++++
T Consensus        81 G~vl~~~~~~pp   92 (94)
T d1f60a1          81 GNVCGDAKNDPP   92 (94)
T ss_dssp             TCEEEETTSSCC
T ss_pred             CCEEECCCCCCC
Confidence            999999987543

>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.2e-25  Score=162.84  Aligned_cols=93  Identities=31%  Similarity=0.570  Sum_probs=88.8

Q ss_pred             CCCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEe---cCCceEEEEEEEeCCccceeecCCCeEEEEEee
Q psy10357         64 LNRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLM---PNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKG  138 (252)
Q Consensus        64 ~~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~---p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~  138 (252)
                      |+|+.++||||+|+++|+  |.|++++|+|++|.+++||.+.++   |.++.++|+||+.+++++++|.|||+|+|+|++
T Consensus         1 P~R~~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~~~~~~a~aG~~v~l~l~g   80 (100)
T d2c78a1           1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG   80 (100)
T ss_dssp             CCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESS
T ss_pred             CcCCCCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEEECCccccEEeCCCeEEEEEcC
Confidence            678899999999999997  899999999999999999999998   788999999999999999999999999999999


Q ss_pred             eCCCCccceeEEeCCCCC
Q psy10357        139 IEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       139 ~~~~~i~~G~vl~~~~~~  156 (252)
                      ++..++++|++||++++.
T Consensus        81 i~~~~i~rG~vl~~p~~l   98 (100)
T d2c78a1          81 VSREEVERGQVLAKPGSI   98 (100)
T ss_dssp             CCTTTCCTTCEEESTTSS
T ss_pred             CCHHHccCcCEEECCCCC
Confidence            999999999999998763

>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor eEF-1alpha, domain 2
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.92  E-value=1.3e-25  Score=161.26  Aligned_cols=91  Identities=33%  Similarity=0.634  Sum_probs=87.3

Q ss_pred             CCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCcc
Q psy10357         68 MDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVS  145 (252)
Q Consensus        68 ~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~  145 (252)
                      .++||||+|+++|+  |.|++++|+|++|.+++||+|.++|+++.++|++|+.+++++++|.|||+|+++|++++..+++
T Consensus         2 ~d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~~~i~   81 (95)
T d1jnya1           2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIK   81 (95)
T ss_dssp             GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCC
T ss_pred             CCcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCCceEEEEEEEecCCccCEEeCCCcEEEEEEcCcHHhcC
Confidence            46899999999997  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeCCCCCcc
Q psy10357        146 PGFVLCDPNNPAR  158 (252)
Q Consensus       146 ~G~vl~~~~~~~~  158 (252)
                      |||+||++++|++
T Consensus        82 rG~vl~~~~~~p~   94 (95)
T d1jnya1          82 RGDVVGHPNNPPT   94 (95)
T ss_dssp             TTCEEECTTSCCC
T ss_pred             CCCEEECCCccCC
Confidence            9999999998764

>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Eukaryotic peptide chain release factor ERF2, post-G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=6e-25  Score=157.72  Aligned_cols=90  Identities=38%  Similarity=0.813  Sum_probs=84.2

Q ss_pred             CCCCCCeeEEEeeEEcCCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEe-CCccceeecCCCeEEEEEeeeCCCCc
Q psy10357         66 RKMDGPFLMPVVEKFKDMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWS-DDEEVSSVGPGENIKVKLKGIEEDDV  144 (252)
Q Consensus        66 ~~~~~p~~~~I~~~~~g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i  144 (252)
                      |..++||||+|+++|+|.|++++|+|++|.+++||+|.++|+++.++|++|+. +++++++|.|||+|+++|++ +..++
T Consensus         4 R~~~~PlR~pV~d~~kg~G~vv~G~v~sG~i~~gd~v~i~P~~~~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~~-~~~di   82 (95)
T d1r5ba1           4 RKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDV   82 (95)
T ss_dssp             HHHTSCCEEECCEEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTC
T ss_pred             CCCCCCEEEEEEEEEcCCCEEEEEEEeeCeEeCCCEEEEecCCCEEEEEEEEEEccccccCcCCCCEEEEEEcC-ccccc
Confidence            45688999999999999999999999999999999999999999999999997 56889999999999999998 45799


Q ss_pred             cceeEEeCCCCC
Q psy10357        145 SPGFVLCDPNNP  156 (252)
Q Consensus       145 ~~G~vl~~~~~~  156 (252)
                      +||++||++++|
T Consensus        83 ~rG~vl~~~~~P   94 (95)
T d1r5ba1          83 QTGYVLTSTKNP   94 (95)
T ss_dssp             CTTCEEECSSSC
T ss_pred             CCCCEEEcCCCC
Confidence            999999999886

>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.3e-25  Score=155.63  Aligned_cols=87  Identities=31%  Similarity=0.535  Sum_probs=81.7

Q ss_pred             CCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCC
Q psy10357         68 MDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD  143 (252)
Q Consensus        68 ~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~  143 (252)
                      .++||||+|+++|+  |.|++++|+|++|.+++||+|.++|.+  ..++|++||+|++++++|.|||+|+|+|+|++.++
T Consensus         2 vd~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~~~~~~~~~a~aG~~v~l~L~gi~~~~   81 (92)
T d1efca1           2 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREE   81 (92)
T ss_dssp             GGSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEETTEEESEEETTCEEEEEETTCCGGG
T ss_pred             CCCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEEECCcCccccCCCCEEEEEEcCCCHHH
Confidence            47899999999996  899999999999999999999998876  56789999999999999999999999999999999


Q ss_pred             ccceeEEeCCC
Q psy10357        144 VSPGFVLCDPN  154 (252)
Q Consensus       144 i~~G~vl~~~~  154 (252)
                      ++||++||+|.
T Consensus        82 i~rG~vl~~pG   92 (92)
T d1efca1          82 IERGQVLAKPG   92 (92)
T ss_dssp             CCTTCEEECTT
T ss_pred             cCCccEEeCCC
Confidence            99999999873

>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-24  Score=158.34  Aligned_cols=92  Identities=29%  Similarity=0.645  Sum_probs=89.9

Q ss_pred             cEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecCC
Q psy10357        161 RVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFKL  240 (252)
Q Consensus       161 ~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~  240 (252)
                      .+|+|+|.+++++++|.+||++++|+|+.+++|+|.+|++++|++||+..+.+|+++++||.|.|++++++|+|+|.|++
T Consensus         2 ~sF~A~v~vl~hp~~I~~Gy~~v~h~ht~~~~~~i~kl~~~~d~~tg~~~~~~P~~l~~g~~a~v~i~~~~pi~vE~~~~   81 (107)
T d1f60a2           2 ASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSE   81 (107)
T ss_dssp             SEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTT
T ss_pred             CcEEEEEEEECCCCcccCCceEEEEecceeeeeEHhhhhhhhcccCCCEeccCCcccCCCCEEEEEEEeCCCCEEeeccC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeC
Q psy10357        241 FPQMGRFTLRDE  252 (252)
Q Consensus       241 ~~~lgrfilrd~  252 (252)
                      +++||||+|||+
T Consensus        82 ~p~LGRf~lRd~   93 (107)
T d1f60a2          82 YPPLGRFAVRDM   93 (107)
T ss_dssp             CGGGSEEEEEET
T ss_pred             CCCceeEEEEEC
Confidence            999999999995

>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor Tu (EF-Tu), domain 2
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.90  E-value=1.9e-24  Score=155.79  Aligned_cols=90  Identities=27%  Similarity=0.550  Sum_probs=83.9

Q ss_pred             CCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEeCCccceeecCCCeEEEEEeeeCC
Q psy10357         66 RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE  141 (252)
Q Consensus        66 ~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~  141 (252)
                      |+.++||||+|+++|+  |.|++++|++++|.+++||.+.++|..  ..++|++|+++++++++|.|||+|+|+|++++.
T Consensus         2 R~~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~~~~~~~~~a~aG~~v~l~l~gi~~   81 (98)
T d1d2ea1           2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKR   81 (98)
T ss_dssp             CCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCG
T ss_pred             CCCCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEEEeccEeccCCCCCEEEEEEcCCCH
Confidence            6789999999999996  899999999999999999999776555  567899999999999999999999999999999


Q ss_pred             CCccceeEEeCCCC
Q psy10357        142 DDVSPGFVLCDPNN  155 (252)
Q Consensus       142 ~~i~~G~vl~~~~~  155 (252)
                      ++++|||+||+++.
T Consensus        82 ~~i~rG~vl~~p~~   95 (98)
T d1d2ea1          82 EDLRRGLVMAKPGS   95 (98)
T ss_dssp             GGCCTTCEEESTTS
T ss_pred             HHccCccEEeCCCC
Confidence            99999999999875

>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=6.8e-26  Score=161.61  Aligned_cols=89  Identities=25%  Similarity=0.465  Sum_probs=85.8

Q ss_pred             CCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCC
Q psy10357         66 RKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDD  143 (252)
Q Consensus        66 ~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~  143 (252)
                      |+.+.||||+|+++|+  |.|++++|+|++|.+++||+|.++|+++.++|+||+++++++++|.|||+|+|+|++++.++
T Consensus         1 R~~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~~~   80 (92)
T d1wb1a1           1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQ   80 (92)
T ss_dssp             CCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSC
T ss_pred             CCCCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCCceEEEeeeEcCceeeEeCCCCEEEEEEcCCCHHH
Confidence            5678999999999996  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEeCCC
Q psy10357        144 VSPGFVLCDPN  154 (252)
Q Consensus       144 i~~G~vl~~~~  154 (252)
                      ++|||+||+++
T Consensus        81 i~rG~vl~~~~   91 (92)
T d1wb1a1          81 IYRGCILTSKD   91 (92)
T ss_dssp             CCSSCBCCCTT
T ss_pred             cCCcCEEeCCC
Confidence            99999999986

>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=1.3e-23  Score=154.14  Aligned_cols=93  Identities=31%  Similarity=0.737  Sum_probs=90.3

Q ss_pred             ecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeecC
Q psy10357        160 ARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQFK  239 (252)
Q Consensus       160 ~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~  239 (252)
                      +.+|+|+|.||+|+++|.+||++++|+|+.+++|+|.+|.+++|.+||+..+..|++++.||.|.|++++++|+|+|+|+
T Consensus         1 a~~F~A~v~vl~h~~~i~~Gy~~~~h~~t~~~~~~i~~i~~k~d~~tg~~~~~~p~~l~~g~~a~v~i~~~~~i~~e~~~   80 (107)
T d1jnya2           1 ADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYN   80 (107)
T ss_dssp             ESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTT
T ss_pred             CCeEEEEEEEEcCCCcccCCcEEEEEEehhcceEEeeeeeehhccccCcccccccccccCCceEEEEEEcCCceEEeecc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEeC
Q psy10357        240 LFPQMGRFTLRDE  252 (252)
Q Consensus       240 ~~~~lgrfilrd~  252 (252)
                      +++.||||+|||+
T Consensus        81 ~~~~lGrfilrd~   93 (107)
T d1jnya2          81 EFPPLGRFAMRDM   93 (107)
T ss_dssp             TSGGGTEEEEEET
T ss_pred             cCCCcCCEEEEEC
Confidence            9999999999996

>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=3.1e-22  Score=149.06  Aligned_cols=95  Identities=23%  Similarity=0.318  Sum_probs=86.2

Q ss_pred             CCCCCCCCeeEEEeeEEc--CC--------CeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCc
Q psy10357         64 LNRKMDGPFLMPVVEKFK--DM--------GTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDE  121 (252)
Q Consensus        64 ~~~~~~~p~~~~I~~~~~--g~--------G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~  121 (252)
                      |+|+.++||||+|+++|.  +.        |.+++|+|++|.|++||+|.++|+++            .++|+||+.+++
T Consensus         1 P~R~~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~~   80 (121)
T d1kk1a1           1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQ   80 (121)
T ss_dssp             CCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTE
T ss_pred             CCCCCCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEECCC
Confidence            578899999999999995  43        55999999999999999999999875            468999999999


Q ss_pred             cceeecCCCeEEEEEe---eeCCCCccceeEEeCCCCCcc
Q psy10357        122 EVSSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNNPAR  158 (252)
Q Consensus       122 ~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~  158 (252)
                      ++++|.|||+|+++|+   +++..|+.+|++|++++..++
T Consensus        81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~lpp  120 (121)
T d1kk1a1          81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP  120 (121)
T ss_dssp             EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCC
T ss_pred             CcCEEeCCCeEEEEecccCCcchhHhcceeEEECCCCCCC
Confidence            9999999999999998   888899999999999987543

>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.87  E-value=3.2e-22  Score=142.09  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=81.5

Q ss_pred             CCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccc
Q psy10357         69 DGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSP  146 (252)
Q Consensus        69 ~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~  146 (252)
                      +.+|||+|+++++  +.++.++|+|++|+|++||+|.++|+++.++|++|+++++++++|.+|++|+|+|+  +..++.|
T Consensus         4 ~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~~~~Vk~I~~~~~~~~~a~~G~~v~l~L~--~~~di~R   81 (92)
T d1zunb1           4 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISR   81 (92)
T ss_dssp             SSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCT
T ss_pred             CCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCceEEEeEEEEcCcccCEEcCCCEEEEEEc--CccccCC
Confidence            4589999999997  56788999999999999999999999999999999999999999999999999999  6789999


Q ss_pred             eeEEeCCCCCc
Q psy10357        147 GFVLCDPNNPA  157 (252)
Q Consensus       147 G~vl~~~~~~~  157 (252)
                      ||+||+++++|
T Consensus        82 Gdvl~~~~~~P   92 (92)
T d1zunb1          82 GDLLVHADNVP   92 (92)
T ss_dssp             TCEEEETTSCC
T ss_pred             CCEEecCCCCC
Confidence            99999998864

>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Hypothetical protein PF0907
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=1.2e-21  Score=138.92  Aligned_cols=83  Identities=23%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CCCCe-eEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCc
Q psy10357         68 MDGPF-LMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDV  144 (252)
Q Consensus        68 ~~~p~-~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i  144 (252)
                      ..+|+ ||+|+++|+  | |++++|+|++|.+++||+|.++|.  ..+|++|+++++++++|.|||+|+|+|++ +..++
T Consensus         5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~--~~~VksIq~~~~~v~~a~~G~~v~l~L~~-~~~di   80 (91)
T d1xe1a_           5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG--IGGIVRIERNREKVEFAIAGDRIGISIEG-KIGKV   80 (91)
T ss_dssp             CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSC--EEEEEEEEETTEEESEEETTCEEEEEEES-CCCCC
T ss_pred             cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCc--cEEEEEEEEcceEhhhhhhcceeEEEEcC-CcCCc
Confidence            45676 999999997  7 899999999999999999999984  67999999999999999999999999998 77789


Q ss_pred             cceeEEeCCC
Q psy10357        145 SPGFVLCDPN  154 (252)
Q Consensus       145 ~~G~vl~~~~  154 (252)
                      +|||+|...+
T Consensus        81 ~rGdvL~~~~   90 (91)
T d1xe1a_          81 KKGDVLEIYQ   90 (91)
T ss_dssp             CTTCEEEEEC
T ss_pred             CCCCEEEecc
Confidence            9999998653

>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=1.8e-20  Score=136.51  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=85.1

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEeeec
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLDQF  238 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~  238 (252)
                      .++.|+|+|.||+. .++.+|.+|.+++|+..++|+|.+|.+++|.+|+++.  .+++|+.||.+.|+|++++|+|+|+|
T Consensus         2 vs~~f~A~i~Wm~~-~pl~~g~~y~lk~~t~~~~a~v~~i~~~id~~t~~~~--~~~~l~~Ndi~~v~i~~~~~i~~d~y   78 (105)
T d1zunb2           2 VSDAFDAMLVWMAE-EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEG--PASSLQLNEIGRVKVSLDAPIALDGY   78 (105)
T ss_dssp             EEEEEEEEEEECCS-SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCC--CCSCBCTTCEEEEEEEEEEEEECCCT
T ss_pred             cccEEEEEEEEecC-CcCCCCCEEEEEEcccEEEEEecceeEEEecCCcccc--cccccCCccEEEEEEEECCccccCcc
Confidence            57899999999995 4689999999999999999999999999999988865  45899999999999999999999999


Q ss_pred             CCCCCceeEEEEeC
Q psy10357        239 KLFPQMGRFTLRDE  252 (252)
Q Consensus       239 ~~~~~lgrfilrd~  252 (252)
                      ++++.+|||+|+|+
T Consensus        79 ~~n~~~G~fiLiD~   92 (105)
T d1zunb2          79 SSNRTTGAFIVIDR   92 (105)
T ss_dssp             TTCTTTTEEEEECT
T ss_pred             ccCcCceeEEEEEC
Confidence            99999999999985

>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.83  E-value=6.2e-21  Score=141.36  Aligned_cols=91  Identities=23%  Similarity=0.272  Sum_probs=83.0

Q ss_pred             CCCCCCeeEEEeeEEc--C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccc
Q psy10357         66 RKMDGPFLMPVVEKFK--D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEV  123 (252)
Q Consensus        66 ~~~~~p~~~~I~~~~~--g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v  123 (252)
                      |+.+.||||+|+++|.  +        .|.|++|+|++|.|++||+|.++|+++            .++|++|++++.++
T Consensus         1 R~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v   80 (118)
T d1s0ua1           1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTIL   80 (118)
T ss_dssp             CCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEE
T ss_pred             CCCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEECCccc
Confidence            5678999999999995  4        355999999999999999999999874            58999999999999


Q ss_pred             eeecCCCeEEEEEe---eeCCCCccceeEEeCCCCC
Q psy10357        124 SSVGPGENIKVKLK---GIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       124 ~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~  156 (252)
                      ++|.||++|+++|+   +++..|+.+|+||+.++.-
T Consensus        81 ~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg~l  116 (118)
T d1s0ua1          81 RKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL  116 (118)
T ss_dssp             SEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCS
T ss_pred             CEEeCCCEEEEEeccCCCccHHHheeeeEEeCCCCC
Confidence            99999999999998   7889999999999999763

>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=1.5e-18  Score=127.55  Aligned_cols=89  Identities=20%  Similarity=0.312  Sum_probs=79.8

Q ss_pred             CCCCCCeeEEEeeEEc--C--------CCeEEEEEEEEeeeecCCEEEEecCCc------------eEEEEEEEeCCccc
Q psy10357         66 RKMDGPFLMPVVEKFK--D--------MGTVVMGKVESGEAKKGQSLVLMPNRT------------PVIVDQLWSDDEEV  123 (252)
Q Consensus        66 ~~~~~p~~~~I~~~~~--g--------~G~vv~G~v~~G~l~~gd~v~i~p~~~------------~~~V~sI~~~~~~v  123 (252)
                      |+.++|++|+|+++|.  +        +|.|++|+|++|.+++||+|.++|+++            .++|++|+.+++++
T Consensus         1 Rd~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~~~v   80 (114)
T d2qn6a1           1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEF   80 (114)
T ss_dssp             CCTTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEE
T ss_pred             CCCCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEEECCccc
Confidence            4678899999999995  3        466999999999999999999999885            47999999999999


Q ss_pred             eeecCCCeEEEEEe---eeCCCCccceeEEeCCC
Q psy10357        124 SSVGPGENIKVKLK---GIEEDDVSPGFVLCDPN  154 (252)
Q Consensus       124 ~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~  154 (252)
                      ++|.||++|+++|+   +++..|+.+|+||+.++
T Consensus        81 ~~A~aG~~V~i~l~~d~~isr~D~l~G~Vl~~~d  114 (114)
T d2qn6a1          81 KEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD  114 (114)
T ss_dssp             SEECSSSCEEEEESSCHHHHGGGTTTTCEEEETT
T ss_pred             CEEeCCCEEEEEeccCCCcchhheeeeeEEecCC
Confidence            99999999999999   78888999999998653

>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.52  E-value=3.7e-14  Score=105.95  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             CeeEEE--eeEEcCCCe-EEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCCccceeecCCCeEEEEEeeeCC-CCccc
Q psy10357         71 PFLMPV--VEKFKDMGT-VVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDDEEVSSVGPGENIKVKLKGIEE-DDVSP  146 (252)
Q Consensus        71 p~~~~I--~~~~~g~G~-vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~  146 (252)
                      |.++.|  +++|++.+. ++.|+|++|+|++||.|.+.|++...+|+||+.+++++++|.+|++|+++|.|... .++.+
T Consensus         4 P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~~~g~VksIq~~~~~v~~A~~G~~Vai~I~g~~~gr~i~~   83 (128)
T d1g7sa2           4 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHE   83 (128)
T ss_dssp             CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBCT
T ss_pred             eEEEEEcCCcEecCCCCeEEEEEEeeeeecCCCEEEECCCCceEEEEEEEECCccccEEcCCCEEEEEEcCcccCCCCCC
Confidence            555555  788987655 55559999999999999999999999999999999999999999999999998764 57999


Q ss_pred             eeEEeCC
Q psy10357        147 GFVLCDP  153 (252)
Q Consensus       147 G~vl~~~  153 (252)
                      ||+|++.
T Consensus        84 gD~L~s~   90 (128)
T d1g7sa2          84 GDTLYVD   90 (128)
T ss_dssp             TCEEEEC
T ss_pred             CCEEEEe
Confidence            9999864

>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Eukaryotic peptide chain release factor ERF2, C-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=6.3e-15  Score=98.01  Aligned_cols=67  Identities=45%  Similarity=0.600  Sum_probs=63.2

Q ss_pred             eecEEEEEEEEeccCCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEE
Q psy10357        159 TARVFDAQIVILEHKSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMR  226 (252)
Q Consensus       159 ~~~~f~a~i~~~~~~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~  226 (252)
                      ++++|+|+|.+|+++++|.+||++++|+|+.+++|+|.+|...+| +||+..+.+|+||+.||.++|+
T Consensus         2 a~~~F~A~I~vL~hp~~I~~Gy~~vlH~ht~~~~~~i~~l~~~~~-ktg~~~k~~P~flk~G~~~ive   68 (68)
T d1r5ba2           2 ATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAE   68 (68)
T ss_dssp             EEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCC-SSCCCCSSCCSBCCTTCBCCEE
T ss_pred             ceeEEEEEEEEEcCCCcccCCcEEEEEeeeeEEEEEhHHhHHHHh-cCCCEeccCCceecCCCEEEeC
Confidence            578999999999999999999999999999999999999999998 5899999999999999999875

>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor Tu (EF-Tu)
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.19  E-value=1.7e-11  Score=87.36  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             ecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357        160 ARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC  234 (252)
Q Consensus       160 ~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~  234 (252)
                      .++|+|+|++|+++     +++..||++.+||+++.++|+|...   .          ..+++.+||.+.++++|.+|++
T Consensus         1 h~~F~A~vyvL~~~EGGR~tp~~~gY~pq~~~~t~d~t~~i~~~---~----------~~~~v~PGd~~~v~~~l~~P~~   67 (103)
T d1d2ea2           1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILP---P----------GKELAMPGEDLKLTLILRQPMI   67 (103)
T ss_dssp             EEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECC---S----------SCCCBCTTCEEEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEECCcCCceeEEeecceeeEEEecccccEEEEec---C----------CccccccCCceEEEEEECCcee
Confidence            36899999999986     7899999999999999999987421   1          1278999999999999999999


Q ss_pred             eeecCCCCCceeEEEEeC
Q psy10357        235 LDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       235 ~~~~~~~~~lgrfilrd~  252 (252)
                      ++...      ||.|||.
T Consensus        68 le~g~------rF~iREg   79 (103)
T d1d2ea2          68 LEKGQ------RFTLRDG   79 (103)
T ss_dssp             CCTTC------EEEEEET
T ss_pred             ecCCC------EEEEEEC
Confidence            99875      9999984

>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor G (EF-G), domain II
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=1.1e-10  Score=85.99  Aligned_cols=86  Identities=21%  Similarity=0.277  Sum_probs=73.7

Q ss_pred             CCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeCC----ccceeecCCCeEEEEEeeeC
Q psy10357         67 KMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSDD----EEVSSVGPGENIKVKLKGIE  140 (252)
Q Consensus        67 ~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~  140 (252)
                      +.+.||++.|..++.  ..|.+..+||.+|+|+.||.|+..-.++..+|..|...+    .++++|.|||++++.  ++ 
T Consensus        22 d~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~--gl-   98 (121)
T d2bv3a1          22 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GL-   98 (121)
T ss_dssp             CTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTCEEEEE--SC-
T ss_pred             CCCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccCCCEEEEeeeeeeecccccEeeEeccccceEEe--cc-
Confidence            347899999999864  569999999999999999999998888899999997753    588999999999874  43 


Q ss_pred             CCCccceeEEeCCCCC
Q psy10357        141 EDDVSPGFVLCDPNNP  156 (252)
Q Consensus       141 ~~~i~~G~vl~~~~~~  156 (252)
                       .++..||+||+.++|
T Consensus        99 -~~~~~GDTl~~~~~p  113 (121)
T d2bv3a1          99 -KETITGDTLVGEDAP  113 (121)
T ss_dssp             -SSCCTTCEEEETTSC
T ss_pred             -CCceeCCEEecCCCC
Confidence             578899999999875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.11  E-value=1.9e-11  Score=99.70  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSL   64 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~   64 (252)
                      +.+..++..+++++++ .+.+++|||+||++|+|+.+++  ++++||+|+||+++|+.++.+
T Consensus       163 ~~~~~~l~~~~~~~~~-~~~~i~~IPiSA~~G~ni~~~s--~~~~wy~g~tl~e~ld~~~i~  221 (222)
T d1zunb3         163 ESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS--ERSPWYAGQSLMEILETVEIA  221 (222)
T ss_dssp             HHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC--TTCTTCCSCCTTHHHHHSCCT
T ss_pred             hhhHHHHhhhhHhhcc-CCCceEEEEEEcccCccCCcCc--ccCCCCcCChHHHHHhcCCCC
Confidence            3456677888888886 6789999999999999999987  899999999999999999865

>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor Tu (EF-Tu)
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.1e-10  Score=81.60  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=64.3

Q ss_pred             ecEEEEEEEEeccC-----CcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEE
Q psy10357        160 ARVFDAQIVILEHK-----SIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVIC  234 (252)
Q Consensus       160 ~~~f~a~i~~~~~~-----~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~  234 (252)
                      .++|+|+|++|+++     +++..||++.+|+.++.+.|++...   .          ..+++.+||.+.++++|.+|++
T Consensus         1 h~~F~A~vyiL~~~EGGR~tp~~~~Y~pq~~~~t~d~~~~i~~~---~----------~~~~v~PGd~~~v~l~l~~p~~   67 (93)
T d2c78a2           1 HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLP---P----------GVEMVMPGDNVTFTVELIKPVA   67 (93)
T ss_dssp             EEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECC---T----------TCCCBCTTCEEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEeccccCceEEEeecchhhhhccccccceEEEec---C----------CceEEcccceEEEEEEEcccEE
Confidence            36899999999985     8999999999999999999887521   1          1268999999999999999999


Q ss_pred             eeecCCCCCceeEEEEeC
Q psy10357        235 LDQFKLFPQMGRFTLRDE  252 (252)
Q Consensus       235 ~~~~~~~~~lgrfilrd~  252 (252)
                      ++...      ||.|||.
T Consensus        68 le~g~------rF~iREg   79 (93)
T d2c78a2          68 LEEGL------RFAIREG   79 (93)
T ss_dssp             ECTTC------EEEEEET
T ss_pred             EcCCC------EEEEEEC
Confidence            99987      9999984

>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor G (EF-G), domain II
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.99  E-value=1.5e-10  Score=82.96  Aligned_cols=86  Identities=28%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             CCCCCCCeeEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCceEEEEEEEeC----CccceeecCCCeEEEEEee
Q psy10357         65 NRKMDGPFLMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRTPVIVDQLWSD----DEEVSSVGPGENIKVKLKG  138 (252)
Q Consensus        65 ~~~~~~p~~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~  138 (252)
                      .++.+.||++.|.+++.  ..|++..+||.+|+|+.||.|...  +...++..+...    ..++++|.|||++++  .+
T Consensus         3 ~~~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~--~~~~~~~~~~~~~~~~~~~v~~~~aGdI~~v--~g   78 (103)
T d2dy1a1           3 ERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSE--AGQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PK   78 (103)
T ss_dssp             HHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCT--TSCEEESSEEEEETTEEEEESCEETTCEEEE--SS
T ss_pred             CCCCCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEe--ecccccceeeeeecCcceecCEecCCCEEEE--eC
Confidence            45678999999999864  579999999999999999998753  445566666554    257889999999875  54


Q ss_pred             eCCCCccceeEEeCCCCC
Q psy10357        139 IEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       139 ~~~~~i~~G~vl~~~~~~  156 (252)
                        ..++..||+||+.+.|
T Consensus        79 --~~~~~iGDTl~~~~~p   94 (103)
T d2dy1a1          79 --AEGLHRGMVLWQGEKP   94 (103)
T ss_dssp             --CTTCCTTCEEESSSCC
T ss_pred             --CCCCccCCEEcCCCCc
Confidence              4578999999998775

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=1.2e-10  Score=96.15  Aligned_cols=59  Identities=19%  Similarity=0.485  Sum_probs=47.6

Q ss_pred             hhHHHHHHhccccccccc-CceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccC
Q psy10357          3 ESVKYAVSFWQPKLWTVR-QEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDAL   61 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~-~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i   61 (252)
                      +.+..+++.+++++..++ ..++||||+||++|+|+.++....+|+||+||||+++|+.+
T Consensus       185 ~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~~~~wy~G~tl~~~ld~~  244 (245)
T d1r5ba3         185 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSM  244 (245)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhccCCCCCCCchHHHHHhcC
Confidence            345667777777775433 45789999999999999988544779999999999999976

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.87  E-value=7.8e-10  Score=89.89  Aligned_cols=61  Identities=15%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhccCCCCCC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDALPSLNR   66 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~i~~~~~   66 (252)
                      +.+..++..+++.++. ...+++|||+||.+|+|+.+.+  ++++||+||+|+++|+.+++|+|
T Consensus       164 ~~v~~~i~~~~~~~~~-~~~~i~~IPISA~~G~NV~~~s--~~~~wy~~~~L~~~Ld~i~~P~~  224 (224)
T d1jnya3         164 KEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHKS--ENMKWYNGPTLEEYLDQLELPPK  224 (224)
T ss_dssp             HHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBCC--SSCTTCCSCCHHHHHTTCCCCCC
T ss_pred             HHHHHHHHhHHHhcCC-CcccCeEEEEEccCCCCccccc--ccCCCcccccHHHHHhcCCCcCC
Confidence            4566778888888776 6778999999999999999887  88999999999999999998875

>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor 2 (eEF-2), domain II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.1e-08  Score=76.67  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             CCCCCeeEEEeeEE-c-CCCe-EEEEEEEEeeeecCCEEEEecCC---------ceEEEEEEEeCC----ccceeecCCC
Q psy10357         67 KMDGPFLMPVVEKF-K-DMGT-VVMGKVESGEAKKGQSLVLMPNR---------TPVIVDQLWSDD----EEVSSVGPGE  130 (252)
Q Consensus        67 ~~~~p~~~~I~~~~-~-g~G~-vv~G~v~~G~l~~gd~v~i~p~~---------~~~~V~sI~~~~----~~v~~a~aG~  130 (252)
                      +.+.||.+.|.... . ..|+ +..|||.+|+|+.||.|++...+         ...+|..|..+.    .++++|.|||
T Consensus        30 d~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~v~~a~AGd  109 (138)
T d1n0ua1          30 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGN  109 (138)
T ss_dssp             CTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTC
T ss_pred             CCCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceeeEeEEecCc
Confidence            56899999999885 3 5677 47799999999999999997432         346788887753    5899999999


Q ss_pred             eEEEEEeeeCCCCccceeEEeCCCCC
Q psy10357        131 NIKVKLKGIEEDDVSPGFVLCDPNNP  156 (252)
Q Consensus       131 ~v~l~l~~~~~~~i~~G~vl~~~~~~  156 (252)
                      +|++  .|++. .+.+|++||+.+++
T Consensus       110 Ivai--~Gl~~-~i~k~~Tl~~~~~~  132 (138)
T d1n0ua1         110 IIGL--VGIDQ-FLLKTGTLTTSETA  132 (138)
T ss_dssp             EEEE--ESCTT-TCCSSEEEESCTTC
T ss_pred             EEEE--ecccc-ceeccceecCCCCC
Confidence            9987  56642 26679999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=5.4e-09  Score=85.71  Aligned_cols=63  Identities=22%  Similarity=0.347  Sum_probs=53.9

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc------------CchHHhhccCCCCCCCC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG------------GAFIPFIDALPSLNRKM   68 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g------------~~L~~~l~~i~~~~~~~   68 (252)
                      +.+..++..+++++++ +...++|+|+||+.|+|+.+.+  .+++||+|            +||+++||++++|.|++
T Consensus       165 ~~~~~el~~~l~~~~~-~~~~i~~ipiSa~~G~ni~~~s--~~~~wykg~~~~~~~~~~~~~TLlEaLD~I~~P~R~t  239 (239)
T d1f60a3         165 QEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEAT--TNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT  239 (239)
T ss_dssp             HHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBCC--SSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCT
T ss_pred             HHHHHHHHHHHHhcCC-CCCcEEEEEEEccCCCcceecc--ccCccccCcccccccCccccccHHHHhhCCCCCCCCC
Confidence            3456778888888886 6678999999999999999887  78999976            89999999999998863

>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.91  E-value=8.4e-06  Score=56.75  Aligned_cols=78  Identities=22%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             eEEEeeEEc--CCCeEEEEEEEEeeeecCCEEEEecCCc---eEEEEEEEeCCccceeecCCCeEEEEEeeeCCCCccce
Q psy10357         73 LMPVVEKFK--DMGTVVMGKVESGEAKKGQSLVLMPNRT---PVIVDQLWSDDEEVSSVGPGENIKVKLKGIEEDDVSPG  147 (252)
Q Consensus        73 ~~~I~~~~~--g~G~vv~G~v~~G~l~~gd~v~i~p~~~---~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G  147 (252)
                      ++.|-.+|+  ..|.+.-++|.+|.++.+..+.++-.++   ..+|.|+..+.+++.++..|.-+++.|.  +..++..|
T Consensus         8 ~A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l~--~~~d~~~G   85 (99)
T d1d1na_           8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIK--NFNDIKEG   85 (99)
T ss_dssp             EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECT--TCSSCSSC
T ss_pred             EEEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeecccccccCEecCCeEEEEEec--CccCCCCC
Confidence            456777886  3588999999999999999999999885   4599999999999999999999999998  56799999


Q ss_pred             eEEeC
Q psy10357        148 FVLCD  152 (252)
Q Consensus       148 ~vl~~  152 (252)
                      |+|-.
T Consensus        86 D~ie~   90 (99)
T d1d1na_          86 DVIEA   90 (99)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99854

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.70  E-value=1.8e-06  Score=68.10  Aligned_cols=57  Identities=14%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCccCchHHhhcc-CCCC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKGGAFIPFIDA-LPSL   64 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g~~L~~~l~~-i~~~   64 (252)
                      |.++.+++.+++++++ .++++||||+||++|.+...    ..++||++++|+++|+. +|+|
T Consensus       139 ~~i~~~i~~~l~~~~~-~~~~~pii~iSa~~g~~~~~----~~~~~~~~~~Lldai~~~iP~P  196 (196)
T d1d2ea3         139 ELVELEIRELLTEFGY-KGEETPIIVGSALCALEQRD----PELGLKSVQKLLDAVDTYIPVP  196 (196)
T ss_dssp             HHHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHTTCC----TTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhCC-CcccCEEEEEEccccccccC----cccccCCHHHHHHHHHhhCCCC
Confidence            4577788999988886 67889999999999976433    56899999999998865 7765

>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.26  E-value=0.012  Score=40.28  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=58.5

Q ss_pred             CCCeeEEEeeEE--cCCCeEEEEEEEEeeeecCCEEEEecCC--ceEEEEEEEe------------CCccceeecCCCeE
Q psy10357         69 DGPFLMPVVEKF--KDMGTVVMGKVESGEAKKGQSLVLMPNR--TPVIVDQLWS------------DDEEVSSVGPGENI  132 (252)
Q Consensus        69 ~~p~~~~I~~~~--~g~G~vv~G~v~~G~l~~gd~v~i~p~~--~~~~V~sI~~------------~~~~v~~a~aG~~v  132 (252)
                      +.|.+-.|-++.  +|.|.+.+--|.+|+|++||.+.+....  ...+|+++..            ..+.+++|.|..-|
T Consensus         2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV   81 (101)
T d1g7sa1           2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI   81 (101)
T ss_dssp             TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred             CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence            556777787775  4889999999999999999999998765  3457887753            23578889988877


Q ss_pred             EEEEeeeCCCCccceeEE
Q psy10357        133 KVKLKGIEEDDVSPGFVL  150 (252)
Q Consensus       133 ~l~l~~~~~~~i~~G~vl  150 (252)
                      .+...+++  ++-.|+-+
T Consensus        82 kI~a~gLe--~v~aG~~~   97 (101)
T d1g7sa1          82 KIVAPGID--DVMAGSPL   97 (101)
T ss_dssp             EEECSSCT--TBCTTCEE
T ss_pred             EEEcCCCC--cCCCCCEE
Confidence            77545433  33356543

>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor SelB, domain 3
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.09  E-value=0.0058  Score=41.28  Aligned_cols=81  Identities=9%  Similarity=-0.042  Sum_probs=59.2

Q ss_pred             ceecEEEEEEEEecc-CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCceEEee
Q psy10357        158 RTARVFDAQIVILEH-KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGVICLD  236 (252)
Q Consensus       158 ~~~~~f~a~i~~~~~-~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~i~~~  236 (252)
                      +..+.|.|.+.+.+. +..+.+-..+++++|...++|++..... +.- .++....-.+.+.+|+.+.|-++|++++.++
T Consensus         3 ~~vdkivaKvki~diF~ynl~pKmkvHlnVGml~VPA~ivp~kk-~~~-~~~~e~iil~ev~~G~ecYc~feL~ekV~ae   80 (116)
T d1wb1a3           3 QTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKK-VTF-GKTEENIILNEVISGNECYCAFELEEKVLAE   80 (116)
T ss_dssp             CCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEE-CCS-SSCCCEEECCSSCCSSCCCEEEEEEEEECCC
T ss_pred             chhhhheeeeEehhhhcccCCcceEEEEEeeeEEeeeEEeeeEE-eec-CCCcCCEehhhhcCCceEEEEEEeCchhhhh
Confidence            456778888777664 4457888899999999999999876422 221 1222222347799999999999999999998


Q ss_pred             ecCC
Q psy10357        237 QFKL  240 (252)
Q Consensus       237 ~~~~  240 (252)
                      ..+.
T Consensus        81 ~GDr   84 (116)
T d1wb1a3          81 VGDR   84 (116)
T ss_dssp             SSCC
T ss_pred             cCCe
Confidence            7663

>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.54  E-value=0.17  Score=33.83  Aligned_cols=66  Identities=11%  Similarity=0.046  Sum_probs=48.3

Q ss_pred             eecEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEe
Q psy10357        159 TARVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEA  229 (252)
Q Consensus       159 ~~~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l  229 (252)
                      +..+++.+.++|+.         -.+++.|....+.+|+....+++.++.                    +|  .+++.|
T Consensus         5 ~~~~i~i~~~Ll~r~vG~~~~~kV~pi~~~E~LmlniGtatt~G~V~~vk--------------------~d--~~~v~L   62 (95)
T d2qn6a2           5 VLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK--------------------KD--EIEVEL   62 (95)
T ss_dssp             EEEEEEEEEEECSSCC-------CCCCCTTCEEEEEETTEEEEEEEEEEC--------------------SS--EEEEEE
T ss_pred             cEEEEEEEEEehHhhhCCCccccccCCcCCCEEEEEeccccccEEEEEEe--------------------CC--EEEEEe
Confidence            34568888888864         126899999999999999999987652                    12  568899


Q ss_pred             CceEEeeecCCCCCcee
Q psy10357        230 AGVICLDQFKLFPQMGR  246 (252)
Q Consensus       230 ~~~i~~~~~~~~~~lgr  246 (252)
                      ..|+|++..+..=+++|
T Consensus        63 ~~Pvca~~g~~rVaiSR   79 (95)
T d2qn6a2          63 RRPVAVWSNNIRTVISR   79 (95)
T ss_dssp             EEEEECSSSSEEEEEEE
T ss_pred             cCCEEecCCCcEEEEEE
Confidence            99999876543333444

>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.96  E-value=0.39  Score=31.64  Aligned_cols=57  Identities=11%  Similarity=0.119  Sum_probs=43.2

Q ss_pred             cEEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCc
Q psy10357        161 RVFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAG  231 (252)
Q Consensus       161 ~~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~  231 (252)
                      .+|+.++.+|+.         -.+++.|....+.+|+....+++.++.                    +|  .+++.|..
T Consensus         3 ~~i~i~~~Ll~r~vG~~~~~kV~~i~~~E~LmlnvGtatt~G~V~~vk--------------------~d--~~~i~L~~   60 (90)
T d1s0ua2           3 EKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSAR--------------------GD--IADIKLKL   60 (90)
T ss_dssp             EEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEE
T ss_pred             EEEEEEEehhhHhhCCCccccccCCcCCCEEEEEeccccccEEEEEEe--------------------CC--EEEEEecC
Confidence            456666677653         126899999999999999999887642                    12  56889999


Q ss_pred             eEEeeecC
Q psy10357        232 VICLDQFK  239 (252)
Q Consensus       232 ~i~~~~~~  239 (252)
                      |+|.+..+
T Consensus        61 PvCa~~g~   68 (90)
T d1s0ua2          61 PICAEIGD   68 (90)
T ss_dssp             EEECCTTC
T ss_pred             CEECCCCC
Confidence            99998665

>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.94  E-value=0.35  Score=31.81  Aligned_cols=56  Identities=11%  Similarity=0.083  Sum_probs=41.3

Q ss_pred             EEEEEEEEecc---------CCcCCCCCEEEEEEEeeEEEEEEEEEEEeecccCCcccccCCceecCCCEEEEEEEeCce
Q psy10357        162 VFDAQIVILEH---------KSIICAGYSAVMHIHCVAEEVNVKALICLIDKKTGEKSKTRPRFVKQDQIAIMRLEAAGV  232 (252)
Q Consensus       162 ~f~a~i~~~~~---------~~~i~~g~~~~l~~~~~~~~~~i~~i~~~~d~~tg~~~~~~~~~l~~g~~~~v~l~l~~~  232 (252)
                      +|+.++.+|+.         -.+++.|....+.+|+....++|.++.                    +|  .+++.|..|
T Consensus         3 ~i~i~~~Ll~r~vG~~~~~kV~pi~~~E~LmlnvGtatt~G~V~~vk--------------------~d--~~~v~L~~P   60 (89)
T d1kk1a2           3 SLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIP   60 (89)
T ss_dssp             EEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEE
T ss_pred             EEEEEEEEhHHhhCCcccccccCCcCCCEEEEEeccccccEEEEEEe--------------------Cc--EEEEEeCCC
Confidence            45555555543         136899999999999999999987752                    12  558888899


Q ss_pred             EEeeecC
Q psy10357        233 ICLDQFK  239 (252)
Q Consensus       233 i~~~~~~  239 (252)
                      +|.+..+
T Consensus        61 vca~~g~   67 (89)
T d1kk1a2          61 VCAEPGD   67 (89)
T ss_dssp             EECCTTC
T ss_pred             EECCCCC
Confidence            9998665

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.43  E-value=0.072  Score=39.40  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=17.2

Q ss_pred             CceeEEEecccccCCcccCC
Q psy10357         21 QEILLIISPSGQMGQNLKEP   40 (252)
Q Consensus        21 ~~~~~~ipiS~~~G~ni~~~   40 (252)
                      ....+++++||++|+|+.++
T Consensus       140 ~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2         140 REGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             TTTSCEEECCTTTCTTHHHH
T ss_pred             hcCCeEEEEEcCCCCCHHHH
Confidence            45678999999999999875

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.00  E-value=0.046  Score=42.06  Aligned_cols=57  Identities=12%  Similarity=0.038  Sum_probs=37.1

Q ss_pred             hhHHHHHHhcccccccccCceeEEEecccccCCcccCCCCCCcCCCCcc------CchHHhhcc-CC
Q psy10357          3 ESVKYAVSFWQPKLWTVRQEILLIISPSGQMGQNLKEPVGPEICTWWKG------GAFIPFIDA-LP   62 (252)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~ipiS~~~G~ni~~~~~~~~~~w~~g------~~L~~~l~~-i~   62 (252)
                      +.++.++..+++.+++ ...+++|+|+||+.|.+....+  ....|+.+      ..|+++++. +|
T Consensus       140 ~~~~~~i~~~l~~~~~-~~~~i~~i~~sa~~~~~~~~~~--~~~~~~~~~~~~~I~eLLdaIde~iP  203 (204)
T d2c78a3         140 DLVEMEVRDLLNQYEF-PGDEVPVIRGSALLALEQMHRN--PKTRRGENEWVDKIWELLDAIDEYIP  203 (204)
T ss_dssp             HHHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHHHHHHC--TTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCC-CcccceeeeeechhhhhhhhcC--ccccCCcccchhhHHHHHHHHHHhCc
Confidence            4456777777777765 5677899999999998765543  33444433      345565533 44