Psyllid ID: psy1036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGASEDLKS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHccHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHccccccccccccHHHHHHHHccHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHccHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccEEEcccccccEHEccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHccccccEEEEcccccHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEccccccHHHHHHHHHcccHHHHHcc
Coil and Loop (DISEMBL)
ERVFDNKEEALLFIKKNKKIRFKSFRnfqdaqnfayhgscgvntslleapaspstvtaadpsalpqvsslaaaekpspfkslksQELVKLRKLIEKGNLADVRKlvwdnprylvssgdfptilhegcrynalhvstkavNPAMTEMLLEIIgnpaftnllydsdtpsyierSDILLDLYvntpdkalnetplhfaakFGSVECVKRLIGCAKIqtsvrnkegktpldvcfkmpsvdsmgplstkltptkvatksegteegervfDNKEEALLFIKKNKKIRFKSFRnfqdaqnfayhgscgvntslleapaspstvtaadpsalpqvsslaaaekpspfkslksQELVKLRKLIEKGNLADVRKlvwdnprylvssgdfptILHVVCSrcsgasedlks
Flexible Loop (DISEMBL)
ervfdnkeeallfikknkkirFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLaaaekpspfkslksqelVKLRKLiekgnladvrklvwdnpryLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAkiqtsvrnkegktpldvcfkmpsvdsmgplstkltptkvatksegteegervfdnkeeALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLaaaekpspfkslksqelVKLRKLiekgnladvrklvwDNPRYLVssgdfptilHVVCSRCSGASEDLKS
Low Complexity Region (SEG)
ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGASEDLKS
Disordered region (IsUnstruct)
*********ALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSL****************************************LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK*************************************EALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSL****************************************LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC*********
Disordered Region (DISOPRED)
ERVFDNKEEALLFIKKNKKIRFK*FRNFQDAQNFAYHGSCGVNT********************************************KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVC************
Disordered Region (DISEMBL)
ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPT**************VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGASEDLKS
Disordered Region (DISPRO)
*RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTS*********************************FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPAS********PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGASEDLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q7TP65	964	Ankyrin repeat and LEM do	yes	N/A	0.563	0.233	0.405	1e-38
Q6P1H6	964	Ankyrin repeat and LEM do	yes	N/A	0.563	0.233	0.405	4e-38
Q86XL3	938	Ankyrin repeat and LEM do	yes	N/A	0.563	0.239	0.394	1e-37
H2KZB2	603	Ankyrin repeat and LEM do	yes	N/A	0.481	0.318	0.352	3e-28
Q5BKI6	318	Ankyrin repeat domain-con	no	N/A	0.280	0.352	0.325	2e-05
Q4KL97	318	Ankyrin repeat domain-con	N/A	N/A	0.280	0.352	0.317	0.0001

>sp|Q7TP65|ANKL2_RAT Ankyrin repeat and LEM domain-containing protein 2 OS=Rattus norvegicus GN=Ankle2 PE=2 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 137/237 (57%), Gaps = 12/237 (5%)

Query: 3   VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLE----APASP 53
           V+++K+EAL  +K  K  RFK+F   +DA+ FA     Y  S   N SLL      P   
Sbjct: 226 VYEDKKEALQAVKLIKGSRFKAFPTREDAEKFARGICDYLPSPSKNMSLLSPVKAMPLCS 285

Query: 54  STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
           +    AD   L + S     E+ + +K+ ++Q+L  KLRK +E+G       L+W NPRY
Sbjct: 286 NDGPKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVERGEEHTFSDLIWSNPRY 344

Query: 113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERS 172
           L+ SGD PTI+ EGCRYN +HV+ K    ++ ++ LE + NP F  L+Y  D    +++ 
Sbjct: 345 LIGSGDNPTIVQEGCRYNVMHVAAKENQASVCQLTLETLENPEFMRLMYPDDNMDMLQKR 404

Query: 173 DI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
            + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + RNK GKTP DV
Sbjct: 405 ILYIVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNKYGKTPEDV 461

Rattus norvegicus (taxid: 10116)

>sp|Q6P1H6|ANKL2_MOUSE Ankyrin repeat and LEM domain-containing protein 2 OS=Mus musculus GN=Ankle2 PE=2 SV=2

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 12/237 (5%)

Query: 3   VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLE----APASP 53
           V+++K+EAL   K  K  RFK+FR  +DA+ FA     Y  S    T LL      P   
Sbjct: 225 VYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAVPLGG 284

Query: 54  STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
           S    AD   L + S     E+ + +K+ ++Q+L  KLRK +E G       L+W NPRY
Sbjct: 285 SDGLKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSNPRY 343

Query: 113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERS 172
           L+ SGD PTI+ EGCRYN +HV+ K    +M ++ LE + NP F  L+Y  D    +++ 
Sbjct: 344 LIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKR 403

Query: 173 DI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
            + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + +NK GKTP +V
Sbjct: 404 ILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEV 460

Mus musculus (taxid: 10090)

>sp|Q86XL3|ANKL2_HUMAN Ankyrin repeat and LEM domain-containing protein 2 OS=Homo sapiens GN=ANKLE2 PE=1 SV=4

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 3   VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTSLLEAPASPSTVT 57
           V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C        TSL  +P   + + 
Sbjct: 218 VYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTSLPLSPVKTAPLF 276

Query: 58  AAD---PSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYL 113
           + D          S     E+ + +K+ ++Q+L  KLRK +EKG       L+W NPRYL
Sbjct: 277 SNDRLKDGLCLSESETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDTFSDLIWSNPRYL 336

Query: 114 VSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RS 172
           + SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+Y  D  + ++ R 
Sbjct: 337 IGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLMYPDDDEAMLQKRI 396

Query: 173 DILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
             ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RNK  KTP DV
Sbjct: 397 RYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNKYDKTPEDV 452

Homo sapiens (taxid: 9606)

>sp|H2KZB2|ANKL2_CAEEL Ankyrin repeat and LEM domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=lem-4l PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 21/213 (9%)

Query: 16  KNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEK 75
           K+   RFK F   ++A +F  +G         +AP +P TV    P+           E 
Sbjct: 69  KSMSARFKKFGTPREAMDFLAYG---------DAPTTPKTVPPVAPT-----------EP 108

Query: 76  PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHV 134
            SPF  +   ++ + +K +EKG++ +  +LV  NPR+LV++G D  +I+ EG RYNALH+
Sbjct: 109 NSPFSGVNRIQMNEFKKYVEKGDMENFLRLVDSNPRFLVNTGGDVASIVMEGFRYNALHI 168

Query: 135 STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHF 194
           + KA    +   +LE+I N  F   LY +       R   +LD Y+NTPDK  ++TPLHF
Sbjct: 169 AAKAGQTEIIAKILELIQNIDFLIRLYGTGADDVTLRKINILDSYLNTPDKGNSDTPLHF 228

Query: 195 AAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
           A+KFG +  V+ L   +    ++ NK GK+ LD
Sbjct: 229 ASKFGKIGVVRVLTENSATDRTLLNKSGKSALD 261

Involved in mitotic nuclear envelope reassembly by promoting dephosphorylation of baf-1 during mitotic exit. Coordinates the control of baf-1 dephosphorylation by inhibiting VRK1 kinase and promoting dephosphorylation of baf-1 by protein phosphatase 2A (PP2A), thereby facilitating nuclear envelope assembly. It is unclear whether it acts as a real PP2A regulatory subunit or whether it is involved in recruitment of the PP2A complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5BKI6|ANKR1_XENTR Ankyrin repeat domain-containing protein 1 OS=Xenopus tropicalis GN=ankrd1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 11/123 (8%)

Query: 111 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL-----YDSDT 165
           +YL   GD P    E  R  ALH +    +  M E L+E   N  F ++L     + +  
Sbjct: 137 KYLADGGD-PNTCDEYKR-TALHRACSEGHTDMVEKLIEAGANIEFKDMLESTALHWTCR 194

Query: 166 PSYIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 223
              +E   +LL+    +N  DK L+ TPLH A + G  EC + LI C +     R++EG 
Sbjct: 195 GGSVETLKLLLNKGAAINARDKLLS-TPLHVAVRTGHYECAEHLIAC-EADLHARDREGD 252

Query: 224 TPL 226
           TP+
Sbjct: 253 TPM 255

May act as a nuclear transcription factor that negatively regulates the expression of cardiac genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q4KL97|ANKR1_XENLA Ankyrin repeat domain-containing protein 1 OS=Xenopus laevis GN=ankrd1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 11/123 (8%)

Query: 111 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL-----YDSDT 165
           +YL   GD P    E  R  ALH +    + A+ E L+E   N  F ++L     + +  
Sbjct: 137 KYLADGGD-PNTCDEYKR-TALHRACSEGHTAIVEKLIEAGANIEFKDMLESTALHWTCR 194

Query: 166 PSYIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 223
              +E   +LL+    +N  DK L+ TPLH A + G  EC + LI C +   + +++EG 
Sbjct: 195 GGSVETLKLLLNKGAAINARDKLLS-TPLHVAVRTGYYECGEHLIAC-EADLNAKDREGD 252

Query: 224 TPL 226
           TP+
Sbjct: 253 TPM 255

May act as a nuclear transcription factor that negatively regulates the expression of cardiac genes.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
91080401	815	PREDICTED: similar to ANK repeat and LEM	0.586	0.287	0.453	5e-51
345489008	575	PREDICTED: ankyrin repeat and LEM domain	0.551	0.382	0.449	2e-49
350414585	571	PREDICTED: ankyrin repeat and LEM domain	0.523	0.366	0.434	3e-44
340715082	570	PREDICTED: ankyrin repeat and LEM domain	0.523	0.366	0.430	3e-44
357614607	1337	hypothetical protein KGM_15711 [Danaus p	0.518	0.154	0.442	1e-43
307198922	583	Ankyrin repeat and LEM domain-containing	0.531	0.363	0.414	3e-43
194674594	958	PREDICTED: ankyrin repeat and LEM domain	0.561	0.233	0.437	3e-42
187608335	961	ankyrin repeat and LEM domain-containing	0.571	0.237	0.415	3e-41
157131979	1151	hypothetical protein AaeL_AAEL012290 [Ae	0.526	0.182	0.466	2e-40
157138509	880	hypothetical protein AaeL_AAEL014011 [Ae	0.526	0.238	0.466	2e-40

>gi|91080401|ref|XP_966987.1| PREDICTED: similar to ANK repeat and LEM domain-containing protein KIAA0692 [Tribolium castaneum] gi|270005746|gb|EFA02194.1| hypothetical protein TcasGA2_TC007850 [Tribolium castaneum]

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/247 (45%), Positives = 155/247 (62%), Gaps = 13/247 (5%)

Query: 1   ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAAD 60
           + ++ +K EA+  +KK KK RFK F  F DA  FA  G+        E P SP  V  + 
Sbjct: 48  DYIYKDKAEAMKMVKKTKKARFKHFEFFHDALKFASVGAA-------ETPNSPPVVNGS- 99

Query: 61  PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP 120
              +  ++S    E+ SPFK  K Q+LVKLRK IE G++   R+ VW+NPRYL+SSGD P
Sbjct: 100 ---VKGLNSQVVNERLSPFKGPKPQDLVKLRKAIETGDVDTFRQAVWENPRYLISSGDTP 156

Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RSDILLDLY 179
           +IL EG RYNALHV+ KA +  +TE++L  I NP F  LLY  D    +E R  +LLDLY
Sbjct: 157 SILQEGFRYNALHVAAKAKSGILTEVILNTISNPKFVKLLYGDDVNENVESRIQVLLDLY 216

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP-LDVCFKMPSVDSM 238
           +NTPDK LNETPLHFAAKFG+V+ V+ L+   +   S++NK G+TP + +C +  +++  
Sbjct: 217 LNTPDKGLNETPLHFAAKFGAVDVVEVLVSFPECDKSLKNKYGQTPDMIICDRCDNIEGA 276

Query: 239 GPLSTKL 245
             +  K+
Sbjct: 277 SIIKKKI 283

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489008|ref|XP_001602806.2| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Nasonia vitripennis]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 154/238 (64%), Gaps = 18/238 (7%)

Query: 2   RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP 61
            ++ +K EAL  IKK+KK R K+F+  ++AQ FA +G      S+L  P +         
Sbjct: 33  HIYRDKLEALKVIKKHKKGRLKTFKTLEEAQEFARNGL----ESVLVNPLA--------- 79

Query: 62  SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT 121
           +++P++  +   EK S FK+ K Q L + RK+IE G++ +VRK +WDNPRYL+ SGD P 
Sbjct: 80  NSVPKI--VVTEEKSSNFKAPKPQNLTQFRKIIEYGDIENVRKTIWDNPRYLIGSGDTPA 137

Query: 122 ILHEGCRYNALHVSTKAV-NPAMTEMLLEIIGNPAFTNLLY-DSD-TPSYIERSDILLDL 178
           ILHEGCRYNALH++ K+  +P M E++L  +G+PAF  L Y D+D   +Y++R+ IL DL
Sbjct: 138 ILHEGCRYNALHIAVKSTQSPQMCELILNTVGDPAFVKLFYGDADEMRTYVDRASILQDL 197

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
           Y+NTPDK LNETPLHFA KFG  +CV+ L+   +   +  NK  +TP D+     S+D
Sbjct: 198 YLNTPDKGLNETPLHFATKFGLKDCVRTLLSYQQCLKTPLNKYHQTPGDIICSRKSMD 255

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414585|ref|XP_003490361.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Bombus impatiens]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/230 (43%), Positives = 140/230 (60%), Gaps = 21/230 (9%)

Query: 2   RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHG---SCGVNTSLLEAPASPSTVTA 58
           RV+ +K EAL  IK+ K  R KSF+   +A+ +A  G   S  VN++L+ A         
Sbjct: 46  RVYQDKAEALKVIKEFKTGRLKSFKKRSEAEEYAQTGFEKSNYVNSTLINA--------- 96

Query: 59  ADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD 118
                +P V      EK + FK+ +SQ+L+  +KLI+ G+L  V+  VW NPRYL+ SGD
Sbjct: 97  ----TVPVVE-----EKSNNFKAPRSQDLICFKKLIKDGDLYAVKTTVWGNPRYLIGSGD 147

Query: 119 FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL 178
            P IL EGCRYNALH++ +A  P M E++L  +GN  F  LLY  +  SY++R+ I+LDL
Sbjct: 148 TPAILQEGCRYNALHIAVRADRPDMCELILNTVGNTDFIKLLYGDECKSYVDRAQIMLDL 207

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           Y+NTPDK LNETPLHFA KFG    V+ L+       ++ NK  + P+D+
Sbjct: 208 YLNTPDKGLNETPLHFAVKFGLKNVVRILVSYPCCIKTLPNKYKQLPIDI 257

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715082|ref|XP_003396049.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Bombus terrestris]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/230 (43%), Positives = 138/230 (60%), Gaps = 21/230 (9%)

Query: 2   RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHG---SCGVNTSLLEAPASPSTVTA 58
           RV+ +K EAL  IK+ K  R KSF+   +A+ +A  G   S  VN++L+  P  P     
Sbjct: 46  RVYQDKAEALKIIKEFKTGRLKSFKKRSEAEEYAQSGFEKSNYVNSTLIN-PTVP----- 99

Query: 59  ADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD 118
                          EK + FK+ +SQ+L+  +KLI+ G+L  V+  VW NPRYL+ SGD
Sbjct: 100 ------------VVEEKSNNFKAPRSQDLICFKKLIKDGDLYAVKTTVWGNPRYLIGSGD 147

Query: 119 FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL 178
            P IL EGCRYNALH++ +A  P M E++L  +GN  F  LLY  +  SY++R+ I+LDL
Sbjct: 148 TPAILQEGCRYNALHIAVRADRPDMCELILNTVGNTDFIKLLYGDECKSYVDRAQIMLDL 207

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           Y+NTPDK LNETPLHFA KFG    V+ L+       ++ NK  + P+D+
Sbjct: 208 YLNTPDKGLNETPLHFAVKFGLKNVVRILVSYPCCIRTLPNKYKQLPIDI 257

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614607|gb|EHJ69171.1| hypothetical protein KGM_15711 [Danaus plexippus]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 132/228 (57%), Gaps = 21/228 (9%)

Query: 2   RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP 61
            V+ +K EAL   ++ K  RFK+FRN QDA +FA  G            A P      + 
Sbjct: 528 HVYTDKLEALELFRRYKSARFKAFRNRQDAMSFALRG------------AEPIDNHEGNG 575

Query: 62  SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT 121
           +++         EKP PFK+   Q++V LRK IE G +  VR  +WDNPRYLVSSG  P 
Sbjct: 576 NSI-------MGEKPYPFKAPSPQDMVTLRKAIEAGKVTVVRDRIWDNPRYLVSSGSTPA 628

Query: 122 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY--DSDTPSYIERSDILLDLY 179
           I+ EG RYNALH++ KA+N  +  ++L  +GNPAF   LY  ++D  S  E + ILLD Y
Sbjct: 629 IVQEGSRYNALHIAAKALNAEICNLILTTVGNPAFVQTLYGMETDYESCKEFATILLDRY 688

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
           +NTPDKA+NETPLHFAAKFG  E V  L    +     +NK G+   D
Sbjct: 689 LNTPDKAMNETPLHFAAKFGGDEVVDVLTSFPQCNKMAKNKYGEMAKD 736

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198922|gb|EFN79674.1| Ankyrin repeat and LEM domain-containing protein 2 [Harpegnathos saltator]

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 138/229 (60%), Gaps = 17/229 (7%)

Query: 1   ERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAAD 60
           E ++ +  +AL  IK++KK R K+F+N  DA+ +A  G                 + +  
Sbjct: 40  EHIYQDLPDALEVIKEHKKARLKTFKNRSDAEVYAKTGH----------------IQSYS 83

Query: 61  PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP 120
             +    +     E  S FK+ K QELV  RKLIE GN+ +VR +VW NPRYL+S+GD P
Sbjct: 84  SQSTSTTTVAPTQEICSNFKAPKPQELVTFRKLIESGNIENVRSIVWANPRYLISNGDTP 143

Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-DSDTPSYIERSDILLDLY 179
            IL  G RYNA+H++ KA  P M E +L+ +GNP F  L Y D++  SY++   I+LDLY
Sbjct: 144 AILQLGSRYNAIHIAVKANKPDMCEFILKTVGNPTFIQLHYGDNECKSYLDPVQIILDLY 203

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           +NTPDK LNETPLHFA K+G  + V+ L+  ++   ++RNK  + P+D+
Sbjct: 204 LNTPDKGLNETPLHFAVKYGYKDIVRILVSYSQCIKTLRNKYEQQPIDI 252

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194674594|ref|XP_591880.4| PREDICTED: ankyrin repeat and LEM domain-containing protein 2 [Bos taurus] gi|297484666|ref|XP_002694494.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2 [Bos taurus] gi|296478656|tpg|DAA20771.1| TPA: hypothetical protein BOS_16428 [Bos taurus]

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 144/233 (61%), Gaps = 9/233 (3%)

Query: 3   VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTSLLEAPASPSTVT 57
           V+++K+EAL  +K NK  RFK+F N +DA+ FA  GSC        TSL  +P   + + 
Sbjct: 225 VYEDKKEALQAVKMNKGSRFKAFTNREDAEKFA-RGSCDYFPSPSKTSLPLSPVKTAPLF 283

Query: 58  AADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSS 116
           + D   L + S  A+ E+ + +K+ ++Q+L  KLRK +EKG+      L+W NPRYL+ S
Sbjct: 284 SNDGLYLSE-SETASKERANSYKNPRTQDLTAKLRKAVEKGDEDTFSDLIWSNPRYLIGS 342

Query: 117 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RSDIL 175
           GD PTI+ EGCRYN +HV+ K    A+ ++ LE + NP F  L+Y  D P  +E R   +
Sbjct: 343 GDNPTIVQEGCRYNVMHVAAKENQAAVCQLTLETLENPEFMRLMYPDDEPHMLEKRICYV 402

Query: 176 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           +DLY+NTPD+A  +TPLHFA KFG+V+ V  L     I  + RNK  KTP DV
Sbjct: 403 VDLYLNTPDRAGYDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNKYDKTPEDV 455

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|187608335|ref|NP_001119867.1| ankyrin repeat and LEM domain-containing protein 2 [Danio rerio] gi|190339906|gb|AAI63479.1| Ankle2 protein [Danio rerio]

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/238 (41%), Positives = 144/238 (60%), Gaps = 10/238 (4%)

Query: 3   VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLEAPASPSTVT 57
           V+ +K+EAL  +K  K  RFK+F N +DA+ FA     Y+ S   +T  + +P  P  V 
Sbjct: 147 VYTDKKEALQAVKMMKGARFKAFSNREDAEKFAKGICDYYPSPSKSTPCV-SPVKPGLVF 205

Query: 58  AADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSS 116
           + D  ++ +  ++   EK + FKS ++Q+L  KLRK +EKG+     +LVW NPRYL+ S
Sbjct: 206 SKDHPSMIEADTINR-EKANSFKSPRTQDLTAKLRKAVEKGDELGFTELVWSNPRYLIGS 264

Query: 117 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RSDIL 175
           GD PT++ EGCRYN +HV+ K   P + ++LL+ + NP F  L+Y  D  S ++ R   +
Sbjct: 265 GDNPTVVQEGCRYNVMHVAAKENQPGIVQILLDTLENPEFMRLMYPDDLESMLQKRIRYI 324

Query: 176 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV-CFKM 232
           +DLY+NTPDKA  ETPLHFA KFG  E V  L     I  + +NK  + P +V C +M
Sbjct: 325 VDLYLNTPDKAGFETPLHFACKFGCPEVVNILCSHPDIDKNCKNKYNQKPCEVICERM 382

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157131979|ref|XP_001662390.1| hypothetical protein AaeL_AAEL012290 [Aedes aegypti] gi|108871330|gb|EAT35555.1| AAEL012290-PA [Aedes aegypti]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 136/225 (60%), Gaps = 15/225 (6%)

Query: 4   FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 63
           +++KEEAL  +K +K+ R K+FR  ++A  F  +G           P+ P   TA  P +
Sbjct: 21  YNDKEEALKVLKSHKEARLKAFRTSEEAVYFYLNG-----------PSDPVPSTA--PKS 67

Query: 64  LPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL 123
               +S    EK +PFK+ KSQELV  RK IEK  L  VR +V  NPRYLVSSGD PTIL
Sbjct: 68  PTSTTSKLKLEK-TPFKAPKSQELVAFRKNIEKNELDMVRNIVQLNPRYLVSSGDTPTIL 126

Query: 124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTP 183
            EG RYNALHV+    N  M  ++L+ I NP+F   L+    PS  E S ILLDLY+N P
Sbjct: 127 KEGPRYNALHVAAIEGNTDMCRLVLQTIENPSFIEFLHGQRNPSTDEVSAILLDLYLNMP 186

Query: 184 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           DK  +ETPLHFAAKFGSV  V+ LI   + + + +N +G  P D+
Sbjct: 187 DKCRSETPLHFAAKFGSVGVVEVLISYPQCKMT-KNCDGHLPKDI 230

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138509|ref|XP_001664231.1| hypothetical protein AaeL_AAEL014011 [Aedes aegypti] gi|108869492|gb|EAT33717.1| AAEL014011-PA, partial [Aedes aegypti]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/225 (46%), Positives = 136/225 (60%), Gaps = 15/225 (6%)

Query: 4   FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 63
           +++KEEAL  +K +K+ R K+FR  ++A  F  +G           P+ P   TA  P +
Sbjct: 5   YNDKEEALKVLKSHKEARLKAFRTSEEAVYFYLNG-----------PSDPVPSTA--PKS 51

Query: 64  LPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL 123
               +S    EK +PFK+ KSQELV  RK IEK  L  VR +V  NPRYLVSSGD PTIL
Sbjct: 52  PTSTTSKLKLEK-TPFKAPKSQELVAFRKNIEKNELDMVRNIVQLNPRYLVSSGDTPTIL 110

Query: 124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTP 183
            EG RYNALHV+    N  M  ++L+ I NP+F   L+    PS  E S ILLDLY+N P
Sbjct: 111 KEGPRYNALHVAAIEGNTDMCRLVLQTIENPSFIEFLHGQRNPSTDEVSAILLDLYLNMP 170

Query: 184 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           DK  +ETPLHFAAKFGSV  V+ LI   + + + +N +G  P D+
Sbjct: 171 DKCRSETPLHFAAKFGSVGVVEVLISYPQCKMT-KNCDGHLPKDI 214

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
UNIPROTKB|E1BFD1	967	ANKLE2 "Uncharacterized protei	0.563	0.232	0.432	3.6e-43
UNIPROTKB|F1NY55	979	ANKLE2 "Uncharacterized protei	0.604	0.246	0.393	2e-41
RGD|1310191	964	Ankle2 "ankyrin repeat and LEM	0.563	0.233	0.405	1.2e-37
UNIPROTKB|F5H2H5	876	ANKLE2 "Ankyrin repeat and LEM	0.561	0.255	0.400	3.2e-37
ZFIN|ZDB-GENE-091118-26	682	zdhhc8a "zinc finger, DHHC-typ	0.523	0.306	0.412	3.6e-37
UNIPROTKB|Q86XL3	938	ANKLE2 "Ankyrin repeat and LEM	0.561	0.238	0.400	3.9e-37
MGI|MGI:1261856	964	Ankle2 "ankyrin repeat and LEM	0.563	0.233	0.405	4.1e-37
UNIPROTKB|E2R7S4	959	ANKLE2 "Uncharacterized protei	0.563	0.234	0.402	1.4e-36
UNIPROTKB|F5H417	251	ANKLE2 "Ankyrin repeat and LEM	0.523	0.832	0.396	1.3e-34
FB|FBgn0028343	1174	l(1)G0222 "lethal (1) G0222" [	0.411	0.139	0.423	2.2e-28

UNIPROTKB|E1BFD1 ANKLE2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 450 (163.5 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
 Identities = 102/236 (43%), Positives = 140/236 (59%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLEAPASP-STVTAA 59
             V+++K+EAL  +K NK  RFK+F N +DA+ FA  GSC    + S    P SP  T    
Sbjct:   225 VYEDKKEALQAVKMNKGSRFKAFTNREDAEKFA-RGSCDYFPSPSKTSLPLSPVKTAPLF 283

Query:    60 DPSALPQ-----VSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYL 113
                 L        S  A+ E+ + +K+ ++Q+L  KLRK +EKG+      L+W NPRYL
Sbjct:   284 SNGGLKDGLYLSESETASKERANSYKNPRTQDLTAKLRKAVEKGDEDTFSDLIWSNPRYL 343

Query:   114 VSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RS 172
             + SGD PTI+ EGCRYN +HV+ K    A+ ++ LE + NP F  L+Y  D P  +E R 
Sbjct:   344 IGSGDNPTIVQEGCRYNVMHVAAKENQAAVCQLTLETLENPEFMRLMYPDDEPHMLEKRI 403

Query:   173 DILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
               ++DLY+NTPD+A  +TPLHFA KFG+V+ V  L     I  + RNK  KTP DV
Sbjct:   404 CYVVDLYLNTPDRAGYDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNKYDKTPEDV 459

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

UNIPROTKB|F1NY55 ANKLE2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 100/254 (39%), Positives = 149/254 (58%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTSLLEAPASPSTVT 57
             V+++++EAL  +K  K  RFK+F N +DA+ FA  G C        +SL  +P    ++ 
Sbjct:   230 VYEDRKEALQAVKMIKGSRFKAFSNREDAEKFA-KGICDYFPSPSKSSLCLSPMKTGSLN 288

Query:    58 AADPSALPQVSSL----AAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
              AD      + SL    A  E+ + +KS ++Q+L  KLRK +EKG+++   +L+W NPRY
Sbjct:   289 RADAIYSDGLCSLEMETANKERANSYKSPRTQDLTAKLRKAVEKGDISTFSELIWSNPRY 348

Query:   113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-DSDTPSYIER 171
             L+ SGD PT++ EGCRYN +HV+ K   PA+ ++LL+ + NP F  L+Y D D      R
Sbjct:   349 LIGSGDNPTVVQEGCRYNVMHVAAKENQPAVCQLLLDTLENPEFMRLMYPDDDNTMLRNR 408

Query:   172 SDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK 231
                ++DLY+NTPDK   +TPLHFA KFG+++ V  L     I  + RNK  +TP +V  +
Sbjct:   409 IRYIVDLYLNTPDKMGFDTPLHFACKFGNLDVVNVLTSHPAIVKNPRNKYDQTPAEVVCE 468

Query:   232 MPSVDSMGPLSTKL 245
               S +    L  KL
Sbjct:   469 R-SKNKSAELKEKL 481

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

RGD|1310191 Ankle2 "ankyrin repeat and LEM domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 414 (150.8 bits), Expect = 1.2e-37, P = 1.2e-37
 Identities = 96/237 (40%), Positives = 137/237 (57%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLEA----PASP 53
             V+++K+EAL  +K  K  RFK+F   +DA+ FA     Y  S   N SLL      P   
Sbjct:   226 VYEDKKEALQAVKLIKGSRFKAFPTREDAEKFARGICDYLPSPSKNMSLLSPVKAMPLCS 285

Query:    54 STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
             +    AD   L + S     E+ + +K+ ++Q+L  KLRK +E+G       L+W NPRY
Sbjct:   286 NDGPKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVERGEEHTFSDLIWSNPRY 344

Query:   113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERS 172
             L+ SGD PTI+ EGCRYN +HV+ K    ++ ++ LE + NP F  L+Y  D    +++ 
Sbjct:   345 LIGSGDNPTIVQEGCRYNVMHVAAKENQASVCQLTLETLENPEFMRLMYPDDNMDMLQKR 404

Query:   173 DI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
              + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + RNK GKTP DV
Sbjct:   405 ILYIVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNKYGKTPEDV 461

GO:0005737 "cytoplasm" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=ISO;ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0035307 "positive regulation of protein dephosphorylation" evidence=ISO;ISS

GO:0042326 "negative regulation of phosphorylation" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=ISO;ISS

UNIPROTKB|F5H2H5 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.2e-37, P = 3.2e-37
 Identities = 95/237 (40%), Positives = 135/237 (56%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLEAPASP------- 53
             V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C    + S    P SP       
Sbjct:   156 VYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTSLPLSPVKTAPLF 214

Query:    54 STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
             S     D   L + S     E+ + +K+ ++Q+L  KLRK +EKG       L+W NPRY
Sbjct:   215 SNDRLKDGLCLSE-SETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDTFSDLIWSNPRY 273

Query:   113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-R 171
             L+ SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+Y  D  + ++ R
Sbjct:   274 LIGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLMYPDDDEAMLQKR 333

Query:   172 SDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
                ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RNK  KTP DV
Sbjct:   334 IRYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNKYDKTPEDV 390

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-091118-26 zdhhc8a "zinc finger, DHHC-type containing 8a" [Danio rerio (taxid:7955)]

 Score = 405 (147.6 bits), Expect = 3.6e-37, P = 3.6e-37
 Identities = 94/228 (41%), Positives = 128/228 (56%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPS 62
             VF ++ + L  + K K  RFK+F +  +A+NFA  G CG   S    P  PST +  D  
Sbjct:   113 VFVDQTKVLKAVMKLKDARFKAFASRAEAENFA-KGLCGGRVS----PEKPSTASVTD-- 165

Query:    63 ALPQVSSLAAAEKPSPFKSLKSQELVK-LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT 121
                        EK + F+S ++Q+L   LR+ +E G+    R+LVW NPR+L+ SGD PT
Sbjct:   166 ----------VEKANEFRSPRTQDLTATLRRTVETGDQQAFRELVWTNPRFLIGSGDNPT 215

Query:   122 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI-ERSDILLDLYV 180
             +L EGCRYN LHV+ K     M  +LLE + +P F  L+Y  D  + + +R   ++DLY+
Sbjct:   216 VLQEGCRYNVLHVAAKENQAGMARLLLETLEDPEFMKLMYPQDQENMLSQRIRYIVDLYL 275

Query:   181 NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
             NTPD+A NETPLHFA KFG  E V  L     I    RNK  + P  V
Sbjct:   276 NTPDRASNETPLHFACKFGCPEVVNVLCSHPFIDKHCRNKYDQQPSSV 323

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q86XL3 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 95/237 (40%), Positives = 135/237 (56%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLEAPASP------- 53
             V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C    + S    P SP       
Sbjct:   218 VYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTSLPLSPVKTAPLF 276

Query:    54 STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
             S     D   L + S     E+ + +K+ ++Q+L  KLRK +EKG       L+W NPRY
Sbjct:   277 SNDRLKDGLCLSE-SETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDTFSDLIWSNPRY 335

Query:   113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-R 171
             L+ SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+Y  D  + ++ R
Sbjct:   336 LIGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLMYPDDDEAMLQKR 395

Query:   172 SDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
                ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RNK  KTP DV
Sbjct:   396 IRYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNKYDKTPEDV 452

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=TAS

GO:0051721 "protein phosphatase 2A binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1261856 Ankle2 "ankyrin repeat and LEM domain containing 2" [Mus musculus (taxid:10090)]

 Score = 409 (149.0 bits), Expect = 4.1e-37, P = 4.1e-37
 Identities = 96/237 (40%), Positives = 135/237 (56%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLE----APASP 53
             V+++K+EAL   K  K  RFK+FR  +DA+ FA     Y  S    T LL      P   
Sbjct:   225 VYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAVPLGG 284

Query:    54 STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRY 112
             S    AD   L + S     E+ + +K+ ++Q+L  KLRK +E G       L+W NPRY
Sbjct:   285 SDGLKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSNPRY 343

Query:   113 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERS 172
             L+ SGD PTI+ EGCRYN +HV+ K    +M ++ LE + NP F  L+Y  D    +++ 
Sbjct:   344 LIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDMLQKR 403

Query:   173 DI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
              + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + +NK GKTP +V
Sbjct:   404 ILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTPEEV 460

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0035307 "positive regulation of protein dephosphorylation" evidence=ISO

GO:0042326 "negative regulation of phosphorylation" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=ISO

UNIPROTKB|E2R7S4 ANKLE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 404 (147.3 bits), Expect = 1.4e-36, P = 1.4e-36
 Identities = 95/236 (40%), Positives = 136/236 (57%)

Query:     3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEA--PASPSTVTAAD 60
             V++++++AL  +K  K  RFK+F   +DA+ FA  G C    S  +A  P SP  V    
Sbjct:   223 VYEDRKDALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKASLPLSPVKVAPLF 281

Query:    61 PSA-LPQVSSLAAAE-----KPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYL 113
              S  L     L+ +E     + + +K+ ++Q+L  KLRK +EKG       L W NPRYL
Sbjct:   282 SSGGLKDGLYLSESETVNRERANSYKTPRTQDLTAKLRKAVEKGEDDTFSNLTWSNPRYL 341

Query:   114 VSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RS 172
             + SGD PTI+ EGCRYN +HV+ K    ++ ++ LE + NP F  L+Y  D P+ ++ R 
Sbjct:   342 IGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLETLENPEFMRLMYPDDDPNMLQQRI 401

Query:   173 DILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
               ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RNK  KTP DV
Sbjct:   402 CYIVDLYLNTPDKVGYDTPLHFACKFGNADVVNVLSSHPLIVKNPRNKYDKTPEDV 457

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

UNIPROTKB|F5H417 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 88/222 (39%), Positives = 124/222 (55%)

Query:    18 KKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLEAPASP-------STVTAADPSALPQVS 68
             K  RFK+F   +DA+ FA  G C    + S    P SP       S     D   L + S
Sbjct:     3 KGSRFKAFSTREDAEKFA-RGICDYFPSPSKTSLPLSPVKTAPLFSNDRLKDGLCLSE-S 60

Query:    69 SLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGC 127
                  E+ + +K+ ++Q+L  KLRK +EKG       L+W NPRYL+ SGD PTI+ EGC
Sbjct:    61 ETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDTFSDLIWSNPRYLIGSGDNPTIVQEGC 120

Query:   128 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKA 186
             RYN +HV+ K    ++ ++ L+++ NP F  L+Y  D  + ++ R   ++DLY+NTPDK 
Sbjct:   121 RYNVMHVAAKENQASICQLTLDVLENPDFMRLMYPDDDEAMLQKRIRYVVDLYLNTPDKM 180

Query:   187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
               +TPLHFA KFG+ + V  L     I  + RNK  KTP DV
Sbjct:   181 GYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNKYDKTPEDV 222

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0028343 l(1)G0222 "lethal (1) G0222" [Drosophila melanogaster (taxid:7227)]

 Score = 329 (120.9 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 72/170 (42%), Positives = 105/170 (61%)

Query:    65 PQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH 124
             PQ   ++  E P PF++   QELV+ RK IE G++  V++++W+NPR+L+SSGD PT L 
Sbjct:   216 PQQPDVSG-EGP-PFRAPTKQELVEFRKQIEGGHIDRVKRIIWENPRFLISSGDTPTSLK 273

Query:   125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD-TPSYIERSDI-LLDLYVNT 182
             EGCRYNA+H+  +     + ++LL+ I +  FT L      +       +I LLD Y+N 
Sbjct:   274 EGCRYNAMHICAQVNKARIAQLLLKTISDREFTQLYVGKKGSGKMCAALNISLLDYYLNM 333

Query:   183 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV-CFK 231
             PDK   ETPLHFAAK G V  V+ L+   + + S+RN EGK P ++ C +
Sbjct:   334 PDKGRGETPLHFAAKNGHVAMVEVLVSYPECK-SLRNHEGKEPKEIICLR 382

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	399
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--Y 179
              LH++    +  + ++LLE   +    +   D  TP        ++E   +LL+    
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
           VN  DK    TPLH AA+ G+++ VK L+       + R+K+G+TPL + 
Sbjct: 66  VNARDK-DGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 94  IEKGNLADVRKLVWDNPRYLVSSGDFPTIL-HEGCRYNALHVSTKAVNPAMTEMLLEIIG 152
              G+L  V+         L+ +G       ++G     LH++ K  +  + ++LLE   
Sbjct: 15  ASNGHLEVVK--------LLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 153 NPAFTNLLYDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVEC 203
           +    +   D +TP         ++   +LL     VN  DK    TPLH AAK G +E 
Sbjct: 65  DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD-GRTPLHLAAKNGHLEV 121

Query: 204 VKRLI 208
           VK L+
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 227
           +N  D   N TPLH AAK+G++E V+ L+    +  ++R+ +G T LD
Sbjct: 9   LNATDGNGN-TPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 188 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDVC 229
            +T LH AA+ G++E VK L+   A +    ++K+G T L + 
Sbjct: 28  TDTALHLAARNGNLEIVKLLLEHGADVNA--KDKDGNTALHLA 68

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 36/104 (34%)

Query: 114 VSSGDFPTI---LHEGCRYN------ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 164
             +G+   +   L +G   N      ALH++ +  N  + ++LLE           + +D
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE-----------HGAD 53

Query: 165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
                          VN  DK    T LH AA+ G++E VK L+
Sbjct: 54  ---------------VNAKDK-DGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
           T LH AA  G +E VK L+    +  +  +++G T L +  +  +++
Sbjct: 3   TALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLE 48

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 189 ETPLHFAAKFGSVECVKRLI 208
            TPLH AA+ G +E VK L+
Sbjct: 3   NTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG4412|consensus	226		99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.96
KOG4412|consensus	226		99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
KOG0509|consensus	600		99.94
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02946	446	ankyin-like protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.9
KOG0510|consensus	929		99.9
KOG0509|consensus	600		99.9
KOG0510|consensus	929		99.9
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.88
KOG4177|consensus	1143		99.88
KOG0508|consensus	615		99.87
KOG0508|consensus	615		99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02917	661	ankyrin-like protein; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0502|consensus	296		99.81
PHA02795	437	ankyrin-like protein; Provisional	99.81
PHA02792	631	ankyrin-like protein; Provisional	99.8
KOG0512|consensus	228		99.79
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.78
KOG0505|consensus	527		99.78
KOG0507|consensus	854		99.78
KOG0514|consensus	452		99.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
KOG0507|consensus	854		99.77
KOG0512|consensus	228		99.76
KOG4177|consensus	1143		99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG0195|consensus	448		99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.74
KOG0195|consensus	448		99.74
KOG0502|consensus	296		99.73
KOG0514|consensus	452		99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PHA02741	169	hypothetical protein; Provisional	99.69
KOG0505|consensus	527		99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG4214|consensus	117		99.63
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.62
PHA02884	300	ankyrin repeat protein; Provisional	99.61
PHA02736	154	Viral ankyrin protein; Provisional	99.61
KOG4369|consensus	2131		99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
PHA02792	631	ankyrin-like protein; Provisional	99.59
KOG3676|consensus	782		99.56
KOG3676|consensus	782		99.56
KOG0515|consensus	752		99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
KOG1710|consensus	396		99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.4
KOG4214|consensus	117		99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
KOG4369|consensus	2131		99.26
KOG0515|consensus	752		99.22
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.22
KOG1710|consensus	396		99.2
KOG0818|consensus	669		99.01
KOG0782|consensus	1004		98.97
KOG0783|consensus	1267		98.97
KOG0506|consensus	622		98.82
PF13606	30	Ank_3: Ankyrin repeat	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
KOG0522|consensus	560		98.72
KOG0705|consensus	749		98.71
KOG0818|consensus	669		98.66
PF13606	30	Ank_3: Ankyrin repeat	98.6
KOG0705|consensus	749		98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.53
KOG0506|consensus	622		98.52
KOG0783|consensus	1267		98.49
KOG2384|consensus	223		98.42
KOG0522|consensus	560		98.31
KOG0520|consensus	975		98.24
KOG0782|consensus	1004		98.18
KOG0521|consensus	785		98.12
KOG3609|consensus	822		98.02
KOG0511|consensus	516		97.93
KOG0511|consensus	516		97.89
KOG2384|consensus	223		97.86
KOG0521|consensus	785		97.69
KOG0520|consensus	975		97.56
KOG3609|consensus	822		97.55
KOG2505|consensus	591		96.98
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.98
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.6
KOG2505|consensus	591		94.43
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.18
PF01693	44	Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR0	89.56
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.58
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.34
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	81.29
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.38

>KOG4412|consensus

Probab=99.97  E-value=1e-30  Score=218.69  Aligned_cols=176  Identities=20%  Similarity=0.255  Sum_probs=152.3

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhh-CCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCCCcccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVS-SGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLL  160 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~-~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~-ga~~~~~~l~  160 (399)
                      +.+++|||||||..|+.++|.        +|+. .+..++- +|..||||||+||..|+.++|+.|+.+ |++       
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~--------fLlsq~nv~~dd-kDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-------   98 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVY--------FLLSQPNVKPDD-KDDAGWTPLHIAASNGNDEVVKELLNRSGAD-------   98 (226)
T ss_pred             cccCCceeeeeeecCchhHHH--------HHHhcCCCCCCC-ccccCCchhhhhhhcCcHHHHHHHhcCCCCC-------
Confidence            568999999999999999999        6764 4444554 466899999999999999999999988 666       


Q ss_pred             ccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHH
Q psy1036         161 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGP  240 (399)
Q Consensus       161 ~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~  240 (399)
                                         +|..++ .|.||||||+..|+.+|+++|++.| +.++++|..|+||||-|+.-|+.+++++
T Consensus        99 -------------------vna~tn-~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~  157 (226)
T KOG4412|consen   99 -------------------VNATTN-GGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEY  157 (226)
T ss_pred             -------------------cceecC-CCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHH
Confidence                               899988 7999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCC
Q psy1036         241 LSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAAD  320 (399)
Q Consensus       241 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~  320 (399)
                      |+....+.                                                                        
T Consensus       158 Li~~~a~~------------------------------------------------------------------------  165 (226)
T KOG4412|consen  158 LISQGAPL------------------------------------------------------------------------  165 (226)
T ss_pred             HHhcCCCC------------------------------------------------------------------------
Confidence            98653211                                                                        


Q ss_pred             CCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhh
Q psy1036         321 PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVC  387 (399)
Q Consensus       321 ~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~  387 (399)
                                         +.-..++.||||.|+-.||.++--.||..+|++.+-...+ |.|..|+
T Consensus       166 -------------------n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  166 -------------------NTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             -------------------CcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence                               1112466799999999999999999999999999998888 8888775

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=245.36  Aligned_cols=277  Identities=12%  Similarity=0.086  Sum_probs=194.3

Q ss_pred             hcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccC
Q psy1036          73 AEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG  152 (399)
Q Consensus        73 ~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga  152 (399)
                      .............+.||||.|++.|+.++|+        +|++.|++++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus        22 ~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~--------~Ll~~Ga~~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~   92 (434)
T PHA02874         22 KNKGNCINISVDETTTPLIDAIRSGDAKIVE--------LFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKLLIDNGV   92 (434)
T ss_pred             HcCCCCCCCcCCCCCCHHHHHHHcCCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3333334445677889999999999999999        88899998887 46679999999999999999999999998


Q ss_pred             CCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhC
Q psy1036         153 NPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKM  232 (399)
Q Consensus       153 ~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~  232 (399)
                      +.......  ... ......++..++++|.+|. .|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..
T Consensus        93 ~~~~~~~~--~~~-~~~i~~ll~~g~d~n~~~~-~g~T~Lh~A~~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874         93 DTSILPIP--CIE-KDMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             CCCcchhc--cCC-HHHHHHHHHCcCCCCCCCC-CCccHHHHHHHCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHC
Confidence            85433211  111 1122455667888999998 6999999999999999999999999 89999999999999999999


Q ss_pred             CCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCC
Q psy1036         233 PSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPAS  312 (399)
Q Consensus       233 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~  312 (399)
                      |+.+++++|++.+.........+.+....++.....+.++.+... ++.+....                  .-..+|+.
T Consensus       168 ~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~------------------~~g~TpL~  228 (434)
T PHA02874        168 NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKC------------------KNGFTPLH  228 (434)
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCC------------------CCCCCHHH
Confidence            999999999998755444333333322222222333333333221 11111000                  00011111


Q ss_pred             CCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhc-CHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         313 PSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       313 ~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G-~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      ..-.    .+ ...+.-+ .  .+......+..+.||||.|++.| +.++|+.|+..|+++++.+.+|.|+||.|++..
T Consensus       229 ~A~~----~~-~~~i~~L-l--~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        229 NAII----HN-RSAIELL-I--NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHH----CC-hHHHHHH-H--cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            0000    00 0111111 1  12334455667889999999976 899999999999999999999999999999765

>KOG4412|consensus

Probab=99.96  E-value=8e-29  Score=207.40  Aligned_cols=180  Identities=20%  Similarity=0.165  Sum_probs=152.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      .++.+.+|.......|++++...|+.|.-.       .|..|+|||||||..|+.+|+++|++. .+             
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r-------~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~n-------------   62 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNAR-------DDQDGRTPLHWACSFGHVEIVYFLLSQ-PN-------------   62 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhcc-------ccccCCceeeeeeecCchhHHHHHHhc-CC-------------
Confidence            357888999999999998888877444332       355689999999999999999999963 22             


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                                 ..+|..|. .||||||+||..|+.++|+.|+.+..+|+|..++.|+||||||+..|+.+|+++|++++.
T Consensus        63 -----------v~~ddkDd-aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga  130 (226)
T KOG4412|consen   63 -----------VKPDDKDD-AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA  130 (226)
T ss_pred             -----------CCCCCccc-cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCC
Confidence                       23678887 699999999999999999999999339999999999999999999999999999997641


Q ss_pred             chhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcc
Q psy1036         247 PTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQ  326 (399)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~  326 (399)
                      .                                                                               
T Consensus       131 ~-------------------------------------------------------------------------------  131 (226)
T KOG4412|consen  131 L-------------------------------------------------------------------------------  131 (226)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccccC
Q psy1036         327 VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSG  392 (399)
Q Consensus       327 ~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~~  392 (399)
                                  ......++.||||+|+-.|.+.+|+.|++.++.+|.|..-|.|+||-|  ||.+
T Consensus       132 ------------i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a--l~e~  183 (226)
T KOG4412|consen  132 ------------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA--LAEG  183 (226)
T ss_pred             ------------CcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH--Hhcc
Confidence                        001123667999999999999999999999999999999999999999  6654

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=6.1e-28  Score=241.56  Aligned_cols=291  Identities=11%  Similarity=0.018  Sum_probs=194.7

Q ss_pred             chhhhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcC--CHHHHH
Q psy1036          68 SSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTE  145 (399)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g--~~~iv~  145 (399)
                      .+.+.... ......+..|.||||+||..|+.++|+        +|+++|++++. +|..|+||||+|+..+  ..++++
T Consensus        55 v~~Ll~~G-advn~~d~~G~TpLh~Aa~~g~~eiv~--------lLL~~GAdin~-~d~~g~TpLh~A~~~~~~~~e~v~  124 (446)
T PHA02946         55 VEELLHRG-YSPNETDDDGNYPLHIASKINNNRIVA--------MLLTHGADPNA-CDKQHKTPLYYLSGTDDEVIERIN  124 (446)
T ss_pred             HHHHHHCc-CCCCccCCCCCCHHHHHHHcCCHHHHH--------HHHHCcCCCCC-CCCCCCCHHHHHHHcCCchHHHHH
Confidence            34444333 344566788999999999999999999        88899999987 5778999999999876  489999


Q ss_pred             HHHhccCCCC-------CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcc
Q psy1036         146 MLLEIIGNPA-------FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG--SVECVKRLIGCAKIQTS  216 (399)
Q Consensus       146 ~Ll~~ga~~~-------~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g--~~~iv~~LL~~g~a~~~  216 (399)
                      +|+++|++.+       .++++.+.........+++..+++++..|. .|+||||+|+..+  +.+++++|+++| ++++
T Consensus       125 lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin  202 (446)
T PHA02946        125 LLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLG-ISPS  202 (446)
T ss_pred             HHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCc
Confidence            9999998744       345553333222333566678889999999 6999999998765  468999999999 9999


Q ss_pred             cCCCCCCcHHHHHHhCC--CHHHHHHHHhccCchhhcccCCCCccchhhhhch---HHHHHHHHHhhccccc-------c
Q psy1036         217 VRNKEGKTPLDVCFKMP--SVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNK---EEALLFIKKNKKIRFK-------S  284 (399)
Q Consensus       217 ~~d~~G~TpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~k~~r~~-------~  284 (399)
                      .+|.+|+||||+|+.++  +.++++.|++ ..  .+..++......+++....   .+..+.+... ++...       .
T Consensus       203 ~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga--din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~-g~~~~~~~~~~a~  278 (446)
T PHA02946        203 KPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST--DVNKQNKFGDSPLTLLIKTLSPAHLINKLLST-SNVITDQTVNICI  278 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC--CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC-CCCCCCcHHHHHH
Confidence            99999999999999986  7889998885 32  2333332333334433322   2233333222 11110       0


Q ss_pred             ccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHH
Q psy1036         285 FRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRK  364 (399)
Q Consensus       285 ~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~  364 (399)
                      +....+..++.....    .....||++    .++.++ ...+..+.. +.+       ..+.||||.|++.|+.++|+.
T Consensus       279 ~~~~~~~~e~l~~~g----~~~~~TpLh----~Aa~~g-~~eivk~Ll-~~~-------~~~~t~L~~A~~~~~~~~v~~  341 (446)
T PHA02946        279 FYDRDDVLEIINDKG----KQYDSTDFK----MAVEVG-SIRCVKYLL-DND-------IICEDAMYYAVLSEYETMVDY  341 (446)
T ss_pred             HcCchHHHHHHHHcC----cccCCCHHH----HHHHcC-CHHHHHHHH-HCC-------CccccHHHHHHHhCHHHHHHH
Confidence            111111111111110    011124332    222222 233333322 221       244699999999999999999


Q ss_pred             HhhcCCCeeecCCCchhHHHHhhccccC
Q psy1036         365 LVWDNPRYLVSSGDFPTILHVVCSRCSG  392 (399)
Q Consensus       365 lv~~~~~~~~~s~d~~~~l~~~~~~~~~  392 (399)
                      |++.|++++.. .+|.||||.|++..+.
T Consensus       342 Ll~~ga~~n~~-~~G~t~l~~a~~~~~~  368 (446)
T PHA02946        342 LLFNHFSVDSV-VNGHTCMSECVRLNNP  368 (446)
T ss_pred             HHHCCCCCCCc-cccccHHHHHHHcCCH
Confidence            99999999986 6899999999987653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=223.97  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=115.3

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      .+..|.||||+|+..|+.++|+        +|++.|++++..   .|+||||+|+..|+.+++++|++.|++        
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~--------~Ll~~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gad--------   86 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVC--------TLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGMD--------   86 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHH--------HHHHCcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHCCCC--------
Confidence            3677999999999999999999        888999877663   368999999999999999999999987        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCC-cHHHHHHhCCCHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK-TPLDVCFKMPSVDSMGP  240 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~-TpL~~A~~~g~~~iv~~  240 (399)
                                        +|.+|. .|+||||+|+..|+.++|++|+++| ++++.++..|+ ||||+|+..|+.+++++
T Consensus        87 ------------------vn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~g-adin~~~~~g~~TpL~~Aa~~g~~eivk~  146 (284)
T PHA02791         87 ------------------DSQFDD-KGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSY  146 (284)
T ss_pred             ------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCcHHHHHHHHcCCHHHHHH
Confidence                              788998 6999999999999999999999999 89999999985 89999999999999999


Q ss_pred             HHhcc
Q psy1036         241 LSTKL  245 (399)
Q Consensus       241 Ll~~~  245 (399)
                      |++..
T Consensus       147 LL~~~  151 (284)
T PHA02791        147 FLSEI  151 (284)
T ss_pred             HHhcC
Confidence            99875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.4e-27  Score=238.68  Aligned_cols=248  Identities=18%  Similarity=0.117  Sum_probs=186.0

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHH-----HHHcCCHHHHHHHHhccCC----
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV-----STKAVNPAMTEMLLEIIGN----  153 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~-----Aa~~g~~~iv~~Ll~~ga~----  153 (399)
                      ...+.||||.|+..|+.++|+        +|++.|++++. .+..|.||||+     |+..|+.+++++|++.|++    
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk--------~Ll~~g~~~~~-~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~  102 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVK--------ILLDNGADINS-STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP  102 (480)
T ss_pred             hcccchhhhhhhccCCHHHHH--------HHHHcCCCCCC-ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCC
Confidence            567789999999999999999        88899988887 35678999999     9999999999999999987    


Q ss_pred             --CCCccccccC--CChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCCCcHH
Q psy1036         154 --PAFTNLLYDS--DTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFG--SVECVKRLIGCAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       154 --~~~~~l~~a~--~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g--~~~iv~~LL~~g~a~~~~~d~~G~TpL  226 (399)
                        .+.+++++++  ..+.... .+++..+++++..+. .|+||||+|+..|  +.+++++|+++| ++++.+|..|+|||
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~din~~d~~g~tpL  180 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNKIDLKILKLLIDKG-VDINAKNRYGYTPL  180 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCC-CCcccccCCCCCHH
Confidence              3567888887  4443322 566677888999998 6999999999999  999999999999 89999999999999


Q ss_pred             HHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCC
Q psy1036         227 DVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSL  306 (399)
Q Consensus       227 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~  306 (399)
                      |+|+..|+.+++++|++.+.........+..  ..+.    ...+........       ...+..++.           
T Consensus       181 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~--~~~~----~t~l~~a~~~~~-------~~~~iv~~L-----------  236 (480)
T PHA03100        181 HIAVEKGNIDVIKFLLDNGADINAGDIETLL--FTIF----ETPLHIAACYNE-------ITLEVVNYL-----------  236 (480)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCccCCCCCCCc--HHHH----HhHHHHHHHhCc-------CcHHHHHHH-----------
Confidence            9999999999999999987543332221111  0000    011100000000       000111111           


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHh
Q psy1036         307 LEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVV  386 (399)
Q Consensus       307 ~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~  386 (399)
                                                .+.+.+....+..+.||||.|+..|+.++|+.|+..|+++++.+.+|.|+||.|
T Consensus       237 --------------------------l~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        237 --------------------------LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             --------------------------HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence                                      111122233445667999999999999999999999999999999999999999


Q ss_pred             hcccc
Q psy1036         387 CSRCS  391 (399)
Q Consensus       387 ~~~~~  391 (399)
                      ++.+.
T Consensus       291 ~~~~~  295 (480)
T PHA03100        291 ILNNN  295 (480)
T ss_pred             HHhCC
Confidence            97543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=239.19  Aligned_cols=235  Identities=15%  Similarity=0.105  Sum_probs=174.6

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC----ccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF----TNL  159 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~----~~l  159 (399)
                      ..+.||||+||..|+.++|+        +|++.|++++. .+..|+||||+||..|+.+++++|++.+.....    +++
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk--------~Ll~~gadvn~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l  105 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVK--------SLLTRGHNVNQ-PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAI  105 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhH
Confidence            45678999999999999999        88899999887 577899999999999999999999987654221    111


Q ss_pred             cccCCC------------------------------h--hH--HHHHHhhhccCCCCCCCCC-CchHHHHHHHcCCHHHH
Q psy1036         160 LYDSDT------------------------------P--SY--IERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECV  204 (399)
Q Consensus       160 ~~a~~~------------------------------~--~~--~~~~~~~~~~~vn~~d~~~-G~TpLh~Aa~~g~~~iv  204 (399)
                      +.++..                              .  ..  ...+++..|+++|..|. . |+||||+|+..|+.+++
T Consensus       106 ~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~-~~g~tpLh~A~~~~~~~iv  184 (477)
T PHA02878        106 KDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDR-HKGNTALHYATENKDQRLT  184 (477)
T ss_pred             HHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCC-CCCCCHHHHHHhCCCHHHH
Confidence            111000                              0  01  12556667889999998 6 99999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhcccccc
Q psy1036         205 KRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKS  284 (399)
Q Consensus       205 ~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~  284 (399)
                      ++|+++| ++++.+|..|+||||+|+..|+.++++.|++.+.........  ....+|.+.......++++.        
T Consensus       185 ~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~--g~TpLh~A~~~~~~~~iv~~--------  253 (477)
T PHA02878        185 ELLLSYG-ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC--GNTPLHISVGYCKDYDILKL--------  253 (477)
T ss_pred             HHHHHCC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC--CCCHHHHHHHhcCCHHHHHH--------
Confidence            9999999 999999999999999999999999999999987544433222  22233332211111222211        


Q ss_pred             ccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCc-hHHHHHHHHHHhhcCHHHHH
Q psy1036         285 FRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLK-SQELVKLRKLIEKGNLADVR  363 (399)
Q Consensus       285 ~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~t~l~~aiq~G~~~~v~  363 (399)
                               +...|.                                      .....+ ..+.||||.|  .++.++|+
T Consensus       254 ---------Ll~~ga--------------------------------------dvn~~~~~~g~TpLh~A--~~~~~~v~  284 (477)
T PHA02878        254 ---------LLEHGV--------------------------------------DVNAKSYILGLTALHSS--IKSERKLK  284 (477)
T ss_pred             ---------HHHcCC--------------------------------------CCCccCCCCCCCHHHHH--ccCHHHHH
Confidence                     111111                                      011111 1357999999  57889999


Q ss_pred             HHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         364 KLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       364 ~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                      .|+..|+++|+.+.+|.|+||.|++
T Consensus       285 ~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        285 LLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999987

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=1.2e-26  Score=240.41  Aligned_cols=309  Identities=11%  Similarity=0.007  Sum_probs=187.5

Q ss_pred             ccchhhhhcCCCCCCCC-CccchHHHHHHHH--cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC--
Q psy1036          66 QVSSLAAAEKPSPFKSL-KSQELVKLRKLIE--KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN--  140 (399)
Q Consensus        66 g~~~~~~~~~~~~~~~~-~~~~~T~Lh~Aa~--~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~--  140 (399)
                      .+...+........... +..|.||||.|+.  .++.++|+        +|++.|++++. ++..|+||||+|+..|+  
T Consensus       156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVk--------lLLe~GADVN~-kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILE--------WLCNNGVNVNL-QNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             HHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCCC
Confidence            34445554442334444 6678899998865  36788998        88888988887 46789999999999885  


Q ss_pred             HHHHHHHHhccCCC------CCccccccCCC------------------------------------hhHHH--HHHhhh
Q psy1036         141 PAMTEMLLEIIGNP------AFTNLLYDSDT------------------------------------PSYIE--RSDILL  176 (399)
Q Consensus       141 ~~iv~~Ll~~ga~~------~~~~l~~a~~~------------------------------------~~~~~--~~~~~~  176 (399)
                      .++|++|+++|++.      +.++++++...                                    .+...  .+++..
T Consensus       227 ~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            48999999999873      45666653210                                    01111  455667


Q ss_pred             ccCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh--------------CCCHHHHHH
Q psy1036         177 DLYVNTPDKALNETPLHFAAK--FGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK--------------MPSVDSMGP  240 (399)
Q Consensus       177 ~~~vn~~d~~~G~TpLh~Aa~--~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~--------------~g~~~iv~~  240 (399)
                      |+++|.+|. .|+||||+|+.  .++.+++++|+++| ++++.+|..|+||||+|+.              .++.+++++
T Consensus       307 GAdIN~kD~-~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        307 GVKLHYKDS-AGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             CCceeccCC-CCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            889999998 69999999864  46899999999999 9999999999999999875              368999999


Q ss_pred             HHhccCchhhcccCCCCccchhhh--hc-hHHHHHHHHHhhccccccccChHHHHHHHhcCC----------ccCCCCCC
Q psy1036         241 LSTKLTPTKVATKSEGTEEGERVF--DN-KEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGS----------CGVNTSLL  307 (399)
Q Consensus       241 Ll~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~----------~~~~~s~~  307 (399)
                      |++.+.........  ....++.|  .. .....++++.+-.............+.+.....          ..+... .
T Consensus       385 LL~~GADIn~kn~~--G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~-~  461 (764)
T PHA02716        385 LISLGADITAVNCL--GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIP-T  461 (764)
T ss_pred             HHHCCCCCCCcCCC--CCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcc-h
Confidence            99988654433333  22333322  11 112223332221110000000000000000000          000000 0


Q ss_pred             CCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHH-----HHHHhhcCCCeeecCCCchhH
Q psy1036         308 EAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLAD-----VRKLVWDNPRYLVSSGDFPTI  382 (399)
Q Consensus       308 ~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~-----v~~lv~~~~~~~~~s~d~~~~  382 (399)
                      ... . .............+...... ........+..+.||||.|+..|+..+     |+.|++.|+++|+.+.+|.||
T Consensus       462 ~~~-~-~~~~~~~~~~~~~v~~~~ii-~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TP  538 (764)
T PHA02716        462 DLY-T-DEYEPYDSTKIHDVYHCAII-ERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTP  538 (764)
T ss_pred             hhh-h-hhhhhccccccchhhHHHHH-hhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCH
Confidence            000 0 00000000000011111000 111223345677899999999998754     599999999999999999999


Q ss_pred             HHHhhcccc
Q psy1036         383 LHVVCSRCS  391 (399)
Q Consensus       383 l~~~~~~~~  391 (399)
                      ||-|++...
T Consensus       539 Lh~A~~~g~  547 (764)
T PHA02716        539 LMLTMRNNR  547 (764)
T ss_pred             HHHHHHcCC
Confidence            999998664

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.7e-26  Score=226.28  Aligned_cols=238  Identities=18%  Similarity=0.183  Sum_probs=176.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC------Cccc
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------FTNL  159 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~------~~~l  159 (399)
                      +.++||.|+..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.|++++      .+++
T Consensus         2 ~~~~L~~A~~~g~~~iv~--------~Ll~~g~~~n~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L   72 (413)
T PHA02875          2 DQVALCDAILFGELDIAR--------RLLDIGINPNF-EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL   72 (413)
T ss_pred             CchHHHHHHHhCCHHHHH--------HHHHCCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHH
Confidence            357999999999999999        88899998887 46579999999999999999999999998743      3466


Q ss_pred             cccCCChhHHH-HHHhhhccCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         160 LYDSDTPSYIE-RSDILLDLYV-NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       160 ~~a~~~~~~~~-~~~~~~~~~v-n~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                      ++++..+.... ..++..+.++ +..+. .|+||||+|+..|+.+++++|+++| ++++.++..|+||||+|+..|+.++
T Consensus        73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~~~~~g~tpLh~A~~~~~~~~  150 (413)
T PHA02875         73 HDAVEEGDVKAVEELLDLGKFADDVFYK-DGMTPLHLATILKKLDIMKLLIARG-ADPDIPNTDKFSPLHLAVMMGDIKG  150 (413)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcccccccC-CCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            77665554433 3444445444 34555 6999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      ++.|++...........+.+....++...   ..++++.+                 ...|.                  
T Consensus       151 v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g---~~eiv~~L-----------------l~~ga------------------  192 (413)
T PHA02875        151 IELLIDHKACLDIEDCCGCTPLIIAMAKG---DIAICKML-----------------LDSGA------------------  192 (413)
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHH-----------------HhCCC------------------
Confidence            99999987543333222222222221111   12222211                 11110                  


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCc-hHHHHHHHHHHhhcCHHHHHHHhhcCCCeeec---CCCchhHHHHhhccccC
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLK-SQELVKLRKLIEKGNLADVRKLVWDNPRYLVS---SGDFPTILHVVCSRCSG  392 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~---s~d~~~~l~~~~~~~~~  392 (399)
                                          .....+ .++.|++|.|++.|+.++|+.|+..||++++.   .+++.|+|+..+..|..
T Consensus       193 --------------------~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~  251 (413)
T PHA02875        193 --------------------NIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTN  251 (413)
T ss_pred             --------------------CCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCC
Confidence                                011111 22358999999999999999999999999987   78899999988766643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=9.1e-26  Score=238.41  Aligned_cols=288  Identities=14%  Similarity=0.075  Sum_probs=150.2

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC--cc
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF--TN  158 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~--~~  158 (399)
                      ..+..|.||||+||..|+.++|+        +|++.|++++.. +..|+||||+|+..|+.+++++|++.+.+...  ..
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~--------~LL~~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~  243 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVN--------LLLSYGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS  243 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHH--------HHHHCCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH
Confidence            33445555555555555555555        555555555442 33455555555555555555555554433111  11


Q ss_pred             ccccCCChhHH-HHHHhhhccCCCCCCCCCCchHHHHHHHcCCH-HHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC-CH
Q psy1036         159 LLYDSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSV-ECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP-SV  235 (399)
Q Consensus       159 l~~a~~~~~~~-~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~-~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g-~~  235 (399)
                      ++.+...+... ..+++..++++|..|. .|+||||+|+..|+. +++++|++.| ++++.+|..|+||||+|+..| ..
T Consensus       244 L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa~~g~~~  321 (682)
T PHA02876        244 LLKAIRNEDLETSLLLYDAGFSVNSIDD-CKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNGYDT  321 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCCH
Confidence            11111111111 1344555666777776 577777777777765 4777777777 777777777777777777777 47


Q ss_pred             HHHHHHHhccCchhhcccCCCCccchhhhhc---hHHHHHHHHHhhcccccc-----cc--------ChHHH-HHHHhcC
Q psy1036         236 DSMGPLSTKLTPTKVATKSEGTEEGERVFDN---KEEALLFIKKNKKIRFKS-----FR--------NFQDA-QNFAYHG  298 (399)
Q Consensus       236 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~k~~r~~~-----~~--------~~~~a-~~~a~~~  298 (399)
                      ++++.|+..+.........+.  ..++....   ..+....+.. .++....     .+        ...+. ..+...|
T Consensus       322 ~~v~~Ll~~gadin~~d~~g~--TpLh~A~~~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        322 ENIRTLIMLGADVNAADRLYI--TPLHQASTLDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             HHHHHHHHcCCCCCCcccCCC--cHHHHHHHhCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            777777766543333222222  22222211   1222222211 1111110     00        11111 1111111


Q ss_pred             CccCCC--CCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhc-CHHHHHHHhhcCCCeeec
Q psy1036         299 SCGVNT--SLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKG-NLADVRKLVWDNPRYLVS  375 (399)
Q Consensus       299 ~~~~~~--s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G-~~~~v~~lv~~~~~~~~~  375 (399)
                      . +...  .-..+++    +.++..+....+.. ...+.+......+..+.||||.|++.| +.++|+.|+..|+++++.
T Consensus       399 a-d~~~~~~~g~T~L----h~A~~~~~~~~~vk-~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        399 A-DIEALSQKIGTAL----HFALCGTNPYMSVK-TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             C-CccccCCCCCchH----HHHHHcCCHHHHHH-HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            1 1100  0001111    11110000001111 133445556667778889999999987 799999999999999999


Q ss_pred             CCCchhHHHHhhc
Q psy1036         376 SGDFPTILHVVCS  388 (399)
Q Consensus       376 s~d~~~~l~~~~~  388 (399)
                      +.+|.|+||.|+.
T Consensus       473 d~~g~tpl~~a~~  485 (682)
T PHA02876        473 NIQNQYPLLIALE  485 (682)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=8e-26  Score=228.85  Aligned_cols=249  Identities=16%  Similarity=0.095  Sum_probs=162.9

Q ss_pred             CCCccchHHHHHHHHcC---CHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHhccCCCCC
Q psy1036          81 SLKSQELVKLRKLIEKG---NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV-NPAMTEMLLEIIGNPAF  156 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G---~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g-~~~iv~~Ll~~ga~~~~  156 (399)
                      ..+..|.||||+|+..|   +.++|+        +|++.|++++.. +..|+||||+|+..| +.+++++|++.|++   
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~--------~Ll~~Gadin~~-~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~---  109 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVR--------LLLEAGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIKAGAD---  109 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHH--------HHHHCCCCCCCC-CCCCCCHHHHHHHcCCcHHHHHHHHHcCCC---
Confidence            34567889999999999   999999        888999999884 668999999999999 59999999999997   


Q ss_pred             ccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC-
Q psy1036         157 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAA--KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP-  233 (399)
Q Consensus       157 ~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa--~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g-  233 (399)
                                             +|.+|. .|+||||+|+  ..++.+++++|+++| ++++.+|..|.||||+|+..+ 
T Consensus       110 -----------------------in~~~~-~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095        110 -----------------------VNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             -----------------------CCCCCC-CCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCC
Confidence                                   677776 5777777777  445677777777777 777777777777777776654 


Q ss_pred             -CHHHHHHHHhccCchhhcccCCCCccchhhhh----chHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCC
Q psy1036         234 -SVDSMGPLSTKLTPTKVATKSEGTEEGERVFD----NKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLE  308 (399)
Q Consensus       234 -~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~  308 (399)
                       +.+++++|++.+........  .....+|.+.    ...+.++.+... ++......         ..|         .
T Consensus       165 ~~~~iv~~Ll~~g~~~~~~d~--~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d---------~~g---------~  223 (471)
T PHA03095        165 ANVELLRLLIDAGADVYAVDD--RFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATD---------MLG---------N  223 (471)
T ss_pred             CCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccC---------CCC---------C
Confidence             46777777776643322211  1122222221    112222222111 11100000         000         1


Q ss_pred             CCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         309 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       309 ~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                      +|++.    ++..+......-....+.+......+..+.||||+|+..|+.++|+.|+..|+++++.+.+|.|+||.|++
T Consensus       224 tpLh~----Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        224 TPLHS----MATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             CHHHH----HHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            11111    00000000000001222333445556677899999999999999999999999999999999999999987


Q ss_pred             ccc
Q psy1036         389 RCS  391 (399)
Q Consensus       389 ~~~  391 (399)
                      ...
T Consensus       300 ~~~  302 (471)
T PHA03095        300 NNN  302 (471)
T ss_pred             hCC
Confidence            544

>KOG0509|consensus

Probab=99.94  E-value=9.3e-27  Score=228.64  Aligned_cols=206  Identities=19%  Similarity=0.206  Sum_probs=149.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhC-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~-g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      ...++.|++.|+++.|+        .|++. |.+++. .|..|.|+|||||.+++.+++++|+++|++            
T Consensus        45 ~~~~v~A~q~G~l~~v~--------~lve~~g~~v~~-~D~~g~tlLHWAAiNNrl~v~r~li~~gad------------  103 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVK--------ELVESEGESVNN-PDREGVTLLHWAAINNRLDVARYLISHGAD------------  103 (600)
T ss_pred             hhhhhhHhhcchHHHHH--------HHHhhcCcCCCC-CCcCCccceeHHHHcCcHHHHHHHHHcCCC------------
Confidence            45788889999999998        44455 656555 355788899999999999999999998887            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    +|..+...+.|||||||++|+..+|.+|+++| ||++.+|..|.||+|+|++.|+.-++-+|+.++
T Consensus       104 --------------vn~~gG~l~stPLHWAar~G~~~vv~lLlqhG-Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~  168 (600)
T KOG0509|consen  104 --------------VNAIGGVLGSTPLHWAARNGHISVVDLLLQHG-ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG  168 (600)
T ss_pred             --------------ccccCCCCCCCcchHHHHcCcHHHHHHHHHcC-CCCceecCCCCcHHHHHHHhCchHHHHHHHHhc
Confidence                          77777446889999999999999999999998 888999999999999999999988888888888


Q ss_pred             CchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCc
Q psy1036         246 TPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALP  325 (399)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~  325 (399)
                      ...++...++.+....+.|........                    .+.+.|                           
T Consensus       169 ~d~d~~D~~grTpLmwAaykg~~~~v~--------------------~LL~f~---------------------------  201 (600)
T KOG0509|consen  169 ADIDLRDNNGRTPLMWAAYKGFALFVR--------------------RLLKFG---------------------------  201 (600)
T ss_pred             ccCCCcCCCCCCHHHHHHHhcccHHHH--------------------HHHHhc---------------------------
Confidence            544444333333222222211111000                    111111                           


Q ss_pred             ccccccccCCCCCCCCCc-hHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHh
Q psy1036         326 QVSSLAAAEKPSPFKSLK-SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVV  386 (399)
Q Consensus       326 ~~~~~~~~e~~~~~~~~~-~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~  386 (399)
                                 ....... ..+.||||+|+..||+.+|.+|++-++++-.+..+|.||+.-|
T Consensus       202 -----------a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  202 -----------ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             -----------ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHH
Confidence                       0111111 3457999999999999999988888899999988888888776

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=219.72  Aligned_cols=53  Identities=11%  Similarity=-0.063  Sum_probs=46.9

Q ss_pred             CCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         339 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       339 ~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                      ....+..+.||||.|+..|+.++|+.|+..||++++.+.+|.||||.|++.+.
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence            33445567899999999999999999999999999999999999999997653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=201.77  Aligned_cols=122  Identities=16%  Similarity=0.037  Sum_probs=108.7

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      ++.||||+|+..|+.++|+        +|+..|++++. ++..|+||||+||..|+.+++++|+++|++           
T Consensus        60 d~~TpLh~Aa~~g~~eiV~--------lLL~~Gadvn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-----------  119 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVK--------ILLFSGMDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWR-----------  119 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence            4689999999999999999        88899988887 577899999999999999999999999987           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCc-hHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNE-TPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~-TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                     +|.++. .|+ ||||+|+..|+.++|++|++++ .+.  .| ..|+||||+|+.+|+.++++.|+
T Consensus       120 ---------------in~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~-~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        120 ---------------LMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEI-PST--FDLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             ---------------cCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcC-Ccc--cccccCccHHHHHHHcCCHHHHHHHH
Confidence                           788887 574 9999999999999999999988 332  23 35899999999999999999999


Q ss_pred             hcc
Q psy1036         243 TKL  245 (399)
Q Consensus       243 ~~~  245 (399)
                      +.+
T Consensus       181 ~~g  183 (284)
T PHA02791        181 DYM  183 (284)
T ss_pred             HCC
Confidence            864

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.4e-24  Score=224.96  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=120.7

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC------Cc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------FT  157 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~------~~  157 (399)
                      .+..++|+.|+..|+.++++        +|++.|++++. ++..|+||||+||..|+.++|++|+++|++.+      .+
T Consensus       143 ~~~~~~l~~~i~~~~~~i~k--------~Ll~~Gadvn~-~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t  213 (682)
T PHA02876        143 IEYMKLIKERIQQDELLIAE--------MLLEGGADVNA-KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLS  213 (682)
T ss_pred             hhhhHHHHHHHHCCcHHHHH--------HHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCC
Confidence            44567999999999999999        89999999988 57789999999999999999999999998843      44


Q ss_pred             cccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH-
Q psy1036         158 NLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV-  235 (399)
Q Consensus       158 ~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~-  235 (399)
                      +++++...+.... ..++..+.+++     .+.++|+.|+..++.+++++|++.| ++++..|..|+||||+|+..++. 
T Consensus       214 ~L~~A~~~~~~~ivk~Ll~~~~~~~-----~~~~~L~~ai~~~~~~~~~~Ll~~g-~~vn~~d~~g~TpLh~Aa~~~~~~  287 (682)
T PHA02876        214 VLECAVDSKNIDTIKAIIDNRSNIN-----KNDLSLLKAIRNEDLETSLLLYDAG-FSVNSIDDCKNTPLHHASQAPSLS  287 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCC-----CCcHHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCHH
Confidence            5555544333222 22222332222     3568899999999999999999999 99999999999999999999986 


Q ss_pred             HHHHHHHhccCchhh
Q psy1036         236 DSMGPLSTKLTPTKV  250 (399)
Q Consensus       236 ~iv~~Ll~~~~~~~~  250 (399)
                      ++++.|++.+.....
T Consensus       288 ~iv~lLl~~gadin~  302 (682)
T PHA02876        288 RLVPKLLERGADVNA  302 (682)
T ss_pred             HHHHHHHHCCCCCCC
Confidence            588889888754433

>PHA02946 ankyin-like protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=214.66  Aligned_cols=210  Identities=16%  Similarity=0.106  Sum_probs=144.7

Q ss_pred             hHHHHHHHH--cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          87 LVKLRKLIE--KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        87 ~T~Lh~Aa~--~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      .++||.++.  .++.++|+        +|++.|++++. ++..|+||||+||..|+.++|++|+++|++           
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~--------~Ll~~Gadvn~-~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-----------   97 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVE--------ELLHRGYSPNE-TDDDGNYPLHIASKINNNRIVAMLLTHGAD-----------   97 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHH--------HHHHCcCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-----------
Confidence            578998764  45788999        88899999988 577899999999999999999999999998           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCccc-CCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG--SVECVKRLIGCAKIQTSV-RNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g--~~~iv~~LL~~g~a~~~~-~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                     +|.+|. .|+||||+|+..+  ..+++++|+++| ++++. .|..|.|||| |+..++.++++.|
T Consensus        98 ---------------in~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~G-adin~~~d~~g~tpL~-aa~~~~~~vv~~L  159 (446)
T PHA02946         98 ---------------PNACDK-QHKTPLYYLSGTDDEVIERINLLVQYG-AKINNSVDEEGCGPLL-ACTDPSERVFKKI  159 (446)
T ss_pred             ---------------CCCCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC-CCcccccCCCCCcHHH-HHHCCChHHHHHH
Confidence                           788887 6888888888765  478888888888 78875 5788888886 6667888888888


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      ++.+.......+.+.+....++..... ..+.+                  ++.                          
T Consensus       160 l~~gad~~~~d~~G~t~Lh~A~~~~~~-~~~~v------------------~~L--------------------------  194 (446)
T PHA02946        160 MSIGFEARIVDKFGKNHIHRHLMSDNP-KASTI------------------SWM--------------------------  194 (446)
T ss_pred             HhccccccccCCCCCCHHHHHHHhcCC-CHHHH------------------HHH--------------------------
Confidence            887654443333322222111111000 00001                  110                          


Q ss_pred             CCCcccccccccCCCCCCCCCchHHHHHHHHHHhhc--CHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKG--NLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G--~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                                 .+.+.+....+..+.||||+|++.|  +.++|+.|+. ++++|....+|.|+||.|++.+.
T Consensus       195 -----------l~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        195 -----------MKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             -----------HHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence                       0011112223345567788888775  6777777773 77777777777777877776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=213.61  Aligned_cols=52  Identities=13%  Similarity=-0.010  Sum_probs=46.4

Q ss_pred             CCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         340 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       340 ~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                      ...+..+.||||.|++.|+.++|+.|+..|+++++.+.+|.||||.|++...
T Consensus       250 n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             CCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            3445567899999999999999999999999999999999999999987643

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.7e-23  Score=214.36  Aligned_cols=154  Identities=20%  Similarity=0.111  Sum_probs=105.5

Q ss_pred             CCCCccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC----------------
Q psy1036          80 KSLKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN----------------  140 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~----------------  140 (399)
                      ...+..|.||||+||..   |+.++|+        +|++.|++++. .+..|+||||+|+..|+                
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~--------~Ll~~ga~v~~-~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~   96 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVK--------LLLDSGTNPLH-KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG   96 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHH--------HHHHCCCCccc-cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC
Confidence            44477888999997665   7799999        88888888876 56778899998887654                


Q ss_pred             -------------------HHHHHHHHhccCCCC------Ccccccc-CCChhHHH--HHHhhhccCCCCCCCC--CC--
Q psy1036         141 -------------------PAMTEMLLEIIGNPA------FTNLLYD-SDTPSYIE--RSDILLDLYVNTPDKA--LN--  188 (399)
Q Consensus       141 -------------------~~iv~~Ll~~ga~~~------~~~l~~a-~~~~~~~~--~~~~~~~~~vn~~d~~--~G--  188 (399)
                                         .++|++|+++|++.+      .++++.+ +...++.+  .+++..|+++|..|..  .|  
T Consensus        97 ~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~  176 (661)
T PHA02917         97 YSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYA  176 (661)
T ss_pred             CCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccc
Confidence                               445555555555532      3445532 22222332  5556667777654421  13  


Q ss_pred             ---------chHHHHHHH-----------cCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH--HHHHHHHh
Q psy1036         189 ---------ETPLHFAAK-----------FGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV--DSMGPLST  243 (399)
Q Consensus       189 ---------~TpLh~Aa~-----------~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~--~iv~~Ll~  243 (399)
                               .||||+|+.           +++.++|++|+++| ++++.+|.+|+||||+|+.+|+.  ++++.|++
T Consensus       177 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                     488888875           45778888888888 78888888888888888888874  68888765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.7e-23  Score=187.73  Aligned_cols=175  Identities=13%  Similarity=0.035  Sum_probs=142.0

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHhccCCCCCccccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g--~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      ....||||+|+..|+.+.|+        .|++.+..    .+..|.||||+|+..+  +.+++++|+++|++        
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk--------~Li~~~n~----~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad--------   78 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVK--------KWIKFVND----CNDLYETPIFSCLEKDKVNVEILKFLIENGAD--------   78 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHH--------HHHHhhhc----cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC--------
Confidence            34568999999999999999        55554332    3557999999999854  89999999999998        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHc---CCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh--CCCHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKF---GSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK--MPSVD  236 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~---g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~--~g~~~  236 (399)
                                        +|.++...|+||||+|+..   ++.+++++|+++| ++++.+|..|+||||+|+.  .++.+
T Consensus        79 ------------------vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g-adin~~d~~G~TpLh~a~~~~~~~~~  139 (209)
T PHA02859         79 ------------------VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG-SSITEEDEDGKNLLHMYMCNFNVRIN  139 (209)
T ss_pred             ------------------CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhccCCHH
Confidence                              7888632699999998864   4799999999999 9999999999999999976  45788


Q ss_pred             HHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCcc
Q psy1036         237 SMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTV  316 (399)
Q Consensus       237 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~  316 (399)
                      ++++|++.+...                                                                    
T Consensus       140 iv~~Li~~gadi--------------------------------------------------------------------  151 (209)
T PHA02859        140 VIKLLIDSGVSF--------------------------------------------------------------------  151 (209)
T ss_pred             HHHHHHHcCCCc--------------------------------------------------------------------
Confidence            888887643100                                                                    


Q ss_pred             ccCCCCCCcccccccccCCCCCCCCCchHHHHHHHH-HHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         317 TAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRK-LIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       317 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~-aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                             ...+..+.|+||. |+..|+.++|+.|+..|+++++....|.|+||-|+-
T Consensus       152 -----------------------n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        152 -----------------------LNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             -----------------------ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence                                   0111244688996 567899999999999999999999999999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.91  E-value=9.6e-24  Score=218.92  Aligned_cols=293  Identities=12%  Similarity=0.051  Sum_probs=182.7

Q ss_pred             cchhhhhcCCCCCCCCCccchHHHHHHHHcCC--HHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHH---------
Q psy1036          67 VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN--LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVS---------  135 (399)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~--~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~A---------  135 (399)
                      +...+... .......+..|.||||+|+..|+  .++|+        +|++.|++++. ++..|+||||+|         
T Consensus       194 IVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk--------lLLe~GADVN~-kD~~G~TPLh~Ai~~a~n~~~  263 (764)
T PHA02716        194 ILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIK--------KIIELGGDMDM-KCVNGMSPIMTYIINIDNINP  263 (764)
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHhhhccCH
Confidence            44444433 34556667889999999999995  48999        88899999998 577899999975         


Q ss_pred             ----------------------------HHcCCHHHHHHHHhccCC------CCCccccccCCC-hh--HHHHHHhhhcc
Q psy1036         136 ----------------------------TKAVNPAMTEMLLEIIGN------PAFTNLLYDSDT-PS--YIERSDILLDL  178 (399)
Q Consensus       136 ----------------------------a~~g~~~iv~~Ll~~ga~------~~~~~l~~a~~~-~~--~~~~~~~~~~~  178 (399)
                                                  +..|+.+++++|++.|++      .+.+++|+++.. ..  ....+++..|+
T Consensus       264 EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        264 EITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             HHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence                                        445788999999999987      456788876432 22  23356667899


Q ss_pred             CCCCCCCCCCchHHHHHHH--------------cCCHHHHHHHHhCCCCCcccCCCCCCcHHHH----HHhCCCHHHHHH
Q psy1036         179 YVNTPDKALNETPLHFAAK--------------FGSVECVKRLIGCAKIQTSVRNKEGKTPLDV----CFKMPSVDSMGP  240 (399)
Q Consensus       179 ~vn~~d~~~G~TpLh~Aa~--------------~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~----A~~~g~~~iv~~  240 (399)
                      ++|.+|. .|+||||+|+.              .++.++|++|+++| ++++.+|..|+||||.    |...++.+++++
T Consensus       344 DIN~kD~-~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvkl  421 (764)
T PHA02716        344 DLNEPDN-IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDC  421 (764)
T ss_pred             CCccCCC-CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHH
Confidence            9999999 79999999875              37899999999999 9999999999999993    334578999999


Q ss_pred             HHhccCchhhcc--------cCCCCccchhhhhch-H-HHHHHHHHhhccccccccChHHHHHHHh-cC-CccCCCCCCC
Q psy1036         241 LSTKLTPTKVAT--------KSEGTEEGERVFDNK-E-EALLFIKKNKKIRFKSFRNFQDAQNFAY-HG-SCGVNTSLLE  308 (399)
Q Consensus       241 Ll~~~~~~~~~~--------~~~~~~~~~~~~~~~-~-~~l~~~~~~k~~r~~~~~~~~~a~~~a~-~~-~~~~~~s~~~  308 (399)
                      |++......+..        +.+.....++....+ . .........+....   ....+...+.. .+ .......-..
T Consensus       422 Lis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~---~~~~~v~~~~ii~~~nvN~~D~~G~  498 (764)
T PHA02716        422 LISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDS---TKIHDVYHCAIIERYNNAVCETSGM  498 (764)
T ss_pred             HHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccc---cccchhhHHHHHhhccccccCCCCC
Confidence            998642211110        000111011111100 0 00000000000000   00000111100 00 0011111224


Q ss_pred             CCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCH-----HHHHHHhhcCCCeeec
Q psy1036         309 APASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNL-----ADVRKLVWDNPRYLVS  375 (399)
Q Consensus       309 ~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~-----~~v~~lv~~~~~~~~~  375 (399)
                      ||+.-+...|......+++... +.+.+.+....+..+.||||+|+++|+.     ++|+.|+..||++.+-
T Consensus       499 TPLh~Aa~~g~~~~v~~e~~k~-LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        499 TPLHVSIISHTNANIVMDSFVY-LLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             CHHHHHHHcCCccchhHHHHHH-HHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            5443222222111001111122 3455666777888999999999999987     9999999999998776

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.1e-23  Score=206.37  Aligned_cols=238  Identities=16%  Similarity=0.135  Sum_probs=156.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g-~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      .|+.|+..|+++.|+        .|+..+ ...+. .+..|.||||+|+..|+.++|++|++.|++              
T Consensus         4 ~l~~ai~~gd~~~v~--------~ll~~~~~~~n~-~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~--------------   60 (434)
T PHA02874          4 DLRMCIYSGDIEAIE--------KIIKNKGNCINI-SVDETTTPLIDAIRSGDAKIVELFIKHGAD--------------   60 (434)
T ss_pred             HHHHHHhcCCHHHHH--------HHHHcCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--------------
Confidence            689999999999999        555543 33444 355789999999999999999999999987              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC----------------------CCcccCCCCCCcH
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK----------------------IQTSVRNKEGKTP  225 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~----------------------a~~~~~d~~G~Tp  225 (399)
                                  +|..+. .|.||||+|+..|+.+++++|+++|.                      ++++.+|..|+||
T Consensus        61 ------------~n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~  127 (434)
T PHA02874         61 ------------INHINT-KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTF  127 (434)
T ss_pred             ------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccH
Confidence                        788888 69999999999999999999998761                      3567789999999


Q ss_pred             HHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCC
Q psy1036         226 LDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTS  305 (399)
Q Consensus       226 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s  305 (399)
                      ||+|+..|+.+++++|++.+.........+.+....++.....+.++.+-. .++.....                  ..
T Consensus       128 Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~------------------~~  188 (434)
T PHA02874        128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVK------------------DN  188 (434)
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC------------------CC
Confidence            999999999999999999875544433333322222222222222222221 11111100                  00


Q ss_pred             CCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHH
Q psy1036         306 LLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHV  385 (399)
Q Consensus       306 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~  385 (399)
                      -..+|+..    ++..+ ...+... ..+.+.........+.||||.|+..++ .+++.|+ .|++++.++.+|.|+||.
T Consensus       189 ~g~tpL~~----A~~~g-~~~iv~~-Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        189 NGESPLHN----AAEYG-DYACIKL-LIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHH  260 (434)
T ss_pred             CCCCHHHH----HHHcC-CHHHHHH-HHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHH
Confidence            00111111    11111 1122222 223333334444567788888887665 4566555 578888888888888888


Q ss_pred             hhcc
Q psy1036         386 VCSR  389 (399)
Q Consensus       386 ~~~~  389 (399)
                      |++.
T Consensus       261 A~~~  264 (434)
T PHA02874        261 AINP  264 (434)
T ss_pred             HHhc
Confidence            8763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3e-23  Score=210.57  Aligned_cols=241  Identities=17%  Similarity=0.123  Sum_probs=181.9

Q ss_pred             CcccchhhhhcCCCCCCCCCccchHHHHH-----HHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHH--
Q psy1036          64 LPQVSSLAAAEKPSPFKSLKSQELVKLRK-----LIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST--  136 (399)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~~~~~~~T~Lh~-----Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa--  136 (399)
                      ...+...+...... ....+..+.||||.     |+..|+.++++        +|++.|++++. .+..|+||||+|+  
T Consensus        47 ~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~--------~Ll~~ga~i~~-~d~~g~tpL~~A~~~  116 (480)
T PHA03100         47 NIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVK--------LLLEYGANVNA-PDNNGITPLLYAISK  116 (480)
T ss_pred             CHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHH--------HHHHCCCCCCC-CCCCCCchhhHHHhc
Confidence            34444555544432 33446678899999     99999999999        88899988876 5778999999999  


Q ss_pred             HcCCHHHHHHHHhccCCC------CCccccccCCChh-HHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         137 KAVNPAMTEMLLEIIGNP------AFTNLLYDSDTPS-YIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       137 ~~g~~~iv~~Ll~~ga~~------~~~~l~~a~~~~~-~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                      ..|+.+++++|++.|++.      +.+++++++..+. ...  .+++..|+++|.+|. .|.||||+|+..|+.+++++|
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~L  195 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFL  195 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999874      5567788776652 222  666778899999998 799999999999999999999


Q ss_pred             HhCCCCCcccCCCCC------CcHHHHHHhCCC--HHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhc
Q psy1036         208 IGCAKIQTSVRNKEG------KTPLDVCFKMPS--VDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKK  279 (399)
Q Consensus       208 L~~g~a~~~~~d~~G------~TpL~~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~  279 (399)
                      +++| ++++..+..|      .||||+|+..|+  .+++++|++.+.+.......+.+....++....   .++++.+  
T Consensus       196 l~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~---~~iv~~L--  269 (480)
T PHA03100        196 LDNG-ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN---PEFVKYL--  269 (480)
T ss_pred             HHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHH--
Confidence            9999 9999999999      999999999999  999999999875433332222222211111111   2222211  


Q ss_pred             cccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCH
Q psy1036         280 IRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNL  359 (399)
Q Consensus       280 ~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~  359 (399)
                                     ...|                                      ......+..+.||+|.|++.|+.
T Consensus       270 ---------------l~~g--------------------------------------ad~n~~d~~g~tpl~~A~~~~~~  296 (480)
T PHA03100        270 ---------------LDLG--------------------------------------ANPNLVNKYGDTPLHIAILNNNK  296 (480)
T ss_pred             ---------------HHcC--------------------------------------CCCCccCCCCCcHHHHHHHhCCH
Confidence                           1011                                      11223345667999999999999


Q ss_pred             HHHHHHhhcCCCeee
Q psy1036         360 ADVRKLVWDNPRYLV  374 (399)
Q Consensus       360 ~~v~~lv~~~~~~~~  374 (399)
                      ++|+.|+..||+++.
T Consensus       297 ~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        297 EIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHHHHHHhcCCCHHH
Confidence            999999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=210.61  Aligned_cols=242  Identities=14%  Similarity=0.084  Sum_probs=171.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHhccCCCCCccccccCCC
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV---NPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g---~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      ....++..+++++|+        +|++.|++++. .+..|.||||+|+..|   +.+++++|++.|++            
T Consensus        17 ~~~~~~~~~~~~~v~--------~Ll~~ga~vn~-~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad------------   75 (471)
T PHA03095         17 DYLLNASNVTVEEVR--------RLLAAGADVNF-RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD------------   75 (471)
T ss_pred             HHHHcCCCCCHHHHH--------HHHHcCCCccc-CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC------------
Confidence            446778899999999        88899999887 5778999999999998   99999999999998            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCcccCCCCCCcHHHHHH--hCCCHHHHHHHH
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFG-SVECVKRLIGCAKIQTSVRNKEGKTPLDVCF--KMPSVDSMGPLS  242 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g-~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~--~~g~~~iv~~Ll  242 (399)
                                    +|.+|. .|+||||+|+..| +.+++++|+++| ++++.+|..|+||||+|+  ..++.++++.|+
T Consensus        76 --------------in~~~~-~g~TpLh~A~~~~~~~~iv~lLl~~g-a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll  139 (471)
T PHA03095         76 --------------VNAPER-CGFTPLHLYLYNATTLDVIKLLIKAG-ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL  139 (471)
T ss_pred             --------------CCCCCC-CCCCHHHHHHHcCCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHH
Confidence                          899998 6999999999999 599999999999 999999999999999999  567899999999


Q ss_pred             hccCchhhcccCCCCccchhhhhc-hHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         243 TKLTPTKVATKSEGTEEGERVFDN-KEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      +.+.........+  ...++++.. .....++++.+-.........  +     ..|         .++++-   .....
T Consensus       140 ~~gad~~~~d~~g--~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~--d-----~~g---------~t~Lh~---~~~~~  198 (471)
T PHA03095        140 RKGADVNALDLYG--MTPLAVLLKSRNANVELLRLLIDAGADVYAV--D-----DRF---------RSLLHH---HLQSF  198 (471)
T ss_pred             HcCCCCCccCCCC--CCHHHHHHHcCCCCHHHHHHHHHcCCCCccc--C-----CCC---------CCHHHH---HHHHC
Confidence            9885543333332  233333221 111233333321111111000  0     000         011000   00000


Q ss_pred             CCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCH--HHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNL--ADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~--~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                      .....+... ..+.+......+..+.||||.|+..|+.  .+|+.|+..|+++|..+.+|.|+||.|++.
T Consensus       199 ~~~~~i~~~-Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~  267 (471)
T PHA03095        199 KPRARIVRE-LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVF  267 (471)
T ss_pred             CCcHHHHHH-HHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            000111111 2233344455567788999999999986  689999999999999999999999999874

>KOG0510|consensus

Probab=99.90  E-value=1.9e-23  Score=209.18  Aligned_cols=269  Identities=17%  Similarity=0.180  Sum_probs=184.1

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC------C
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------F  156 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~------~  156 (399)
                      +..+.+|+|.|+..|+..+++        .|++.|++++. .+.+|.||||+||.+++.+..+.|++.|+++.      .
T Consensus       118 n~~~~aplh~A~~~~~~s~L~--------~Ll~~~~dvnl-~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~  188 (929)
T KOG0510|consen  118 NLNKNAPLHLAADSGNYSCLK--------LLLDYGADVNL-EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGN  188 (929)
T ss_pred             hhhccCchhhccccchHHHHH--------HHHHhcCCccc-cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCC
Confidence            345567888888888888888        88899999998 46689999999999999998899999999843      2


Q ss_pred             ccccccCCChh--HHHHH-H---hhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC--------------cc
Q psy1036         157 TNLLYDSDTPS--YIERS-D---ILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ--------------TS  216 (399)
Q Consensus       157 ~~l~~a~~~~~--~~~~~-~---~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~--------------~~  216 (399)
                      .+.|.++..+.  ..+.+ .   ...+..+|.-+. .|.||||.|+..|+.++++.+|+.|+.+              ++
T Consensus       189 ~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~  267 (929)
T KOG0510|consen  189 FPIHEAARSGSKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVN  267 (929)
T ss_pred             chHHHHHHhcchhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhh
Confidence            33444443222  22222 1   224466888888 7999999999999999999999988522              45


Q ss_pred             cCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccch-hhhhchHHHHHHHHHhhccccccccChHHHHHHH
Q psy1036         217 VRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGE-RVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA  295 (399)
Q Consensus       217 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a  295 (399)
                      ..|++|.||||+|++.|+.+.+..|+..+..-....+++....+. +.|.+.+..-++++ .++.|+-.-      .++ 
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne------~D~-  339 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNE------SDL-  339 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCcccccc------ccc-
Confidence            568999999999999999999999999886544444443333333 23333333333333 444443221      111 


Q ss_pred             hcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCC---CCchHHHHHHHHHHhhcCHHHHHHHhhcCCCe
Q psy1036         296 YHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFK---SLKSQELVKLRKLIEKGNLADVRKLVWDNPRY  372 (399)
Q Consensus       296 ~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~  372 (399)
                       +|         .||++.+.    .++++-.+..++.  .+..+.   ..+..+.|+||+|+..||++.|+.|+++|+++
T Consensus       340 -~g---------~tpLHlaa----~~gH~~v~qlLl~--~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  340 -HG---------MTPLHLAA----KSGHDRVVQLLLN--KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             -cC---------CCchhhhh----hcCHHHHHHHHHh--cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence             12         25544433    3333212222221  122222   44677789999999999999999999999999


Q ss_pred             eecCCCchhHHHH
Q psy1036         373 LVSSGDFPTILHV  385 (399)
Q Consensus       373 ~~~s~d~~~~l~~  385 (399)
                      -+-+..|.+.++.
T Consensus       404 ~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  404 GVKNKKGKSAFDT  416 (929)
T ss_pred             eeccccccccccc
Confidence            9988888888774

>KOG0509|consensus

Probab=99.90  E-value=2.6e-23  Score=204.46  Aligned_cols=139  Identities=21%  Similarity=0.213  Sum_probs=127.2

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      ..+.|+.+|.|+|||||.++++++++        +|+++|+++|.....-+.|||||||++|+..+|.+|+++|++    
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r--------~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd----  137 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVAR--------YLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD----  137 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHH--------HHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC----
Confidence            56678899999999999999999999        999999999986545678999999999999999999999998    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                            ++..|. +|.||||+||+.|+.-+|-+||.++ +++|.+|++|+||||+|+.+|+...
T Consensus       138 ----------------------pt~~D~-~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~  193 (600)
T KOG0509|consen  138 ----------------------PTLKDK-QGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALF  193 (600)
T ss_pred             ----------------------CceecC-CCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHH
Confidence                                  789998 7999999999999999999999999 9999999999999999999999988


Q ss_pred             HHHHHhccCchhhcc
Q psy1036         238 MGPLSTKLTPTKVAT  252 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~  252 (399)
                      +..|++..+......
T Consensus       194 v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  194 VRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHHhcccccccc
Confidence            889998775544443

>KOG0510|consensus

Probab=99.90  E-value=5.9e-23  Score=205.71  Aligned_cols=193  Identities=17%  Similarity=0.142  Sum_probs=140.1

Q ss_pred             hhhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy1036          70 LAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE  149 (399)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~  149 (399)
                      .+...+ .+..-.+..+.||||.||..++.+..+        .|++.|+++.. .+.+|++|+|.|+..|..++.+..+.
T Consensus       139 ~Ll~~~-~dvnl~de~~~TpLh~A~~~~~~E~~k--------~Li~~~a~~~K-~~~~~~~~iH~aa~s~s~e~mEi~l~  208 (929)
T KOG0510|consen  139 LLLDYG-ADVNLEDENGFTPLHLAARKNKVEAKK--------ELINKGADPCK-SDIDGNFPIHEAARSGSKECMEIFLP  208 (929)
T ss_pred             HHHHhc-CCccccccCCCchhhHHHhcChHHHHH--------HHHhcCCCCCc-ccCcCCchHHHHHHhcchhhhhhhhc
Confidence            333333 445556778899999999999999777        77788988887 47789999999999999999999887


Q ss_pred             -----ccCC------CCCccccccCCChhHHH---HHHhhh-------------ccCCCCCCCCCCchHHHHHHHcCCHH
Q psy1036         150 -----IIGN------PAFTNLLYDSDTPSYIE---RSDILL-------------DLYVNTPDKALNETPLHFAAKFGSVE  202 (399)
Q Consensus       150 -----~ga~------~~~~~l~~a~~~~~~~~---~~~~~~-------------~~~vn~~d~~~G~TpLh~Aa~~g~~~  202 (399)
                           .+..      .+.+++|.+...+....   ++....             ..-+|..|+ .|.||||+||+.|+.+
T Consensus       209 ~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~  287 (929)
T KOG0510|consen  209 EHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPE  287 (929)
T ss_pred             cccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChh
Confidence                 2222      33456676665544322   111111             112678888 5999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchh-hcccCCCCccchhhhhchHHHHHHHHH
Q psy1036         203 CVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK-VATKSEGTEEGERVFDNKEEALLFIKK  276 (399)
Q Consensus       203 iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (399)
                      +|..|+..| ++++.+++++.||||.|+.+|+.+.++.|++ ..... ....+......+|+.. +++.-++++.
T Consensus       288 svd~Ll~~G-a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa-~~gH~~v~ql  359 (929)
T KOG0510|consen  288 SVDNLLGFG-ASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAA-KSGHDRVVQL  359 (929)
T ss_pred             HHHHHHHcC-CcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhh-hcCHHHHHHH
Confidence            999999999 9999999999999999999999999999999 22222 2222323333344433 5555555554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5.9e-22  Score=201.03  Aligned_cols=109  Identities=31%  Similarity=0.380  Sum_probs=95.7

Q ss_pred             hhhhhCCCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCc
Q psy1036         111 RYLVSSGDFPTILHEGC-RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE  189 (399)
Q Consensus       111 ~~Ll~~g~~~~~~~d~~-g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~  189 (399)
                      ++|++.|++++.. +.. |+||||+||..|+.+++++|++.|++                          +|.+|. .|+
T Consensus       151 ~~Ll~~gadin~~-~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad--------------------------~n~~d~-~g~  202 (477)
T PHA02878        151 KLLLSYGADINMK-DRHKGNTALHYATENKDQRLTELLLSYGAN--------------------------VNIPDK-TNN  202 (477)
T ss_pred             HHHHHcCCCCCcc-CCCCCCCHHHHHHhCCCHHHHHHHHHCCCC--------------------------CCCcCC-CCC
Confidence            4667778777774 444 88888888888888888888888887                          889998 699


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhC-CCHHHHHHHHhccCch
Q psy1036         190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKM-PSVDSMGPLSTKLTPT  248 (399)
Q Consensus       190 TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~~~~~  248 (399)
                      ||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+.. ++.+++++|++++...
T Consensus       203 tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        203 SPLHHAVKHYNKPIVHILLENG-ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             CHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999 99999999999999999976 7899999999987543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=5.8e-22  Score=197.46  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCC-------CC
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN-------PA  155 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~-------~~  155 (399)
                      ...|.||||+|+..|+.++|+        +|++.|++++. .+..++||||+|+..|+.+++++|++.|+.       .+
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~--------~Ll~~ga~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  102 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIK--------LLMKHGAIPDV-KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG  102 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHhCCCCccc-cCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC
Confidence            346778999999999999998        77788877766 345678889999988999999888888764       24


Q ss_pred             CccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         156 FTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                      .+++++++..+.... .+++..|++++.++. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCC
Confidence            567777765543322 566667888888888 6899999999999999999999988 8888889899999999999999


Q ss_pred             HHHHHHHHhccCchhhc
Q psy1036         235 VDSMGPLSTKLTPTKVA  251 (399)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~  251 (399)
                      .+++++|++.+......
T Consensus       181 ~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        181 IAICKMLLDSGANIDYF  197 (413)
T ss_pred             HHHHHHHHhCCCCCCcC
Confidence            99999998887554443

>KOG4177|consensus

Probab=99.88  E-value=6e-23  Score=216.97  Aligned_cols=309  Identities=15%  Similarity=0.085  Sum_probs=179.1

Q ss_pred             hhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy1036          71 AAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI  150 (399)
Q Consensus        71 ~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~  150 (399)
                      +.-.....+.+++..|+||||.|+..|++++|.        +++.+|+.++. .+-+|.||||.||..+..+++++|++.
T Consensus       227 Lll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~--------~l~~~ga~~~~-~~vr~~tplh~AA~~~~~e~~~~ll~~  297 (1143)
T KOG4177|consen  227 LLLKHGADVSAKDESGLTPLHVAAFMGHLDIVK--------LLLQHGASVNV-STVRGETPLHMAARAGQVEVCKLLLQN  297 (1143)
T ss_pred             eeeeccCcCCcccccCccHHHHHHhccchhHHH--------HHHhcccccCc-ccccccCcchhhhccchhhhHhhhhcc
Confidence            344555678889999999999999999999999        88899988888 467899999999999999999999999


Q ss_pred             cCCCCCc---------------------------------------cccccCCChhH-HHHHHhhhccCCCCCCCCCCch
Q psy1036         151 IGNPAFT---------------------------------------NLLYDSDTPSY-IERSDILLDLYVNTPDKALNET  190 (399)
Q Consensus       151 ga~~~~~---------------------------------------~l~~a~~~~~~-~~~~~~~~~~~vn~~d~~~G~T  190 (399)
                      |+++...                                       ++|+++..... +...+...+..-...+. .|+|
T Consensus       298 ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~-k~~~  376 (1143)
T KOG4177|consen  298 GADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEE-KGFT  376 (1143)
T ss_pred             CcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccc-cCCc
Confidence            8773222                                       22222211111 11111112222223333 4666


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhc-hHH
Q psy1036         191 PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDN-KEE  269 (399)
Q Consensus       191 pLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~  269 (399)
                      |+|+|+.+|..+++++|+..| ++++.+++.|.||||+|+.+++..+++.++++++......+.+.+......... ..+
T Consensus       377 pl~la~~~g~~~~v~Lll~~g-a~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~  455 (1143)
T KOG4177|consen  377 PLHLAVKSGRVSVVELLLEAG-ADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQ  455 (1143)
T ss_pred             chhhhcccCchhHHHhhhhcc-CCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhh
Confidence            666666666666666666666 566666666666666666666666666666555443333333222111111111 001


Q ss_pred             HHHHHHHhhcc---ccc-ccc---------------------------------C---------hHHHHHHHhcCC-ccC
Q psy1036         270 ALLFIKKNKKI---RFK-SFR---------------------------------N---------FQDAQNFAYHGS-CGV  302 (399)
Q Consensus       270 ~l~~~~~~k~~---r~~-~~~---------------------------------~---------~~~a~~~a~~~~-~~~  302 (399)
                      .-..+..++..   .++ .|.                                 .         ...+.....+|. ++.
T Consensus       456 ~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  456 IARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             hhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            10011110000   000 011                                 0         000111111111 111


Q ss_pred             CCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhH
Q psy1036         303 NTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI  382 (399)
Q Consensus       303 ~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~  382 (399)
                      -+-...+|+...-+.|..     .... .+.|.+..-..-+..++||||.|++.||.++++.|+.+||++|+.+-|+.|+
T Consensus       536 ~~~r~~TpLh~A~~~g~v-----~~Vk-fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNV-----DLVK-FLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             hcccccchHHHHHhcCCc-----hHHH-HhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence            111112232222222210     1111 1344444455556778899999999999999999999999999999999999


Q ss_pred             HHHhhccccCcccc
Q psy1036         383 LHVVCSRCSGASED  396 (399)
Q Consensus       383 l~~~~~~~~~~~~~  396 (399)
                      ||+|+++|+--..+
T Consensus       610 L~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  610 LHIAVRLGYLSVVK  623 (1143)
T ss_pred             hHHHHHhcccchhh
Confidence            99999999865543

>KOG0508|consensus

Probab=99.87  E-value=3.6e-22  Score=189.26  Aligned_cols=135  Identities=21%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc-cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI-LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~-~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      ..+|.|||.+||++||.++|+.|+++.. .-.+.|..+.. .....|-+||-.|+..||.+||+.|+++|++        
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~-a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~--------  109 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCR-ASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS--------  109 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhc-CCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc--------
Confidence            4566799999999999999995554321 11111111111 1122467899888999999999999999988        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        +|.... ...|||--||.-|+.++|++|+++| +|+++.|..|.|.||+||.+||.+|+++|
T Consensus       110 ------------------VN~tT~-TNStPLraACfDG~leivKyLvE~g-ad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen  110 ------------------VNDTTR-TNSTPLRAACFDGHLEIVKYLVEHG-ADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             ------------------cccccc-cCCccHHHHHhcchhHHHHHHHHcC-CCCcccccCCCeeEEeeeccCchHHHHHH
Confidence                              666555 4567777777777777777777777 77777777777777777777777777777


Q ss_pred             HhccC
Q psy1036         242 STKLT  246 (399)
Q Consensus       242 l~~~~  246 (399)
                      ++++.
T Consensus       170 le~gA  174 (615)
T KOG0508|consen  170 LEQGA  174 (615)
T ss_pred             HHhCC
Confidence            77653

>KOG0508|consensus

Probab=99.87  E-value=4.8e-22  Score=188.44  Aligned_cols=133  Identities=18%  Similarity=0.166  Sum_probs=119.2

Q ss_pred             CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC
Q psy1036          76 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        76 ~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~  155 (399)
                      ...|..-..+|-+||..|+..||+++|+        .|++.|+++|... ...-|||--||..|+.++|++|+++|++  
T Consensus        74 sV~FDge~IegappLWaAsaAGHl~vVk--------~L~~~ga~VN~tT-~TNStPLraACfDG~leivKyLvE~gad--  142 (615)
T KOG0508|consen   74 SVRFDGETIEGAPPLWAASAAGHLEVVK--------LLLRRGASVNDTT-RTNSTPLRAACFDGHLEIVKYLVEHGAD--  142 (615)
T ss_pred             eEEeCCcccCCCchhhHHhccCcHHHHH--------HHHHhcCcccccc-ccCCccHHHHHhcchhHHHHHHHHcCCC--
Confidence            3456666778888999999999999999        8889998887633 2445999999999999999999999998  


Q ss_pred             CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                                              ++..|. .|.|.||+||..||.+|+++|++.| +|+|.++..|+|+||.|++.|+.
T Consensus       143 ------------------------~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  143 ------------------------PEIANR-HGHTCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             ------------------------Cccccc-CCCeeEEeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhhhcccH
Confidence                                    788888 7999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy1036         236 DSMGPLSTKL  245 (399)
Q Consensus       236 ~iv~~Ll~~~  245 (399)
                      |++++|+...
T Consensus       197 divq~Ll~~g  206 (615)
T KOG0508|consen  197 DIVQLLLKHG  206 (615)
T ss_pred             HHHHHHHhCC
Confidence            9999998653

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=3e-21  Score=168.62  Aligned_cols=134  Identities=14%  Similarity=0.146  Sum_probs=112.6

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHhccCCCCCc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN----PAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~----~~iv~~Ll~~ga~~~~~  157 (399)
                      .+..|.|+||+||+.|+.++|+.|+...  .-...|++.+. ++..|+||||+|+..|+    .+++++|++.|++    
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~--~~~~~ga~in~-~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----   89 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFI--RGDCHAAALNA-TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----   89 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHh--ccchhhhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----
Confidence            3567889999999999999999554110  00123556665 47789999999999999    5889999999887    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCcHHHHHHhCCCHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVCFKMPSVD  236 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~-g~a~~~~~d~~G~TpL~~A~~~g~~~  236 (399)
                                            +|.++...|+||||+|+..++.+++++|+.. | ++++.+|..|+||||+|+..++.+
T Consensus        90 ----------------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-~~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         90 ----------------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-IDLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             ----------------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCCHHHHHHHCCCHH
Confidence                                  7888732599999999999999999999984 7 899999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy1036         237 SMGPLSTKL  245 (399)
Q Consensus       237 iv~~Ll~~~  245 (399)
                      +++.|++..
T Consensus       147 iv~~L~~~~  155 (169)
T PHA02741        147 MMQILREIV  155 (169)
T ss_pred             HHHHHHHHH
Confidence            999999765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.86  E-value=9.1e-21  Score=193.47  Aligned_cols=153  Identities=17%  Similarity=0.174  Sum_probs=113.1

Q ss_pred             CCCccchHHHHHHHHcC---CHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHhccCCC-
Q psy1036          81 SLKSQELVKLRKLIEKG---NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNP-  154 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G---~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g--~~~iv~~Ll~~ga~~-  154 (399)
                      ..+..|.||||+|+..|   +.++|+        +|+++|++++. +|..|+||||+|+..+  +.++|++|++.|++. 
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivk--------lLLs~GAdin~-kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~  106 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVR--------LLLSRGVERLC-RNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS  106 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHH--------HHHhCCCCCcc-cCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC
Confidence            34577999999999997   599999        99999999998 5789999999999976  799999999997632 


Q ss_pred             -------CCccccccCC----------------------C-------hh----H-------HH--HHHhhhccCCC----
Q psy1036         155 -------AFTNLLYDSD----------------------T-------PS----Y-------IE--RSDILLDLYVN----  181 (399)
Q Consensus       155 -------~~~~l~~a~~----------------------~-------~~----~-------~~--~~~~~~~~~vn----  181 (399)
                             +.++++....                      .       .+    +       .+  .+++..|++++    
T Consensus       107 ~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~  186 (672)
T PHA02730        107 NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVF  186 (672)
T ss_pred             cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccc
Confidence                   2222211110                      0       00    0       11  45556677774    


Q ss_pred             ---CCCCCCCchHHHHH------HHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHH--HHhCCCHHHHHHHHh
Q psy1036         182 ---TPDKALNETPLHFA------AKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV--CFKMPSVDSMGPLST  243 (399)
Q Consensus       182 ---~~d~~~G~TpLh~A------a~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~--A~~~g~~~iv~~Ll~  243 (399)
                         ..|...+.|.||++      ...++.+++++|+++| ++++.+|.+|+||||+  ++..|+.|++++|++
T Consensus       187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence               23332234555533      4557899999999999 8999999999999985  666778999999998

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=170.08  Aligned_cols=133  Identities=14%  Similarity=0.148  Sum_probs=114.3

Q ss_pred             CCCccchHHHHHHHHcC--CHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHhccCCCC
Q psy1036          81 SLKSQELVKLRKLIEKG--NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G--~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~ga~~~  155 (399)
                      ..+..|.||||+|+..+  +.++|+        +|++.|++++...+..|+||||+|+..   ++.+++++|+++|++  
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~--------~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad--  115 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILK--------FLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS--  115 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHH--------HHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC--
Confidence            34677899999999854  899999        888999999885445799999998864   479999999999998  


Q ss_pred             CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCCcHHHH-HHhC
Q psy1036         156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAK--FGSVECVKRLIGCAKIQTSVRNKEGKTPLDV-CFKM  232 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~--~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~-A~~~  232 (399)
                                              +|.+|. .|.||||+|+.  .++.+++++|++.| ++++.+|..|.||||. |+..
T Consensus       116 ------------------------in~~d~-~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859        116 ------------------------ITEEDE-DGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             ------------------------CCCcCC-CCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHhc
Confidence                                    889998 69999999876  46899999999999 8999999999999995 5678


Q ss_pred             CCHHHHHHHHhccCchh
Q psy1036         233 PSVDSMGPLSTKLTPTK  249 (399)
Q Consensus       233 g~~~iv~~Ll~~~~~~~  249 (399)
                      ++.+++++|++.+....
T Consensus       170 ~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        170 SDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            89999999998875443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=183.73  Aligned_cols=153  Identities=18%  Similarity=0.081  Sum_probs=127.2

Q ss_pred             CCccchHHHHHHHH--cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC---
Q psy1036          82 LKSQELVKLRKLIE--KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF---  156 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~--~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~---  156 (399)
                      ....+.|+||.++.  .|+.++|+        +|+++|++++. .  .+.||||+|+..|+.+++++|+++|++...   
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~--------~LI~~GADIn~-~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~  180 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVD--------FMVDHGAVIYK-I--ECLNAYFRGICKKESSVVEFILNCGIPDENDVK  180 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHH--------HHHHCCCCCCC-C--CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc
Confidence            34557899999999  99999999        99999999887 2  358999999999999999999999985211   


Q ss_pred             cccc----c----cCCChhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHH
Q psy1036         157 TNLL----Y----DSDTPSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       157 ~~l~----~----a~~~~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL  226 (399)
                      .++.    +    .+......+  .+++..|+++|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+|||
T Consensus       181 ~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~-~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpL  258 (437)
T PHA02795        181 LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA-GGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCL  258 (437)
T ss_pred             chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHH
Confidence            1111    1    111222333  677778999999999 6999999999999999999999999 99999999999999


Q ss_pred             HHHHhCC--------CHHHHHHHHhccCc
Q psy1036         227 DVCFKMP--------SVDSMGPLSTKLTP  247 (399)
Q Consensus       227 ~~A~~~g--------~~~iv~~Ll~~~~~  247 (399)
                      |+|+.+|        +.++++.|+++...
T Consensus       259 h~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        259 DVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            9999998        46999999987643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=4e-20  Score=188.80  Aligned_cols=287  Identities=13%  Similarity=0.104  Sum_probs=176.0

Q ss_pred             CCCCccchHHHHHHHHcC--CHHHHHHHHhhCC-----------------------------hhhhh-CCCCCcccCC--
Q psy1036          80 KSLKSQELVKLRKLIEKG--NLADVRKLVWDNP-----------------------------RYLVS-SGDFPTILHE--  125 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G--~~~~v~~Ll~~~p-----------------------------~~Ll~-~g~~~~~~~d--  125 (399)
                      ...+..|+||||+|+..|  +.++|+.|++...                             ++|+. .+.+++...+  
T Consensus        71 n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~  150 (672)
T PHA02730         71 LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY  150 (672)
T ss_pred             cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh
Confidence            344666777777777755  5777776665511                             46775 5566665422  


Q ss_pred             --CCCCcHHHHHHHcCCHHHHHHHHhccCCCC-C------------ccccc----c---C-CChhHHHHHHhhhccCCCC
Q psy1036         126 --GCRYNALHVSTKAVNPAMTEMLLEIIGNPA-F------------TNLLY----D---S-DTPSYIERSDILLDLYVNT  182 (399)
Q Consensus       126 --~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~-~------------~~l~~----a---~-~~~~~~~~~~~~~~~~vn~  182 (399)
                        +.|.+|+++|+..++++||++|+++|++.. .            +++++    .   . .....+..+++..|+++|.
T Consensus       151 ~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~  230 (672)
T PHA02730        151 IHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHG  230 (672)
T ss_pred             ccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCC
Confidence              578999999999999999999999999863 1            11111    1   0 1111222788899999999


Q ss_pred             CCCCCCchHHHH--HHHcCCHHHHHHHHh--------------------------------CCCCCccc-----------
Q psy1036         183 PDKALNETPLHF--AAKFGSVECVKRLIG--------------------------------CAKIQTSV-----------  217 (399)
Q Consensus       183 ~d~~~G~TpLh~--Aa~~g~~~iv~~LL~--------------------------------~g~a~~~~-----------  217 (399)
                      +|. .|+||||+  |+..|+.|+|++|++                                +| +|+.+           
T Consensus       231 kd~-~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~  308 (672)
T PHA02730        231 RDE-GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYN-VDMEIVNLLIEGRHTL  308 (672)
T ss_pred             CCC-CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCC-cchHHHHHHhhccCcc
Confidence            999 69999995  556678999999999                                67 77766           


Q ss_pred             ---------CCCCCCc---------------------HHHHHHhCC---CHHHHHHHHhccCchhhcccCCCCccchhhh
Q psy1036         218 ---------RNKEGKT---------------------PLDVCFKMP---SVDSMGPLSTKLTPTKVATKSEGTEEGERVF  264 (399)
Q Consensus       218 ---------~d~~G~T---------------------pL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  264 (399)
                               .|..|.+                     -||.=.+.+   +.++++.|++.+.....  +..| ...+|.+
T Consensus       309 ~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G-~TpLH~A  385 (672)
T PHA02730        309 IDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDN-NYPLHDY  385 (672)
T ss_pred             hhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCC-CcHHHHH
Confidence                     5666654                     444444444   58888888888865443  2222 2444443


Q ss_pred             hch------HHHHHHHHHhhccc--cccc-cChHHHHH---HHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccc
Q psy1036         265 DNK------EEALLFIKKNKKIR--FKSF-RNFQDAQN---FAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAA  332 (399)
Q Consensus       265 ~~~------~~~l~~~~~~k~~r--~~~~-~~~~~a~~---~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~  332 (399)
                      ...      .+..+.+-. .++.  ...- .....+..   ++....+.+               .....-...+..+ .
T Consensus       386 a~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~---------------~~~e~~~~~ivk~-L  448 (672)
T PHA02730        386 FVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFNNCGY---------------HCYETILIDVFDI-L  448 (672)
T ss_pred             HHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhccccc---------------cccchhHHHHHHH-H
Confidence            322      244444433 2221  1100 00000000   000000000               0000000011222 2


Q ss_pred             cCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCC-CchhHHHHhhc
Q psy1036         333 AEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHVVCS  388 (399)
Q Consensus       333 ~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~-d~~~~l~~~~~  388 (399)
                      ...+......+..+.||||.|+..|+.++|+.|+..||++|..+. ++.|.||.|..
T Consensus       449 Is~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        449 SKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             HhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            233444556667788999999999999999999999999999986 68999998864

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=163.76  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=112.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHH---HHHHHhccCCCCCccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM---TEMLLEIIGNPAFTNL  159 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~i---v~~Ll~~ga~~~~~~l  159 (399)
                      +.++.++||.||+.|+++.+.+++    ++|++.|...+. .+..|+||||+||..|+.++   +++|++.|++      
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~----~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------   85 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVA----PFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD------   85 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHH----HHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC------
Confidence            456668999999999996655444    156677766665 46689999999999998654   8999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~-~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                          +|.+|...|+||||+|+..|+.+++++|+. .| ++++.+|..|+||||+|+..++.+++
T Consensus        86 --------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         86 --------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             --------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHHHcCCHHHH
Confidence                                788873259999999999999999999995 78 99999999999999999999999999


Q ss_pred             HHHHhccCc
Q psy1036         239 GPLSTKLTP  247 (399)
Q Consensus       239 ~~Ll~~~~~  247 (399)
                      ++|++.+..
T Consensus       145 ~~Ll~~ga~  153 (166)
T PHA02743        145 EILRANGAV  153 (166)
T ss_pred             HHHHHcCCC
Confidence            999988743

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=7.1e-20  Score=190.63  Aligned_cols=287  Identities=12%  Similarity=0.021  Sum_probs=181.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHhccCCCC----------
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST--KAVNPAMTEMLLEIIGNPA----------  155 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa--~~g~~~iv~~Ll~~ga~~~----------  155 (399)
                      +++|+|+..|+.++|+        +|+++|++++. ++..|+||||+|+  ..|+.+++++|+++|++.+          
T Consensus       105 ~~~~~a~~~~~~e~vk--------~Ll~~Gadin~-~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~  175 (661)
T PHA02917        105 IFSYMKSKNVDVDLIK--------VLVEHGFDLSV-KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGY  175 (661)
T ss_pred             hHHHHHhhcCCHHHHH--------HHHHcCCCCCc-cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccc
Confidence            4667777788888888        89999999998 5778999999654  4789999999999999853          


Q ss_pred             ----------CccccccCCC----------hhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCH--HHHHHHHhCC
Q psy1036         156 ----------FTNLLYDSDT----------PSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSV--ECVKRLIGCA  211 (399)
Q Consensus       156 ----------~~~l~~a~~~----------~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~--~iv~~LL~~g  211 (399)
                                .+++++++..          ..+.+  .+++..|+++|..|. .|+||||+|+..|+.  ++|++|++ |
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g  253 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-G  253 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-C
Confidence                      2677776531          12333  677788999999998 699999999999985  79999986 7


Q ss_pred             CCCcc----cCCCCCCcHHHHHHh-------C--CCHHHHHHHHhccCchhh-----cccCCCCccch------------
Q psy1036         212 KIQTS----VRNKEGKTPLDVCFK-------M--PSVDSMGPLSTKLTPTKV-----ATKSEGTEEGE------------  261 (399)
Q Consensus       212 ~a~~~----~~d~~G~TpL~~A~~-------~--g~~~iv~~Ll~~~~~~~~-----~~~~~~~~~~~------------  261 (399)
                       ++++    ..|..|.||+++|+.       .  .+.++++.|++.+.....     +... +..+.+            
T Consensus       254 -~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  331 (661)
T PHA02917        254 -IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWR-NDKETISLILKTMNSDVL  331 (661)
T ss_pred             -CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccc-cchHHHHHHHHHhchHHH
Confidence             6664    567788999999983       1  178999999999843211     1111 111111            


Q ss_pred             -hhhhc----hHHHHHHHHHh--hccccc-----c----cc-ChHHHHHHHh-cCCccCC-CCCCCCCCCCCccccCC--
Q psy1036         262 -RVFDN----KEEALLFIKKN--KKIRFK-----S----FR-NFQDAQNFAY-HGSCGVN-TSLLEAPASPSTVTAAD--  320 (399)
Q Consensus       262 -~~~~~----~~~~l~~~~~~--k~~r~~-----~----~~-~~~~a~~~a~-~~~~~~~-~s~~~~~~~~s~~~~~~--  320 (399)
                       +.+..    ......+++.+  .|+...     .    +. .......... .|..... ..-..||+......+..  
T Consensus       332 ~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~  411 (661)
T PHA02917        332 QHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCY  411 (661)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccch
Confidence             00000    00012233332  222111     1    11 1112222222 2311111 11134444321000000  


Q ss_pred             -------CCCCcc---------cccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHH
Q psy1036         321 -------PSALPQ---------VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH  384 (399)
Q Consensus       321 -------~~~~~~---------~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~  384 (399)
                             ..++.+         +..+ ....+......+..+.||||.|+..|+.++++.|+..|++++..+..|.||||
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~v~~-Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~  490 (661)
T PHA02917        412 NFYTYTYKKGLCDMSYACPILSTINI-CLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIA  490 (661)
T ss_pred             hhhhhhhhhccchhhhhhhhHHHHHH-HHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence                   000001         1111 22334445566677789999999999999999999999999999999999999


Q ss_pred             Hhhc
Q psy1036         385 VVCS  388 (399)
Q Consensus       385 ~~~~  388 (399)
                      .|+.
T Consensus       491 ~A~~  494 (661)
T PHA02917        491 IAIN  494 (661)
T ss_pred             HHHH
Confidence            9985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=4e-20  Score=198.72  Aligned_cols=173  Identities=21%  Similarity=0.190  Sum_probs=102.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                      +.++||.||..|+.++++.|++.|++                          +|..|. .|+||||+||..|+.++|++|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d--------------------------~n~~d~-~G~TpLh~Aa~~g~~~~v~~L  577 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLD--------------------------PDIGDS-KGRTPLHIAASKGYEDCVLVL  577 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCC--------------------------CCCCCC-CCCCHHHHHHHcChHHHHHHH
Confidence            45566666666666666666666665                          566666 466666666666666666666


Q ss_pred             HhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccC
Q psy1036         208 IGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRN  287 (399)
Q Consensus       208 L~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~  287 (399)
                      +++| ++++.+|.+|+||||+|+..|+.++++.|++.......  ..++  ..++ .....+.+++++.           
T Consensus       578 l~~g-adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~--~~L~-~Aa~~g~~~~v~~-----------  640 (823)
T PLN03192        578 LKHA-CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAG--DLLC-TAAKRNDLTAMKE-----------  640 (823)
T ss_pred             HhcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCc--hHHH-HHHHhCCHHHHHH-----------
Confidence            6666 66666666666666666666666666666654321110  0000  0010 0001111111111           


Q ss_pred             hHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhh
Q psy1036         288 FQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVW  367 (399)
Q Consensus       288 ~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~  367 (399)
                            +.+.|                                      .+....+..+.||||.|+++||.++|+.|+.
T Consensus       641 ------Ll~~G--------------------------------------adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        641 ------LLKQG--------------------------------------LNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             ------HHHCC--------------------------------------CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence                  00011                                      1122334567799999999999999999999


Q ss_pred             cCCCeeecCC---CchhHHHHhhc
Q psy1036         368 DNPRYLVSSG---DFPTILHVVCS  388 (399)
Q Consensus       368 ~~~~~~~~s~---d~~~~l~~~~~  388 (399)
                      .||+++..+.   .+|+.|.+..+
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999855   45666666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=6.4e-20  Score=186.64  Aligned_cols=126  Identities=18%  Similarity=0.185  Sum_probs=110.4

Q ss_pred             cchHHHHHHH--HcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHhccCCCCCc
Q psy1036          85 QELVKLRKLI--EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA-----VNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        85 ~~~T~Lh~Aa--~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~-----g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .+.|+++.+.  ..++.++|+        +|+++|++++. .+..|.||||+|+..     ++.+++++|+++|++    
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~--------~Ll~~Gadvn~-~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad----  101 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVK--------LFINLGANVNG-LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD----  101 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHH--------HHHHCCCCCCC-CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC----
Confidence            3556655444  456899999        89999999987 477899999998864     679999999999998    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC---CHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG---SVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g---~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                                            +|.+|. .|+||||+|+..+   +.+++++|+++| ++++.+|..|.||||+|++.++
T Consensus       102 ----------------------iN~~d~-~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        102 ----------------------INKKNS-DGETPLYCLLSNGYINNLEILLFMIENG-ADTTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             ----------------------CCCCCC-CcCcHHHHHHHcCCcChHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcCC
Confidence                                  899998 6999999999976   789999999999 9999999999999999999998


Q ss_pred             ---HHHHHHHHhccCc
Q psy1036         235 ---VDSMGPLSTKLTP  247 (399)
Q Consensus       235 ---~~iv~~Ll~~~~~  247 (399)
                         .+++++|++++..
T Consensus       158 ~~~~~vv~~Ll~~gad  173 (489)
T PHA02798        158 HIDIEIIKLLLEKGVD  173 (489)
T ss_pred             cchHHHHHHHHHhCCC
Confidence               9999999998744

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=6.6e-20  Score=186.76  Aligned_cols=170  Identities=19%  Similarity=0.162  Sum_probs=121.5

Q ss_pred             cchhhhhcCCCCCCCCCccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHc--CCH
Q psy1036          67 VSSLAAAEKPSPFKSLKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA--VNP  141 (399)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~--g~~  141 (399)
                      +...+..... .....+..|.||||.|+..   |+.++|+        +|+++|++++...+..|+||||+|+..  ++.
T Consensus        90 iv~~Ll~~Ga-din~~d~~g~tpL~~a~~~~~~~~~eiv~--------~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~  160 (494)
T PHA02989         90 IVKLLLKFGA-DINLKTFNGVSPIVCFIYNSNINNCDMLR--------FLLSKGINVNDVKNSRGYNLLHMYLESFSVKK  160 (494)
T ss_pred             HHHHHHHCCC-CCCCCCCCCCcHHHHHHHhcccCcHHHHH--------HHHHCCCCcccccCCCCCCHHHHHHHhccCCH
Confidence            4444443332 3445566778888877654   5678888        777788777322566788888877653  577


Q ss_pred             HHHHHHHhccCCCC-------CccccccCCCh---hH---------------------------------------HH-H
Q psy1036         142 AMTEMLLEIIGNPA-------FTNLLYDSDTP---SY---------------------------------------IE-R  171 (399)
Q Consensus       142 ~iv~~Ll~~ga~~~-------~~~l~~a~~~~---~~---------------------------------------~~-~  171 (399)
                      +++++|+++|+++.       .++++++....   ..                                       .. .
T Consensus       161 ~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        161 DVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHH
Confidence            88888888777632       23333221100   00                                       00 1


Q ss_pred             HHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         172 SDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       172 ~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                      ..+..++++|.+|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+..|+.++++.|+++.+.
T Consensus       241 ~~l~~~advn~~d~-~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        241 NFILKYIKINKKDK-KGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             HHHHhCCCCCCCCC-CCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            12334577888888 6999999999999999999999999 99999999999999999999999999999987643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=162.06  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCc----ccCCCCCCcHHHHHHHcCCH---HHHHHHHhccCCC
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT----ILHEGCRYNALHVSTKAVNP---AMTEMLLEIIGNP  154 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~----~~~d~~g~T~LH~Aa~~g~~---~iv~~Ll~~ga~~  154 (399)
                      ++..|.||||+||+.|+...+.        .......+.+    ...+..|+||||+|+..|+.   +++++|++.|++ 
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~--------~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-   83 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLL--------AFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-   83 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHH--------HHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-
Confidence            4678999999999999842221        1111111110    11356799999999999987   468899999987 


Q ss_pred             CCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCcHHHHHHhCC
Q psy1036         155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVCFKMP  233 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~-g~a~~~~~d~~G~TpL~~A~~~g  233 (399)
                                               +|.+|...|+||||+|+..|+.+++++|+.. | ++++.+|..|+||||+|+..|
T Consensus        84 -------------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-~d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         84 -------------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPG-VNMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             -------------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCCCCHHHHHHHcC
Confidence                                     7888732599999999999999999999985 7 999999999999999999999


Q ss_pred             CHHHHHHHHhccC
Q psy1036         234 SVDSMGPLSTKLT  246 (399)
Q Consensus       234 ~~~iv~~Ll~~~~  246 (399)
                      +.++++.|+..+.
T Consensus       138 ~~~i~~~Ll~~ga  150 (154)
T PHA02736        138 DAKMMNILRAKGA  150 (154)
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999998763

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=8.7e-20  Score=171.62  Aligned_cols=125  Identities=15%  Similarity=0.190  Sum_probs=109.6

Q ss_pred             CccchH-HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc---CCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          83 KSQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL---HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        83 ~~~~~T-~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~---~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +..++| +||.|+..|+.++|+        +|++.|++++..   .+..|.||||+|+..|+.+++++|+++|++     
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk--------~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-----   95 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIID--------AILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-----   95 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHH--------HHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            455655 788888899999999        888999998873   245799999999999999999999999998     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                           +|.++...|.||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+..++.+++
T Consensus        96 ---------------------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884         96 ---------------------VNRYAEEAKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             ---------------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhHH
Confidence                                 78764326999999999999999999999999 99999999999999999998887776


Q ss_pred             HHHH
Q psy1036         239 GPLS  242 (399)
Q Consensus       239 ~~Ll  242 (399)
                      ..+.
T Consensus       154 ~~~~  157 (300)
T PHA02884        154 FMIC  157 (300)
T ss_pred             HHhc
Confidence            5554

>KOG0502|consensus

Probab=99.81  E-value=5.2e-20  Score=159.02  Aligned_cols=151  Identities=17%  Similarity=0.181  Sum_probs=99.3

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ..++..+++|+.+++...+++.+.        .+.+  +.+|. .|..|.|||.||+.+|++.+|++||+.|++++....
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~--------~~~~--n~VN~-~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk  191 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVD--------LLVN--NKVNA-CDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK  191 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHH--------HHhh--ccccC-ccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh
Confidence            345566777888888777777765        2222  22333 366788888888888888888888888887543221


Q ss_pred             -----cccCCChhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhC
Q psy1036         160 -----LYDSDTPSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKM  232 (399)
Q Consensus       160 -----~~a~~~~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~  232 (399)
                           +..+..+++.+  .+++..+.++|..|- +|-|||-||++.||.+||+.||..| ++++..+..|.+++++|+..
T Consensus       192 ~resALsLAt~ggytdiV~lLL~r~vdVNvyDw-NGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLTREVDVNVYDW-NGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHhcCCCcceecc-CCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHh
Confidence                 11122333333  344445556777776 6777777777777777777777777 77777777777777777777


Q ss_pred             CCHHHHHHHHhc
Q psy1036         233 PSVDSMGPLSTK  244 (399)
Q Consensus       233 g~~~iv~~Ll~~  244 (399)
                      |+. +++.++++
T Consensus       270 Gyr-~Vqqvie~  280 (296)
T KOG0502|consen  270 GYR-IVQQVIEK  280 (296)
T ss_pred             hhH-HHHHHHHH
Confidence            776 66666654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=4.2e-19  Score=173.51  Aligned_cols=170  Identities=12%  Similarity=-0.029  Sum_probs=143.1

Q ss_pred             HHHHcCCHHHHHHHHhhCChhhhhCCCCCc------ccCCCCCCcHHHHHHH--cCCHHHHHHHHhccCCCCCccccccC
Q psy1036          92 KLIEKGNLADVRKLVWDNPRYLVSSGDFPT------ILHEGCRYNALHVSTK--AVNPAMTEMLLEIIGNPAFTNLLYDS  163 (399)
Q Consensus        92 ~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~------~~~d~~g~T~LH~Aa~--~g~~~iv~~Ll~~ga~~~~~~l~~a~  163 (399)
                      .|+..+..++++        +|+.+|++++      . ++..++|+||+++.  .|+.++|++|+++|++          
T Consensus        83 ~~~~~~~k~~~~--------~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD----------  143 (437)
T PHA02795         83 LFAYITYKDIIS--------ALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV----------  143 (437)
T ss_pred             HHhhcchHHHHH--------HHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHHHHHHCCCC----------
Confidence            899999999999        8999999877      4 45579999999999  8999999999999998          


Q ss_pred             CChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCc-ccC-----CCCCCcHHHHHHhCCCHHH
Q psy1036         164 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT-SVR-----NKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       164 ~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~-~~~-----d~~G~TpL~~A~~~g~~~i  237 (399)
                                      +|..   .+.||||+|+..|+.++|++|+++| ++. +..     +..|.||+|.|...++.++
T Consensus       144 ----------------In~~---~~~t~lh~A~~~~~~eIVk~Lls~G-a~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        144 ----------------IYKI---ECLNAYFRGICKKESSVVEFILNCG-IPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             ----------------CCCC---CCCCHHHHHHHcCcHHHHHHHHhcC-CcccccccchhhhhhccchhHHHHhcCHHHH
Confidence                            6663   3689999999999999999999999 533 222     2347889999999999999


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      +++|++.+...                                                                     
T Consensus       204 ve~LIs~GADI---------------------------------------------------------------------  214 (437)
T PHA02795        204 YKLCIPYIEDI---------------------------------------------------------------------  214 (437)
T ss_pred             HHHHHhCcCCc---------------------------------------------------------------------
Confidence            99988653100                                                                     


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                                            ...+..+.||||.|++.|+.++|+.|++.||++++.+.+|.||||.|+..++
T Consensus       215 ----------------------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        215 ----------------------NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ----------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence                                  0112345689999999999999999999999999999999999999998764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=182.63  Aligned_cols=151  Identities=13%  Similarity=0.102  Sum_probs=117.1

Q ss_pred             CccchHHHHHHH-HcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHH-cCCHHHHHHHHhccCCC------
Q psy1036          83 KSQELVKLRKLI-EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTK-AVNPAMTEMLLEIIGNP------  154 (399)
Q Consensus        83 ~~~~~T~Lh~Aa-~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~-~g~~~iv~~Ll~~ga~~------  154 (399)
                      +.+|.+++|.-| ..|++++|+        +|+.+|++++...+ .|.|+||+|+. .|+.+++++|++.|++.      
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk--------~LI~~GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~  138 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLK--------LLISKGLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQY  138 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHH--------HHHHcCCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCccccccc
Confidence            556667887655 589999999        89999999998644 58999999976 69999999999999873      


Q ss_pred             CCccccccCCChhHHH----HHHhhhccCCCCCCCCCCchHHHHHHHcC-------CHHHHHHHHhCCCCCcccCCCCCC
Q psy1036         155 AFTNLLYDSDTPSYIE----RSDILLDLYVNTPDKALNETPLHFAAKFG-------SVECVKRLIGCAKIQTSVRNKEGK  223 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~----~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g-------~~~iv~~LL~~g~a~~~~~d~~G~  223 (399)
                      ++++++..........    .-....+..+|..|. .|.||||+|+..+       +.+++++|+++| ++++.+|..|.
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-~~~~~~d~~g~  216 (631)
T PHA02792        139 GYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR-MGKTVLYYYIITRSQDGYATSLDVINYLISHE-KEMRYYTYREH  216 (631)
T ss_pred             CcchhhhhcccccccchhhhccccccccccccCCC-CCCchHHHHHhhCCcccccCCHHHHHHHHhCC-CCcCccCCCCC
Confidence            2333332222111111    000111334678888 6999999999999       899999999999 99999999999


Q ss_pred             cHHHHHHhCC--CHHHHHHHHhc
Q psy1036         224 TPLDVCFKMP--SVDSMGPLSTK  244 (399)
Q Consensus       224 TpL~~A~~~g--~~~iv~~Ll~~  244 (399)
                      ||||+|+.+.  ..|++++|+..
T Consensus       217 t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        217 TTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             hHHHHHHHcccchHHHHHHHHhc
Confidence            9999999999  88999988753

>KOG0512|consensus

Probab=99.79  E-value=5.5e-19  Score=147.43  Aligned_cols=142  Identities=20%  Similarity=0.214  Sum_probs=111.4

Q ss_pred             CCCcccchhhhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCH
Q psy1036          62 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP  141 (399)
Q Consensus        62 s~~~g~~~~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~  141 (399)
                      |...+.++.+-.+.    +.+..+-.--+.+|+..+.+..|+.||...+       ..+|. +|..||||||.|+++||.
T Consensus        43 S~W~ddsdeleE~d----k~me~dp~rl~lwaae~nrl~eV~~lL~e~a-------n~vNt-rD~D~YTpLHRAaYn~h~  110 (228)
T KOG0512|consen   43 SLWVDDSEELEEQD----KNMEKDPIRLLLWAAEKNRLTEVQRLLSEKA-------NHVNT-RDEDEYTPLHRAAYNGHL  110 (228)
T ss_pred             eeecCCcHHHHhhc----cCcccCHHHHHHHHHhhccHHHHHHHHHhcc-------ccccc-cccccccHHHHHHhcCch
Confidence            44455554444333    2223333446899999999999996554433       22333 677899999999999999


Q ss_pred             HHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC
Q psy1036         142 AMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKE  221 (399)
Q Consensus       142 ~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~  221 (399)
                      +||+.|+..|++                          .+.+.. .||||||-||.+++.+|+-+||++| +|+|...+.
T Consensus       111 div~~ll~~gAn--------------------------~~a~T~-~GWTPLhSAckWnN~~va~~LLqhg-aDVnA~t~g  162 (228)
T KOG0512|consen  111 DIVHELLLSGAN--------------------------KEAKTN-EGWTPLHSACKWNNFEVAGRLLQHG-ADVNAQTKG  162 (228)
T ss_pred             HHHHHHHHccCC--------------------------cccccc-cCccchhhhhcccchhHHHHHHhcc-Ccccccccc
Confidence            999999999998                          678887 6999999999999999999999999 999999999


Q ss_pred             CCcHHHHHHhCCCHH-HHHHHHh
Q psy1036         222 GKTPLDVCFKMPSVD-SMGPLST  243 (399)
Q Consensus       222 G~TpL~~A~~~g~~~-iv~~Ll~  243 (399)
                      .+||||+||...+.. .+.+|+.
T Consensus       163 ~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  163 LLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             cchhhHHhhcccchHHHHHHHhh
Confidence            999999999877654 4445543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.78  E-value=1.6e-18  Score=186.44  Aligned_cols=151  Identities=19%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------CCccccc
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------AFTNLLY  161 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------~~~~l~~  161 (399)
                      ++||.||..|+.++++        .|++.|.+++. .|..|+||||+||..|+.+++++|+++|++.      +.+++++
T Consensus       527 ~~L~~Aa~~g~~~~l~--------~Ll~~G~d~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~  597 (823)
T PLN03192        527 SNLLTVASTGNAALLE--------ELLKAKLDPDI-GDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWN  597 (823)
T ss_pred             hHHHHHHHcCCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            4566666666666666        55555655555 3555666666666666666666666666552      2334444


Q ss_pred             cCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHH
Q psy1036         162 DSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGP  240 (399)
Q Consensus       162 a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~  240 (399)
                      ++..+.... .+++..+...+  .. .|.++||+||..|+.+++++|+++| ++++.+|.+|+||||+|+..|+.+++++
T Consensus       598 A~~~g~~~iv~~L~~~~~~~~--~~-~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        598 AISAKHHKIFRILYHFASISD--PH-AAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcccC--cc-cCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            443322211 22222222122  22 4789999999999999999999999 9999999999999999999999999999


Q ss_pred             HHhccCchhhc
Q psy1036         241 LSTKLTPTKVA  251 (399)
Q Consensus       241 Ll~~~~~~~~~  251 (399)
                      |++.+......
T Consensus       674 Ll~~GAdv~~~  684 (823)
T PLN03192        674 LIMNGADVDKA  684 (823)
T ss_pred             HHHcCCCCCCC
Confidence            99988654443

>KOG0505|consensus

Probab=99.78  E-value=8.4e-19  Score=169.47  Aligned_cols=165  Identities=19%  Similarity=0.201  Sum_probs=133.6

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC---
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF---  156 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~---  156 (399)
                      ..-+.+|+|+||.+|...+.++|+        +|++.|++++. .|..||||||.|+..||..++++|+.+|++...   
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~--------~l~e~ga~Vn~-~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNs  137 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVK--------FLVENGANVNA-QDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS  137 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHH--------HHHHhcCCccc-cccccCCcchhhcccccHHHHHHHHHhhhhhhhccC
Confidence            556889999999999999999999        99999999998 577899999999999999999999999987111   


Q ss_pred             ---ccccccC-----------------C--------ChhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         157 ---TNLLYDS-----------------D--------TPSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       157 ---~~l~~a~-----------------~--------~~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                         .+.-.+.                 .        ...++.  ...+..+.+.+..+. .|.|.||.|+..|..++.++
T Consensus       138 dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~-rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  138 DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA-RGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc-ccchHHHHHHhhhHHHHHHH
Confidence               1110000                 0        001111  222235677888888 59999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCC
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSE  255 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  255 (399)
                      ||++| .+++++|.+||||||.|+.+|+.++++.|++.+...+..++.+
T Consensus       217 Ll~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  217 LLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMG  264 (527)
T ss_pred             HHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcC
Confidence            99999 8999999999999999999999999999998886555444443

>KOG0507|consensus

Probab=99.78  E-value=2.6e-18  Score=171.51  Aligned_cols=219  Identities=20%  Similarity=0.150  Sum_probs=163.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|+|+||.||.+|+.++++.|+        +..+-..+. +..|.+|||+|++.|+.++++.|+.++..         
T Consensus        46 d~~gfTalhha~Lng~~~is~lll--------e~ea~ldl~-d~kg~~plhlaaw~g~~e~vkmll~q~d~---------  107 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLL--------DYEALLDLC-DTKGILPLHLAAWNGNLEIVKMLLLQTDI---------  107 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHh--------cchhhhhhh-hccCcceEEehhhcCcchHHHHHHhcccC---------
Confidence            448999999999999999999444        444333332 35789999999999999999999998854         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+.. .|.||||.||+.||.++|.+||.+| +++.++|+.+.|+|++|++.|..+++++|+
T Consensus       108 -----------------~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~t~ldlA~qfgr~~Vvq~ll  168 (854)
T KOG0507|consen  108 -----------------LNAVNI-ENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKETVLDLASRFGRAEVVQMLL  168 (854)
T ss_pred             -----------------CCcccc-cCcCccchhhhhcchHHHHHHHhcC-CCccccCcccccHHHHHHHhhhhHHHHHHh
Confidence                             788887 7999999999999999999999999 999999999999999999999999999999


Q ss_pred             hccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCC
Q psy1036         243 TKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPS  322 (399)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~  322 (399)
                      ++-  ..+.            +      +.    .                   .|     ..+...+-+.++|.++.++
T Consensus       169 ~~~--~~~~------------~------~~----~-------------------~~-----~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  169 QKK--FPVQ------------S------SL----R-------------------VG-----DIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhc--cchh------------h------cc----c-------------------CC-----CCCCCCCCcCCcchhhhcc
Confidence            861  1111            0      00    0                   01     0011122233456666666


Q ss_pred             CCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         323 ALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       323 ~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                      +--.+..  +.+.+.+.+. ...+.|+||-|.-.|-+++|+.|+.-|=..-+..+-++|.|..-+.+
T Consensus       201 h~~~~~~--ll~ag~din~-~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  201 HVECMQA--LLEAGFDINY-TTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHHHH--HHhcCCCccc-ccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            5222222  2333322221 24567999999999999999999999988888899999988765543

>KOG0514|consensus

Probab=99.78  E-value=3.4e-19  Score=164.36  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=119.0

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCC-CCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHhccCCC
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKA-----VNPAMTEMLLEIIGNP  154 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g-~~~~~~~d~~g~T~LH~Aa~~-----g~~~iv~~Ll~~ga~~  154 (399)
                      -.+..|.|+||+|+..+++++|+        .||+.| .+++. ++.-||||+++|+..     .+.++|..|.+.|.  
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~--------~LLDSgvC~VD~-qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--  331 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVS--------ILLDSGVCDVDQ-QNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--  331 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHH--------HHhccCcccccc-cccccccHHHHHHHHhhcchhhHHHHHHHHhccC--
Confidence            34678899999999999999999        777888 44444 577899999998864     46788998888764  


Q ss_pred             CCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                                               ||++-...|.|+|++|+.+|+.++|+.||..| +|+|++|.+|.|+|++||++||
T Consensus       332 -------------------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  332 -------------------------VNAKASQHGQTALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGH  385 (452)
T ss_pred             -------------------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhCh
Confidence                                     67765546999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhccC-chhhcccCCCCccchhhhhchHHH
Q psy1036         235 VDSMGPLSTKLT-PTKVATKSEGTEEGERVFDNKEEA  270 (399)
Q Consensus       235 ~~iv~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
                      .||+++||..-. ...+..+++.+...+++-....+.
T Consensus       386 kEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  386 KEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             HHHHHHHhccCcccceeecCCCchhhhhHHhcCchHH
Confidence            999999987642 233344444444444444444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=3.4e-18  Score=182.46  Aligned_cols=154  Identities=24%  Similarity=0.157  Sum_probs=119.2

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhC--CCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHhcc--CCCCCcc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS--GDFPTILHEGCRYNALH-VSTKAVNPAMTEMLLEII--GNPAFTN  158 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~--g~~~~~~~d~~g~T~LH-~Aa~~g~~~iv~~Ll~~g--a~~~~~~  158 (399)
                      .++..+|+.||+.|+.+.|+        .+++.  +.+++. .|..|+|||| .|+..++.+++++|++.|  ...+.++
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~--------~lL~~~~~~~in~-~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~   85 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVY--------RDLEEPKKLNINC-PDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTL   85 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHH--------HHhccccccCCCC-cCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHH
Confidence            45678999999999999999        44455  566665 4678999999 888889999999999999  5577788


Q ss_pred             ccccCCC--hhHHHHHHhhhccC--------CCC----CCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC-----
Q psy1036         159 LLYDSDT--PSYIERSDILLDLY--------VNT----PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-----  219 (399)
Q Consensus       159 l~~a~~~--~~~~~~~~~~~~~~--------vn~----~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d-----  219 (399)
                      +|.++..  ......+.......        ++.    .+. .|.||||+||..|+.++|++|+++| ++++.++     
T Consensus        86 Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~-~G~TpLhlAa~~~~~eiVklLL~~G-Adv~~~~~~~~~  163 (743)
T TIGR00870        86 LHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT-PGITALHLAAHRQNYEIVKLLLERG-ASVPARACGDFF  163 (743)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccC-CCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCcCCchh
Confidence            8877652  22222222222211        111    223 5999999999999999999999999 8998764     


Q ss_pred             ---------CCCCcHHHHHHhCCCHHHHHHHHhccCch
Q psy1036         220 ---------KEGKTPLDVCFKMPSVDSMGPLSTKLTPT  248 (399)
Q Consensus       220 ---------~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~  248 (399)
                               ..|+||||+|+..|+.+++++|++.....
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence                     36999999999999999999999877533

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.77  E-value=1.4e-18  Score=173.31  Aligned_cols=227  Identities=17%  Similarity=0.138  Sum_probs=162.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCC----hhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccC
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNP----RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  163 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p----~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~  163 (399)
                      +-|..|+..|+.+.|..+|+...    ..+.....+....+|..|+|+||.||.+|+..++++|++..+-          
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~----------   74 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL----------   74 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh----------
Confidence            35889999999999998886621    1121222222234688999999999999999999999998775          


Q ss_pred             CChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         164 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       164 ~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                      ++..|. .|.+|||+|++.|+.++|++||.++ ..+|+.+..|.||||.|+++||.+++.+|++
T Consensus        75 ----------------ldl~d~-kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~  136 (854)
T KOG0507|consen   75 ----------------LDLCDT-KGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLK  136 (854)
T ss_pred             ----------------hhhhhc-cCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHh
Confidence                            677787 6999999999999999999999999 8999999999999999999999999999999


Q ss_pred             ccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCC
Q psy1036         244 KLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA  323 (399)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~  323 (399)
                      +...-.+...++++-..++.   +-+..+++...-..   .|.              .- .   +.+      -|     
T Consensus       137 ~~adp~i~nns~~t~ldlA~---qfgr~~Vvq~ll~~---~~~--------------~~-~---~~~------~~-----  181 (854)
T KOG0507|consen  137 KNADPFIRNNSKETVLDLAS---RFGRAEVVQMLLQK---KFP--------------VQ-S---SLR------VG-----  181 (854)
T ss_pred             cCCCccccCcccccHHHHHH---HhhhhHHHHHHhhh---ccc--------------hh-h---ccc------CC-----
Confidence            98554444333222222211   22223333221110   010              00 0   000      00     


Q ss_pred             CcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccccCcc
Q psy1036         324 LPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGAS  394 (399)
Q Consensus       324 ~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~~~~  394 (399)
                        .+.             -.....++||+|..+||.++++.|...|=++|.+-.|| |.|||| .+|+++.
T Consensus       182 --~~~-------------~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talhea-alcgk~e  235 (854)
T KOG0507|consen  182 --DIK-------------RPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEA-ALCGKAE  235 (854)
T ss_pred             --CCC-------------CCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhH-hhcCcch
Confidence              000             01223468999999999999999999999999996666 889998 5787764

>KOG0512|consensus

Probab=99.76  E-value=3.3e-18  Score=142.84  Aligned_cols=132  Identities=23%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             cchhhhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy1036          67 VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM  146 (399)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~  146 (399)
                      .+..+..++++-+...+.+|.||||.|+.+|++++|+        .|+..|++++...+ .||||||-||..++.+|+.+
T Consensus        78 eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~--------~ll~~gAn~~a~T~-~GWTPLhSAckWnN~~va~~  148 (228)
T KOG0512|consen   78 EVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVH--------ELLLSGANKEAKTN-EGWTPLHSACKWNNFEVAGR  148 (228)
T ss_pred             HHHHHHHhccccccccccccccHHHHHHhcCchHHHH--------HHHHccCCcccccc-cCccchhhhhcccchhHHHH
Confidence            3467788999999999999999999999999999999        77789999998544 79999999999999999999


Q ss_pred             HHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCH-HHHHHHHhCCCCCcccCCCCCCcH
Q psy1036         147 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSV-ECVKRLIGCAKIQTSVRNKEGKTP  225 (399)
Q Consensus       147 Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~-~iv~~LL~~g~a~~~~~d~~G~Tp  225 (399)
                      ||++|++                          ||++.. ..+||||+||...+. ..+++||......+-.+++.+.||
T Consensus       149 LLqhgaD--------------------------VnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta  201 (228)
T KOG0512|consen  149 LLQHGAD--------------------------VNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETA  201 (228)
T ss_pred             HHhccCc--------------------------cccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchH
Confidence            9999998                          899888 589999999987654 456777765558888999999999


Q ss_pred             HHHHHhCCC
Q psy1036         226 LDVCFKMPS  234 (399)
Q Consensus       226 L~~A~~~g~  234 (399)
                      +++|.+-+-
T Consensus       202 ~~iARRT~~  210 (228)
T KOG0512|consen  202 FDIARRTSM  210 (228)
T ss_pred             HHHHHHhhh
Confidence            999987653

>KOG4177|consensus

Probab=99.76  E-value=5.3e-18  Score=179.83  Aligned_cols=255  Identities=19%  Similarity=0.178  Sum_probs=179.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      -.||.||++|+.+.+.        .|++...++.. ..+.|.||+|+|+-+|+.+++++|+..++.              
T Consensus        23 ~~l~~a~r~~~~~~~~--------~l~~~e~~~~~-~sk~~~~pl~~aa~~~~~~v~~~ll~~~a~--------------   79 (1143)
T KOG4177|consen   23 PALHIAARNDDTNAAK--------LLLQNEHNADV-DSKSGFTPLHIAAHYGNENVAELLLNRGAI--------------   79 (1143)
T ss_pred             hHHHHHHhccchhhcc--------cccccccccch-hcccccCHHHHHhhhhhhhhhhhhhccccc--------------
Confidence            3799999999999999        66665544444 233789999999999999999999999987              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                                  ++..+. .|.||||.|+..|+.++++.|+..| +.++.++.+|.||||.|...|+.+++.+|+....+
T Consensus        80 ------------v~~~~~-~~~~plh~a~~~~~a~~v~~ll~~g-a~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~  145 (1143)
T KOG4177|consen   80 ------------VNATAR-NGITPLHVASKRGDAEMVKLLLCRG-AQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAP  145 (1143)
T ss_pred             ------------cCcccc-cCccHHHHHHhhcchhHHHHHHhcc-CchhhcccCCCcchhhhcccccHHHHHHHHHccCC
Confidence                        788887 6999999999999999999999999 89999999999999999999999999999998877


Q ss_pred             hhhcccCCCCccchhhhhchHHHHHHHHHhhcc-cc--cccc--ChHHHHHHHhcC--CccCCCCCCCCCCCCCccccCC
Q psy1036         248 TKVATKSEGTEEGERVFDNKEEALLFIKKNKKI-RF--KSFR--NFQDAQNFAYHG--SCGVNTSLLEAPASPSTVTAAD  320 (399)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~-r~--~~~~--~~~~a~~~a~~~--~~~~~~s~~~~~~~~s~~~~~~  320 (399)
                      ....++++-+....+..   .....++-..+.. ++  ..+.  ......++....  .|..+.+-..+|    .+..+.
T Consensus       146 ~~~k~~~g~t~l~~a~~---~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tp----l~~a~~  218 (1143)
T KOG4177|consen  146 INIKTKNGLSPLHMAAQ---VACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGFTP----LHIACK  218 (1143)
T ss_pred             CcccccCCCCchhhhcc---hhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCCCc----hhhhcc
Confidence            77776665555544322   2222222222111 11  0000  000011111001  111111111222    222222


Q ss_pred             CCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         321 PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       321 ~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                      .+.. .+..+ ...++...+++...++|++|.|...|+.++|.+|+.+++.+++++-.+.|+||+|-+
T Consensus       219 ~nri-~~~eL-ll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~  284 (1143)
T KOG4177|consen  219 KNRI-KVVEL-LLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAAR  284 (1143)
T ss_pred             cccc-ceeee-eeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhc
Confidence            1110 11122 344567788888999999999999999999999999999999999999999999853

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=8.2e-18  Score=130.60  Aligned_cols=89  Identities=31%  Similarity=0.468  Sum_probs=75.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHH
Q psy1036          90 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI  169 (399)
Q Consensus        90 Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~  169 (399)
                      ||+||+.|++++++        +|++.+.+.+.     |.||||+||..|+.+++++|++.|++                
T Consensus         1 L~~A~~~~~~~~~~--------~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~----------------   51 (89)
T PF12796_consen    1 LHIAAQNGNLEILK--------FLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD----------------   51 (89)
T ss_dssp             HHHHHHTTTHHHHH--------HHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC----------------
T ss_pred             CHHHHHcCCHHHHH--------HHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc----------------
Confidence            79999999999999        77777755443     78899999999999999999999887                


Q ss_pred             HHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Q psy1036         170 ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN  219 (399)
Q Consensus       170 ~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d  219 (399)
                                +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|
T Consensus        52 ----------~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   52 ----------INSQDK-NGNTALHYAAENGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             ----------TT-BST-TSSBHHHHHHHTTHHHHHHHHHHTT-T-TTSS-
T ss_pred             ----------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence                      788887 6999999999999999999999999 8988876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.75  E-value=1.8e-18  Score=155.03  Aligned_cols=148  Identities=23%  Similarity=0.243  Sum_probs=118.2

Q ss_pred             HHHHcCCHHHHHHHHhhCChhhhh-CCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHH
Q psy1036          92 KLIEKGNLADVRKLVWDNPRYLVS-SGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE  170 (399)
Q Consensus        92 ~Aa~~G~~~~v~~Ll~~~p~~Ll~-~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~  170 (399)
                      --|+.|+.-.|+        +.++ ...+.|. .|..|++||||||..||..+++.||..|+.                 
T Consensus         6 ~wcregna~qvr--------lwld~tehdln~-gddhgfsplhwaakegh~aivemll~rgar-----------------   59 (448)
T KOG0195|consen    6 GWCREGNAFQVR--------LWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----------------   59 (448)
T ss_pred             hhhhcCCeEEEE--------EEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhcccc-----------------
Confidence            346777766666        3333 3344455 466899999999999999999999999998                 


Q ss_pred             HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhh
Q psy1036         171 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKV  250 (399)
Q Consensus       171 ~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~  250 (399)
                               +|..+. ...||||+||..||.++|+.||++. +|+|..|..|.|||||||..|...+.+-|+..+....+
T Consensus        60 ---------vn~tnm-gddtplhlaaahghrdivqkll~~k-advnavnehgntplhyacfwgydqiaedli~~ga~v~i  128 (448)
T KOG0195|consen   60 ---------VNSTNM-GDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI  128 (448)
T ss_pred             ---------cccccC-CCCcchhhhhhcccHHHHHHHHHHh-cccchhhccCCCchhhhhhhcHHHHHHHHHhccceeee
Confidence                     788877 5789999999999999999999999 99999999999999999999999999999999988888


Q ss_pred             cccCCCCccchhhhhchHHHHHHHHH
Q psy1036         251 ATKSEGTEEGERVFDNKEEALLFIKK  276 (399)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (399)
                      ..+++........-.-++..+++.++
T Consensus       129 cnk~g~tpldkakp~l~~~l~e~aek  154 (448)
T KOG0195|consen  129 CNKKGMTPLDKAKPMLKNTLLEIAEK  154 (448)
T ss_pred             cccCCCCchhhhchHHHHHHHHHHHH
Confidence            88876655443222223344444444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.4e-17  Score=145.00  Aligned_cols=144  Identities=10%  Similarity=0.013  Sum_probs=113.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHH
Q psy1036         117 GDFPTILHEGCRYNALHVSTKAVNP----AMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPL  192 (399)
Q Consensus       117 g~~~~~~~d~~g~T~LH~Aa~~g~~----~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpL  192 (399)
                      |.+++.. +..+.++||+||..|+.    +++++|++.|+.                          ++..|. .|+|||
T Consensus        10 ~~~~~~~-~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~--------------------------~~~~d~-~g~t~L   61 (166)
T PHA02743         10 NLGAVEI-DEDEQNTFLRICRTGNIYELMEVAPFISGDGHL--------------------------LHRYDH-HGRQCT   61 (166)
T ss_pred             chHHhhh-ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh--------------------------hhccCC-CCCcHH
Confidence            3444432 34577899999999998    566677777765                          788888 699999


Q ss_pred             HHHHHcCCHHH---HHHHHhCCCCCcccCC-CCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchH
Q psy1036         193 HFAAKFGSVEC---VKRLIGCAKIQTSVRN-KEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKE  268 (399)
Q Consensus       193 h~Aa~~g~~~i---v~~LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (399)
                      |+|+..|+.++   +++|++.| ++++.+| ..|+||||+|+.+++.+++++|+++.                       
T Consensus        62 h~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~-----------------------  117 (166)
T PHA02743         62 HMVAWYDRANAVMKIELLVNMG-ADINARELGTGNTLLHIAASTKNYELAEWLCRQL-----------------------  117 (166)
T ss_pred             HHHHHhCccCHHHHHHHHHHcC-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc-----------------------
Confidence            99999998654   89999999 9999998 58999999999999999999887421                       


Q ss_pred             HHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHH
Q psy1036         269 EALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELV  348 (399)
Q Consensus       269 ~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t  348 (399)
                                                   |.                                      .....+.++.|
T Consensus       118 -----------------------------ga--------------------------------------d~~~~d~~g~t  130 (166)
T PHA02743        118 -----------------------------GV--------------------------------------NLGAINYQHET  130 (166)
T ss_pred             -----------------------------CC--------------------------------------CccCcCCCCCC
Confidence                                         00                                      00011234578


Q ss_pred             HHHHHHhhcCHHHHHHHhhcCCCeeecCCCc
Q psy1036         349 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDF  379 (399)
Q Consensus       349 ~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~  379 (399)
                      |||+|+..|+..+|+.|+..+++++--.++|
T Consensus       131 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743        131 AYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            9999999999999999999999987665554

>KOG0195|consensus

Probab=99.74  E-value=3.2e-18  Score=153.51  Aligned_cols=112  Identities=26%  Similarity=0.353  Sum_probs=102.4

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      -+..|.+||||||+.|+..+|+        .|+..|+.+|.. +.-..||||+||..||.+||+.||+..++        
T Consensus        30 gddhgfsplhwaakegh~aive--------mll~rgarvn~t-nmgddtplhlaaahghrdivqkll~~kad--------   92 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVE--------MLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSRKAD--------   92 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHH--------HHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHHHhcc--------
Confidence            3567889999999999999999        888999888874 43456999999999999999999999887        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~  230 (399)
                                        +|+.+. .|+|||||||..|+..+++-|+..| +.+++.|++|.|||+.|-
T Consensus        93 ------------------vnavne-hgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   93 ------------------VNAVNE-HGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ------------------cchhhc-cCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhc
Confidence                              899998 7999999999999999999999999 899999999999999883

>KOG0502|consensus

Probab=99.73  E-value=9.4e-18  Score=145.15  Aligned_cols=164  Identities=16%  Similarity=0.153  Sum_probs=126.8

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCC----CC
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN----PA  155 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~----~~  155 (399)
                      ..++.+|+.+++.++-.|+.+.+.        .++.+|...+.. +--+|+|+.+++...+++++..+.+...+    .+
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~s--------ttltN~~rgnev-s~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~G  160 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVS--------TTLTNGARGNEV-SLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFG  160 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceee--------eeecccccCCcc-ccccCChhhHHHHHHHHHHHHHHhhccccCccccC
Confidence            345667999999999999999999        777877666653 44699999999999999998887765433    67


Q ss_pred             CccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         156 FTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                      ++++++++..+.... .+++..|++++...+ ...|+|.+|++.|..+||++||.++ .|+|+-|.+|-|||-||++.+|
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGADPDALGK-YRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPLLYAVRGNH  238 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCceeeeeecCCh
Confidence            778887777665544 666777777777776 4778888888888888888888888 7888888888888888888888


Q ss_pred             HHHHHHHHhccCchhhcccC
Q psy1036         235 VDSMGPLSTKLTPTKVATKS  254 (399)
Q Consensus       235 ~~iv~~Ll~~~~~~~~~~~~  254 (399)
                      .++++.|+..+.........
T Consensus       239 vkcve~Ll~sGAd~t~e~ds  258 (296)
T KOG0502|consen  239 VKCVESLLNSGADVTQEDDS  258 (296)
T ss_pred             HHHHHHHHhcCCCccccccc
Confidence            88888888877544433333

>KOG0514|consensus

Probab=99.71  E-value=1.6e-17  Score=153.43  Aligned_cols=123  Identities=18%  Similarity=0.180  Sum_probs=99.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHc-----
Q psy1036         124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKF-----  198 (399)
Q Consensus       124 ~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~-----  198 (399)
                      .|++|+|+||||+.++++++|+.||+.|..                         ++|.+++ -|.||+++|+..     
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC-------------------------~VD~qNr-AGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVC-------------------------DVDQQNR-AGYTPVMLAALAKLKQP  317 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcc-------------------------ccccccc-ccccHHHHHHHHhhcch
Confidence            578999999999999999999999998874                         4899999 699999999864     


Q ss_pred             CCHHHHHHHHhCCCCCcccCC-CCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHH
Q psy1036         199 GSVECVKRLIGCAKIQTSVRN-KEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFI  274 (399)
Q Consensus       199 g~~~iv~~LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (399)
                      .+.++|.-|...|  ++|++- ..|+|+|++|+.+|+.++++.||.......+...++.+....+.-...++..+++
T Consensus       318 ~d~~vV~~LF~mg--nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  318 ADRTVVERLFKMG--DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             hhHHHHHHHHhcc--CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence            4778999999998  677764 7899999999999999999999999877666655554443333333344444444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.6e-16  Score=127.67  Aligned_cols=123  Identities=28%  Similarity=0.397  Sum_probs=110.9

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||.|+..|+.++++        +|++.|.+.+. .+..|.||||+|+..++.+++++|++.+..         
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~--------~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---------   65 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVK--------LLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---------   65 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHH--------HHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            356889999999999999999        77788876544 466899999999999999999999999875         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       ++..+. .|.||+|+|+..++.+++++|++.+ .+++..|..|.||+++|...++.+++++|+
T Consensus        66 -----------------~~~~~~-~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          66 -----------------VNARDK-DGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -----------------ccccCC-CCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                             677777 6999999999999999999999999 899999999999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02741 hypothetical protein; Provisional

Probab=99.69  E-value=3.3e-16  Score=136.74  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCC----
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS----  200 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~----  200 (399)
                      +..|.||||+||..|+.+++++|+......                    ..+.++|.+|. .|+||||+|+..|+    
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~--------------------~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~   76 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGD--------------------CHAAALNATDD-AGQMCIHIAAEKHEAQLA   76 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccc--------------------hhhhhhhccCC-CCCcHHHHHHHcCChHHH
Confidence            557899999999999999999986532100                    01233788998 69999999999999    


Q ss_pred             HHHHHHHHhCCCCCcccCCC-CCCcHHHHHHhCCCHHHHHHHHhc-cCchhhcccCCCCccchhhhhchHHHHHHHHH
Q psy1036         201 VECVKRLIGCAKIQTSVRNK-EGKTPLDVCFKMPSVDSMGPLSTK-LTPTKVATKSEGTEEGERVFDNKEEALLFIKK  276 (399)
Q Consensus       201 ~~iv~~LL~~g~a~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (399)
                      .+++++|+++| ++++.+|. .|+||||+|+..++.+++++|+.. ..........+.+....+......+..+++..
T Consensus        77 ~~ii~~Ll~~g-adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         77 AEIIDHLIELG-ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             HHHHHHHHHcC-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            58999999999 99999985 999999999999999999999974 44333333333333333334444455555443

>KOG0505|consensus

Probab=99.67  E-value=1.8e-16  Score=153.39  Aligned_cols=117  Identities=28%  Similarity=0.349  Sum_probs=104.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      .+..||..|+++-|+        .|+..|+.++.. +..|.|+||-+|...+.+||++|+++|++               
T Consensus        43 ~~l~A~~~~d~~ev~--------~ll~~ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~ga~---------------   98 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVR--------KLLNRGASPNLC-NVDGLTALHQACIDDNLEMVKFLVENGAN---------------   98 (527)
T ss_pred             HHHhccccccHHHHH--------HHhccCCCcccc-CCccchhHHHHHhcccHHHHHHHHHhcCC---------------
Confidence            688899999999999        677888777764 55799999999999999999999999998               


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                 ||.+|. .||||||.|+..|+..++++|+++| +++...|.+|..|++++...-..+++..-.
T Consensus        99 -----------Vn~~d~-e~wtPlhaaascg~~~i~~~li~~g-A~~~avNsdg~~P~dl~e~ea~~~~l~~~~  159 (527)
T KOG0505|consen   99 -----------VNAQDN-EGWTPLHAAASCGYLNIVEYLIQHG-ANLLAVNSDGNMPYDLAEDEATLDVLETEM  159 (527)
T ss_pred             -----------cccccc-ccCCcchhhcccccHHHHHHHHHhh-hhhhhccCCCCCccccccCcchhHHHHHHH
Confidence                       999999 7999999999999999999999999 999999999999999997766665554433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=4.4e-16  Score=120.83  Aligned_cols=83  Identities=27%  Similarity=0.368  Sum_probs=76.5

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         132 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       132 LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                      ||+||+.|+.+++++|++.+.+                          ++.     |+||||+|+..|+.+++++|+++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~--------------------------~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g   49 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD--------------------------INL-----GNTALHYAAENGNLEIVKLLLENG   49 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST--------------------------TTS-----SSBHHHHHHHTTTHHHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC--------------------------CCC-----CCCHHHHHHHcCCHHHHHHHHHhc
Confidence            7999999999999999998776                          343     789999999999999999999999


Q ss_pred             CCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         212 KIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       212 ~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                       ++++.+|..|+||||+|+.+|+.+++++|++.+.
T Consensus        50 -~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   83 (89)
T PF12796_consen   50 -ADINSQDKNGNTALHYAAENGNLEIVKLLLEHGA   83 (89)
T ss_dssp             -TCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT
T ss_pred             -ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             8999999999999999999999999999998864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214|consensus

Probab=99.63  E-value=1.3e-15  Score=114.22  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=90.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      .+.|++++|.++.|++        .+..|-+++..  ..|++|||+||-+|+.+++++|+..|++               
T Consensus         5 ~~~W~vkNG~~DeVk~--------~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~---------------   59 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQ--------SVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN---------------   59 (117)
T ss_pred             hHhhhhccCcHHHHHH--------HHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc---------------
Confidence            4789999999999994        44666555542  2589999999999999999999999998               


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHH
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC  229 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A  229 (399)
                                 ++.+|+ .|-|||..|+..||.+||++||+.| ++-.++-.+|.+.+..+
T Consensus        60 -----------i~~kDK-ygITPLLsAvwEGH~~cVklLL~~G-Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   60 -----------IQDKDK-YGITPLLSAVWEGHRDCVKLLLQNG-ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             -----------cCCccc-cCCcHHHHHHHHhhHHHHHHHHHcC-cccceeCCCchhHHhhc
Confidence                       899999 6999999999999999999999999 89999999998887655

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.62  E-value=1.1e-15  Score=163.19  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=107.2

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccC-------------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH-------------EGCRYNALHVSTKAVNPAMTEMLLE  149 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~-------------d~~g~T~LH~Aa~~g~~~iv~~Ll~  149 (399)
                      ...|.||||.||..|+.++|+        +|++.|++++...             ...|.||||+|+..|+.+++++|++
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVk--------lLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~  196 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVK--------LLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE  196 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHH--------HHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc
Confidence            456899999999999999999        7788888776421             1358999999999999999999999


Q ss_pred             ccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC---------CHHHHHHHHhCCCCCc-----
Q psy1036         150 IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG---------SVECVKRLIGCAKIQT-----  215 (399)
Q Consensus       150 ~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g---------~~~iv~~LL~~g~a~~-----  215 (399)
                      +|++                          +|.+|. .|+||||+|+..+         ...+.+++++.+ +..     
T Consensus       197 ~gad--------------------------in~~d~-~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~e  248 (743)
T TIGR00870       197 DPAD--------------------------ILTADS-LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKE  248 (743)
T ss_pred             CCcc--------------------------hhhHhh-hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHh
Confidence            9987                          889998 6999999999987         234666777665 333     


Q ss_pred             --ccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         216 --SVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       216 --~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                        ++.|.+|.||||+|+..|+.++++.|++.
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence              67899999999999999999999999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.61  E-value=4.4e-15  Score=139.83  Aligned_cols=120  Identities=16%  Similarity=0.081  Sum_probs=103.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||+|+..|+.++++        +|++.|++++...+..|+||||+|+..|+.+++++|+..|++         
T Consensus        67 d~~g~TpLh~Aa~~~~~eivk--------lLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd---------  129 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAK--------LLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD---------  129 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------
Confidence            356889999999999999999        899999999974455799999999999999999999999998         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+|. .|+||||+|+..++.+++.++...+      .+..+.+|++++   ++.++++.|+
T Consensus       130 -----------------in~kd~-~G~TpL~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        130 -----------------INIQTN-DMVTPIELALMICNNFLAFMICDNE------ISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             -----------------CCCCCC-CCCCHHHHHHHhCChhHHHHhcCCc------ccccccChhhhh---ccHHHHHHHH
Confidence                             789998 6999999999999999886665322      466778899876   3689999999


Q ss_pred             hccC
Q psy1036         243 TKLT  246 (399)
Q Consensus       243 ~~~~  246 (399)
                      +++.
T Consensus       183 sh~v  186 (300)
T PHA02884        183 SHFI  186 (300)
T ss_pred             HHHH
Confidence            8764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.61  E-value=1.3e-15  Score=130.81  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=86.6

Q ss_pred             CCccchHHHHHHHHcCCHHH---HHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCCCc
Q psy1036          82 LKSQELVKLRKLIEKGNLAD---VRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFT  157 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~---v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~-ga~~~~~  157 (399)
                      .+..|.||||+|+..|+.+.   ++        +|++.|++++...+..|+||||+|+..|+.+++++|+.+ |++    
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~--------~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d----  118 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLK--------LLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN----  118 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHH--------HHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----
Confidence            36788999999999999864   55        888999988874335799999999999999999999974 776    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTS  216 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~  216 (399)
                                            +|.+|. .|+||||+|+..|+.+++++|+++| ++.+
T Consensus       119 ----------------------~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736        119 ----------------------MEILNY-AFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             ----------------------CccccC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence                                  788998 6999999999999999999999999 7764

>KOG4369|consensus

Probab=99.60  E-value=3.2e-15  Score=153.78  Aligned_cols=290  Identities=13%  Similarity=0.085  Sum_probs=198.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCC-------CCCccc
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN-------PAFTNL  159 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~-------~~~~~l  159 (399)
                      .|+|-.||..||.|.|+        +|+..|+++.. +|..|++||.+|+..||..+|+.|+.+.++       ...+.+
T Consensus       758 ~t~LT~acaggh~e~ve--------llv~rganieh-rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVE--------LLVVRGANIEH-RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             cccccccccCccHHHHH--------HHHHhcccccc-cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            47999999999999999        88899988777 688899999999999999999999998876       223444


Q ss_pred             cccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC--CCCCcHHHHHHhCCCHH
Q psy1036         160 LYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN--KEGKTPLDVCFKMPSVD  236 (399)
Q Consensus       160 ~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d--~~G~TpL~~A~~~g~~~  236 (399)
                      ..++..+.... .+++..+++-..++- ...|||.+|...|++++|.+||..| +.++.+.  +.|-.||++|..+||..
T Consensus       829 Slacsggr~~vvelLl~~gankehrnv-sDytPlsla~Sggy~~iI~~llS~G-seInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNV-SDYTPLSLARSGGYTKIIHALLSSG-SEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccch-hhcCchhhhcCcchHHHHHHHhhcc-cccccccccccCcchhhhhhhccccH
Confidence            55554444332 555556665555665 5789999999999999999999999 8888775  78999999999999999


Q ss_pred             HHHHHHhccCchhhc-ccCCCCccchhhhhchHHHHHHHHHhhc---ccccc-ccChHHHHH--------HHhcCCccCC
Q psy1036         237 SMGPLSTKLTPTKVA-TKSEGTEEGERVFDNKEEALLFIKKNKK---IRFKS-FRNFQDAQN--------FAYHGSCGVN  303 (399)
Q Consensus       237 iv~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~k~---~r~~~-~~~~~~a~~--------~a~~~~~~~~  303 (399)
                      .++.|++........ ..+......+..|..+.+...++.....   -|-|. +....++..        .......|.+
T Consensus       907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence            999999988553221 1122333344667776665555543322   23222 111111111        1111123444


Q ss_pred             CCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHH
Q psy1036         304 TSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL  383 (399)
Q Consensus       304 ~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l  383 (399)
                      .+|....-.+.+...+..+.+--+.-+  .-+...-.-++..++|+|-+|..-|+++.++.||++++|.-.+..-+=+|+
T Consensus       987 asPvp~T~dtalti~a~kGh~kfv~~l--ln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~ 1064 (2131)
T KOG4369|consen  987 ASPVPNTWDTALTIPANKGHTKFVPKL--LNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRT 1064 (2131)
T ss_pred             cCCCCCcCCccceeecCCCchhhhHHh--hCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhccccccc
Confidence            554433333333344433331111111  111112234567888999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q psy1036         384 HVVCSR  389 (399)
Q Consensus       384 ~~~~~~  389 (399)
                      +.|||-
T Consensus      1065 maafRK 1070 (2131)
T KOG4369|consen 1065 MAAFRK 1070 (2131)
T ss_pred             HHHHHh
Confidence            999874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=1.1e-14  Score=131.23  Aligned_cols=128  Identities=26%  Similarity=0.268  Sum_probs=116.2

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHhccC--CC
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN-----PAMTEMLLEIIG--NP  154 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~-----~~iv~~Ll~~ga--~~  154 (399)
                      ....+.+++|.++..++.+.++        +++..|.+++. .+..|.||||+|+..|+     .+++++|++.|+  + 
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-  138 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVK--------LLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-  138 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHH--------HHHHcCCCccc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-
Confidence            3445678999999999999998        88899988865 68889999999999999     999999999999  3 


Q ss_pred             CCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                                              ..+.+|. .|+||||+|+..|+.+++++|++.| ++++.++..|.|++++|+..++
T Consensus       139 ------------------------~~~~~~~-~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         139 ------------------------VNNLRDE-DGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             ------------------------CccccCC-CCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccch
Confidence                                    1466687 7999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy1036         235 VDSMGPLSTKL  245 (399)
Q Consensus       235 ~~iv~~Ll~~~  245 (399)
                      .+++..++...
T Consensus       193 ~~~~~~l~~~~  203 (235)
T COG0666         193 IELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHHhcC
Confidence            99999999865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.59  E-value=7.3e-15  Score=149.04  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             hccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh---CC-------CHHHHHHHHhcc
Q psy1036         176 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK---MP-------SVDSMGPLSTKL  245 (399)
Q Consensus       176 ~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~---~g-------~~~iv~~Ll~~~  245 (399)
                      .++++|.+|. .|+||||+|+..++.+++++|+++| ++++.+|..|+|||++|+.   .+       ..++++.|++++
T Consensus       399 ~GADIN~kD~-~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        399 YIDDINKIDK-HGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             cCCccccccc-cCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            3445999999 6999999999999999999999999 9999999999999999976   22       245677888777


Q ss_pred             Cc
Q psy1036         246 TP  247 (399)
Q Consensus       246 ~~  247 (399)
                      +.
T Consensus       477 p~  478 (631)
T PHA02792        477 PT  478 (631)
T ss_pred             CC
Confidence            43

>KOG3676|consensus

Probab=99.56  E-value=1.1e-14  Score=147.47  Aligned_cols=131  Identities=19%  Similarity=0.178  Sum_probs=116.5

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc--------CC--------------CCCCcHHHHH
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL--------HE--------------GCRYNALHVS  135 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~--------~d--------------~~g~T~LH~A  135 (399)
                      ++.+....|.||||+|+.+.+.++|+        +|++.|+|++..        .|              ..|..||-+|
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~--------lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVR--------LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHH--------HHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHH
Confidence            45556677899999999999999999        677777766530        11              1467899999


Q ss_pred             HHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC-
Q psy1036         136 TKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ-  214 (399)
Q Consensus       136 a~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~-  214 (399)
                      |..++.+|+++|+++|+|                          +|.+|. +|+|.||..+..-..++..++|++| ++ 
T Consensus       248 AC~nq~eivrlLl~~gAd--------------------------~~aqDS-~GNTVLH~lVi~~~~~My~~~L~~g-a~~  299 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAHGAD--------------------------PNAQDS-NGNTVLHMLVIHFVTEMYDLALELG-ANA  299 (782)
T ss_pred             HHcCCHHHHHHHHhcCCC--------------------------CCcccc-CCChHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            999999999999999998                          899999 8999999999999999999999999 78 


Q ss_pred             -cccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         215 -TSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       215 -~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                       ..++|+.|-|||.+|++-|+.++.+.++++
T Consensus       300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence             899999999999999999999999999998

>KOG3676|consensus

Probab=99.56  E-value=1.6e-14  Score=146.25  Aligned_cols=152  Identities=17%  Similarity=0.126  Sum_probs=108.1

Q ss_pred             CCCCCCccchHHHHHHHH---cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Q psy1036          78 PFKSLKSQELVKLRKLIE---KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP  154 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~---~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~  154 (399)
                      .++.....|.|.||.|..   .++.++++.||+-.|+++.+.--+    ....|.||||+|+.+.+.++|++|++.|||.
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~----eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV  210 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS----EEYYGQSALHIAIVNRDAELVRLLLAAGADV  210 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh----HhhcCcchHHHHHHhccHHHHHHHHHcCCch
Confidence            344445788999999997   456699999998888655443322    4557999999999999999999999999994


Q ss_pred             CCccc---cccCCChhHHHHHHhhhccCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH
Q psy1036         155 AFTNL---LYDSDTPSYIERSDILLDLYVNTPD-KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       155 ~~~~l---~~a~~~~~~~~~~~~~~~~~vn~~d-~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~  230 (399)
                      +....   +.+......        ...-|... -+.|+.||-+||-.++.+||++|+++| ||++.+|.+|+|.||..+
T Consensus       211 ~aRa~G~FF~~~dqk~~--------rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lV  281 (782)
T KOG3676|consen  211 HARACGAFFCPDDQKAS--------RKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLV  281 (782)
T ss_pred             hhHhhccccCccccccc--------ccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHH
Confidence            32211   100000000        00011111 136999999999999999999999999 999999999999999987


Q ss_pred             hCCCHHHHHHHH
Q psy1036         231 KMPSVDSMGPLS  242 (399)
Q Consensus       231 ~~g~~~iv~~Ll  242 (399)
                      .+-..++..+++
T Consensus       282 i~~~~~My~~~L  293 (782)
T KOG3676|consen  282 IHFVTEMYDLAL  293 (782)
T ss_pred             HHHHHHHHHHHH
Confidence            763333333333

>KOG0515|consensus

Probab=99.52  E-value=7.3e-14  Score=134.54  Aligned_cols=120  Identities=23%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      --|..|+..|.+|+|+.++        ..-.++... +..|.|+||-|+..||.+||+|||+.|++              
T Consensus       552 aLLLDaaLeGEldlVq~~i--------~ev~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~gan--------------  608 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRII--------YEVTDPSQP-NDEGITALHNAICAGHYEIVKFLIEFGAN--------------  608 (752)
T ss_pred             HHHHhhhhcchHHHHHHHH--------HhhcCCCCC-CccchhHHhhhhhcchhHHHHHHHhcCCc--------------
Confidence            3578899999999999655        333455553 34799999999999999999999999998              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH--hCCCHHHHHHHHh
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF--KMPSVDSMGPLST  243 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~--~~g~~~iv~~Ll~  243 (399)
                                  ||..|. .||||||+||.++++.+|+.|++.|++-.-..=.++.||..-+-  +.|..++.++|..
T Consensus       609 ------------VNa~DS-dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  609 ------------VNAADS-DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ------------ccCccC-CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence                        999999 59999999999999999999999995444445588999998874  4578888888863

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=3.1e-14  Score=100.34  Aligned_cols=50  Identities=38%  Similarity=0.670  Sum_probs=32.9

Q ss_pred             cCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHH
Q psy1036         178 LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC  229 (399)
Q Consensus       178 ~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A  229 (399)
                      .++|.+|. .|.||||+||.+|+.++|++|++.| ++++.+|..|+||||+|
T Consensus         7 ~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---T-TS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            45899999 6999999999999999999999999 99999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=2.5e-13  Score=142.51  Aligned_cols=106  Identities=25%  Similarity=0.261  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      +.|+.|+..|+.+.|+        +|+..|++++. .|..|+||||+||..|+.+++++|++.|++              
T Consensus        84 ~~L~~aa~~G~~~~vk--------~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad--------------  140 (664)
T PTZ00322         84 VELCQLAASGDAVGAR--------ILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFGAD--------------  140 (664)
T ss_pred             HHHHHHHHcCCHHHHH--------HHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCCCC--------------
Confidence            3699999999999999        88899998887 477899999999999999999999999998              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC-------CCCCcccCCCCCCcHHHHHH
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~-------g~a~~~~~d~~G~TpL~~A~  230 (399)
                                  +|.+|. .|+||||+|+..|+.+++++|+.+       | ++.+..+..|.+|+..+.
T Consensus       141 ------------vn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 ------------PTLLDK-DGKTPLELAEENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             ------------CCCCCC-CCCCHHHHHHHCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence                        789998 699999999999999999999999       7 888888888888876654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.2e-13  Score=96.56  Aligned_cols=54  Identities=33%  Similarity=0.522  Sum_probs=46.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       188 G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                      |+||||+||..|+.+++++|++.| .+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999 999999999999999999999999999986

...

>KOG1710|consensus

Probab=99.46  E-value=4.2e-13  Score=120.74  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=105.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      ..+|..++..|+.+....||        ..-..++. .|..|.|+|..|+..|+.++|++||+.|++             
T Consensus        13 ~~~Lle~i~Kndt~~a~~LL--------s~vr~vn~-~D~sGMs~LahAaykGnl~~v~lll~~gaD-------------   70 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALL--------STVRQVNQ-RDPSGMSVLAHAAYKGNLTLVELLLELGAD-------------   70 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHH--------HHhhhhhc-cCCCcccHHHHHHhcCcHHHHHHHHHhCCC-------------
Confidence            35899999999999999544        43333444 466899999999999999999999999998             


Q ss_pred             hHHHHHHhhhccCCCC-CCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         167 SYIERSDILLDLYVNT-PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~-~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                   +|. ++. .+.||||+||..|+.+++++||+.| +.+...|.-|+|+-.+|+.-|+.++|..+-..+
T Consensus        71 -------------vN~~qhg-~~YTpLmFAALSGn~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   71 -------------VNDKQHG-TLYTPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             -------------cCccccc-ccccHHHHHHHcCCchHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence                         555 454 6999999999999999999999999 999999999999999999999999998776544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2e-13  Score=95.43  Aligned_cols=54  Identities=35%  Similarity=0.530  Sum_probs=45.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                      |+||||+||..|+.+++++|++.|.+                          +|.+|. .|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d--------------------------in~~d~-~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD--------------------------INAQDE-DGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG--------------------------TT-B-T-TS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC--------------------------CCCCCC-CCCCHHHHHHHccCHHHHHHH
Confidence            68999999999999999999999887                          889998 699999999999999999999


Q ss_pred             H
Q psy1036         208 I  208 (399)
Q Consensus       208 L  208 (399)
                      |
T Consensus        54 l   54 (54)
T PF13637_consen   54 L   54 (54)
T ss_dssp             H
T ss_pred             C
Confidence            6

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.44  E-value=1.9e-12  Score=105.46  Aligned_cols=93  Identities=30%  Similarity=0.399  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  204 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv  204 (399)
                      +..|+||||+|+..|+.+++++|++.+.+                          .+..+. .|.||||+|+..++.+++
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~--------------------------~~~~~~-~g~~~l~~a~~~~~~~~~   56 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGAD--------------------------VNAKDN-DGRTPLHLAAKNGHLEIV   56 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCC--------------------------CCccCC-CCCcHHHHHHHcCCHHHH
Confidence            34689999999999999999999999886                          467777 699999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         205 KRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       205 ~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      ++|+..+ ++++..+..|.||+|+|+..++.+++++|+++.
T Consensus        57 ~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          57 KLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHHcC-CCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            9999999 799999999999999999999999999999976

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.40  E-value=2.1e-12  Score=135.56  Aligned_cols=86  Identities=26%  Similarity=0.299  Sum_probs=82.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       131 ~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                      .||.|+..|+.+++++|++.|++                          +|.+|. .|+||||+||..|+.++|++|+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad--------------------------in~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~  137 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD--------------------------PNCRDY-DGRTPLHIACANGHVQVVRVLLEF  137 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--------------------------CCCcCC-CCCcHHHHHHHCCCHHHHHHHHHC
Confidence            58899999999999999999987                          789998 699999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         211 AKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       211 g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      | ++++.+|..|+||||+|+..|+.+++++|+..
T Consensus       138 G-advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        138 G-ADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            9 99999999999999999999999999999987

>KOG4214|consensus

Probab=99.37  E-value=1.3e-12  Score=98.25  Aligned_cols=90  Identities=22%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       131 ~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                      -+.|+.++|..+-|+-.+..|-+                          +|..-  .|+||||+||-+|+.+++++|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n--------------------------Vn~~~--ggR~plhyAAD~GQl~ilefli~i   56 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN--------------------------VNEIY--GGRTPLHYAADYGQLSILEFLISI   56 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc--------------------------HHHHh--CCcccchHhhhcchHHHHHHHHHh
Confidence            46789999999999988877754                          55443  599999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchh
Q psy1036         211 AKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK  249 (399)
Q Consensus       211 g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~  249 (399)
                      | ++++.+|+.|-|||--|+..||.++|++|++.+....
T Consensus        57 G-A~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   57 G-ANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             c-cccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc
Confidence            9 9999999999999999999999999999999885433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=9.8e-13  Score=92.64  Aligned_cols=55  Identities=25%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             hhhCC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchH
Q psy1036         113 LVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETP  191 (399)
Q Consensus       113 Ll~~g-~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~Tp  191 (399)
                      |++.| .+++. +|..|+||||+||..|+.+++++|++.|++                          ++.+|. .|+||
T Consensus         1 LL~~~~~~~n~-~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d--------------------------~~~~d~-~G~Tp   52 (56)
T PF13857_consen    1 LLEHGPADVNA-QDKYGNTPLHWAARYGHSEVVRLLLQNGAD--------------------------PNAKDK-DGQTP   52 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT----------------------------TT---T-TS--H
T ss_pred             CCccCcCCCcC-cCCCCCcHHHHHHHcCcHHHHHHHHHCcCC--------------------------CCCCcC-CCCCH
Confidence            45667 56666 688999999999999999999999998887                          899999 69999


Q ss_pred             HHHH
Q psy1036         192 LHFA  195 (399)
Q Consensus       192 Lh~A  195 (399)
                      ||+|
T Consensus        53 l~~A   56 (56)
T PF13857_consen   53 LHYA   56 (56)
T ss_dssp             HHH-
T ss_pred             HHhC
Confidence            9997

>KOG4369|consensus

Probab=99.26  E-value=2.8e-12  Score=132.58  Aligned_cols=246  Identities=16%  Similarity=0.114  Sum_probs=158.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCC------CCCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcC
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGN------PAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFG  199 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~------~~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g  199 (399)
                      +-.|+|-.||..||.++|++|+..|++      .+++++..++..+.... ..++...++++.+....+.|+|.+||..|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg  835 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG  835 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC
Confidence            456899999999999999999999988      45666666654433222 44455556677654337999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc--hhhcccCCCCccchhhhhchHHHHHHH---
Q psy1036         200 SVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP--TKVATKSEGTEEGERVFDNKEEALLFI---  274 (399)
Q Consensus       200 ~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---  274 (399)
                      +.++|++||..| ++-..+|-...|||.+|..-|..+++..|+..+..  .....+.+.....+........+...+   
T Consensus       836 r~~vvelLl~~g-ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~  914 (2131)
T KOG4369|consen  836 RTRVVELLLNAG-ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP  914 (2131)
T ss_pred             cchHHHHHHHhh-ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc
Confidence            999999999999 89899999999999999999999999999987733  122222222222222222222222211   


Q ss_pred             -----HHhhccc-----cccccChHHH-----------HHHHhcCCccCCCCCCCCCCCCCccccCCCCCCccccccccc
Q psy1036         275 -----KKNKKIR-----FKSFRNFQDA-----------QNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAA  333 (399)
Q Consensus       275 -----~~~k~~r-----~~~~~~~~~a-----------~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~  333 (399)
                           +.+...|     +..|.-+.+.           +..+++|         .+|+-+-..-|     +-++-.+...
T Consensus       915 gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktg---------ltplme~AsgG-----yvdvg~~li~  980 (2131)
T KOG4369|consen  915 GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTG---------LTPLMEMASGG-----YVDVGNLLIA  980 (2131)
T ss_pred             cchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccC---------CcccchhhcCC-----ccccchhhhh
Confidence                 1111122     2223323322           2222222         23333222233     3333333222


Q ss_pred             CCCCCCCCCchHHH-HHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhh
Q psy1036         334 EKPSPFKSLKSQEL-VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVC  387 (399)
Q Consensus       334 e~~~~~~~~~~~~~-t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~  387 (399)
                      ...--.-+|.++-. |+|-+++++||+.-|++|+..||-+-|-..-|=|.|--|+
T Consensus       981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen  981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             cccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhc
Confidence            21112236667777 9999999999999999999999999998777766665554

>KOG0515|consensus

Probab=99.22  E-value=4e-11  Score=115.88  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         132 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       132 LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                      |.-|+..|.+++|+-.+..-.+                          +...+. .|-|+||-|+..||++||++|++.|
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D--------------------------pSqpNd-EGITaLHNAiCaghyeIVkFLi~~g  606 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD--------------------------PSQPND-EGITALHNAICAGHYEIVKFLIEFG  606 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC--------------------------CCCCCc-cchhHHhhhhhcchhHHHHHHHhcC
Confidence            3457888999999998887665                          456666 7999999999999999999999999


Q ss_pred             CCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         212 KIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       212 ~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                       +++|..|.+||||||+|+..++..+++.|++.+.
T Consensus       607 -anVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Ga  640 (752)
T KOG0515|consen  607 -ANVNAADSDGWTPLHCAASCNNVPMCKQLVESGA  640 (752)
T ss_pred             -CcccCccCCCCchhhhhhhcCchHHHHHHHhccc
Confidence             9999999999999999999999999999999874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.22  E-value=3.1e-10  Score=102.09  Aligned_cols=99  Identities=24%  Similarity=0.287  Sum_probs=89.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCC----
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS----  200 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~----  200 (399)
                      +..+.+++|+++..+...++.+|+..|.+                          ++.+|. .|.||||+|+..|+    
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------~~~~~~-~g~t~l~~a~~~~~~~~~  122 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGAD--------------------------VNAKDA-DGDTPLHLAALNGNPPEG  122 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCC--------------------------cccccC-CCCcHHHHHHhcCCcccc
Confidence            44578999999999999999999999887                          788998 69999999999999    


Q ss_pred             -HHHHHHHHhCCCC---CcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhc
Q psy1036         201 -VECVKRLIGCAKI---QTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVA  251 (399)
Q Consensus       201 -~~iv~~LL~~g~a---~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~  251 (399)
                       .+++++||+.| +   ..+.+|..|+||||+|+..|+.++++.|++........
T Consensus       123 ~~~~~~~ll~~g-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~  176 (235)
T COG0666         123 NIEVAKLLLEAG-ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR  176 (235)
T ss_pred             hHHHHHHHHHcC-CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccc
Confidence             99999999999 6   67777999999999999999999999999987554444

>KOG1710|consensus

Probab=99.20  E-value=4.5e-11  Score=107.85  Aligned_cols=94  Identities=22%  Similarity=0.247  Sum_probs=85.0

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      .+..|+++|.-|+..|+++.|+        +|++.|+++|..+++.++||||+||..|+.+++++|++.|+.        
T Consensus        41 ~D~sGMs~LahAaykGnl~~v~--------lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~--------  104 (396)
T KOG1710|consen   41 RDPSGMSVLAHAAYKGNLTLVE--------LLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR--------  104 (396)
T ss_pred             cCCCcccHHHHHHhcCcHHHHH--------HHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc--------
Confidence            3567899999999999999999        888999999999999999999999999999999999999998        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                                        ....+. -|+|+-.+||.-|+.+||..+=.+
T Consensus       105 ------------------~~~vNs-vgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  105 ------------------MYLVNS-VGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ------------------cccccc-hhhhHHHHHHHhcchHHHHHHhcc
Confidence                              445556 499999999999999999877544

>KOG0818|consensus

Probab=99.01  E-value=9.4e-10  Score=105.79  Aligned_cols=87  Identities=24%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         132 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       132 LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                      ||-.++.|+.+++-.||..|++                          +|..+...|.||||+|++.|+.--+++|+-+|
T Consensus       137 LhasvRt~nlet~LRll~lGA~--------------------------~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG  190 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQ--------------------------ANFFHPEKGNTPLHVAAKAGQILQAELLAVYG  190 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccc--------------------------cCCCCcccCCchhHHHHhccchhhhhHHhhcc
Confidence            8888899999988888888887                          67766657999999999999999999999999


Q ss_pred             CCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         212 KIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       212 ~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                       +|+...|.+|+||+.||...||.++.+.|++..
T Consensus       191 -AD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  191 -ADPGAQDSSGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             -CCCCCCCCCCCcHHHHHHhcCchHHHHHHHHHH
Confidence             999999999999999999999999999888754

>KOG0782|consensus

Probab=98.97  E-value=2.8e-09  Score=103.97  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=100.4

Q ss_pred             HHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHH
Q psy1036          90 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI  169 (399)
Q Consensus        90 Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~  169 (399)
                      |..|+..+++-.+++.-        ..|.+... ++....|.||+|+..|+-+||+|||++|...               
T Consensus       870 il~av~~~D~~klqE~h--------~~gg~ll~-~~~~~~sllh~a~~tg~~eivkyildh~p~e---------------  925 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH--------LNGGSLLI-QGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---------------  925 (1004)
T ss_pred             HHHHHHhccHHHHHHHH--------hcCCceEe-eCcchhhHHHHHHhcCChHHHHHHHhcCCHH---------------
Confidence            78899999987777433        23322222 3334578999999999999999999998851               


Q ss_pred             HHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         170 ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       170 ~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                               .++..|. .|.|+||-|+..++..++.+|++.| +.+...|..|.||-.-|-+.|..++..+|-.+-
T Consensus       926 ---------lld~~de-~get~lhkaa~~~~r~vc~~lvdag-asl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  926 ---------LLDMADE-TGETALHKAACQRNRAVCQLLVDAG-ASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             ---------HHHHHhh-hhhHHHHHHHHhcchHHHHHHHhcc-hhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence                     1567777 7999999999999999999999999 899999999999999999999999999987653

>KOG0783|consensus

Probab=98.97  E-value=2.5e-10  Score=115.57  Aligned_cols=82  Identities=23%  Similarity=0.361  Sum_probs=77.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHH
Q psy1036         124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  203 (399)
Q Consensus       124 ~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~i  203 (399)
                      .|..|+|+||+|+..|...++++||++|.+                          ++.+|...|+||||-|..+|+.+|
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGid--------------------------v~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGID--------------------------VFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCce--------------------------eeeccccccchHhhHhhhhchHHH
Confidence            577899999999999999999999999987                          899998789999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCcHHHHHHhC
Q psy1036         204 VKRLIGCAKIQTSVRNKEGKTPLDVCFKM  232 (399)
Q Consensus       204 v~~LL~~g~a~~~~~d~~G~TpL~~A~~~  232 (399)
                      +-+||.+| +.+.++|++|..||++.++-
T Consensus       102 a~lLL~~g-~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  102 ASLLLSKG-RSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHHHHhcC-CceEEecccCCCHHHHHhhc
Confidence            99999999 89999999999999998873

>KOG0506|consensus

Probab=98.82  E-value=3.7e-09  Score=101.36  Aligned_cols=94  Identities=23%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      .+...+++|+..|.+..++.+.-.|.+                          ++..|. ..+|+||+||..|++++|++
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D--------------------------~~~~Dy-D~RTaLHvAAaEG~v~v~kf  557 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMD--------------------------LETKDY-DDRTALHVAAAEGHVEVVKF  557 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccc--------------------------cccccc-ccchhheeecccCceeHHHH
Confidence            456789999999999999888777776                          899998 59999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                      ||+....+++.+|.+|+|||+-|...+|.+++++|-+...+
T Consensus       558 l~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  558 LLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             HHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            99998899999999999999999999999999999876544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=7e-09  Score=62.76  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCccc
Q psy1036         187 LNETPLHFAAKFGSVECVKRLIGCAKIQTSV  217 (399)
Q Consensus       187 ~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~  217 (399)
                      .|+||||+||..|+.++|++||++| +|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC
Confidence            3899999999999999999999999 88863

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=8.5e-09  Score=64.02  Aligned_cols=32  Identities=34%  Similarity=0.556  Sum_probs=30.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCC
Q psy1036         188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  220 (399)
Q Consensus       188 G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~  220 (399)
                      |+||||+|+..|+.++|++||++| ++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            899999999999999999999999 99999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.72  E-value=2.7e-08  Score=97.01  Aligned_cols=90  Identities=24%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       131 ~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                      |||+++.....+-+..++.....                        ..++..|. .|+||||+|+..|+.+.++.|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~------------------------~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~a   77 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVS------------------------LVIDRRDP-PGRTPLHLAVRLGHVEAARILLSA   77 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhh------------------------ceeccccC-CCCccHHHHHHhcCHHHHHHHHhc
Confidence            58999888776655543332222                        22788898 699999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         211 AKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       211 g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                      | +++.++|++||+|||-|+..|+..++..++.++.
T Consensus        78 ~-Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   78 G-ADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             C-CCccccccccccHHHHHHHcCCHHHHHHHHHHhH
Confidence            9 9999999999999999999999999998887663

>KOG0705|consensus

Probab=98.71  E-value=4.2e-08  Score=96.22  Aligned_cols=92  Identities=24%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCC--CCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy1036         131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVN--TPDKALNETPLHFAAKFGSVECVKRLI  208 (399)
Q Consensus       131 ~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn--~~d~~~G~TpLh~Aa~~g~~~iv~~LL  208 (399)
                      -|..|.....+..+-+||.+|....                        +|  ..+. .|+|+||+||..|++.+.++|+
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e------------------------~~~t~~~~-~grt~LHLa~~~gnVvl~QLLi  681 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREE------------------------VNETCGEG-DGRTALHLAARKGNVVLAQLLI  681 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchh------------------------hhccccCC-CCcchhhhhhhhcchhHHHHHH
Confidence            4666777777888888888887522                        22  2333 4788888888888888888888


Q ss_pred             hCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCch
Q psy1036         209 GCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPT  248 (399)
Q Consensus       209 ~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~  248 (399)
                      -+| +|+..+|.+|+|+|.||.+.|..+++..|++.+.|.
T Consensus       682 Wyg-~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  682 WYG-VDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             HhC-ccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            888 888888888888888888888888888888887553

>KOG0818|consensus

Probab=98.66  E-value=8e-08  Score=92.74  Aligned_cols=87  Identities=26%  Similarity=0.323  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      .||..++.|+++.--        .||..|+++|......|.||||+|+..|+..-+++|+-.|++               
T Consensus       136 QLhasvRt~nlet~L--------Rll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---------------  192 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCL--------RLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---------------  192 (669)
T ss_pred             HHHHHhhcccHHHHH--------HHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---------------
Confidence            799999999999887        677889999998888899999999999999999999999998               


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                                 ++.+|. +|+||+.+|-..||.++.+.|++.
T Consensus       193 -----------~~a~d~-~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 -----------PGAQDS-SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -----------CCCCCC-CCCcHHHHHHhcCchHHHHHHHHH
Confidence                       789998 799999999999999988777753

>PF13606 Ank_3: Ankyrin repeat

Probab=98.60  E-value=5.9e-08  Score=58.68  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCC
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNP  154 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~  154 (399)
                      +|+||||+||..|+.++|++||++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999873

>KOG0705|consensus

Probab=98.58  E-value=1.4e-07  Score=92.74  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=42.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCC---CCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         191 PLHFAAKFGSVECVKRLIGCAK---IQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       191 pLh~Aa~~g~~~iv~~LL~~g~---a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                      -|.-|+....+..+-+||.+|.   .+-...+.+|+|+||+||+.|+..+.++|+=...
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~  685 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV  685 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc
Confidence            4666777777888888888883   1223446778999999999999999998885443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.53  E-value=1.3e-07  Score=58.56  Aligned_cols=27  Identities=19%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCC
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGN  153 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~  153 (399)
                      +|+||||+||..|+.+++++|+++|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            489999999999999999999999998

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.52  E-value=8.8e-08  Score=92.09  Aligned_cols=90  Identities=22%  Similarity=0.270  Sum_probs=76.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      ...+++|+..|++..++.        +.-.|.+... +|...+|+||+||..|+++++++|++...              
T Consensus       507 ~i~~~~aa~~GD~~alrR--------f~l~g~D~~~-~DyD~RTaLHvAAaEG~v~v~kfl~~~~k--------------  563 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRR--------FALQGMDLET-KDYDDRTALHVAAAEGHVEVVKFLLNACK--------------  563 (622)
T ss_pred             hhhhhhhhhcCCHHHHHH--------HHHhcccccc-cccccchhheeecccCceeHHHHHHHHHc--------------
Confidence            458999999999999994        4455656555 57778999999999999999999998644              


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                                 .+++.+|. +|+|||--|...+|.+++++|-+.-
T Consensus       564 -----------v~~~~kDR-w~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  564 -----------VDPDPKDR-WGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             -----------CCCChhhc-cCCCcchHhHhcCcHHHHHHHHHHh
Confidence                       34788999 7999999999999999999998865

>KOG0783|consensus

Probab=98.49  E-value=6.3e-08  Score=98.62  Aligned_cols=80  Identities=21%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +.-|+|+||+|+..|...+++        ||+++|.++.......||||||.|..+|+++|+-+||.+|..         
T Consensus        49 D~~GR~alH~~~S~~k~~~l~--------wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S---------  111 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLR--------WLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS---------  111 (1267)
T ss_pred             HhhccceeeeeeccchhHHHH--------HHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc---------
Confidence            567899999999999999999        999999999887777899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAK  197 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~  197 (399)
                                       +..+|+ .|..||.+-++
T Consensus       112 -----------------L~i~Dk-eglsplq~~~r  128 (1267)
T KOG0783|consen  112 -----------------LRIKDK-EGLSPLQFLSR  128 (1267)
T ss_pred             -----------------eEEecc-cCCCHHHHHhh
Confidence                             778888 69999988776

>KOG2384|consensus

Probab=98.42  E-value=6.1e-07  Score=76.81  Aligned_cols=71  Identities=23%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             cCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchh
Q psy1036         178 LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK  249 (399)
Q Consensus       178 ~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~  249 (399)
                      .++|.+|. .|||||+.|+..|..+.|.+|+.+|.+.+.+.|..|.+++.+|-+.|+.+++..|.+......
T Consensus         3 ~~in~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    3 GNINARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCccchhh-hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            45899999 799999999999999999999999988999999999999999999999999999998764433

>KOG0522|consensus

Probab=98.31  E-value=1.5e-06  Score=85.20  Aligned_cols=89  Identities=12%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      +||+++...+.+.+.+.+..      +.+..+.. .|..|.||||+|+..|+.+.++.|+..|++               
T Consensus        23 ~lh~~~~~~~~~sl~~el~~------~~~~~id~-~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---------------   80 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLA------KVSLVIDR-RDPPGRTPLHLAVRLGHVEAARILLSAGAD---------------   80 (560)
T ss_pred             ccchhhhccchhhHHHHHhh------hhhceecc-ccCCCCccHHHHHHhcCHHHHHHHHhcCCC---------------
Confidence            69999999888887754422      22233333 466789999999999999999999999997               


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                                 +-.+++ .||+|||-|+..|+.+++..+|.+-
T Consensus        81 -----------v~~kN~-~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 -----------VSIKNN-EGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             -----------cccccc-ccccHHHHHHHcCCHHHHHHHHHHh
Confidence                       678888 7999999999999999888777654

>KOG0520|consensus

Probab=98.24  E-value=1.3e-06  Score=91.91  Aligned_cols=66  Identities=30%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             cCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC-----CCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         178 LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK-----IQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       178 ~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~-----a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      ..++.+|. .||||||||+..|+..++..|++.|+     .++...+..|.|+-.+|..+|+..+..+|-++
T Consensus       632 ~ai~i~D~-~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  632 VAIDIRDR-NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccccccC-CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            34899998 79999999999999999999998884     23444556799999999999999998888654

>KOG0782|consensus

Probab=98.18  E-value=3.7e-06  Score=82.67  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=81.3

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      ...+..+-||+|+..|+-++|+.+|.+.|.-|++.-       +..|.|+||-|+..++..++++|++.|+.        
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~-------de~get~lhkaa~~~~r~vc~~lvdagas--------  959 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMA-------DETGETALHKAACQRNRAVCQLLVDAGAS--------  959 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHH-------hhhhhHHHHHHHHhcchHHHHHHHhcchh--------
Confidence            345667899999999999999966666665554433       45799999999999999999999999997        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                                        +-..|. .|.||-.-|-+.|..++..||-.+.
T Consensus       960 ------------------l~ktd~-kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  960 ------------------LRKTDS-KGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             ------------------heeccc-CCCChHHHHHhcCCchHHHHHhhhh
Confidence                              677888 6999999999999999999998765

>KOG0521|consensus

Probab=98.12  E-value=2.4e-06  Score=90.30  Aligned_cols=88  Identities=26%  Similarity=0.345  Sum_probs=80.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      .|.|+||.|+..|..-++++|++.|++                          +|..|. .|+||||.+...|+...+..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~--------------------------vn~~d~-~g~~plh~~~~~g~~~~~~~  707 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD--------------------------VNALDS-KGRTPLHHATASGHTSIACL  707 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc--------------------------chhhhc-cCCCcchhhhhhcccchhhh
Confidence            468999999999999999999999998                          899998 69999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                      |+++| ++.+..+.+|.+|+++|....+.+++-.+.
T Consensus       708 ll~~~-a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  708 LLKRG-ADPNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             hcccc-ccccccCccCcchhhHHhhhccccHHHHHh
Confidence            99999 999999999999999998877777665443

>KOG3609|consensus

Probab=98.02  E-value=2e-05  Score=81.55  Aligned_cols=121  Identities=20%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      .+.-.+..|++.|+...|++++++.....    -+.|. .|.-|.++||+|..+.+.+++++|+++...           
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~----lninc-~d~lGr~al~iai~nenle~~eLLl~~~~~-----------   87 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSK----LNINC-RDPLGRLALHIAIDNENLELQELLLDTSSE-----------   87 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccc----cchhc-cChHhhhceecccccccHHHHHHHhcCccc-----------
Confidence            34447899999999999998886643211    12222 466799999999999999999999987543           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCc----------ccCCCCCCcHHHHHHhCCC
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT----------SVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~----------~~~d~~G~TpL~~A~~~g~  234 (399)
                                            . .-+|-+|+..|.+++|++++.+.. ..          ...-..+.|||.+||..++
T Consensus        88 ----------------------~-gdALL~aI~~~~v~~VE~ll~~~~-~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn  143 (822)
T KOG3609|consen   88 ----------------------E-GDALLLAIAVGSVPLVELLLVHFV-DAPYLERSGDANSPHFTPDITPLMLAAHLNN  143 (822)
T ss_pred             ----------------------c-chHHHHHHHHHHHHHHHHHHhccc-ccchhccccccCcccCCCCccHHHHHHHhcc
Confidence                                  1 247899999999999999998862 21          1333567899999999999


Q ss_pred             HHHHHHHHhcc
Q psy1036         235 VDSMGPLSTKL  245 (399)
Q Consensus       235 ~~iv~~Ll~~~  245 (399)
                      .||++.|+.++
T Consensus       144 yEil~~Ll~kg  154 (822)
T KOG3609|consen  144 FEILQCLLTRG  154 (822)
T ss_pred             hHHHHHHHHcC
Confidence            99999999987

>KOG0511|consensus

Probab=97.93  E-value=2.3e-05  Score=73.83  Aligned_cols=73  Identities=23%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy1036         131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  210 (399)
Q Consensus       131 ~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~  210 (399)
                      -|..||+.|..+.|++|++.|.+                          +|..|. ....||.+|+..||.++|++||++
T Consensus        39 elceacR~GD~d~v~~LVetgvn--------------------------VN~vD~-fD~spL~lAsLcGHe~vvklLLen   91 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVN--------------------------VNAVDR-FDSSPLYLASLCGHEDVVKLLLEN   91 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCC--------------------------cchhhc-ccccHHHHHHHcCcHHHHHHHHHc
Confidence            58999999999999999999887                          899999 799999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHhC
Q psy1036         211 AKIQTSVRNKEGKTPLDVCFKM  232 (399)
Q Consensus       211 g~a~~~~~d~~G~TpL~~A~~~  232 (399)
                      | |-.+.-.-+|...+ |++-+
T Consensus        92 G-AiC~rdtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   92 G-AICSRDTFDGDRCH-YGALN  111 (516)
T ss_pred             C-CcccccccCcchhh-hhhhh
Confidence            9 55444445666554 44443

>KOG0511|consensus

Probab=97.89  E-value=4.2e-05  Score=72.13  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN  153 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~  153 (399)
                      .--|..||+.|+++.|+        +|++.|.++|.. |....+||.+|+..||.++|++||++|+-
T Consensus        37 f~elceacR~GD~d~v~--------~LVetgvnVN~v-D~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVR--------YLVETGVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHH--------HHHHhCCCcchh-hcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            34799999999999999        888999888884 77889999999999999999999999985

>KOG2384|consensus

Probab=97.86  E-value=3.3e-05  Score=66.40  Aligned_cols=78  Identities=17%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHc
Q psy1036         119 FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKF  198 (399)
Q Consensus       119 ~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~  198 (399)
                      +++. +|..|||||+.|+..|+.+.|.||+.+|+.                         .+...|. .|.+++.+|-+.
T Consensus         4 ~in~-rD~fgWTalmcaa~eg~~eavsyllgrg~a-------------------------~vgv~d~-ssldaaqlaek~   56 (223)
T KOG2384|consen    4 NINA-RDAFGWTALMCAAMEGSNEAVSYLLGRGVA-------------------------FVGVTDE-SSLDAAQLAEKG   56 (223)
T ss_pred             Cccc-hhhhcchHHHHHhhhcchhHHHHHhccCcc-------------------------ccccccc-ccchHHHHHHhc
Confidence            4444 588999999999999999999999999942                         2678888 699999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCc
Q psy1036         199 GSVECVKRLIGCAKIQTSVRNKEGKT  224 (399)
Q Consensus       199 g~~~iv~~LL~~g~a~~~~~d~~G~T  224 (399)
                      |..++|..|.+.- .+-+..++.-.+
T Consensus        57 g~~~fvh~lfe~~-~ets~p~nss~~   81 (223)
T KOG2384|consen   57 GAQAFVHSLFEND-RETSHPMNSSRD   81 (223)
T ss_pred             ChHHHHHHHHHHh-ccCCCcccCCCC
Confidence            9999999999886 555555544333

>KOG0521|consensus

Probab=97.69  E-value=3e-05  Score=82.14  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +..+-..|.|+||.|+..|..-.++        +|++.|++++. .+..|.||||.+...|+...+..|+++|++     
T Consensus       649 ~~~~~~~~~s~lh~a~~~~~~~~~e--------~ll~~ga~vn~-~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-----  714 (785)
T KOG0521|consen  649 WPVVLCIGCSLLHVAVGTGDSGAVE--------LLLQNGADVNA-LDSKGRTPLHHATASGHTSIACLLLKRGAD-----  714 (785)
T ss_pred             cchhhhcccchhhhhhccchHHHHH--------HHHhcCCcchh-hhccCCCcchhhhhhcccchhhhhcccccc-----
Confidence            3444456688999999999999999        89999999888 577899999999999999999999999998     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  209 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~  209 (399)
                                           .+..+. .|.+||++|....+.+++-+|.-
T Consensus       715 ---------------------~~a~~~-~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  715 ---------------------PNAFDP-DGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             ---------------------ccccCc-cCcchhhHHhhhccccHHHHHhh
Confidence                                 577777 69999999988877777765544

>KOG0520|consensus

Probab=97.56  E-value=5.8e-05  Score=79.82  Aligned_cols=93  Identities=16%  Similarity=0.081  Sum_probs=73.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  203 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~-ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~i  203 (399)
                      .-.|+|.||+++..++...++.+++. |..                          .+..|. .|.-.+|+ |..+++++
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~--------------------------~~eld~-d~qgV~hf-ca~lg~ew  622 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSG--------------------------DLELDR-DGQGVIHF-CAALGYEW  622 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccC--------------------------chhhcc-cCCChhhH-hhhcCCce
Confidence            44689999999999999999999985 332                          234455 36677788 55566666


Q ss_pred             HHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         204 VKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       204 v~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      +-+|+......++++|..||||||+|+.+|+..++..|++..
T Consensus       623 A~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lg  664 (975)
T KOG0520|consen  623 AFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELG  664 (975)
T ss_pred             eEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhc
Confidence            665554444899999999999999999999999999999654

>KOG3609|consensus

Probab=97.55  E-value=0.00017  Score=74.82  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             CCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC
Q psy1036          77 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  156 (399)
Q Consensus        77 ~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~  156 (399)
                      -+....+..|+++|+.|+.+-+.++++        +|++.+...       | .+|.+|+..|..++|++++.+......
T Consensus        53 lninc~d~lGr~al~iai~nenle~~e--------LLl~~~~~~-------g-dALL~aI~~~~v~~VE~ll~~~~~~~~  116 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQE--------LLLDTSSEE-------G-DALLLAIAVGSVPLVELLLVHFVDAPY  116 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHH--------HHhcCcccc-------c-hHHHHHHHHHHHHHHHHHHhcccccch
Confidence            355667788999999999999999999        777766332       2 389999999999999999988654211


Q ss_pred             ccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC
Q psy1036         157 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR  218 (399)
Q Consensus       157 ~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~  218 (399)
                      ....                 .+-+.....-+.|||.+||..++.||+++||.+| +.+...
T Consensus       117 ~~~~-----------------~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~~P  160 (822)
T KOG3609|consen  117 LERS-----------------GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIPIP  160 (822)
T ss_pred             hccc-----------------cccCcccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCCCC
Confidence            1110                 0112222114789999999999999999999999 666544

>KOG2505|consensus

Probab=96.98  E-value=0.0014  Score=64.31  Aligned_cols=55  Identities=29%  Similarity=0.435  Sum_probs=46.1

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         183 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       183 ~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                      .+. .-.|+||+|+..|..++|.+||+.| +|+.++|..|+||.+++.   +.||-..++
T Consensus       426 ~~~-ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  426 NDY-LTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             ccc-ccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc---cHHHHHHHH
Confidence            344 4679999999999999999999999 999999999999999987   344444343

>smart00248 ANK ankyrin repeats

Probab=96.98  E-value=0.0012  Score=37.88  Aligned_cols=28  Identities=39%  Similarity=0.573  Sum_probs=24.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy1036         188 NETPLHFAAKFGSVECVKRLIGCAKIQTS  216 (399)
Q Consensus       188 G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~  216 (399)
                      |.||||+|+..++.+++++|++.+ .+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~-~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG-ADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            789999999999999999999988 5543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.60  E-value=0.0039  Score=35.52  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=24.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCC
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEIIGN  153 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~ga~  153 (399)
                      |+||||+|+..|+.+++++|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            68999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=94.43  E-value=0.06  Score=53.15  Aligned_cols=52  Identities=19%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      ..-|+||+|+..|...+|.+||+.|++                          ....|. .|+||..+++   +.++=..
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Leeg~D--------------------------p~~kd~-~Grtpy~ls~---nkdVk~~  478 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEEGCD--------------------------PSTKDG-AGRTPYSLSA---NKDVKSI  478 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHhcCC--------------------------chhccc-CCCCcccccc---cHHHHHH
Confidence            356899999999999999999999988                          567888 7999999987   4444444


Q ss_pred             HH
Q psy1036         207 LI  208 (399)
Q Consensus       207 LL  208 (399)
                      ++
T Consensus       479 F~  480 (591)
T KOG2505|consen  479 FI  480 (591)
T ss_pred             HH
Confidence            44

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.18  E-value=0.12  Score=44.83  Aligned_cols=136  Identities=8%  Similarity=-0.024  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      -|.-|+..+-+.+++        ..-+.....    -...++.+-.||...+.+||+++-+.-.-.+.....-.|-....
T Consensus        49 Ll~HAVk~nmL~ILq--------kyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQ--------KYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHcCcHHHHH--------HHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccc
Confidence            567788888888888        332222211    12456788899999999999999554433333333222211111


Q ss_pred             HHHHHhhhccC---CCCCCCC----CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         169 IERSDILLDLY---VNTPDKA----LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       169 ~~~~~~~~~~~---vn~~d~~----~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                      ..++.+....-   ....+..    --.--|.+|+..|....|.-.|++| -+++.      +.|..|+.++|..++.++
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkyg-g~~~~------~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYG-GNVDI------IVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcC-CcccH------HHHHHHHHhhHHHHHHHh
Confidence            11111111100   1111110    0123478999999999999999999 45543      899999999999999988


Q ss_pred             Hh
Q psy1036         242 ST  243 (399)
Q Consensus       242 l~  243 (399)
                      +.
T Consensus       190 i~  191 (192)
T PF03158_consen  190 IR  191 (192)
T ss_pred             hc
Confidence            75

These proteins may be involved in promoting survival of infected macrophages [].

>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []

Probab=89.56  E-value=0.18  Score=33.11  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             ccccHHHHHHHHHhccccccCCCCCHHHHHHH
Q psy1036           3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF   34 (399)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~   34 (399)
                      ||++=.++...+.+..+++++.|++.++|+.|
T Consensus        13 Iy~~W~~~~~~v~g~~ga~~k~F~t~~eA~~~   44 (44)
T PF01693_consen   13 IYTSWAECKKQVSGYPGAIYKSFKTREEAEEF   44 (44)
T ss_dssp             EECCHHHHHHHCTT-TT-EEEEESSHHHHHHH
T ss_pred             eECCHHHHHHHhCCCCCceECCcCCHHHHhhC
Confidence            78888999999999999999999999999986

This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.58  E-value=1.8  Score=32.02  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       189 ~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      ..-|..|...|+.|+++.+++.+  .++      ...+..|+...+.+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~--~~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN--KPD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh--ccH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            35689999999999999999766  222      35799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.34  E-value=6.5  Score=35.46  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      .|-.|+..-+++.+..++        ...      .  .-.++|-+|..++..+|+-+|+..-.-   +.--.       
T Consensus       156 sledAV~AsN~~~i~~~V--------tdK------k--dA~~Am~~si~~~K~dva~~lls~f~f---t~~dv-------  209 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLV--------TDK------K--DAHQAMWLSIGNAKEDVALYLLSKFNF---TKQDV-------  209 (284)
T ss_pred             cHHHHHhhcCHHHHHHHh--------cch------H--HHHHHHHHHhcccHHHHHHHHHhhcce---ecchh-------
Confidence            366777777777777333        211      1  235577777777788888888776321   00000       


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCcccC---CCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAK--FGSVECVKRLIGCAKIQTSVR---NKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~--~g~~~iv~~LL~~g~a~~~~~---d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                 +...   .+.--+-|+-.  ..+..++++.|++|-+++|.+   -+.|.|-|+-|.++++.+++..|++
T Consensus       210 -----------~~~~---~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk  275 (284)
T PF06128_consen  210 -----------ASME---KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK  275 (284)
T ss_pred             -----------hhcC---cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH
Confidence                       0000   01112222222  224556666666665555542   3556666666666666666666666


Q ss_pred             cc
Q psy1036         244 KL  245 (399)
Q Consensus       244 ~~  245 (399)
                      .+
T Consensus       276 ~G  277 (284)
T PF06128_consen  276 YG  277 (284)
T ss_pred             cC
Confidence            54

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=81.29  E-value=10  Score=34.22  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         187 LNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       187 ~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                      .|.|-|--|.++++.+++.+||++|
T Consensus       253 SGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  253 SGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             CcchHHHhHHhcCcHHHHHHHHHcC
Confidence            5999999999999999999999999

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.38  E-value=2.8  Score=30.97  Aligned_cols=47  Identities=19%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI  150 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~  150 (399)
                      .-|..|+..|+.++++        .+++.+..     +   ...|..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~--------~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIIN--------ICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHH--------HHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            3689999999999999        55454411     1   2379999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 78/497 (15%), Positives = 161/497 (32%), Gaps = 154/497 (30%)

Query: 1   ERVFDNKEEALLFIKKN-------KKIRFKSFRNFQDAQNFAYHG--SCGVNTSL-LEAP 50
           +R++++ +   +F K N        K+R ++    + A+N    G    G  T + L+  
Sbjct: 117 DRLYNDNQ---VFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSG-KTWVALDVC 171

Query: 51  ASPSTVTA--------------ADPSALPQVSSL---------AAAEKPSPFKSLKSQEL 87
            S                    +  + L  +  L         + ++  S  K       
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 88  VKLRKLIEKGN-------LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN 140
            +LR+L++          L +    V +      ++ +        C+   L ++T+   
Sbjct: 232 AELRRLLKSKPYENCLLVLLN----VQN--AKAWNAFNL------SCK--IL-LTTR--F 274

Query: 141 PAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNT-----PDKALNETPLH-- 193
             +T+ L          +    + TP  ++    LL  Y++      P + L   P    
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 194 -FAAKFGSVECVKRL-----IGCAK----IQTSVRNKEGKTPLDV--CFKMPSVDSMGPL 241
             A      + +        + C K    I++S+   E   P +    F   SV    P 
Sbjct: 332 IIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSV---FPP 383

Query: 242 STKLTPTKVATK--SEGTEEGERVFDNKEEALLFIKKNKK----------IRFKSFRNFQ 289
           S  + PT + +    +  +    V  NK      ++K  K          +  K     +
Sbjct: 384 SAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----K 438

Query: 290 DAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQ-----------VSSLAAAEKPSP 338
               +A H       S+++    P T  + D                 + ++   E+ + 
Sbjct: 439 LENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 339 FKSLKSQELVKLR----KLIEKGN-----------LADVR---KLVWDN-PRY--LVSS- 376
           F+ +     +  R    K+                L  ++     + DN P+Y  LV++ 
Sbjct: 493 FRMV----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 377 GDF-PTI-LHVVCSRCS 391
            DF P I  +++CS+ +
Sbjct: 549 LDFLPKIEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 58/373 (15%), Positives = 109/373 (29%), Gaps = 111/373 (29%)

Query: 88  VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------STKAV 139
           V     ++  +  DV+    D P+ ++S  +   I+      +              + V
Sbjct: 24  VFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 140 NPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG 199
              + E+L        +   L         + S +   +Y+   D+  N+  + FA    
Sbjct: 80  QKFVEEVL-----RINY-KFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQV-FAKYN- 130

Query: 200 SVECVKRLIGCAKIQTSVRNKE-------------GKTPL--DVCF------KMPS---- 234
               V RL    K++ ++                 GKT +  DVC       KM      
Sbjct: 131 ----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 235 ------------VDSMGPLSTKLTPTKVA----------TKSEGTEEGERVFDNK--EEA 270
                       ++ +  L  ++ P   +                 E  R+  +K  E  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 271 LLFIK--KNKKIRFKSFRNFQ--------DAQNFAYHGSCGVNTSLLEAPASPST----- 315
           LL +   +N K  + +F N            Q   +  +       L+  +   T     
Sbjct: 247 LLVLLNVQNAKA-WNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 316 -----VTAADPSAL--------PQVSSLAAA---EKPSPFKSLKSQELVKLRKLIEKG-- 357
                     P  L        P+  S+ A    +  + + + K     KL  +IE    
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 358 NL--ADVRKLVWD 368
            L  A+ RK+   
Sbjct: 365 VLEPAEYRKMFDR 377

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEII---------GNPAFTNLLYDSDTPSYIER 171
           TILH     + +   + A    +  ++  I+         G     +   D +       
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 172 SDILLDLY-----VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTP 225
            + L   +     +N  D    +T L+ AA+ G++  V  L+   A     + NK G  P
Sbjct: 263 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRP 319

Query: 226 LD 227
           +D
Sbjct: 320 VD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 101 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL- 159
           D+      +P  ++ +   P +     +        + + P + EM   +  + +  N  
Sbjct: 33  DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 92

Query: 160 LYDSDTPSY----------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG 209
              S+              +  +     L +N P      TPLH+     ++E VK L+ 
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 210 CAKIQTSVRNKEGKTPL 226
                    +  G++ L
Sbjct: 153 -HGSNRLYGDNMGESCL 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP----SYIERSDILLDLYVNTPDKA 186
            +  +     P   + L    G+  +      SDT     +   R+ ++   YV    ++
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72

Query: 187 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
             + PLH AAK G++  ++  +     +  +  +K G T L
Sbjct: 73  -IDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           VN  DKA   T L++A   G  + V+ L     I+ + +NK G T L
Sbjct: 99  VNGLDKA-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           +N  +K L +T LH AA  G  + V+ L+   A+    +RN E K   D+
Sbjct: 133 LNQQNK-LGDTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 2/47 (4%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            +  +    +     A        +K+  G      ++ N E     
Sbjct: 166 TDLRNIE-KKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYLDD 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 39/157 (24%)

Query: 84  SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
             E+ +   L+  G   D      D        G+  T LH  C              A 
Sbjct: 57  QPEIAEA--LLGAG--CDPELR--DF------RGN--TPLHLACEQG---------CLAS 93

Query: 144 TEMLLEIIGNPAFTNLL----YDSDTP-------SYIERSDILLDL--YVNTPDKALNET 190
             +L +    P   ++L    Y+  T         Y+   ++L+ L   VN  +     T
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153

Query: 191 PLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            LH A    + + V  L+ C A +  +    +G +P 
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPY 188

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N  +  L +TPLH A      E  + L+G        +R+  G TPL
Sbjct: 38  LNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPL 82

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           +N  ++     PLH+A  +G  +  + L+   A +  S+ NK G+ P+D 
Sbjct: 98  INAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N  D     +PLH+A + G    V+ LI   A+I   V N+   TPL
Sbjct: 32  LNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPL 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 7e-06
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N  ++  ++TPLH AA  G  + V++L+   A I  +  N+ G  PL
Sbjct: 65  INVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 5/37 (13%), Positives = 14/37 (37%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
             +    + G+   V+  +   +   +  +  G +PL
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 26/155 (16%)

Query: 84  SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
             + +K   L ++G  A+V                  T L +              +  +
Sbjct: 117 KVKALKF--LYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKG---------HVEV 163

Query: 144 TEMLLEIIG-------NPAFTNLLY---DSDTPSYIERSDILLDLY--VNTPDKALNETP 191
            ++LL+ +G       N     L++    SD       + +LLD    VN   +   +TP
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTP 222

Query: 192 LHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           L  A +   +  V+RL+    I+ +  + +GKT L
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  ++    TPLH A +    + V+ L+   A     +R K G TP 
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPF 76

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                K    TP   AA  GSV+ +K  +   A +  +  +  G T  
Sbjct: 65  PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 12/57 (21%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKI--------QTSVRNKEGKTPL 226
           VN  D     T    AA +G V+ +K L   G A +              K G T L
Sbjct: 98  VNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL 152

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           +N PDK  + TPL  A   G V CVK L+   A    +V+  +G T  + 
Sbjct: 66  INAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +    +A K G ++ VK  +     +  +   + G+ PL
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPL 44

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN   +     PLH+AA  G +E ++ L+  G A I     +K   TPL
Sbjct: 33  VNRTLEG-GRKPLHYAADCGQLEILEFLLLKG-ADIN--APDKHHITPL 77

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           V+     LN TPLH+A + G +  V +L+   A    S+ + EG + +
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCI 113

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
           VN  DK    T LH+A   G+   +  L+   A +    +N +G++ LD+
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ++   D   +   +  A ++G  E  + L+     ++    +KE  T L
Sbjct: 1   HMTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLL 46

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            +  D     + +H AA+FG    V  LI     +   + ++ G TPL
Sbjct: 102 PSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.8 bits (102), Expect = 8e-05
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           V  PDK  N T LH+AA    ++ VK  I   A +   +      TPL
Sbjct: 35  VRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPL 80

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 35/147 (23%), Positives = 48/147 (32%), Gaps = 31/147 (21%)

Query: 86  ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVNPA 142
           + VKL  L+E G  ADV      + R   + G F       C Y     L ++       
Sbjct: 104 QCVKL--LVENG--ADV------HLR---ACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 143 MTEMLLEIIGNPAFTNLLYDSD--TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS 200
           +   LLE    PA      DS   T          L   V   D +   + L      G 
Sbjct: 151 VVTYLLENPHQPASLEAT-DSLGNTV---------LHALVMIADNSPENSALVIHMYDGL 200

Query: 201 VECVKRLIG-CAKIQTSVRNKEGKTPL 226
           ++   RL          + N +G TPL
Sbjct: 201 LQMGARLCPTVQLE--EISNHQGLTPL 225

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ++    + ++  L  AA  G VE V++L+   A    +  N+ G+ P+
Sbjct: 5   IHMLGGS-SDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPI 49

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
            N  D A    P+H AA+ G ++ +  L    A++   V +  G+ P+D+
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPVDL 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
           ++  D     T LH AA +   E V+ L+  G A I   V ++ G T L++
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 174 ILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
               +  +   +   ETP   AA+    + + +L+    +     ++ G+T L
Sbjct: 32  PSSYIAADVVSE--YETPWWTAARKADEQALSQLLEDRDV--DAVDENGRTAL 80

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           V+  D+    T L F A  GS +CV+ L   G A +      + G T L
Sbjct: 69  VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 114

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 7e-07
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           VNT     N++PLH AAK G V+ VK L+   A    +  N  G  P+D 
Sbjct: 69  VNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           ET LH A+  G +  V+ L+  G +     V++  G TPL
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNG-SDPN--VKDHAGWTPL 47

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
            N  D A   TPLH A   G ++ V+ L+   A + T     +  +PL
Sbjct: 36  PNVKDHA-GWTPLHEACNHGHLKVVELLLQHKALVNT--TGYQNDSPL 80

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N P+     TPLH A +  +   ++ L+   A    + R   G+TPL
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
           Y++  +  L +T LH AA  G    V++L    A +   V  + G T L
Sbjct: 37  YLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 29/156 (18%), Positives = 41/156 (26%), Gaps = 29/156 (18%)

Query: 84  SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------- 134
               V+   L   G  A V     +        G   T LH  CR  A            
Sbjct: 57  EASTVEK--LYAAG--AGVLVA--ER------GGH--TALHLACRVRAHTCACVLLQPRP 102

Query: 135 -STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETP 191
              +  +        +   + +      DS      E      D    +   +     TP
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTP 161

Query: 192 LHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           LH A      E V+ L    A +        G+TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +T LH A        +  L+          ++N  G+T L
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
                     TPL  A    +    + L    A         +  +P   
Sbjct: 218 PTARMYG-GRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSS 264

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 227
           ++  D     T LH AA +   E V+ L+  G A I   V ++ G T L+
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 149

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            ETP   AA+    + + +L+    +     ++ G+T L
Sbjct: 45  YETPWWTAARKADEQALSQLLEDRDVD--AVDENGRTAL 81

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           V+  D+    T L F A  GS +CV+ L   G A +      + G T L
Sbjct: 70  VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 115

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 181
            LH++ +  +  M  +LL    N    N      TP        ++  +D+L+     V+
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              +    TPLH A+ +G+++ VK L+   A +  + + K G +PL
Sbjct: 306 ATTRM-GYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 38/151 (25%)

Query: 86  ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 145
            + +L  L+E+   A                 +  T LH    +N         N  + +
Sbjct: 160 RVAEL--LLERD--AHPNAA--GK--------NGLTPLHVAVHHN---------NLDIVK 196

Query: 146 MLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVNTPDKALNETPLHFAA 196
           +LL   G+P      ++  TP       + +E +  LL      N        TPLH AA
Sbjct: 197 LLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAA 253

Query: 197 KFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           + G  E V  L+   A    ++ NK G TPL
Sbjct: 254 QEGHAEMVALLLSKQANG--NLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           VN   K    +PLH AA+ G  + V  L+       +  + +G TPL +
Sbjct: 337 VNAKTKL-GYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN   K  ++TPLH AA+ G    VK L+   A    ++    G TPL
Sbjct: 73  VNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPL 117

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            N  +    ETPLH AA+ G  E  K L+   AK+  + + K+ +TPL
Sbjct: 40  PNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPL 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                ++   TPLH A+  G +  VK L+   A    +V N + +TPL
Sbjct: 7   GGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPL 51

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                K    TPLH AAK+G V   + L+   A    +   K G TPL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPL 183

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            N    A   TPLH AA+ G VE V  L+   A    +   K+G TPL
Sbjct: 106 PNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAK--IQTSVRNKEGKTPLDV 228
            N        TPL  A + G +     L           V +K   +  + 
Sbjct: 370 PNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           V   DK  N+ PLH AA  GS++ ++ L   G + +  + ++K+G TPL
Sbjct: 133 VRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           VN  DK    TPL  A   G  +    L+     +  + + +G    DV
Sbjct: 167 VNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 180 VNTPDKALN--ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
           VN  D   +   TP H A   G++E VK L     K   +    +G T L
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
           +N        T LH A      E  + LI   A +   +++K  + PL
Sbjct: 100 LNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKI-QTSVRNKEGKTPL 226
           +   D+     PLH++  F + E    L+     +      +  G TP 
Sbjct: 29  LLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 40/155 (25%)

Query: 84  SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
           S + V L  L++ G  A V+    ++        D  + +HE  R           +   
Sbjct: 137 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 172

Query: 144 TEMLLEIIGNP-AFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHF 194
              L+   GN     +      TP               LL+   +  ++    ++PLH 
Sbjct: 173 VNSLIAYGGNIDHKIS---HLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHA 228

Query: 195 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
             +  S E    L+   A  Q   +N EGK P+++
Sbjct: 229 VVRTASEELACLLMDFGADTQ--AKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN      + +PLH A   G + CVK L+   A++       +  TPL
Sbjct: 85  VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN--GVTADWHTPL 129

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN        TPL  A   GS +CV  L+  G A +Q      +  +P+
Sbjct: 118 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHG-ASVQP---ESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 162 DSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRN 219
           D   P+   +   I L       D   + +P+H AA  G    ++ LI     +      
Sbjct: 32  DGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--IT 89

Query: 220 KEGKTPL 226
            +  +PL
Sbjct: 90  ADHVSPL 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           VN PD      P+H A + G    V  L   + +    R+  G TPL++
Sbjct: 94  VNVPDGT-GALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            N  D +   +P+H AA+ G ++ +K L+   A +  +V +  G  P+
Sbjct: 61  PNVQDTS-GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
               L  AA  G V+ V+RL+    +     N+ GKT L
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
            +  ++   +T L     FGS      L+  G A    +V++  G +P+
Sbjct: 29  PDALNRF-GKTALQVMM-FGSTAIALELLKQG-ASP--NVQDTSGTSPV 72

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            N  D A    P+H AA+ G ++ +  L   G A++   VR+  G+ P+D+
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARL--DVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              L  AA  G VE V+ L+   A    +  N  G+ P+
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPI 49

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 9/50 (18%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           ++  D      P+  A + G  +  + L               G     +
Sbjct: 104 LDVRDAW-GRLPVDLAEELGHRDVARYLRAAAG-------GTRGSNHARI 145

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRN---KEGKTPL 226
           V+     + ET LH AA + ++E    L+     ++          EG+T L
Sbjct: 30  VHQRGA-MGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTAL 79

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 37/145 (25%)

Query: 84  SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 143
           + E   +  L+E     ++      +  Y            EG    ALH++    N  +
Sbjct: 49  NLEAAMV--LMEAA--PELVFEPMTSELY------------EG--QTALHIAVINQNVNL 90

Query: 144 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 203
              LL      A  +            R+   +  Y         E PL FAA  GS E 
Sbjct: 91  VRALLA---RGASVS-----------ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136

Query: 204 VKRLI--GCAKIQTSVRNKEGKTPL 226
           V+ LI  G A I    ++  G T L
Sbjct: 137 VRLLIEHG-ADI--RAQDSLGNTVL 158

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           E+PL  AAK   V+ + +L+     +   R   G+T L
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
           VN  D     TPLH AA +G  E  + L+     +     NK G+T  DV 
Sbjct: 225 VNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
           +N PD      PLH AA  G ++  + LI   A +     N EG TPLD+ 
Sbjct: 99  INQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY---------VN 181
            L ++ +     + +  +   G         D +     E   +L D             
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGV--------DIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              K+   T LH AA  G  E +K LI     +  ++++ +G TPL
Sbjct: 194 RHAKS-GGTALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N  +     T LH A    +V+ VK L+   A I  +  + EG  PL
Sbjct: 66  INYANVD-GLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPL 110

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                   +      A   G  E V RL+   A I     N +G T L
Sbjct: 34  TKVKFD--DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTAL 77

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)

Query: 86  ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 144
           + + L  L++       +++ V  +       G             ALH++ +  N  + 
Sbjct: 71  DTIAL--LLDVARKTDSLKQFVNASYTDSYYKG-----------QTALHIAIERRNMTLV 117

Query: 145 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 204
            +L+E   N A       +    + +++      Y         E PL  AA    +  V
Sbjct: 118 TLLVE---NGADVQA---AANGDFFKKTKGRPGFY-------FGELPLSLAACTNQLAIV 164

Query: 205 KRLI--GCAKIQTSVRNKEGKTPL 226
           K L+         S R+  G T L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVL 188

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 41/142 (28%)

Query: 86  ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 144
            +VK   L++     AD+     D+       G+  T+LH         V       +M 
Sbjct: 162 AIVKF--LLQNSWQPADISAR--DS------VGN--TVLHALVEVADNTVDNTKFVTSMY 209

Query: 145 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 204
             +L +                                 ++    TPL  AA  G +  +
Sbjct: 210 NEILILGAK-------------------LHPTLKLEEITNRK-GLTPLALAASSGKIGVL 249

Query: 205 KRLIGCAKIQTSVRNKEGKTPL 226
             ++         R        
Sbjct: 250 AYILQ--------REIHEPECR 263

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           E PL  AA       V  L   G  +     ++  G T L
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 33/126 (26%)

Query: 84  SQELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 142
              +V    L E G   AD+R+   D+       G+  T+LH                  
Sbjct: 152 QPHIVHY--LTENGHKQADLRR--QDS------RGN--TVLHALVAIADNTRENTKFVTK 199

Query: 143 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 202
           M ++LL              +          +         +     +PL  AAK G + 
Sbjct: 200 MYDLLLI-----------KCAKLFPDTNLEAL--------LNND-GLSPLMMAAKTGKIG 239

Query: 203 CVKRLI 208
             + +I
Sbjct: 240 IFQHII 245

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV--RNKEGKTPL 226
               D+   +T  H A +  S  C++ L+   A     +  RN +G T L
Sbjct: 72  PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ++  +  L +TPLH A        V+ L+   A       ++ G+T  
Sbjct: 39  LDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAA 83

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ++  D     +PL  A +  S+  V+ L+   A +    +   G + L
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           VN    +   + LH A+  G +  V+ L+   A    S++N    TPL V
Sbjct: 176 VNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-----AKIQTSVRNKEGKTPL 226
           +TPLH A   G++  V RL+        ++   + N   +TPL
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPL 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +   +     T LH A      E V+ L+   A I  +V  K G++PL
Sbjct: 109 LEARNYD-GLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPL 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           +N  D     TPL +A +   V+CV+ L+   A +  +     G TP+D+
Sbjct: 95  INIYDWN-GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            +   K   E+ L  A+  G  + V  L+     I   + +  G TPL
Sbjct: 62  PHILAKE-RESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 190 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
             +H  A  G ++ +K  +  G   +  +  ++ G TPL
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPL 40

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN PD+    TPL +A+ FG +E V+ L+  G A     +  KE ++ L
Sbjct: 29  VNKPDER-GFTPLIWASAFGEIETVRFLLEWG-ADP--HILAKERESAL 73

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTP 225
           + T   +   TP+  A   G  +  + +      K+     N     P
Sbjct: 128 LTTEADS-GYTPMDLAVALGYRKVQQVIENHI-LKL--FQSNLVPADP 171

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 48/145 (33%)

Query: 83  KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 142
           +  E++K+  L++ G  A       D            T L     +          N  
Sbjct: 151 EYLEMIKI--LVQLG--ASPTAK--DK--------ADETPLMRAMEFR---------NRE 187

Query: 143 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 202
             +++++ + + +                        ++  +K    + LH+A      +
Sbjct: 188 ALDLMMDTVPSKSSLR---------------------LDYANK-QGNSHLHWAILINWED 225

Query: 203 CVKRLIGC-AKIQTSVRNKEGKTPL 226
              R +     +  ++ + E   PL
Sbjct: 226 VAMRFVEMGIDV--NMEDNEHTVPL 248

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
               D   N   +H AA+ G  + V+RLI        +++N+ G T L
Sbjct: 13  RIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTAL 57

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 24/119 (20%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-----------DSDTPSYI-------ERS 172
            L++S +A    +T+ LL+           Y                          E  
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 173 DILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
            +L +    V                K  +    +  +   A +    R++       V
Sbjct: 307 QLLQEKLDEVVRSLNT-GAGGAVKRKKKAAPAVKRMKLAPSAPV--RTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
               ++    T LH A KFG V+  K L               G+ P+
Sbjct: 46  PTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPI 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            +       + P+H A      + V  L+           + G+ P 
Sbjct: 79  HSLWH---GQKPIHLAVMANKTDLVVALV-------EGAKERGQMPE 115

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  D   +  PL+ + +   V   K L+      +  +     G T L
Sbjct: 237 VNMEDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
           VN  D     TPLH AA  G  E  K L+  G A    + +N++G TPLD+
Sbjct: 101 VNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADP--TKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           +  L  AAK G VE VK+L     +          TPL
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
               +     TPLHFAA +  V  V+ L+   A +    ++K G  PL
Sbjct: 35  CRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPL 79

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           V+  DK     PLH A  +G  E  + L+  G A +  +V +    TPL
Sbjct: 68  VHAKDKG-GLVPLHNACSYGHYEVAELLVKHG-AVV--NVADLWKFTPL 112

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           V+  D     T LH AAK G  E V+ L+   ++  + ++  G TP+
Sbjct: 70  VDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDV 228
           ++  +    ++PLH AA+    +CV   +   + +   ++NKEG+TPL  
Sbjct: 170 LHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                +    +PLH AA+ G V+    L+   A I     +++ +TPL
Sbjct: 4   FKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPL 48

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +N  D       LH+AA  G V+  + L+     +     N  G +PL
Sbjct: 137 INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDL--HAVNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ++T  +    TPL  AA+   +E VK LI   A +    ++ EG T L
Sbjct: 37  IDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDP--KDAEGSTCL 81

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  D     TP+ +A ++  V+ VK L+   + I   +R+ E    L
Sbjct: 104 VNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICL 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            N  +   NE PLH AA     + VK L+        S  + +G T L
Sbjct: 57  KNLLE---NEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTAL 99

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 5/49 (10%), Positives = 12/49 (24%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +    K   +T  + A     V  V   +    +            + +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
               D     +  ++A    +V  V  L+   A         E + PL
Sbjct: 24  TFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNL----LENEFPL 66

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            + +H   K G V+ +  L+      T+  N     P 
Sbjct: 162 LSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPD 198

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
           VN  D      PLH AAK G +  V+ L+    + +    RN +G T  D+
Sbjct: 96  VNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              L  AA  G +E +  L+     +  + +N  G+T L
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTAL 42

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
            +  D+      +H AA+ G ++ ++ L+   A +  ++ + EG  PL
Sbjct: 63  PDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLPL 107

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 29/100 (29%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 190
            LH++ K  N A   ++  II N                          ++    A   T
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGH-----------------------LDAKA-ADGNT 228

Query: 191 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            LH+AA +   +C+K L+            N+ G+T LD+
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDI 265

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 227
           VN  D  L  T LH+A +    E V+ LI  G A +    ++K  KT  D
Sbjct: 93  VNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADV--HTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            +   K  + TPLH AA  G    V+ L+   A +  + ++    T L
Sbjct: 60  RDARTKV-DRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
            +PLH AA++G     + L+          R K  +TPL
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPL 71

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              L  AA+ G  + V+ L+   A   T   +  G +PL
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPL 38

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN   K    TPLH AAK G  E VK L+   A +    R+K+G TP 
Sbjct: 35  VNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPE 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 190 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           TP H A K G  E VK L   G A +  + R+       
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKG-ADV--NARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            TPLH AAK G  E VK+L+   A +  + R+K+G TPL
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPL 46

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           N   +H  A  G +  +   I     I     ++EG TPL
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPL 40

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           VN  D     TPL +A     V+CVK L+   A    ++    G   +D+
Sbjct: 95  VNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                K   E+ L  A   G  + VK L+ C   +     +  G TPL
Sbjct: 62  PQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +N  D+    TPL +AA  G +  V+ L+  G A     +  K  ++ L
Sbjct: 29  INHTDEE-GFTPLMWAAAHGQIAVVEFLLQNG-ADP--QLLGKGRESAL 73

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           VN  D     TPLH AA    VE    L+   A    ++ N  GK+ +D+
Sbjct: 117 VNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADP--TLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
           +N  D  L +T LH AA  G ++  + L+   +    S+ + +G T   +
Sbjct: 273 MNALDS-LGQTALHRAALAGHLQTCRLLLSYGSDP--SIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  +K    TPLH AA+    + ++ L    AK+  +  +  G+T L
Sbjct: 240 VNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQTAL 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           V+  DK     PLH A  +G  E  + L+   A +  +  +    TPL
Sbjct: 84  VHAKDKG-GLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            +  D     TPLH AA +  V  V+ L+   A +    ++K G  PL
Sbjct: 51  CHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPL 95

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 176 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           LD   N  D   N TPL  A   G    + +L+    K+    ++ EG T L
Sbjct: 24  LDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTAL 72

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VNT D    +TPL ++  FG  E    L+   A +    RN EG+TPL
Sbjct: 94  VNTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  +    ETPL  A+K+G  E VK+L+  G A I  S R+  G T  
Sbjct: 127 VNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADI--SARDLTGLTAE 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +   D     T L +A K   +   ++L+  G + +  + ++  GKTPL
Sbjct: 61  LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKG-SNV--NTKDFSGKTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.7 bits (102), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  DK    TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 61  VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.9 bits (100), Expect = 4e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  DK    TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 28  VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +N  ++      L  AA+ G ++ VK L+  G   I    +N  G T L
Sbjct: 99  LNKHNRY-GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           +N  +  ++++P  +A   G  E +  ++  A    +  N+ G   L
Sbjct: 65  INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
              L  A +  + +  + L     ++     + EG TPL
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPL 43

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           V+  D     TPL+ A     +E  K LI   A I   ++N    +P 
Sbjct: 32  VDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADIN--LQNSISDSPY 76

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 29/108 (26%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 190
           ALH++ ++V+     ++  ++ N                          ++      + T
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGN-----------------------LDKQTGKGS-T 207

Query: 191 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDVCFKMPSVD 236
            LH+     + EC+K L+          + N+ G+TPLD+  ++    
Sbjct: 208 ALHYCCLTDNAECLKLLLRGKA---SIEIANESGETPLDIAKRLKHEH 252

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  DK    TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 28  VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            N  D     TPLH A    +    + LI         R  +G TPL
Sbjct: 83  ANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ET LH AA++   +  KRL+   A    ++++  G+TPL
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 94

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            +  +    ETPL  AA+ GS E  K L+    A     + +   + P D+
Sbjct: 183 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 8e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  D    ++ LH+AA   +V+    L+   A     ++N   +TPL
Sbjct: 150 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            TPL  AA+      ++ LI   A +     +  GK+ L
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSAL 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            N  D  +  TPLH A    +    + LI         R  +G TPL
Sbjct: 51  ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           ET LH AA++   +  KRL+   A    ++++  G+TPL
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 62

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            +  +    ETPL  AA+ GS E  K L+    A     + +   + P D+
Sbjct: 151 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  D    ++ LH+AA   +V+    L+  G A     ++N   +TPL
Sbjct: 118 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNG-ANK--DMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            TPL  AA+      ++ LI   A +  +  +  GK+ L
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSAL 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 187 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           L    L  ++  G  + V+R+I        S+ N EG T L
Sbjct: 36  LPLALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITAL 74

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 5/45 (11%), Positives = 12/45 (26%), Gaps = 5/45 (11%)

Query: 183 PDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           P+    +  L    +    +     I    +++    N      L
Sbjct: 1   PEIT-GQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALL 41

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
            + P+     T LH A   G  E VK L+  G   +  +  + +G TPL
Sbjct: 63  PSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNV--NAADSDGWTPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                  + G  +C + L G   K+   + NK     L
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYAL 176

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  D     TPL  A        V  L+   A     + NK  ++ L
Sbjct: 159 VNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            T LH+AA+  ++  VK L+G        ++++GKTP+
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            +  D+   +TP+  AA+ G +E V  LI  G A ++    +    T   +
Sbjct: 306 KDKQDED-GKTPIMLAAQEGRIEVVMYLIQQG-ASVE--AVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPL 226
               +K    + LH AA       +  ++   K++  +   ++ G T L
Sbjct: 192 PTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 180 VNTPDKALN--ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
                +A       L  AA  G +E V++ +        S  N+EG T L
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITAL 58

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVC 229
           VN+PD     TPLH AA          L+   A I  +    +G T  + C
Sbjct: 80  VNSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
            + P++    T LH A    +   V  LI   A +  +  +  G TPL
Sbjct: 47  PSQPNEE-GITALHNAICGANYSIVDFLITAGANV--NSPDSHGWTPL 91

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 30/154 (19%)

Query: 95  EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR--YNALHVSTKAVNPAMTEMLLE--- 149
             G   D           L   G             Y+ L  +       ++  L+    
Sbjct: 15  MLGTYEDFL--------ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 150 ---IIGNPAFTNLLY-----DSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFG 199
                     T          +D     E   I L+    +    K   +  +       
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIFNY 125

Query: 200 SVECVKR------LIGCAKIQTSVRNKEGKTPLD 227
            V+  +       +   + +Q  +++K G T L+
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 86  ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 145
           ++     LI KG  AD++             G   T+     +     +        + +
Sbjct: 56  KISMF--LINKG--ADIKSR--TK------EGT--TLFFPLFQGGGNDI---TGTTELCK 98

Query: 146 MLLE------IIGNPAFTNLLY-----DSDTPSYIERSDILLD---LYVNTPDKALNETP 191
           + LE       +  P    +         D    I    ++     L +   DK    T 
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-GLTA 157

Query: 192 LHFAAKFGSVECVKRLI 208
           L F  +      +K + 
Sbjct: 158 LEFVKRCQKPIALKMME 174

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 6e-05
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
             L  AA+ G  + V+ L+   A +  +  +  G TPL
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPL 51

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  D A   TPL  AA FG +E V+ L+  G A +  +  + EG TPL
Sbjct: 73  VNAVDHA-GMTPLRLAALFGHLEIVEVLLKNG-ADV--NANDMEGHTPL 117

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
            TPLH AA FG +E V+ L+  G A +  + ++K GKT  D+
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNG-ADV--NAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           VN  D +   TPLH AA  G +E V+ L+   A +  +  +  G TPL
Sbjct: 40  VNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPL 84

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
               D+  + T LH+A   G  E V+ L+     +    ++  G +PL
Sbjct: 33  ATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPL 77

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 28/184 (15%), Positives = 47/184 (25%), Gaps = 21/184 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
           VN  D A   +PLH AA  G  E VK L+       +  N+ G TPL         +   
Sbjct: 66  VNDKDDA-GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 240 PLSTKLTPTKVATKSEGTEEGERVFDNKEEAL-LFIKKNKKIRFKSFRNFQDAQNFAYHG 298
            L             + T           + + + +        +               
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

Query: 299 SCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN 358
                  L+   AS       + + L     +A               L+     + +G 
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPL----QVAKGGL----------GLILK--RLAEG- 226

Query: 359 LADV 362
             + 
Sbjct: 227 -EEA 229

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  D+    TPL+ A   G +E V+ L+  G A +  +  +  G TPL
Sbjct: 40  VNAKDE-YGLTPLYLATAHGHLEIVEVLLKNG-ADV--NAVDAIGFTPL 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           VN  D     TPLH AA  G +E  + L+  G A +  + ++K GKT  
Sbjct: 73  VNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHG-ADV--NAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 9e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 190 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
             L  AA+ G  + V+ L+   A +  + +++ G TPL
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPL 51

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
               L  AA+ G  + V+ L+   A +  + ++K G TPL
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPL 61

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDV 228
           V   DK    TPLH AA+ G +E VK L+  G A +    ++K GKT  D+
Sbjct: 50  VAAKDKN-GSTPLHLAARNGHLEVVKLLLEAG-ADVXA--QDKFGKTAFDI 96

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 2/48 (4%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 226
           V       N      AA+ G +  + RL         ++   E     
Sbjct: 121 VKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.85
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.71
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.7
3bsu_A	53	Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid	93.31
1qhk_A	47	RNAse HI, protein (ribonuclease HI); ribonuclease	92.33

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.7e-30  Score=242.18  Aligned_cols=221  Identities=15%  Similarity=0.077  Sum_probs=149.3

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDF---PTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~---~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      ..+..|.||||+||..|+.++|+        +|++.|.+   ++. .+..|+||||+||..|+.+++++|+++|++    
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----   70 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLD--------FLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYAAGAG----   70 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHH--------HHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHH--------HHHhcCCCcccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----
Confidence            45678999999999999999999        77777766   444 567899999999999999999999999987    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC-----------------------
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ-----------------------  214 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~-----------------------  214 (399)
                                            ++.+|. .|+||||+|+..|+.+++++|++++ ++                       
T Consensus        71 ----------------------~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  126 (282)
T 1oy3_D           71 ----------------------VLVAER-GGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLTQSQDCTPDTSHA  126 (282)
T ss_dssp             ----------------------SSCCCT-TSCCHHHHHTTTTCHHHHHHHSSSC-CSSCCCC------------------
T ss_pred             ----------------------CCCCCC-CCCCHHHHHHHcCCcchhHhhhccC-CCCchhhHHHHhhcccccCcchhcc
Confidence                                  677887 6888888888888888888888877 33                       


Q ss_pred             ------------------------cccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccC-CCCccchhhhhchHH
Q psy1036         215 ------------------------TSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKS-EGTEEGERVFDNKEE  269 (399)
Q Consensus       215 ------------------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~  269 (399)
                                              ++.+|..|+||||+|+..|+.+++++|++.+......... +.+....++.....+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~  206 (282)
T 1oy3_D          127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS  206 (282)
T ss_dssp             -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             hhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHH
Confidence                                    6677888888888888888888888888876443322211 111111111111111


Q ss_pred             HHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHH
Q psy1036         270 ALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVK  349 (399)
Q Consensus       270 ~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~  349 (399)
                      .++.+-                    ..|                                      ......+..+.||
T Consensus       207 ~v~~Ll--------------------~~g--------------------------------------ad~~~~d~~g~tp  228 (282)
T 1oy3_D          207 VLELLL--------------------KAG--------------------------------------ADPTARMYGGRTP  228 (282)
T ss_dssp             HHHHHH--------------------HTT--------------------------------------CCTTCCCTTSCCH
T ss_pred             HHHHHH--------------------HcC--------------------------------------CCCcccccCCCCH
Confidence            111111                    011                                      1112233456799


Q ss_pred             HHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccccCcccc
Q psy1036         350 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCSGASED  396 (399)
Q Consensus       350 l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~~~~~~  396 (399)
                      ||+|++.|+.++|+.|+..|+++++.+.+|.|+|+.|..-...-++|
T Consensus       229 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~~~~~  275 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD  275 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCCCCCCC--------------------
T ss_pred             HHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccccccc
Confidence            99999999999999999999999999999999999998876655543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=3.2e-30  Score=247.77  Aligned_cols=269  Identities=13%  Similarity=0.066  Sum_probs=180.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc---
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL---  159 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l---  159 (399)
                      ..+|.|+||.||+.|++++|+        +|+++|++++...+..|+||||+||..|+.++|++||++|++++....   
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~--------~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~   93 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQ--------QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   93 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH--------HHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCChHHHHHHHcCCHHHHH--------HHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCC
Confidence            456889999999999999999        888999999885555699999999999999999999999998654332   


Q ss_pred             ---cccCCChhH-HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC----------CCCCCcH
Q psy1036         160 ---LYDSDTPSY-IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR----------NKEGKTP  225 (399)
Q Consensus       160 ---~~a~~~~~~-~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~----------d~~G~Tp  225 (399)
                         +.+...... ....+...+.++|..|. .|+||||+|+..|+.+++++|+++| ++++.+          +..|+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~g-a~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           94 TPFILAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCC-----CTTCSCCH
T ss_pred             chhHHHHhcccchhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcC-CCcchhhccccccccccCCCCcH
Confidence               222211111 12555667788999998 6999999999999999999999999 787654          4568999


Q ss_pred             HHHHHhCCCHHHHHHHHhc-cCchhhcccCCCCccchhhh-hchHHHHHHHHHh--hccccccccChHHHHHHHhcCCcc
Q psy1036         226 LDVCFKMPSVDSMGPLSTK-LTPTKVATKSEGTEEGERVF-DNKEEALLFIKKN--KKIRFKSFRNFQDAQNFAYHGSCG  301 (399)
Q Consensus       226 L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--k~~r~~~~~~~~~a~~~a~~~~~~  301 (399)
                      ||+|+.+|+.+++++|+++ ..........+......... ........+++.+  .++.+..-.               
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d---------------  236 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG---------------  236 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCC---------------
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcC---------------
Confidence            9999999999999999965 33322222221111111111 1111111122211  222211100               


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchh
Q psy1036         302 VNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT  381 (399)
Q Consensus       302 ~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~  381 (399)
                         .-..||+.    ..+..+ ...+........+......+..+.||||+|++.|+.++|+.|+..||+++..     +
T Consensus       237 ---~~g~t~L~----~a~~~~-~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~  303 (337)
T 4g8k_A          237 ---ERGKTPLI----LAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----D  303 (337)
T ss_dssp             ---GGGCCHHH----HHHHTT-CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----C
T ss_pred             ---CCCCCHHH----HHHHhh-hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----C
Confidence               00011111    111111 1122222233334456677788889999999999999999999999998754     5


Q ss_pred             HHHHhhcc
Q psy1036         382 ILHVVCSR  389 (399)
Q Consensus       382 ~l~~~~~~  389 (399)
                      +||.|++.
T Consensus       304 ~L~~A~~~  311 (337)
T 4g8k_A          304 LVMTARRN  311 (337)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            89999874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.2e-29  Score=231.00  Aligned_cols=219  Identities=16%  Similarity=0.103  Sum_probs=173.5

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      +++..+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++    
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----   69 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICH--------MLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGAL----   69 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHH--------HHHHcCCCcCc-cCCCCCCHHHHHHHhCCHHHHHHHHhCCCC----
Confidence            45666788999999999999999999        88899988877 466899999999999999999999999987    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                            ++..|. .|.||||+|+..|+.+++++|++.|..+++..|..|+||||+|+..|+.++
T Consensus        70 ----------------------~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  126 (237)
T 3b7b_A           70 ----------------------VDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL  126 (237)
T ss_dssp             ----------------------CCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ----------------------CCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence                                  788888 699999999999999999999999878899999999999999999999999


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      +++|++.+.........+.  ..++.. ...+..++++.+                 ...|                   
T Consensus       127 ~~~Ll~~g~~~~~~~~~g~--t~L~~A-~~~~~~~~~~~L-----------------l~~g-------------------  167 (237)
T 3b7b_A          127 VKLLLSKGSDINIRDNEEN--ICLHWA-AFSGCVDIAEIL-----------------LAAK-------------------  167 (237)
T ss_dssp             HHHHHHTTCCTTCCCTTSC--CHHHHH-HHHCCHHHHHHH-----------------HTTT-------------------
T ss_pred             HHHHHHCCCCCCccCCCCC--CHHHHH-HHCCCHHHHHHH-----------------HHcC-------------------
Confidence            9999998754333322222  222211 111111121111                 1011                   


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                                         ......+..+.||||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|++..
T Consensus       168 -------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          168 -------------------CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             -------------------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             -------------------CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence                               111223345678999999999999999999999999999999999999998643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=3.3e-30  Score=256.25  Aligned_cols=291  Identities=20%  Similarity=0.139  Sum_probs=180.1

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------  154 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------  154 (399)
                      ..+..|+||||+||..|++++|+        +|++.|++++. .+..|+||||+||..|+.+++++|++.|++.      
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~--------~Ll~~g~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~   79 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVK--------NLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD   79 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHH--------HHHHTTCCSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence            34667888999999999999999        77788877776 4667888888888888888888888888763      


Q ss_pred             CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC
Q psy1036         155 AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP  233 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g  233 (399)
                      +.+++++++..+.... .+++..++++|..|. .|+||||+|+..|+.++|++|++.+ ++.+..+..|+||||+|+..|
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYG  157 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHcC
Confidence            3456666654443322 555666777888887 5888888888888888888888888 788888888888888888888


Q ss_pred             CHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhcccccc-----ccChH--------HH-HHHHhcCC
Q psy1036         234 SVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKS-----FRNFQ--------DA-QNFAYHGS  299 (399)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~-----~~~~~--------~a-~~~a~~~~  299 (399)
                      +.+++++|+++..........+.+.....+.....+.++.+... ++....     .....        +. ..+...|.
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  236 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  236 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88888888887654333333322222223333333333333221 111100     11111        11 11111111


Q ss_pred             ccCCCC--CCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCC
Q psy1036         300 CGVNTS--LLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG  377 (399)
Q Consensus       300 ~~~~~s--~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~  377 (399)
                       +.+..  ...+|+    +.++..+ ..++... ..+.+......+..+.|+||.|++.|+.++|+.|+..+++++....
T Consensus       237 -~~~~~~~~g~t~L----~~A~~~g-~~~~v~~-Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  309 (437)
T 1n11_A          237 -SANAESVQGVTPL----HLAAQEG-HAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR  309 (437)
T ss_dssp             -CTTCCCTTCCCHH----HHHHHTT-CHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred             -CCCCCCCCCCCHH----HHHHHCC-CHHHHHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence             11100  001111    1111111 2222222 2233344445566777999999999999999999999999998888


Q ss_pred             CchhHHHHhhccc
Q psy1036         378 DFPTILHVVCSRC  390 (399)
Q Consensus       378 d~~~~l~~~~~~~  390 (399)
                      +|.|+||.|++..
T Consensus       310 ~g~t~L~~A~~~g  322 (437)
T 1n11_A          310 MGYTPLHVASHYG  322 (437)
T ss_dssp             SCCCHHHHHHHSS
T ss_pred             CCCCHHHHHHHcC
Confidence            8999999988753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=3.2e-30  Score=237.96  Aligned_cols=217  Identities=14%  Similarity=0.083  Sum_probs=142.9

Q ss_pred             CCCccchHHHHHHHHcC-------------CHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy1036          81 SLKSQELVKLRKLIEKG-------------NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEML  147 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G-------------~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~L  147 (399)
                      ..+..|+||||+|+..|             +.++|+        +|++.|.+++...+..|+||||+||..|+.+++++|
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~--------~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVIS--------DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHH--------HHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            45678999999999987             899999        888889887665678899999999999999999999


Q ss_pred             HhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHH
Q psy1036         148 LEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD  227 (399)
Q Consensus       148 l~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~  227 (399)
                      ++.|++                          ++..|. .|+||||+|+..|+.+++++|++.+..+++.+|..|+||||
T Consensus        77 l~~g~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  129 (253)
T 1yyh_A           77 LEASAD--------------------------ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI  129 (253)
T ss_dssp             HHTTCC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHH
T ss_pred             HHcCCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHH
Confidence            999987                          788888 69999999999999999999999995599999999999999


Q ss_pred             HHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCC
Q psy1036         228 VCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLL  307 (399)
Q Consensus       228 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~  307 (399)
                      +|+..|+.+++++|++...........+.  ..++.. ...+..++++.+                 ...|         
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~--t~L~~A-~~~~~~~~v~~L-----------------l~~g---------  180 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGK--SALHWA-AAVNNVDAAVVL-----------------LKNG---------  180 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSC--BHHHHH-HHHTCHHHHHHH-----------------HHTT---------
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCC--CHHHHH-HHcCCHHHHHHH-----------------HHcC---------
Confidence            99999999999999998754433332222  222221 111122222211                 1111         


Q ss_pred             CCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhh
Q psy1036         308 EAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVC  387 (399)
Q Consensus       308 ~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~  387 (399)
                                                   ......+..+.||||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|+
T Consensus       181 -----------------------------a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          181 -----------------------------ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  231 (253)
T ss_dssp             -----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             -----------------------------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence                                         111223345679999999999999999999999999999999999999998


Q ss_pred             ccc
Q psy1036         388 SRC  390 (399)
Q Consensus       388 ~~~  390 (399)
                      +.-
T Consensus       232 ~~g  234 (253)
T 1yyh_A          232 ERM  234 (253)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.3e-29  Score=220.24  Aligned_cols=120  Identities=26%  Similarity=0.338  Sum_probs=114.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      ++|+.||+.|++++|+        +|++.|++++. ++..|+||||+|+..|+.+++++|++.|++              
T Consensus         6 ~~L~~Aa~~G~~~~v~--------~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~gad--------------   62 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVK--------DLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGAD--------------   62 (169)
T ss_dssp             HHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------
T ss_pred             HHHHHHHHcCCHHHHH--------HHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccc--------------
Confidence            4799999999999999        88899999998 577899999999999999999999999987              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                                  ++.+|. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|+..|+.+++++|++.
T Consensus        63 ------------~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  125 (169)
T 4gpm_A           63 ------------VNAKDS-DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISK  125 (169)
T ss_dssp             ------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ------------hhhhcc-CCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                        889998 6999999999999999999999999 99999999999999999999999999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-29  Score=252.12  Aligned_cols=293  Identities=16%  Similarity=0.101  Sum_probs=194.9

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------  154 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------  154 (399)
                      ..+..+.||||+||..|+.++|+        +|++.|++++. .+..|+||||+||..|+.+++++|+++|+++      
T Consensus        42 ~~~~~~~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  112 (437)
T 1n11_A           42 VSNVKVETPLHMAARAGHTEVAK--------YLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA  112 (437)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHH--------HHHHHTCCSSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHH--------HHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCC
Confidence            34567789999999999999999        88888888777 4668999999999999999999999998874      


Q ss_pred             CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC
Q psy1036         155 AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP  233 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g  233 (399)
                      +.+++++++..+.... ..++..+.+++..+. .|+||||+|+..|+.+++++|+++| ++++..+..|+||||+|+..|
T Consensus       113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  190 (437)
T 1n11_A          113 GHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHN  190 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSCCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcC
Confidence            3456666654443322 455556777788887 6999999999999999999999999 899999999999999999999


Q ss_pred             CHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhcc-c---cccccCh--------HHHHHHHhcCCcc
Q psy1036         234 SVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKI-R---FKSFRNF--------QDAQNFAYHGSCG  301 (399)
Q Consensus       234 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~-r---~~~~~~~--------~~a~~~a~~~~~~  301 (399)
                      +.+++++|+++..........+.+...........+.++.+...... .   ....+..        .+..++......+
T Consensus       191 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  270 (437)
T 1n11_A          191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN  270 (437)
T ss_dssp             CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence            99999999987754332222222222223333333444444332111 0   0011111        1222222111111


Q ss_pred             CCC--CCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCc
Q psy1036         302 VNT--SLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDF  379 (399)
Q Consensus       302 ~~~--s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~  379 (399)
                      .+.  .-..+|+    +.++..+ ...+... ..+.+......+..+.|+||.|++.|+.++|+.|+..+++++..+.+|
T Consensus       271 ~~~~~~~g~t~L----~~A~~~~-~~~~~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g  344 (437)
T 1n11_A          271 GNLGNKSGLTPL----HLVAQEG-HVPVADV-LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG  344 (437)
T ss_dssp             TTCCCTTCCCHH----HHHHHHT-CHHHHHH-HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCCCCCHH----HHHHHcC-CHHHHHH-HHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCC
Confidence            110  0001111    1111111 1222222 223344455566778899999999999999999999999999999999


Q ss_pred             hhHHHHhhccc
Q psy1036         380 PTILHVVCSRC  390 (399)
Q Consensus       380 ~~~l~~~~~~~  390 (399)
                      .|+||.|++..
T Consensus       345 ~t~L~~A~~~g  355 (437)
T 1n11_A          345 YSPLHQAAQQG  355 (437)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHCC
Confidence            99999999754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=7.1e-30  Score=238.55  Aligned_cols=219  Identities=16%  Similarity=0.108  Sum_probs=129.6

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCH-HHHHHHHhccCCCCCccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP-AMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~-~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      +..+.++|+.||..|++++|+.||+.............+. .+..|.||||+|+..++. .++++|++.|++        
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad--------   78 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSA-ADPEFCHPLCQCPKCAPAQKRLAKVPASGLG--------   78 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCC--------
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccc-cCccCCCHHHHHHHhCCHHHHHHHHHHCCCC--------
Confidence            5567899999999999999994443322111111111222 355678889988887765 477888888887        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        +|.+|. .|+||||+||..|+.++|++|++.| ++++.++..|.||+++|+..++.+++++|
T Consensus        79 ------------------vn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~~~~g~t~l~~a~~~~~~~~~~~L  138 (269)
T 4b93_B           79 ------------------VNVTSQ-DGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCL  138 (269)
T ss_dssp             ------------------TTCCCT-TSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ------------------CCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcC-CCcCccCCCCCCccccccccChHHHHHHH
Confidence                              788887 5888888888888888888888888 78888888888888888888888888888


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      ++...........+.+....++.....+..+                    .+                           
T Consensus       139 l~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~--------------------~L---------------------------  171 (269)
T 4b93_B          139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVA--------------------LL---------------------------  171 (269)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCGGGHH--------------------HH---------------------------
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH--------------------HH---------------------------
Confidence            8876433222222111111111111001000                    01                           


Q ss_pred             CCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                 .+.+.........+.||||+|++.|+.++|+.|+..|+++++.+.+|.|+||.|++
T Consensus       172 -----------l~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          172 -----------LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             -----------HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             -----------HHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence                       11111222334566799999999999999999999999999999999999999975

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.6e-29  Score=232.14  Aligned_cols=251  Identities=16%  Similarity=0.135  Sum_probs=160.5

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccC
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  163 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~  163 (399)
                      .+|.|+||.|+..|++++|+        +|++.|.+++...+..|+||||+|+..|+.+++++|++.|++          
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~--------~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------   64 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQ--------QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------   64 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH--------HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             cccchHHHHHHHcCCHHHHH--------HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            46889999999999999999        888889888876577899999999999999999999999987          


Q ss_pred             CChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         164 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       164 ~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                      ++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++
T Consensus        65 ----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  126 (285)
T 1wdy_A           65 ----------------PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVKALKFLYK  126 (285)
T ss_dssp             ----------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------------CcccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence                            566666 5777777777777777777777777 6777777777777777777777777777776


Q ss_pred             ccCchhhc----------ccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCC
Q psy1036         244 KLTPTKVA----------TKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASP  313 (399)
Q Consensus       244 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~  313 (399)
                      ........          ...+.+.....+.....+.++.+-...+........         .|         .+|+..
T Consensus       127 ~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---------~g---------~t~l~~  188 (285)
T 1wdy_A          127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN---------MG---------RNALIH  188 (285)
T ss_dssp             TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT---------TS---------CCHHHH
T ss_pred             hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC---------CC---------CCHHHH
Confidence            65332221          111111111111122222222222111111110000         00         000000


Q ss_pred             CccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhh-cCCCeeecCCCchhHHHHhhccc
Q psy1036         314 STVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVW-DNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       314 s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~-~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      ....+... ....+..+ ..+.+......+..+.||||.|++.|+.++|+.|+. .+++++..+.+|.|+||.|++..
T Consensus       189 a~~~~~~~-~~~~i~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          189 ALLSSDDS-DVEAITHL-LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHCSCTT-THHHHHHH-HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHccccc-hHHHHHHH-HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            00000000 00011111 222333444555667899999999999999999999 89999999999999999998754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=4.7e-30  Score=249.20  Aligned_cols=157  Identities=17%  Similarity=0.194  Sum_probs=127.6

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC----C
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP----A  155 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~----~  155 (399)
                      ...+..|+||||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.++|++|++.|++.    +
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~--------~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g   84 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVR--------RLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHG   84 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC
Confidence            345788999999999999999999        88899988887 5778999999999999999999999999863    4


Q ss_pred             CccccccCCChhHHH-HHHhhh----ccCCCC-----------------CCCCCCchHHHHHHHcC--CHHHHHHHHhCC
Q psy1036         156 FTNLLYDSDTPSYIE-RSDILL----DLYVNT-----------------PDKALNETPLHFAAKFG--SVECVKRLIGCA  211 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~-~~~~~~----~~~vn~-----------------~d~~~G~TpLh~Aa~~g--~~~iv~~LL~~g  211 (399)
                      .+++++++..+.... .+++..    +.+++.                 .|. .|+||||+|+..|  +.++|++|+++|
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            567777765443322 233322    444443                 777 5999999999999  899999999998


Q ss_pred             CCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         212 KIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       212 ~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                       ++++.+|..|+||||+|+..|+.+++++|++.+..
T Consensus       164 -a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          164 -ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             -CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence             89999999999999999999999999999987644

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=3.3e-29  Score=228.22  Aligned_cols=218  Identities=22%  Similarity=0.233  Sum_probs=164.1

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccc
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL  160 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~  160 (399)
                      ..+..|.||||+||..|+.++|+.|++    ++.+.|.+++. .+..|+||||+|+..|+.+++++|++.|++       
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------   71 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVN----LFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGAS-------   71 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHH----HHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH----HHHhcCCCCCc-ccccCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            346788999999999999999995552    12246777777 467899999999999999999999999987       


Q ss_pred             ccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCC----CcccCCCCCCcHHHHHHhCCCHH
Q psy1036         161 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKI----QTSVRNKEGKTPLDVCFKMPSVD  236 (399)
Q Consensus       161 ~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a----~~~~~d~~G~TpL~~A~~~g~~~  236 (399)
                                         ++..|. .|+||||+|+..|+.+++++|++.+ +    +++.+|..|+||||+|+..|+.+
T Consensus        72 -------------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~  130 (241)
T 1k1a_A           72 -------------------PMALDR-HGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYDGLTALHVAVNTECQE  130 (241)
T ss_dssp             -------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS-CTTSCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             -------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccccCcCCCcHHHHHHHcCCHH
Confidence                               678887 6999999999999999999999998 5    78888999999999999999999


Q ss_pred             HHHHHHhccCchhhcc-cCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCc
Q psy1036         237 SMGPLSTKLTPTKVAT-KSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPST  315 (399)
Q Consensus       237 iv~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~  315 (399)
                      ++++|++......... ..+.+.....+.....+.++.+-                    ..|                 
T Consensus       131 ~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------------~~g-----------------  173 (241)
T 1k1a_A          131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL--------------------QHG-----------------  173 (241)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH--------------------HTT-----------------
T ss_pred             HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH--------------------HcC-----------------
Confidence            9999998874433322 12111111111111111111111                    111                 


Q ss_pred             cccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         316 VTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                                           ......+..+.|+||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|++.
T Consensus       174 ---------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          174 ---------------------ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             ---------------------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             ---------------------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence                                 11122234567999999999999999999999999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=234.90  Aligned_cols=214  Identities=14%  Similarity=0.088  Sum_probs=167.1

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      ++...+..|+||||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|++.|++    
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----  117 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLR--------NLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQ----  117 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHH--------HHHHTTCCSCE-ECTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHH--------HHHHCCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----
Confidence            34556788999999999999999999        88899988887 477899999999999999999999999987    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                            ++.+|. .|+||||+|+..|+.++|++|+++| ++++..+ .|+||||+|+..|+.++
T Consensus       118 ----------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~g~t~L~~A~~~g~~~~  172 (285)
T 3d9h_A          118 ----------------------VNGVTA-DWHTPLFNACVSGSWDCVNLLLQHG-ASVQPES-DLASPIHEAARRGHVEC  172 (285)
T ss_dssp             ----------------------SSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCSC-TTSCHHHHHHHHTCHHH
T ss_pred             ----------------------CCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCC-CCCCCCC-CCCCHHHHHHHcCCHHH
Confidence                                  788888 6999999999999999999999999 8887654 59999999999999999


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      +++|++...........+.+.....+.....+.++.+.                    ..|.                  
T Consensus       173 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll--------------------~~ga------------------  214 (285)
T 3d9h_A          173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL--------------------ESGA------------------  214 (285)
T ss_dssp             HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH--------------------HTTC------------------
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH--------------------HCCC------------------
Confidence            99999887543333222222111111111112111111                    1110                  


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                          ... .+..+.|+||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|++
T Consensus       215 --------------------~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          215 --------------------DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             --------------------CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             --------------------CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence                                000 13455699999999999999999999999999999999999999984

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=7e-29  Score=238.07  Aligned_cols=262  Identities=14%  Similarity=0.061  Sum_probs=165.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhC-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~-g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      +..+.|+||.||+.|+.+.|+        .++.. +.+++. .+..|+||||+||..|+.+++++|++.|++        
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~--------~ll~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------   83 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLM--------ALLTPLNVNCHA-SDGRKSTPLHLAAGYNRVRIVQLLLQHGAD--------   83 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHH--------HHCCTTTTTCCC-SSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             ccccchhHHHHHHcCCHHHHH--------HHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            345678999999999999999        44443 566665 477899999999999999999999999987        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        84 ------------------~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A           84 ------------------VHAKDK-GGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLL  143 (351)
T ss_dssp             ------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------CCccCC-CCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                              788998 6999999999999999999999999 99999999999999999999999999999


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhh-ccc---cccccChHHHHHHHhcCCccCCC-CCCCCCCCCCcc
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNK-KIR---FKSFRNFQDAQNFAYHGSCGVNT-SLLEAPASPSTV  316 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k-~~r---~~~~~~~~~a~~~a~~~~~~~~~-s~~~~~~~~s~~  316 (399)
                      ++.+.........+...  ++. ....+..+.+.... +..   .-..........+...+...... ....+|+    +
T Consensus       144 l~~g~~~~~~~~~g~~~--l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L----~  216 (351)
T 3utm_A          144 LSHGADPTLVNCHGKSA--VDM-APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL----H  216 (351)
T ss_dssp             HHTTCCTTCCCTTSCCH--HHH-CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH----H
T ss_pred             HHcCCCCccccCCCCcc--hHH-HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH----H
Confidence            99875544333322221  111 11112111111100 000   00000111111111111110000 0000110    0


Q ss_pred             ccCCCC--CCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         317 TAADPS--ALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       317 ~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                      .....+  ....+..+ ..+.+......+..+.||||.|++.|+.++|+.|+..|++++..+.+|.|+||.|++.
T Consensus       217 ~A~~~~~~~~~~~~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          217 CAVASLHPKRKQVAEL-LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA  290 (351)
T ss_dssp             HHHHCCSTTHHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHhCccHHHHHHH-HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            000000  00111111 2223334444555666777777777777777777777777777777777777777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.4e-28  Score=222.97  Aligned_cols=209  Identities=17%  Similarity=0.160  Sum_probs=161.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      +.++||.||..|+++.|+.++...+        ......+..|+||||+|+..|+.+++++|++.|++            
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------   65 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADK--------SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------------   65 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCG--------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhch--------hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC------------
Confidence            4479999999999999995554433        22222466899999999999999999999999887            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    ++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++..
T Consensus        66 --------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  129 (231)
T 3aji_A           66 --------------VNDKDD-AGWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG  129 (231)
T ss_dssp             --------------SCCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --------------CCCcCC-CCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                          788888 6999999999999999999999999 899999999999999999999999999999987


Q ss_pred             CchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCc
Q psy1036         246 TPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALP  325 (399)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~  325 (399)
                      .........+.  ..++.. ...+..++++.+                 ...|                           
T Consensus       130 ~~~~~~~~~g~--t~L~~A-~~~~~~~~v~~L-----------------l~~g---------------------------  162 (231)
T 3aji_A          130 ANPDAKDHYDA--TAMHRA-AAKGNLKMVHIL-----------------LFYK---------------------------  162 (231)
T ss_dssp             CCTTCCCTTSC--CHHHHH-HHHTCHHHHHHH-----------------HHTT---------------------------
T ss_pred             CCCCCcCCCCC--cHHHHH-HHcCCHHHHHHH-----------------HhcC---------------------------
Confidence            54333222222  222211 111122222211                 1011                           


Q ss_pred             ccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         326 QVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       326 ~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                 ......+..+.||||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|.+
T Consensus       163 -----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          163 -----------ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             -----------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             -----------CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence                       0112223456799999999999999999999999999999999999999964

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.1e-28  Score=223.05  Aligned_cols=213  Identities=17%  Similarity=0.115  Sum_probs=154.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      |.||||+||..|+.++|+        +|++.|.+.....+..|+||||+|+..|+.+++++|++.|++.+          
T Consensus         2 g~t~L~~A~~~g~~~~v~--------~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------   63 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQ--------ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN----------   63 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHH--------HHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC----------
T ss_pred             CccHHHHHHHhCCHHHHH--------HHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc----------
Confidence            568999999999999999        66666655444457789999999999999999999999996522          


Q ss_pred             hhHHHHHHhhhccCCCC-CCCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         166 PSYIERSDILLDLYVNT-PDKALNETPLHFAAKFGSVECVKRLIGCA-KIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~-~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g-~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                    ++. .|. .|+||||+|+..|+.+++++|+++| .++++.+|..|+||||+|+..|+.+++++|++
T Consensus        64 --------------~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           64 --------------LDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             --------------GGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------ccccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence                          344 566 5888888888888888888888886 25777788888888888888888888888888


Q ss_pred             ccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCC
Q psy1036         244 KLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA  323 (399)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~  323 (399)
                      .+.........+.+.....+.....+.++.+-                    ..|.                        
T Consensus       129 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------------~~g~------------------------  164 (228)
T 2dzn_A          129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLC--------------------GLGK------------------------  164 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH--------------------TTTC------------------------
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH--------------------hcCc------------------------
Confidence            76443322222222111111111111111111                    0110                        


Q ss_pred             CcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHh-hcCCCeeecCCCchhHHHHhhc
Q psy1036         324 LPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLV-WDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       324 ~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv-~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                   ......+..+.||||.|++.|+.++|+.|+ ..|+++++.+.+|.|+||.|++
T Consensus       165 -------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          165 -------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             -------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             -------------ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence                         111223455679999999999999999999 8999999999999999999975

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=5e-28  Score=218.12  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.++.      
T Consensus        19 ~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~------   83 (223)
T 2f8y_A           19 NQTDRTGETALHLAARYSRSDAAK--------RLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRAT------   83 (223)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHBTTS------
T ss_pred             cccCCCCCchHHHHHHcCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            334678999999999999999999        88899988887 477899999999999999999999999873      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                                         +++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++++
T Consensus        84 -------------------~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~  142 (223)
T 2f8y_A           84 -------------------DLDARMH-DGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAV  142 (223)
T ss_dssp             -------------------CTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             -------------------CcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHH
Confidence                               2678888 6999999999999999999999999 899999999999999999999999999


Q ss_pred             HHHhcc
Q psy1036         240 PLSTKL  245 (399)
Q Consensus       240 ~Ll~~~  245 (399)
                      +|++..
T Consensus       143 ~Ll~~g  148 (223)
T 2f8y_A          143 VLLKNG  148 (223)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            999764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.5e-28  Score=231.56  Aligned_cols=237  Identities=19%  Similarity=0.118  Sum_probs=171.9

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..+.|+||.||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|++.|++         
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------   98 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVL--------RLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN---------   98 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHH--------HHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             ccCCccHHHHHHHcCCHHHHH--------HHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------
Confidence            456789999999999999999        88888988887 467899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..++.++++.++
T Consensus        99 -----------------~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           99 -----------------INQPDN-EGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             -----------------CCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence                             788998 6999999999999999999999999 999999999999999999999999999888


Q ss_pred             hccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCC--CCCCCCCCCCCccccCC
Q psy1036         243 TKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVN--TSLLEAPASPSTVTAAD  320 (399)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~--~s~~~~~~~~s~~~~~~  320 (399)
                      ..........          ........+..+..                 +...+.....  .....+|+    +.++.
T Consensus       160 ~~~~~~~~~~----------~~~~~~~~~~~~~~-----------------~l~~~~~~~~~~~~~g~t~L----~~A~~  208 (299)
T 1s70_B          160 NRQGVDIEAA----------RKEEERIMLRDARQ-----------------WLNSGHINDVRHAKSGGTAL----HVAAA  208 (299)
T ss_dssp             HHHTCCHHHH----------HHHHHHHHHHHHHH-----------------HHHHTCCCCCCCTTTCCCHH----HHHHH
T ss_pred             hhcCCCchhh----------hhhhhhHHHHHHHH-----------------HHhccCcchhhhcCCCCCHH----HHHHH
Confidence            6542110000          00000001111111                 1101110000  00001111    11100


Q ss_pred             CCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         321 PSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       321 ~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                      .+ ...+..+ +.+.+......+..+.||||+|++.|+.++|+.|+..|+++++.+.+|.|+||.|++-
T Consensus       209 ~g-~~~~v~~-Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          209 KG-YTEVLKL-LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HT-CHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             CC-cHHHHHH-HHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            11 1222222 2344444555667778999999999999999999999999999999999999999754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.4e-27  Score=229.03  Aligned_cols=249  Identities=17%  Similarity=0.099  Sum_probs=163.2

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .....+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|+++|++    
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~----  116 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQ--------LLLQHGADVHA-KDKGGLVPLHNACSYGHYEVTELLLKHGAC----  116 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCc-cCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----
Confidence            33445677899999999999999999        88899988887 477899999999999999999999999987    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh------
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK------  231 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~------  231 (399)
                                            ++..|. .|+||||+|+..|+.+++++|+++| ++++..+..|.||+++|+.      
T Consensus       117 ----------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A          117 ----------------------VNAMDL-WQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             ----------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             ----------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCcchHHHhhhhhHHH
Confidence                                  788888 6999999999999999999999999 8999888777777665433      


Q ss_pred             ---------------CCCHHHHHHHHhccCchhhcccCCCCccchhhhh---chHHHHHHHHHhhccccccccChHHHHH
Q psy1036         232 ---------------MPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFD---NKEEALLFIKKNKKIRFKSFRNFQDAQN  293 (399)
Q Consensus       232 ---------------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~k~~r~~~~~~~~~a~~  293 (399)
                                     .+..+.+..++............+.+.....+..   ...+.++.+... ++.+.....      
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~------  245 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNK------  245 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCT------
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCC------
Confidence                           3333333333332211111111111111111111   112222222211 111100000      


Q ss_pred             HHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCee
Q psy1036         294 FAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYL  373 (399)
Q Consensus       294 ~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~  373 (399)
                         .|         .+|+.    .++..+ ...+..+ +.+.+......+..+.||||+|++.|+.++|+.|+..|++.+
T Consensus       246 ---~g---------~t~L~----~A~~~g-~~~~v~~-Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          246 ---DF---------MTPLH----VAAERA-HNDVMEV-LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             ---TC---------CCHHH----HHHHTT-CHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ---CC---------CCHHH----HHHHcC-CHHHHHH-HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence               00         01100    000000 1122222 223333444556677899999999999999999999999999


Q ss_pred             ecCCCchhHHHHhhc
Q psy1036         374 VSSGDFPTILHVVCS  388 (399)
Q Consensus       374 ~~s~d~~~~l~~~~~  388 (399)
                      +.+.+|.|+||.|..
T Consensus       308 ~~~~~g~tal~~a~~  322 (351)
T 3utm_A          308 IISLQGFTAAQMGNE  322 (351)
T ss_dssp             CCCTTSCCHHHHSCH
T ss_pred             CcCCCCCChhhhhhH
Confidence            999999999998843

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=1.2e-28  Score=240.62  Aligned_cols=224  Identities=11%  Similarity=0.042  Sum_probs=172.7

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccC
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  163 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~  163 (399)
                      ..|.||||+||..|+.++|+.|+....+.|++.|++++. .+..|+||||+|+..|+.++|++|+++|++          
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----------  191 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAGAD----------  191 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC-CCCCCCCHHHHHHHcChHHHHHHHHHCCCC----------
Confidence            678999999999999999997776655667799999888 477899999999999999999999999988          


Q ss_pred             CChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC--CCcccCCCCCCcHHHHHHhCC---CHHHH
Q psy1036         164 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK--IQTSVRNKEGKTPLDVCFKMP---SVDSM  238 (399)
Q Consensus       164 ~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~--a~~~~~d~~G~TpL~~A~~~g---~~~iv  238 (399)
                                      ++..|. .|+||||+|+..|+.++|++|++++.  ++++..|..|+||||+|+..+   +.+++
T Consensus       192 ----------------~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v  254 (373)
T 2fo1_E          192 ----------------PTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA  254 (373)
T ss_dssp             ----------------SCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             ----------------CcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHH
Confidence                            788888 69999999999999999999999873  588899999999999999988   89999


Q ss_pred             HHHHhccCchhhcc------cCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCC
Q psy1036         239 GPLSTKLTPTKVAT------KSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPAS  312 (399)
Q Consensus       239 ~~Ll~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~  312 (399)
                      ++|++.+.......      ++......+++.. ..+..++++.+                 ...+              
T Consensus       255 ~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~-~~g~~~~v~~L-----------------l~~~--------------  302 (373)
T 2fo1_E          255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA-QVSNMPIVKYL-----------------VGEK--------------  302 (373)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH-SSCCHHHHHHH-----------------HHHS--------------
T ss_pred             HHHHHCCCCcccccccccCcccccCCCHHHHHH-HhCCHHHHHHH-----------------HHhc--------------
Confidence            99998874432210      1101111121111 11111111111                 0011              


Q ss_pred             CCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         313 PSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       313 ~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                                             +......+..+.||||+|++.|+.++|+.|+..|+++++.+.+|.|+||.|++.-
T Consensus       303 -----------------------~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          303 -----------------------GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             -----------------------CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             -----------------------CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcC
Confidence                                   1122233456679999999999999999999999999999999999999998753

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=2.8e-28  Score=229.38  Aligned_cols=128  Identities=17%  Similarity=0.149  Sum_probs=118.8

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|++++..   .|+||||+|+..|+.+++++|+++|++      
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~------   87 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVC--------TLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLD------   87 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCC------
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHH--------HHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence            445678899999999999999999        888999887764   489999999999999999999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC-CcHHHHHHhCCCHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEG-KTPLDVCFKMPSVDSM  238 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G-~TpL~~A~~~g~~~iv  238 (399)
                                          +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..| .||||+|+..|+.+++
T Consensus        88 --------------------~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~~~~~~~v  145 (285)
T 3kea_A           88 --------------------DSQFDD-KGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIV  145 (285)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHHTTCHHHH
T ss_pred             --------------------CCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence                                788998 6999999999999999999999999 9999999999 7999999999999999


Q ss_pred             HHHHhccC
Q psy1036         239 GPLSTKLT  246 (399)
Q Consensus       239 ~~Ll~~~~  246 (399)
                      ++|++...
T Consensus       146 ~~Ll~~g~  153 (285)
T 3kea_A          146 SYFLSEIP  153 (285)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHhCCC
Confidence            99999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=214.84  Aligned_cols=217  Identities=14%  Similarity=0.082  Sum_probs=165.7

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      .+..+.|+||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++        
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--------   67 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCR--------ELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKYYISKGAI--------   67 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             cccccchHHHHHHHcCChHHHH--------HHHHcCCCcCC-CCCCCCCHHHHHHHhCCHHHHHHHHHcCCc--------
Confidence            3567788999999999999999        88889988777 466899999999999999999999999987        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        ++..+...|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        68 ------------------~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  128 (240)
T 3eu9_A           68 ------------------VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYL  128 (240)
T ss_dssp             ------------------TTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------chhhcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCHHHHHHHH
Confidence                              44433325999999999999999999999999 99999999999999999999999999999


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      ++...........+  ...++...         .  .+....       ..++.                          
T Consensus       129 l~~~~~~~~~~~~g--~t~l~~a~---------~--~~~~~~-------~~~~L--------------------------  162 (240)
T 3eu9_A          129 IAKGQDVDMMDQNG--MTPLMWAA---------Y--RTHSVD-------PTRLL--------------------------  162 (240)
T ss_dssp             HHTTCCTTCCCTTS--CCHHHHHH---------H--HCCSST-------THHHH--------------------------
T ss_pred             HhcCCCccccCCCC--CcHHHHHH---------H--hCChHH-------HHHHH--------------------------
Confidence            99864432222221  11221111         0  000000       00111                          


Q ss_pred             CCCcccccccccCCCCCCCCCch-HHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKS-QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~-~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                                 .+.+........ .+.|+||.|++.|+.++|+.|+..|+++++.+.+|.|+||.|++...
T Consensus       163 -----------~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          163 -----------LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             -----------HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             -----------HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence                       001111111222 45689999999999999999999999999999999999999987643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=4.6e-27  Score=218.56  Aligned_cols=226  Identities=14%  Similarity=0.021  Sum_probs=133.4

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------CC
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------AF  156 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------~~  156 (399)
                      +..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|+++|++.      +.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  106 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVE--------LLLRHGADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF  106 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCC
T ss_pred             CCCCCcHHHHHHHcCCHHHHH--------HHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccC
Confidence            456789999999999999999        88899988887 4678999999999999999999999999872      22


Q ss_pred             ccccccCCChhHHH-HHHhhhccCCCCC----------CCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCCc
Q psy1036         157 TNLLYDSDTPSYIE-RSDILLDLYVNTP----------DKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKT  224 (399)
Q Consensus       157 ~~l~~a~~~~~~~~-~~~~~~~~~vn~~----------d~~~G~TpLh~Aa~~g~~~iv~~LL~~-g~a~~~~~d~~G~T  224 (399)
                      +++++++..+.... .+++..+.+++..          +. .|.||||+|+..|+.+++++|++. | ++++.+|..|+|
T Consensus       107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t  184 (285)
T 1wdy_A          107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-GGATALMDAAEKGHVEVLKILLDEMG-ADVNACDNMGRN  184 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC-CCCCHHHHHHHHTCHHHHHHHHHTSC-CCTTCCCTTSCC
T ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhcc-CCCcHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCC
Confidence            33333332222111 2333333334433          33 344555555555555555555544 3 444555555555


Q ss_pred             HHHHHHhCCC----HHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCc
Q psy1036         225 PLDVCFKMPS----VDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSC  300 (399)
Q Consensus       225 pL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~  300 (399)
                      |||+|+..++    .+++++|++...........+.+.....+...                                  
T Consensus       185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----------------------------------  230 (285)
T 1wdy_A          185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK----------------------------------  230 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT----------------------------------
T ss_pred             HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC----------------------------------
Confidence            5555555444    44444444443222111111111111011000                                  


Q ss_pred             cCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecC
Q psy1036         301 GVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS  376 (399)
Q Consensus       301 ~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s  376 (399)
                                             ...+........+......+..+.||||.|++.|+.++|+.|+..|+++++.+
T Consensus       231 -----------------------~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          231 -----------------------HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             -----------------------CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             -----------------------CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence                                   11111111111233344455677899999999999999999999999998764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=2.2e-27  Score=206.13  Aligned_cols=129  Identities=25%  Similarity=0.313  Sum_probs=120.3

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccc
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL  160 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~  160 (399)
                      ..+..|.||||+|+..|+.++++        +|++.|++++. ++..|+||||+||..|+.++|++|++.|++       
T Consensus        32 ~~d~~g~t~l~~a~~~~~~~~~~--------~ll~~gad~~~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-------   95 (169)
T 4gpm_A           32 ASDSDGRTPLHHAAENGHKEVVK--------LLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGAD-------   95 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHH--------HHHhcccchhh-hccCCCCHHHHHHHcCCHHHHHHHHHCcCC-------
Confidence            34678899999999999999999        88899999888 577899999999999999999999999998       


Q ss_pred             ccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHH
Q psy1036         161 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGP  240 (399)
Q Consensus       161 ~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~  240 (399)
                                         +|.+|. .|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+|+.+|+.+++++
T Consensus        96 -------------------vn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           96 -------------------VNAKDS-DGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             -------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             -------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                               899998 6999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHhccC
Q psy1036         241 LSTKLT  246 (399)
Q Consensus       241 Ll~~~~  246 (399)
                      |++++.
T Consensus       155 Ll~~GA  160 (169)
T 4gpm_A          155 LEKQGG  160 (169)
T ss_dssp             HHTC--
T ss_pred             HHHCCC
Confidence            999874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=4.2e-27  Score=208.59  Aligned_cols=126  Identities=13%  Similarity=0.169  Sum_probs=112.9

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD-FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~-~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      ..+.||||.||..|+.+.|+        .|+..+. +++. .+..|+||||+|+..|+.+++++|++.|++         
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~--------~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   64 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVK--------EILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGAD---------   64 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHH--------HHHTCTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             cccccHHHHHHHhccHHHHH--------HHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            35678999999999999999        6666664 6666 466899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       ++.+|. .|+||||+|+..|+.+++++|++.+.++++.+|..|+||||+|+..|+.+++++|+
T Consensus        65 -----------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (201)
T 3hra_A           65 -----------------INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL  126 (201)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred             -----------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence                             788888 69999999999999999999996555899999999999999999999999999999


Q ss_pred             hcc
Q psy1036         243 TKL  245 (399)
Q Consensus       243 ~~~  245 (399)
                      +..
T Consensus       127 ~~g  129 (201)
T 3hra_A          127 EDG  129 (201)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=224.13  Aligned_cols=217  Identities=17%  Similarity=0.058  Sum_probs=141.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCCh-----hhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPR-----YLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~-----~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      ...+.|+||+|+..|+.+.+..++...|+     .++..+   ....+..|+||||+||..|+.+++++|++.|++    
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----   84 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP---LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA----   84 (285)
T ss_dssp             ------------------------------CCSEECCCCT---TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCc---ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC----
Confidence            45678999999999999888877665543     233332   122577899999999999999999999999887    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                            +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.++
T Consensus        85 ----------------------~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~  140 (285)
T 3d9h_A           85 ----------------------VNIITA-DHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDC  140 (285)
T ss_dssp             ----------------------SCEECT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             ----------------------CCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHH
Confidence                                  788998 6999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      +++|++........  +.+ ...++. ....+..++++.+                 ...|                   
T Consensus       141 v~~Ll~~g~~~~~~--~~g-~t~L~~-A~~~g~~~~v~~L-----------------l~~g-------------------  180 (285)
T 3d9h_A          141 VNLLLQHGASVQPE--SDL-ASPIHE-AARRGHVECVNSL-----------------IAYG-------------------  180 (285)
T ss_dssp             HHHHHHTTCCSSCS--CTT-SCHHHH-HHHHTCHHHHHHH-----------------HHTT-------------------
T ss_pred             HHHHHHCCCCCCCC--CCC-CCHHHH-HHHcCCHHHHHHH-----------------HHCC-------------------
Confidence            99999987443221  111 111211 1111122222211                 1111                   


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                                         ......+..+.|+||.|++.|+.++|+.|+..+++++. ..+|.|+||.|++..
T Consensus       181 -------------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          181 -------------------GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTA  233 (285)
T ss_dssp             -------------------CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTT
T ss_pred             -------------------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcC
Confidence                               11122334566999999999999999999999999995 778899999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=7.3e-28  Score=219.40  Aligned_cols=128  Identities=20%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCC----CCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD----FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~----~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .+..|.||||+||..|+.++|+        +|++.+.    +++. .+..|+||||+|+..|+.+++++|++.|++    
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----   70 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTM--------EVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCD----   70 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSS--------CCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCC----
T ss_pred             CCCCCCchhHHHHHcCChhHHH--------HHHHHhhccHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----
Confidence            4677889999999999999999        6666653    4555 466899999999999999999999999887    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC------cccCCCCCCcHHHHHHh
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ------TSVRNKEGKTPLDVCFK  231 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~------~~~~d~~G~TpL~~A~~  231 (399)
                                            ++.+|. .|+||||+|+..|+.+++++|++.| ++      ++..|..|+||||+|+.
T Consensus        71 ----------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           71 ----------------------PELRDF-RGNTPLHLACEQGCLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             ----------------------SCCCCT-TCCCHHHHHHHHTCHHHHHHHHHST-TTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             ----------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc-cchhHHHHhhccCCCCCCHHHHHHH
Confidence                                  788888 6999999999999999999999998 54      57788999999999999


Q ss_pred             CCCHHHHHHHHhccC
Q psy1036         232 MPSVDSMGPLSTKLT  246 (399)
Q Consensus       232 ~g~~~iv~~Ll~~~~  246 (399)
                      .|+.+++++|++.+.
T Consensus       127 ~~~~~~v~~Ll~~g~  141 (236)
T 1ikn_D          127 HGYLGIVELLVSLGA  141 (236)
T ss_dssp             TTCHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=8.1e-28  Score=221.82  Aligned_cols=197  Identities=17%  Similarity=0.145  Sum_probs=158.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhccCCCCCccc
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI---LHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~---~~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      |.||||+||..|+.+.|+.|+    ++|++.|.+++.   ..+..|+||||+|+..   |+.+++++|++.|++.+....
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll----~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLL----EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHH----HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred             CccHHHHHHHcCCHHHHHHHH----HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence            689999999999998776555    267778888776   3477899999999999   999999999999987432221


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC-------------CCcHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKE-------------GKTPL  226 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~-------------G~TpL  226 (399)
                      .               ........|. .|+||||+|+..|+.++|++|+++| ++++.+|..             |+|||
T Consensus        78 ~---------------~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           78 L---------------VNAQCTDEFY-QGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPL  140 (256)
T ss_dssp             G---------------GGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSHH
T ss_pred             h---------------cccccccccc-cCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccccccccccccccccCCCCHH
Confidence            1               0111233455 6999999999999999999999999 999999986             99999


Q ss_pred             HHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCC
Q psy1036         227 DVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSL  306 (399)
Q Consensus       227 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~  306 (399)
                      |+|+..|+.+++++|++...                                                  .|.       
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~--------------------------------------------------~ga-------  163 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPH--------------------------------------------------QPA-------  163 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSS--------------------------------------------------CCC-------
T ss_pred             HHHHHcCCHHHHHHHHhccc--------------------------------------------------cCC-------
Confidence            99999999999999997320                                                  000       


Q ss_pred             CCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHh--hcCHH-------HHHHHhhcCCCe-----
Q psy1036         307 LEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIE--KGNLA-------DVRKLVWDNPRY-----  372 (399)
Q Consensus       307 ~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq--~G~~~-------~v~~lv~~~~~~-----  372 (399)
                                                     .....+..+.||||.|++  .|+.+       +|+.|+..|+++     
T Consensus       164 -------------------------------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  212 (256)
T 2etb_A          164 -------------------------------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ  212 (256)
T ss_dssp             -------------------------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             -------------------------------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence                                           001122355789999999  88988       999999999999     


Q ss_pred             --eecCCCchhHHHHhhcccc
Q psy1036         373 --LVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       373 --~~~s~d~~~~l~~~~~~~~  391 (399)
                        ++.+.+|.|+||.|++..+
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTC
T ss_pred             cccccCCCCCCHHHHHHHhCC
Confidence              8999999999999987643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=9.5e-27  Score=199.27  Aligned_cols=122  Identities=20%  Similarity=0.238  Sum_probs=113.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      ..||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+. |+.+++++|++.|++            
T Consensus         5 ~~~~L~~A~~~g~~~~v~--------~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------   62 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLT--------SLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRGAN------------   62 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHH--------HHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCC------------
T ss_pred             HhhHHHHHHHcCCHHHHH--------HHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCC------------
Confidence            458999999999999999        88888988877 47789999999999 999999999999887            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++..
T Consensus        63 --------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           63 --------------PDLKDR-TGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             --------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             --------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence                          788888 6999999999999999999999999 999999999999999999999999999999753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=1.1e-26  Score=214.10  Aligned_cols=145  Identities=14%  Similarity=0.121  Sum_probs=116.3

Q ss_pred             hhhhcCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy1036          70 LAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE  149 (399)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~  149 (399)
                      .+...........+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++
T Consensus        41 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAK--------RLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             -----------CCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHccCCcccccCCCCCcHHHHHHHcCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3333333333345678999999999999999999        88899988887 47789999999999999999999999


Q ss_pred             ccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHH
Q psy1036         150 IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC  229 (399)
Q Consensus       150 ~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A  229 (399)
                      .++.                         +++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|
T Consensus       112 ~~~~-------------------------~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A          112 NRAT-------------------------DLDARMH-DGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             STTS-------------------------CTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTSCBHHHHH
T ss_pred             cCCC-------------------------CccccCC-CCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence            9873                         1677777 6889999999888888999999888 88888888899999999


Q ss_pred             HhCCCHHHHHHHHhccCchhh
Q psy1036         230 FKMPSVDSMGPLSTKLTPTKV  250 (399)
Q Consensus       230 ~~~g~~~iv~~Ll~~~~~~~~  250 (399)
                      +..|+.+++++|++.+.....
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDM  185 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            988889999988887754433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=6.1e-27  Score=202.79  Aligned_cols=170  Identities=14%  Similarity=0.109  Sum_probs=139.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      +.||||.||..|+.++|+        +|++.+.......+..|+||||+|+..|+.+++++|++.|++            
T Consensus         2 ~~~~L~~A~~~g~~~~v~--------~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------   61 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLK--------EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------------   61 (172)
T ss_dssp             --CCHHHHHHTTCHHHHH--------HHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------------
T ss_pred             chhhHHHHHHcCCHHHHH--------HHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            356999999999999999        666766552223577899999999999999999999999987            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    ++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++..
T Consensus        62 --------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           62 --------------PHILAK-ERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             --------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --------------chhhcc-cCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                          788888 6999999999999999999999999 999999999999999999999999999998653


Q ss_pred             CchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCc
Q psy1036         246 TPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALP  325 (399)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~  325 (399)
                      ...                                                                             
T Consensus       126 a~~-----------------------------------------------------------------------------  128 (172)
T 3v30_A          126 ADL-----------------------------------------------------------------------------  128 (172)
T ss_dssp             CCT-----------------------------------------------------------------------------
T ss_pred             CCc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhH
Q psy1036         326 QVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI  382 (399)
Q Consensus       326 ~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~  382 (399)
                                    ...+..+.||||+|++.|+.++|+.|+..++++...+..+.|+
T Consensus       129 --------------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          129 --------------TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             --------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             --------------cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence                          0011234589999999999999999999999999886666553

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=7.7e-26  Score=217.12  Aligned_cols=159  Identities=15%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCC-------------------------hhhhhCCCCCcccCCCCCCcHHHHHHH
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNP-------------------------RYLVSSGDFPTILHEGCRYNALHVSTK  137 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p-------------------------~~Ll~~g~~~~~~~d~~g~T~LH~Aa~  137 (399)
                      +..|+||||+||..|+.++|+.||+.+.                         ..++..+.+++. .+..|+||||+|+.
T Consensus        56 ~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~t~l~~A~~  134 (337)
T 4g8k_A           56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAV  134 (337)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-BCTTCCBHHHHHHH
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhh-hccCCCCHHHHHHH
Confidence            3458999999999999999996665432                         233444555555 46678888888888


Q ss_pred             cCCHHHHHHHHhccCCCC----------------CccccccCCChhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcC
Q psy1036         138 AVNPAMTEMLLEIIGNPA----------------FTNLLYDSDTPSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFG  199 (399)
Q Consensus       138 ~g~~~iv~~Ll~~ga~~~----------------~~~l~~a~~~~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g  199 (399)
                      .|+.+++++|++.|++.+                .+++++++..+....  .++...++++|.+|. .|+||||+++..+
T Consensus       135 ~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~  213 (337)
T 4g8k_A          135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSS  213 (337)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHS
T ss_pred             cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHc
Confidence            888888888888887643                234444432222111  222223556666665 4666666655443


Q ss_pred             C----HHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         200 S----VECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       200 ~----~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      .    ..++++|+++| ++++.+|..|+||||+|+..|+.++++.|++.
T Consensus       214 ~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          214 DDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             CTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             CcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            2    23556666666 56666666666666666666666666666553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=1.7e-26  Score=209.23  Aligned_cols=132  Identities=17%  Similarity=0.167  Sum_probs=117.5

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|+++|++      
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------   98 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEIVE--------FLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVKGAH------   98 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHH--------HHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred             hcCCCCCCCHHHHHHHcCcHHHHH--------HHHHhCCCCCC-cCCCCCCHHHHHHHcCHHHHHHHHHHcCCC------
Confidence            345678899999999999999999        88899988887 477899999999999999999999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                                          ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++++
T Consensus        99 --------------------~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           99 --------------------VNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             --------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence                                778887 6999999999999999999999999 899999999999999999999999999


Q ss_pred             HHHhccCch
Q psy1036         240 PLSTKLTPT  248 (399)
Q Consensus       240 ~Ll~~~~~~  248 (399)
                      +|++.....
T Consensus       157 ~Ll~~g~~~  165 (231)
T 3aji_A          157 ILLFYKAST  165 (231)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHhcCCCc
Confidence            999876443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=1.1e-26  Score=225.46  Aligned_cols=153  Identities=18%  Similarity=0.140  Sum_probs=131.3

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc----cCC--
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI----IGN--  153 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~----ga~--  153 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|++++.   ..|+||||+|+..|+.+++++|++.    |++  
T Consensus        47 ~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  115 (364)
T 3ljn_A           47 TIQNRFGCTALHLACKFGCVDTAK--------YLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE  115 (364)
T ss_dssp             TCCCTTCCCHHHHHHHHCCHHHHH--------HHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHH--------HHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence            344677889999999999999999        88888875543   3689999999999999999999998    443  


Q ss_pred             ---------------------CCCccccccCCCh--hH-HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy1036         154 ---------------------PAFTNLLYDSDTP--SY-IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  209 (399)
Q Consensus       154 ---------------------~~~~~l~~a~~~~--~~-~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~  209 (399)
                                           .+.+++++++..+  .. +..+++..++++|..|. .|+||||+|+..|+.++|++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~  194 (364)
T 3ljn_A          116 SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNREALDLMMD  194 (364)
T ss_dssp             HHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence                                 3567888887665  22 22566667899999998 69999999999999999999999


Q ss_pred             CCCCC-----cccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         210 CAKIQ-----TSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       210 ~g~a~-----~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      +| ++     ++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       195 ~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          195 TV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG  234 (364)
T ss_dssp             HC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred             cc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            99 78     9999999999999999999999999999753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=9e-27  Score=217.00  Aligned_cols=202  Identities=13%  Similarity=0.068  Sum_probs=155.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCc---ccCCCCCCcHHHHHHHc---CCHHHHHHHHhccCC
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT---ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGN  153 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~---~~~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~ga~  153 (399)
                      ...+..|.||||+||..|+.++|+.||+.    +.+.+.+.+   ...+..|+||||+||..   |+.+++++|++.|++
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPF----LQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHH----HHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHH----HhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            34578899999999999999999955522    223454433   23467899999999987   999999999999876


Q ss_pred             CCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-------------
Q psy1036         154 PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK-------------  220 (399)
Q Consensus       154 ~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~-------------  220 (399)
                      .+...               ......++..|. .|+||||+|+..|+.++|++|+++| ++++.++.             
T Consensus        83 ~~~~~---------------~~i~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~  145 (273)
T 2pnn_A           83 TDSLK---------------QFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGF  145 (273)
T ss_dssp             TTCHH---------------HHHTCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBCSGGGSSCSSSCCC
T ss_pred             ccchh---------------HHhhcccccccC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccccccccccccccccc
Confidence            33211               111222344666 6999999999999999999999999 99999997             


Q ss_pred             -CCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCC
Q psy1036         221 -EGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGS  299 (399)
Q Consensus       221 -~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~  299 (399)
                       .|+||||+|+..|+.+++++|++...                                                  .|.
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~--------------------------------------------------~ga  175 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSW--------------------------------------------------QPA  175 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSS--------------------------------------------------CCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccc--------------------------------------------------CCC
Confidence             79999999999999999999997421                                                  000


Q ss_pred             ccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcC---------HHHHHHHhhcCC
Q psy1036         300 CGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN---------LADVRKLVWDNP  370 (399)
Q Consensus       300 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~---------~~~v~~lv~~~~  370 (399)
                                                            .....+..+.||||.|++.|+         .++|+.|+..|+
T Consensus       176 --------------------------------------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          176 --------------------------------------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             --------------------------------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence                                                  001112345689999999999         899999999999


Q ss_pred             Cee-------ecCCCchhHHHHhhccc
Q psy1036         371 RYL-------VSSGDFPTILHVVCSRC  390 (399)
Q Consensus       371 ~~~-------~~s~d~~~~l~~~~~~~  390 (399)
                      +++       +...+|.|+||.|++..
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             hcccccccccccCCCCCCHHHHHHHhC
Confidence            997       57999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=9.8e-27  Score=223.17  Aligned_cols=220  Identities=12%  Similarity=-0.039  Sum_probs=155.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhH
Q psy1036          89 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  168 (399)
Q Consensus        89 ~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~  168 (399)
                      .+|.|+..+..++++        +|++.|.+++...+..|+||||+||..|+.++|++||++|++               
T Consensus       100 ~~~~a~~~~~~~~~~--------~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---------------  156 (327)
T 1sw6_A          100 QQHVSFDSLLQEVND--------AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---------------  156 (327)
T ss_dssp             ----CHHHHHHHHHH--------HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------------
T ss_pred             hhHHHHHhhHHHHHH--------HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------------
Confidence            468888888888888        888999999885577899999999999999999999999998               


Q ss_pred             HHHHHhhhccCCCCCCCCCCchHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCcHHHHHHh----CCCHHHHHHH
Q psy1036         169 IERSDILLDLYVNTPDKALNETPLHFAAKFGS---VECVKRLIGCAKIQTSVRNKEGKTPLDVCFK----MPSVDSMGPL  241 (399)
Q Consensus       169 ~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~---~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~----~g~~~iv~~L  241 (399)
                                 +|.+|. .|+||||+|+..|+   .++++.|++++.++++.+|..|+||||+|+.    .|+.+++++|
T Consensus       157 -----------~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L  224 (327)
T 1sw6_A          157 -----------RLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY  224 (327)
T ss_dssp             -----------TTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             -----------CCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH
Confidence                       889998 69999999999998   7888888888767899999999999999999    9999999999


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      ++.+........  +.  .+......          +++.....         ...|         .+|+    +...  
T Consensus       225 l~~~~~~~~~~~--~~--~i~~~~~~----------~g~~~~~~---------~~~g---------~t~L----~~a~--  266 (327)
T 1sw6_A          225 LDILMGWIVKKQ--NR--PIQSGTNE----------KESKPNDK---------NGER---------KDSI----LENL--  266 (327)
T ss_dssp             HHHHHHHHHHGG--GC--CEEEC--------------------------------------------CHH----HHHC--
T ss_pred             HHHHHHHHhccc--ch--HHHhhhhc----------ccCCcccc---------cccC---------CChh----HHHH--
Confidence            986522111100  00  00000000          00000000         0000         0000    0000  


Q ss_pred             CCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                          .+.-++..    .....+..+.||||+|++.|+.++|+.|+..|+++++.+.+|.|+||.|++.
T Consensus       267 ----~~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          267 ----DLKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ----SHHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             ----HHHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence                00001110    1234456778999999999999999999999999999999999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.2e-25  Score=187.36  Aligned_cols=126  Identities=25%  Similarity=0.274  Sum_probs=116.9

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      +...+.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|++.|++        
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVR--------ILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGAD--------   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------
T ss_pred             ccccccHHHHHHHHhCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            4567889999999999999999        88899988887 477899999999999999999999999887        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        73 ------------------~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           73 ------------------VNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             ------------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence                              788998 6999999999999999999999999 99999999999999999999999999999


Q ss_pred             Hhc
Q psy1036         242 STK  244 (399)
Q Consensus       242 l~~  244 (399)
                      ++.
T Consensus       133 l~~  135 (136)
T 2jab_A          133 QKL  135 (136)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.8e-25  Score=193.24  Aligned_cols=151  Identities=24%  Similarity=0.235  Sum_probs=96.6

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------C
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------A  155 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------~  155 (399)
                      +...+.++||+||+.|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|+++|++.      +
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   80 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVR--------ILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG   80 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCcccchHHHHHHcCCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            3456678999999999999999        88899988887 4678999999999999999999999999872      2


Q ss_pred             CccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         156 FTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                      .+++++++..+.... .+++..+++++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCC
Confidence            233444433222211 333334444555554 3555555555555555555555555 4555555555555555555555


Q ss_pred             HHHHHHHHh
Q psy1036         235 VDSMGPLST  243 (399)
Q Consensus       235 ~~iv~~Ll~  243 (399)
                      .+++++|++
T Consensus       159 ~~~~~~L~~  167 (169)
T 2y1l_E          159 EDLAEILQK  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.4e-26  Score=211.23  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=114.9

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc---CCCCCCcHHHHHH---HcCCHHHHHHHHhccCCCCCc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL---HEGCRYNALHVST---KAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~---~d~~g~T~LH~Aa---~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .-++|+||.||+.|+.+.|+.|++    +|++.|.+++..   .+..|+||||+|+   ..|+.+++++|++.|++++..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~----~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLS----FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHH----HHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHH----HHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            457899999999999998886552    455677766642   2367999999999   679999999999998764321


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC--------------CCCC
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN--------------KEGK  223 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d--------------~~G~  223 (399)
                      .               ...+..++..|. .|+||||+||..|+.++|++|+++| ++++.+|              ..|+
T Consensus        79 ~---------------~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~  141 (260)
T 3jxi_A           79 R---------------EFINSPFRDVYY-RGQTALHIAIERRCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGE  141 (260)
T ss_dssp             H---------------HHHTCCBCCSSE-ESBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCS
T ss_pred             H---------------hhhccccccccc-CCCCHHHHHHHcCCHHHHHHHHhCC-CCcCccccccccCcccccccccCCC
Confidence            1               112344667777 6999999999999999999999999 9999999              6899


Q ss_pred             cHHHHHHhCCCHHHHHHHHh
Q psy1036         224 TPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       224 TpL~~A~~~g~~~iv~~Ll~  243 (399)
                      ||||+|+..|+.+++++|++
T Consensus       142 tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A          142 LPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             SHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999998

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=5.5e-26  Score=189.48  Aligned_cols=129  Identities=20%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +...+..+.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+. |+.+++++|+++|++     
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----   69 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVR--------QLLEAGADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHGAE-----   69 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-----
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHH--------HHHHcCCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-----
Confidence            3445678889999999999999999        88899988887 46789999999999 999999999999987     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCC-CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~-G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                           +|.+|. . |+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.++
T Consensus        70 ---------------------~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           70 ---------------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             ---------------------SSCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHH
T ss_pred             ---------------------CCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence                                 788998 7 999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy1036         238 MGPLSTKL  245 (399)
Q Consensus       238 v~~Ll~~~  245 (399)
                      +++|++.+
T Consensus       127 ~~~Ll~~G  134 (136)
T 1d9s_A          127 ARYLHAAT  134 (136)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99999865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=9.7e-26  Score=205.16  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=119.8

Q ss_pred             CCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC
Q psy1036          77 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  156 (399)
Q Consensus        77 ~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~  156 (399)
                      ..+...+..|.||||+|+..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.++..  
T Consensus        37 ~~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~--  105 (241)
T 1k1a_A           37 RELDIYNNLRQTPLHLAVITTLPSVVR--------LLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPG--  105 (241)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT--
T ss_pred             CCCCcccccCCCHHHHHHHcCCHHHHH--------HHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--
Confidence            344555678899999999999999999        88899988887 4678999999999999999999999998741  


Q ss_pred             ccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCcHHHHHHhCCCH
Q psy1036         157 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDVCFKMPSV  235 (399)
Q Consensus       157 ~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~  235 (399)
                                          +.+++..|. .|+||||+|+..|+.+++++|+++| ++++..+ ..|+||||+|+..|+.
T Consensus       106 --------------------~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A          106 --------------------TLDLEARNY-DGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             --------------------SCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             --------------------cccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCH
Confidence                                123677887 6999999999999999999999999 8888888 7899999999999999


Q ss_pred             HHHHHHHhccCchh
Q psy1036         236 DSMGPLSTKLTPTK  249 (399)
Q Consensus       236 ~iv~~Ll~~~~~~~  249 (399)
                      +++++|++.+....
T Consensus       164 ~~v~~Ll~~g~~~~  177 (241)
T 1k1a_A          164 SMVQLLLQHGANVN  177 (241)
T ss_dssp             HHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999998865433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=1.5e-25  Score=210.81  Aligned_cols=235  Identities=12%  Similarity=0.022  Sum_probs=160.9

Q ss_pred             HHHHcCCHHHHHHHHhhCChh--hhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHH
Q psy1036          92 KLIEKGNLADVRKLVWDNPRY--LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI  169 (399)
Q Consensus        92 ~Aa~~G~~~~v~~Ll~~~p~~--Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~  169 (399)
                      .++..|..+.++.++......  ....+....  .+..|.||||+||..|+.++|++|++.|++                
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------   65 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGAVFLAACSSGDTEEVLRLLERGAD----------------   65 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCC--CEECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccc--cccCCccHHHHHHHcCCHHHHHHHHHcCCC----------------
Confidence            467778888888666553311  111111111  133577999999999999999999999987                


Q ss_pred             HHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchh
Q psy1036         170 ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTK  249 (399)
Q Consensus       170 ~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~  249 (399)
                                +|..|. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|++......
T Consensus        66 ----------~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  133 (299)
T 1s70_B           66 ----------INYANV-DGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG  133 (299)
T ss_dssp             ----------TTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ----------CcccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence                      788998 6999999999999999999999999 9999999999999999999999999999999875443


Q ss_pred             hcccCCCCccchhhhhchHHHHHHHHHh---hccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcc
Q psy1036         250 VATKSEGTEEGERVFDNKEEALLFIKKN---KKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQ  326 (399)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~  326 (399)
                      .....+.  ..++ +....+..++++..   .+......  ......... ..                           
T Consensus       134 ~~~~~g~--t~l~-~A~~~~~~~~~~~ll~~~~~~~~~~--~~~~~~~~~-~~---------------------------  180 (299)
T 1s70_B          134 AVNSEGD--TPLD-IAEEEAMEELLQNEVNRQGVDIEAA--RKEEERIML-RD---------------------------  180 (299)
T ss_dssp             CCCTTSC--CHHH-HCCSHHHHHHHHHHHHHHTCCHHHH--HHHHHHHHH-HH---------------------------
T ss_pred             CcCCCCC--CHHH-HHHhcchHHHHHHHHhhcCCCchhh--hhhhhhHHH-HH---------------------------
Confidence            3333322  2222 22233334444321   22111110  000000000 00                           


Q ss_pred             cccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         327 VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       327 ~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      +..+ ..............+.|+||.|+..|+.++|+.|+..|+++++.+.+|.|+||.|++..
T Consensus       181 ~~~~-l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          181 ARQW-LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             HHHH-HHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHH-HhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcC
Confidence            0000 00011111122345679999999999999999999999999999999999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=1.5e-25  Score=208.55  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=100.0

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.+++......
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  109 (282)
T 1oy3_D           39 DLQNDLGQTALHLAAILGEASTVE--------KLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS  109 (282)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHH--------HHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhH
Confidence            345678899999999999999999        88899999887 477899999999999999999999998865221100


Q ss_pred             -------------------cccCCChhHHH--HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccC
Q psy1036         160 -------------------LYDSDTPSYIE--RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR  218 (399)
Q Consensus       160 -------------------~~a~~~~~~~~--~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~  218 (399)
                                         +..........  ......+.+++.+|. .|+||||+|+..|+.++|++|+++| ++++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~  187 (282)
T 1oy3_D          110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKP  187 (282)
T ss_dssp             ----------------------------------CCCGGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC
T ss_pred             HHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence                               00000000000  111122334555555 4666666666666666666666666 555555


Q ss_pred             CCC-CCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         219 NKE-GKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       219 d~~-G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                      +.. |+||||+|+.+|+.+++++|++.+..
T Consensus       188 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad  217 (282)
T 1oy3_D          188 EPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (282)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            533 66666666666666666666655433

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=2.5e-25  Score=196.18  Aligned_cols=152  Identities=21%  Similarity=0.077  Sum_probs=95.2

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------
Q psy1036          81 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------  154 (399)
Q Consensus        81 ~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------  154 (399)
                      ..+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++.      
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  100 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAID--------KLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS  100 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHH--------HHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHH--------HHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            35678899999999999999999        77788887776 4668999999999999999999999999872      


Q ss_pred             CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC
Q psy1036         155 AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP  233 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g  233 (399)
                      +.+++++++..+.... .+++..++++|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhC
Confidence            2233333332221111 233333444444444 3444444444444444444444444 444444444444444444444


Q ss_pred             CHHHHHHHHh
Q psy1036         234 SVDSMGPLST  243 (399)
Q Consensus       234 ~~~iv~~Ll~  243 (399)
                      +.+++++|++
T Consensus       179 ~~~~v~~Ll~  188 (192)
T 2rfm_A          179 RQEVIKIFTE  188 (192)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            4444444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=5e-25  Score=215.02  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=104.1

Q ss_pred             CCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcc---
Q psy1036          75 KPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII---  151 (399)
Q Consensus        75 ~~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~g---  151 (399)
                      ....+...+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.+   
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~--------~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVA--------YLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHH--------HHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHH--------HHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence            34455667789999999999999999999        88899999887 4778999999999999999999999987   


Q ss_pred             CCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcC---CHHHHHHHHhCCCCCccc--------CCC
Q psy1036         152 GNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG---SVECVKRLIGCAKIQTSV--------RNK  220 (399)
Q Consensus       152 a~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g---~~~iv~~LL~~g~a~~~~--------~d~  220 (399)
                      ++                          ++..|. .|+||||+|+..|   +.+++++|+++| ++++.        +|.
T Consensus       226 ~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          226 GD--------------------------IEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKY  277 (373)
T ss_dssp             HT--------------------------TSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSC
T ss_pred             cC--------------------------hhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccccccccCcccc
Confidence            33                          566666 4777777777666   666777777776 66654        455


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         221 EGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       221 ~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      .|+||||+|+..|+.+++++|++..
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~  302 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEK  302 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhc
Confidence            6777777777777777777776554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=7.6e-26  Score=208.57  Aligned_cols=128  Identities=19%  Similarity=0.072  Sum_probs=108.0

Q ss_pred             CCccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCccc----------CCCCCCcHHHHHHHcCCHHHHHHHH
Q psy1036          82 LKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTIL----------HEGCRYNALHVSTKAVNPAMTEMLL  148 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~----------~d~~g~T~LH~Aa~~g~~~iv~~Ll  148 (399)
                      .+..|.||||+||..   |+.++|+        +|++.|++++..          .+..|+||||+|+..|+.+++++|+
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~--------~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  110 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIM--------PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV  110 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHH--------HHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHccccchHHHHH--------HHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHH
Confidence            467889999999999   9999999        666666443321          2457999999999999999999999


Q ss_pred             hccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCC------------CCchHHHHHHHcCCHHHHHHHHh---CCCC
Q psy1036         149 EIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA------------LNETPLHFAAKFGSVECVKRLIG---CAKI  213 (399)
Q Consensus       149 ~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~------------~G~TpLh~Aa~~g~~~iv~~LL~---~g~a  213 (399)
                      ++|++                          +|..|..            .|+||||+|+..|+.++|++|++   +| +
T Consensus       111 ~~ga~--------------------------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a  163 (256)
T 2etb_A          111 ENGAD--------------------------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-A  163 (256)
T ss_dssp             HTTCC--------------------------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-C
T ss_pred             HcCCC--------------------------CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-C
Confidence            99998                          4555441            29999999999999999999999   88 9


Q ss_pred             CcccCCCCCCcHHHHHHh--CCCHH-------HHHHHHhc
Q psy1036         214 QTSVRNKEGKTPLDVCFK--MPSVD-------SMGPLSTK  244 (399)
Q Consensus       214 ~~~~~d~~G~TpL~~A~~--~g~~~-------iv~~Ll~~  244 (399)
                      +++.+|..|+||||+|+.  .++.+       ++++|++.
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~  203 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM  203 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc
Confidence            999999999999999999  88888       66666653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=1.2e-24  Score=196.45  Aligned_cols=165  Identities=18%  Similarity=0.142  Sum_probs=136.2

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCC--CCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcc--CC--
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD--FPTILHEGCRYNALHVSTKAVNPAMTEMLLEII--GN--  153 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~--~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~g--a~--  153 (399)
                      ...+..|.||||+|+..|+.++|+        +|++.|+  +.+...+..|+||||+|+..|+.+++++|++.|  ++  
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  101 (228)
T 2dzn_A           30 LQKDQDGRIPLHWSVSFQAHEITS--------FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN  101 (228)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHH--------HHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc
Confidence            335678899999999999999999        8888884  433335678999999999999999999999998  44  


Q ss_pred             ----CCCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHH
Q psy1036         154 ----PAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV  228 (399)
Q Consensus       154 ----~~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~  228 (399)
                          .+.+++++++..+.... .+++..+++++.+|. .|+||||+|+..|+.+++++|++.|.++++.+|..|+||||+
T Consensus       102 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          102 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence                34567777765544332 566667889999998 699999999999999999999999988999999999999999


Q ss_pred             HHhCCCHHHHHHHH-hccCchhhccc
Q psy1036         229 CFKMPSVDSMGPLS-TKLTPTKVATK  253 (399)
Q Consensus       229 A~~~g~~~iv~~Ll-~~~~~~~~~~~  253 (399)
                      |+..|+.+++++|+ +.+........
T Consensus       181 A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             HHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            99999999999999 66654443333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=4.2e-25  Score=201.07  Aligned_cols=160  Identities=17%  Similarity=0.141  Sum_probs=123.8

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC---
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP---  154 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~---  154 (399)
                      .+...+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.|+++   
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  107 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAE--------ALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH  107 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHH--------CCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH
Confidence            34556778999999999999999999        99999999888 4778999999999999999999999998752   


Q ss_pred             ---------CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCc
Q psy1036         155 ---------AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKT  224 (399)
Q Consensus       155 ---------~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~T  224 (399)
                               +.+++++++..+.... .+++..++++|.++...|+||||+|+..|+.++|++|+++| ++++.+|..|+|
T Consensus       108 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t  186 (236)
T 1ikn_D          108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYS  186 (236)
T ss_dssp             CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCC
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCC
Confidence                     4455666554443222 45555667777776424777777777777777777777777 777777777777


Q ss_pred             HHHHHHhCCCHHHHHHHHhccCc
Q psy1036         225 PLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       225 pL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                      |||+|+.+|+.+++++|++.+..
T Consensus       187 pl~~A~~~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          187 PYQLTWGRPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             GGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHccCchHHHHHHHHcchh
Confidence            77777777777777777777653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=1.4e-24  Score=184.37  Aligned_cols=125  Identities=22%  Similarity=0.182  Sum_probs=103.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      ..|+||.|+..|+.++|+        +|++.|.+.+  .+..|+||||+|+..|+.+++++|++.|++            
T Consensus         2 ~~~~L~~A~~~g~~~~v~--------~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------   59 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVR--------ILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------   59 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHH--------HHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred             ccHHHHHHHHcCCHHHHH--------HHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            458999999999999999        7778887655  366799999999999999999999999887            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        60 --------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           60 --------------RDARTK-VDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             --------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --------------CCCCCC-CCCCHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                          667776 5788888888888888888888877 777778888888888888888888888887776


Q ss_pred             Cch
Q psy1036         246 TPT  248 (399)
Q Consensus       246 ~~~  248 (399)
                      ...
T Consensus       124 a~~  126 (153)
T 1awc_B          124 ADV  126 (153)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=9.9e-25  Score=187.89  Aligned_cols=124  Identities=18%  Similarity=0.201  Sum_probs=90.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCC
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  165 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~  165 (399)
                      |.||||.||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++            
T Consensus         3 ~~t~L~~A~~~g~~~~v~--------~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------   61 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLA--------TRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------   61 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHH--------HHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             CcchHHHHHHCCCHHHHH--------HHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------
Confidence            568999999999999999        77788877776 467899999999999999999999999987            


Q ss_pred             hhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         166 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       166 ~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                    ++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++..
T Consensus        62 --------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           62 --------------PQLLGK-GRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             --------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --------------CCCcCC-CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                          455554 4555555555555555555555555 555555555555555555555555555555554


Q ss_pred             C
Q psy1036         246 T  246 (399)
Q Consensus       246 ~  246 (399)
                      .
T Consensus       126 ~  126 (167)
T 3v31_A          126 A  126 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=2.6e-24  Score=195.02  Aligned_cols=201  Identities=17%  Similarity=0.122  Sum_probs=151.3

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +...+..|.||||+|+..|+.++|+        +|++.|.+++...+..|+||||+|+..|+.+++++|++.|++     
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-----  101 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVK--------YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-----  101 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC-----
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHH--------HHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC-----
Confidence            3445677889999999999999999        888888877765666799999999999999999999999887     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC-HHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS-VDS  237 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~-~~i  237 (399)
                                           ++..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .++
T Consensus       102 ---------------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A          102 ---------------------PSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             ---------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             ---------------------CcccCC-CCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHH
Confidence                                 788888 6999999999999999999999999 8999999999999999996665 889


Q ss_pred             HHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccc
Q psy1036         238 MGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT  317 (399)
Q Consensus       238 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~  317 (399)
                      +++|++............+ ...++. ....+..++++.+                 ...|.                  
T Consensus       159 ~~~L~~~~~~~~~~~~~~g-~t~L~~-A~~~~~~~~v~~L-----------------l~~g~------------------  201 (240)
T 3eu9_A          159 TRLLLTFNVSVNLGDKYHK-NTALHW-AVLAGNTTVISLL-----------------LEAGA------------------  201 (240)
T ss_dssp             HHHHHHTTCCTTCCCTTTC-CCHHHH-HHHHTCHHHHHHH-----------------HHHTC------------------
T ss_pred             HHHHHhcCCCcchhhccCC-CcHHHH-HHHcCCHHHHHHH-----------------HHcCC------------------
Confidence            9999988754443322111 122221 1111122222211                 11111                  


Q ss_pred             cCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCe
Q psy1036         318 AADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRY  372 (399)
Q Consensus       318 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~  372 (399)
                                          .....+..+.||||+|++.|+.++|+.|+..+++-
T Consensus       202 --------------------~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          202 --------------------NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             --------------------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             --------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence                                11223345679999999999999999999988764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=3.3e-26  Score=209.53  Aligned_cols=126  Identities=17%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      |...|.||||.|+..|+.+.++        .|+++|++++.  +..|.||||+|+..|+.+++++|++.|++        
T Consensus         1 p~~~g~t~L~~a~~~~~~~~~~--------~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------   62 (239)
T 1ycs_B            1 PEITGQVSLPPGKRTNLRKTGS--------ERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDD--------   62 (239)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS--------
T ss_pred             CCccccccCchhhhhhhHHHHH--------HHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            4567889999999999999999        88899988876  34689999999999999999999999987        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        +|.+|. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        63 ------------------~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~L  122 (239)
T 1ycs_B           63 ------------------PSLPND-EGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFL  122 (239)
T ss_dssp             ------------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                              789998 6999999999999999999999999 99999999999999999999999999999


Q ss_pred             Hhcc
Q psy1036         242 STKL  245 (399)
Q Consensus       242 l~~~  245 (399)
                      ++.+
T Consensus       123 l~~g  126 (239)
T 1ycs_B          123 VESG  126 (239)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            8753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=1.6e-24  Score=191.87  Aligned_cols=156  Identities=10%  Similarity=0.089  Sum_probs=124.2

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccC-C---
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N---  153 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga-~---  153 (399)
                      .....+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.+. +   
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  101 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAK--------ALIDRGADINL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK  101 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhccCccccc
Confidence            34445677899999999999999999        88899998887 46789999999999999999999995443 3   


Q ss_pred             ---CCCccccccCCChhHHH-HHHhhhc-cCCCCCCCCCCchHHHHHHHcCC-----HHHHHHHHhCCCCCcccCCCCCC
Q psy1036         154 ---PAFTNLLYDSDTPSYIE-RSDILLD-LYVNTPDKALNETPLHFAAKFGS-----VECVKRLIGCAKIQTSVRNKEGK  223 (399)
Q Consensus       154 ---~~~~~l~~a~~~~~~~~-~~~~~~~-~~vn~~d~~~G~TpLh~Aa~~g~-----~~iv~~LL~~g~a~~~~~d~~G~  223 (399)
                         .+.+++++++..+.... .+++..+ .++|.+|. .|+||||+|+..++     .+++++|+++| ++++.+|..|+
T Consensus       102 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~  179 (201)
T 3hra_A          102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGR  179 (201)
T ss_dssp             CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTSC
T ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCCC
Confidence               34556666665443322 4444555 77888887 68888888888887     88888888888 88888888888


Q ss_pred             cHHHHHHhCCCHHHHHHHHhc
Q psy1036         224 TPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       224 TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      ||||+|+.+|+.+++++|++.
T Consensus       180 t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          180 TAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHhHHHHHHhc
Confidence            888888888888888888865

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=3.6e-24  Score=194.59  Aligned_cols=167  Identities=17%  Similarity=0.225  Sum_probs=141.5

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-CC-----
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII-GN-----  153 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~g-a~-----  153 (399)
                      ...+..|.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.| .+     
T Consensus        38 ~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  108 (237)
T 3b7b_A           38 DTCSEDQRTPLMEAAENNHLEAVK--------YLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD  108 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHH--------HHHTTTCCCCC-CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC
T ss_pred             CccCCCCCCHHHHHHHhCCHHHHH--------HHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Confidence            444667889999999999999999        88899988877 4678999999999999999999999998 33     


Q ss_pred             -CCCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh
Q psy1036         154 -PAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK  231 (399)
Q Consensus       154 -~~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~  231 (399)
                       .+.+++++++..+.... .+++..+.+++.+|. .|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.
T Consensus       109 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~  186 (237)
T 3b7b_A          109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAAR  186 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence             35567777765544332 566667888999998 6999999999999999999999999 9999999999999999999


Q ss_pred             CCCHHHHHHHHhccCchhhcccCCCC
Q psy1036         232 MPSVDSMGPLSTKLTPTKVATKSEGT  257 (399)
Q Consensus       232 ~g~~~iv~~Ll~~~~~~~~~~~~~~~  257 (399)
                      .|+.+++++|++++.......+.+.+
T Consensus       187 ~~~~~~v~~Ll~~gad~~~~d~~g~t  212 (237)
T 3b7b_A          187 ENRYDCVVLFLSRDSDVTLKNKEGET  212 (237)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             hCCHhHHHHHHHcCCCCCccCCCCCC
Confidence            99999999999998665544444333

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=5.7e-25  Score=190.30  Aligned_cols=130  Identities=22%  Similarity=0.290  Sum_probs=120.8

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.|++      
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------   94 (172)
T 3v30_A           30 NKPDERGFTPLIWASAFGEIETVR--------FLLEWGADPHI-LAKERESALSLASTGGYTDIVGLLLERDVD------   94 (172)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHH--------HHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCchh-hcccCCCHHHHHHHCCCHHHHHHHHHcCCC------
Confidence            444678889999999999999999        88899988887 467899999999999999999999999887      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                                          +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.++++
T Consensus        95 --------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           95 --------------------INIYDW-NGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             --------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHH
Confidence                                788998 6999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHhccC
Q psy1036         240 PLSTKLT  246 (399)
Q Consensus       240 ~Ll~~~~  246 (399)
                      +|++.+.
T Consensus       153 ~L~~~~~  159 (172)
T 3v30_A          153 VIENHIL  159 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=2.3e-25  Score=207.42  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=105.5

Q ss_pred             CccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCc-------c---cCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy1036          83 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPT-------I---LHEGCRYNALHVSTKAVNPAMTEMLLE  149 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~-------~---~~d~~g~T~LH~Aa~~g~~~iv~~Ll~  149 (399)
                      +..|.||||+||..   |+.++|+        +|++.|+++.       .   ..+..|+||||+|+..|+.++|++|++
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~--------~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  122 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIA--------LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE  122 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHH--------HHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHH--------HHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            57889999999987   9999999        5555543211       0   135579999999999999999999999


Q ss_pred             ccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh---CCCCCcccCCCCCCcHH
Q psy1036         150 IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG---CAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       150 ~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~---~g~a~~~~~d~~G~TpL  226 (399)
                      +|++.+.......            ....+.+..+. .|+||||+|+..|+.++|++|++   +| ++++.+|..|+|||
T Consensus       123 ~ga~~~~~~~~~~------------~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpL  188 (273)
T 2pnn_A          123 NGADVQAAANGDF------------FKKTKGRPGFY-FGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVL  188 (273)
T ss_dssp             TTCCTTCCBCSGG------------GSSCSSSCCCC-SCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHH
T ss_pred             CCCCcCccccccc------------ccccccccccc-CCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHH
Confidence            9998332211000            00001222333 59999999999999999999999   88 99999999999999


Q ss_pred             HHHHhCCC---------HHHHHHHHhc
Q psy1036         227 DVCFKMPS---------VDSMGPLSTK  244 (399)
Q Consensus       227 ~~A~~~g~---------~~iv~~Ll~~  244 (399)
                      |+|+..|+         .+++++|++.
T Consensus       189 h~A~~~~~~~~~~~~~~~~~v~~Ll~~  215 (273)
T 2pnn_A          189 HALVEVADNTVDNTKFVTSMYNEILIL  215 (273)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCcchhHHHHHHHHHHHHHHh
Confidence            99999877         4555555543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=4.3e-24  Score=183.50  Aligned_cols=136  Identities=20%  Similarity=0.180  Sum_probs=117.2

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +.++.|+||.|+..|+.++|+        +|++.+.......+..|+||||+|+..|+.+++++|++.|++         
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~--------~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   67 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVK--------KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---------   67 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHH--------HHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             cchhhHHHHHHHHhCCHHHHH--------HHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---------
Confidence            567889999999999999999        666644322223566799999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus        68 -----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  128 (165)
T 3twr_A           68 -----------------VHAKDK-GGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLL  128 (165)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------CCccCC-CCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                             788898 6999999999999999999999999 899999999999999999999999999999


Q ss_pred             hccCchhhcccC
Q psy1036         243 TKLTPTKVATKS  254 (399)
Q Consensus       243 ~~~~~~~~~~~~  254 (399)
                      +...........
T Consensus       129 ~~ga~~~~~~~~  140 (165)
T 3twr_A          129 QHGADPTKKNRD  140 (165)
T ss_dssp             HTTCCTTCCCTT
T ss_pred             HcCCCCcccCCC
Confidence            987554444333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=9.2e-25  Score=198.01  Aligned_cols=146  Identities=18%  Similarity=0.074  Sum_probs=104.0

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCc----ccCCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT----ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN  153 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~----~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~  153 (399)
                      .....+..|.||||+||..|+.++|+        +|++.|+++.    ...+..|+||||+|+..|+.+++++|+++|++
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  100 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAM--------VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS  100 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHH--------HHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            34455778899999999999999999        5656664431    12456799999999999999999999999988


Q ss_pred             CCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCC
Q psy1036         154 PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP  233 (399)
Q Consensus       154 ~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g  233 (399)
                      .+.......             .....+..|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|
T Consensus       101 ~~~~~~~~~-------------~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~  165 (232)
T 2rfa_A          101 VSARATGSV-------------FHYRPHNLIY-YGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQP  165 (232)
T ss_dssp             TTCCCCSGG-------------GSCCTTCSCC-CCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCS
T ss_pred             CCcccCCcc-------------eeeccccccc-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC
Confidence            443211000             0011334454 4777777777777777777777777 777777777777777777777


Q ss_pred             CHHHH----HHHHhccC
Q psy1036         234 SVDSM----GPLSTKLT  246 (399)
Q Consensus       234 ~~~iv----~~Ll~~~~  246 (399)
                      +.+++    ++|++...
T Consensus       166 ~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          166 NKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHhcCC
Confidence            77766    66666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=203.51  Aligned_cols=140  Identities=19%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      ....+..|+||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..++.+++++|++.|++     
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v~--------~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----  144 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLIP--------LLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAK-----  144 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHH--------HHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCCCC-----
Confidence            3445566777777777777777777        66666666665 355677777777777777777777777665     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                           +|.+|. .|+||||+||..|+.++|++||++| ++++.+|..|+||||+|+..|+.+++
T Consensus       145 ---------------------~n~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v  201 (269)
T 4b93_B          145 ---------------------PNKKDL-SGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVV  201 (269)
T ss_dssp             ---------------------SCCCCT-TCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             ---------------------CCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHH
Confidence                                 899998 6999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHhccCchhhcccCC
Q psy1036         239 GPLSTKLTPTKVATKSE  255 (399)
Q Consensus       239 ~~Ll~~~~~~~~~~~~~  255 (399)
                      ++|++.+.......+.+
T Consensus       202 ~~Ll~~Gad~~~~d~~G  218 (269)
T 4b93_B          202 ELLLLHGASVQVLNKRQ  218 (269)
T ss_dssp             HHHHHTTCCSCCCCTTS
T ss_pred             HHHHHCCCCCCCcCCCC
Confidence            99999886544444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.3e-24  Score=175.81  Aligned_cols=124  Identities=26%  Similarity=0.375  Sum_probs=115.7

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      +|.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++           
T Consensus         1 ~g~t~L~~A~~~~~~~~v~--------~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVK--------LLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----------   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHH--------HHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             CCccHHHHHHHcCcHHHHH--------HHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----------
Confidence            3679999999999999999        88888887776 466899999999999999999999999887           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                                     ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        61 ---------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           61 ---------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             ---------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------CcccCC-CCCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence                           788888 6999999999999999999999999 99999999999999999999999999999987


Q ss_pred             c
Q psy1036         245 L  245 (399)
Q Consensus       245 ~  245 (399)
                      +
T Consensus       124 G  124 (126)
T 1n0r_A          124 G  124 (126)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=2.3e-24  Score=183.07  Aligned_cols=122  Identities=22%  Similarity=0.249  Sum_probs=114.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++         
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   92 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTE--------VLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGAD---------   92 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHH--------HHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHHcCCC---------
Confidence            556789999999999999999        88899988887 477899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                       +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        93 -----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           93 -----------------VNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -----------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence                             788998 6999999999999999999999999 99999999999999999999999999887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1.5e-24  Score=186.42  Aligned_cols=130  Identities=23%  Similarity=0.260  Sum_probs=118.3

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .....+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++    
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----  100 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVE--------YLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAV----  100 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CccccccCCCCHHHHHHHcChHHHHH--------HHHhcCCCCCc-cCCCCCCHHHHHHHcCcHHHHHHHHhCCCC----
Confidence            34445667889999999999999999        88899988887 477899999999999999999999999987    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHH
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDS  237 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~i  237 (399)
                                            +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+. ++.++
T Consensus       101 ----------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i  155 (165)
T 3twr_A          101 ----------------------VNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDI  155 (165)
T ss_dssp             ----------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred             ----------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHH
Confidence                                  788998 6999999999999999999999999 9999999999999999877 99999


Q ss_pred             HHHHHhcc
Q psy1036         238 MGPLSTKL  245 (399)
Q Consensus       238 v~~Ll~~~  245 (399)
                      +++|++++
T Consensus       156 ~~~L~~~g  163 (165)
T 3twr_A          156 QDLLRGDA  163 (165)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHhhcc
Confidence            99999764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=5.2e-25  Score=187.92  Aligned_cols=128  Identities=22%  Similarity=0.244  Sum_probs=116.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      ...+.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+ .|+.+++++|++.|++         
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---------   69 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVR--------ALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAE---------   69 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHH--------HHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---------
T ss_pred             CccchHHHHHHHHcCCHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---------
Confidence            566789999999999999999        88899988887 4678999999986 9999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCch-HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNET-PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~T-pLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                       +|.+|. .|+| |||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        70 -----------------~~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~L  130 (156)
T 1bi7_B           70 -----------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYL  130 (156)
T ss_dssp             -----------------CCCCCT-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             -----------------CCCcCC-CCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHH
Confidence                             889998 6999 999999999999999999999 99999999999999999999999999999


Q ss_pred             HhccCch
Q psy1036         242 STKLTPT  248 (399)
Q Consensus       242 l~~~~~~  248 (399)
                      ++.+...
T Consensus       131 l~~ga~~  137 (156)
T 1bi7_B          131 RAAAGGT  137 (156)
T ss_dssp             SSCC---
T ss_pred             HHcCCCC
Confidence            9987543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=6.7e-24  Score=185.03  Aligned_cols=137  Identities=19%  Similarity=0.249  Sum_probs=117.6

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCC-CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g-~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      .+++++||.||..|+.++|+        +|++.+ .+++. .+..|+||||+||..|+.+++++|++.|++         
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~--------~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   64 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVR--------LWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRGAR---------   64 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHH--------HHHHCTTSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHH--------HHHhcCcccccc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------
Confidence            35667999999999999999        666664 44555 577899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|..|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus        65 -----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  125 (179)
T 3f6q_A           65 -----------------INVMNR-GDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLV  125 (179)
T ss_dssp             -----------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                             788888 6999999999999999999999999 999999999999999999999999999999


Q ss_pred             hccCchhhcccCCCC
Q psy1036         243 TKLTPTKVATKSEGT  257 (399)
Q Consensus       243 ~~~~~~~~~~~~~~~  257 (399)
                      +.+.........+.+
T Consensus       126 ~~ga~~~~~~~~g~t  140 (179)
T 3f6q_A          126 ANGALVSICNKYGEM  140 (179)
T ss_dssp             HTTCCSSBCCTTSCC
T ss_pred             HCCCCcchhccCCCC
Confidence            988655444444333

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=3.8e-24  Score=184.19  Aligned_cols=130  Identities=22%  Similarity=0.307  Sum_probs=120.7

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +...+..|.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++     
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----   94 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVE--------FLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDCGVD-----   94 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-----
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHH--------HHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----
Confidence            4445678899999999999999999        88899988887 467899999999999999999999999987     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                           +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++
T Consensus        95 ---------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           95 ---------------------VNEYDW-NGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             ---------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ---------------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence                                 788998 6999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHhcc
Q psy1036         239 GPLSTKL  245 (399)
Q Consensus       239 ~~Ll~~~  245 (399)
                      ++|++++
T Consensus       152 ~~L~~~~  158 (167)
T 3v31_A          152 QVIESHL  158 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=2.7e-24  Score=183.87  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=117.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+..|.||||+|+. |+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++      
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------   95 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIAR--------RLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQAD------   95 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred             cccCccCccHHHHHHc-CcHHHHH--------HHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            3346678899999999 9999999        88899988887 477899999999999999999999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC-cccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ-TSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~-~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                          +|.+|. .|+||||+|+..|+.+++++|+++| ++ ++.+|..|+||||+|+.+|+.+++
T Consensus        96 --------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           96 --------------------VNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             --------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence                                789998 6999999999999999999999999 66 699999999999999999999999


Q ss_pred             HHHHhccC
Q psy1036         239 GPLSTKLT  246 (399)
Q Consensus       239 ~~Ll~~~~  246 (399)
                      ++|++++.
T Consensus       154 ~~Ll~~GA  161 (162)
T 1ihb_A          154 SLMQANGA  161 (162)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHhCC
Confidence            99998763

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=5.2e-24  Score=187.74  Aligned_cols=123  Identities=19%  Similarity=0.067  Sum_probs=104.7

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC----
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP----  154 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~----  154 (399)
                      ....+..|.||||+|+..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++.    
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  131 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRLGIAE--------KLLSKGSNVNT-KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN  131 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             cccccccCccHHHHHHHcCCHHHHH--------HHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            3445677899999999999999999        88888988877 4778999999999999999999999999873    


Q ss_pred             --CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCC
Q psy1036         155 --AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  211 (399)
Q Consensus       155 --~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g  211 (399)
                        +.+++++++..+.... .+++..+++++.+|. .|+||||+|+..|+.+++++|++++
T Consensus       132 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          132 LEGETPLIVASKYGRSEIVKKLLELGADISARDL-TGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence              4567777765443332 566677899999998 6999999999999999999999876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=6.4e-24  Score=180.56  Aligned_cols=145  Identities=21%  Similarity=0.211  Sum_probs=68.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhC-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------CCccc
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------AFTNL  159 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~-g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------~~~~l  159 (399)
                      .|+||+||..|+.++|+        +|++. +.+++. .+..|+||||+ |..|+.+++++|++.|++.      +.+++
T Consensus         3 ~~~L~~A~~~g~~~~v~--------~ll~~~~~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   72 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVR--------RLLHRELVHPDA-LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHHTCHHHHH--------HHHHTTCCCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             chHHHHHHHhCCHHHHH--------HHHHhhCcCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            35556666666666555        33333 123333 24445555555 5555555555555555541      01111


Q ss_pred             cccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         160 LYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       160 ~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                      ++++..+.... .+++..++++|.+|. .|+||||+|+..|+.+++++|++.  ++++.+|..|+||||+|+..|+.+++
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            11111110000 111111122555555 455566665555555555555555  45555555555566555555555555


Q ss_pred             HHHHhc
Q psy1036         239 GPLSTK  244 (399)
Q Consensus       239 ~~Ll~~  244 (399)
                      ++|+++
T Consensus       150 ~~Ll~~  155 (156)
T 1bd8_A          150 DILQGH  155 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            555543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=2.5e-24  Score=201.43  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCC-CCcccCCCCCCcHHHHHH-----HcCCHHHHHHHHhccCC
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD-FPTILHEGCRYNALHVST-----KAVNPAMTEMLLEIIGN  153 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~-~~~~~~d~~g~T~LH~Aa-----~~g~~~iv~~Ll~~ga~  153 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|+ +++. .+..|+||||+|+     ..++.+++++|++.|..
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~--------~Ll~~g~~~~~~-~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~  175 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQ--------QLLDSGVCKVDK-QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI  175 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTSCCCTTC-CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHH--------HHHHCCCCcCCC-CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC
Confidence            345677888999999999999998        7778886 6555 4667888888888     56788888888888865


Q ss_pred             ------CCCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCCcH
Q psy1036         154 ------PAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTP  225 (399)
Q Consensus       154 ------~~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~-~g~a~~~~~d~~G~Tp  225 (399)
                            .+.+++++++..+.... .+++..++++|.+|. .|+||||+|+..|+.++|++|++ .| ++++.+|..|+||
T Consensus       176 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~Tp  253 (276)
T 4hbd_A          176 NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDGSTA  253 (276)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTCCCTTSCCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcCcCCCCCCH
Confidence                  24566676665443322 555566777777777 58888888888888888888887 66 7888888888888


Q ss_pred             HHHHHhCCCHHHHHHHHhcc
Q psy1036         226 LDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       226 L~~A~~~g~~~iv~~Ll~~~  245 (399)
                      ||+|+.+|+.+++++|+++.
T Consensus       254 L~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          254 LMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHhcc
Confidence            88888888888888887764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=2.9e-23  Score=186.79  Aligned_cols=157  Identities=14%  Similarity=0.083  Sum_probs=101.7

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC--
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD-FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP--  154 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~-~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~--  154 (399)
                      .....+..|.||||+|+..|+.++|+        +|++.+. +++. .+..|+||||+|+..|+.+++++|++.|++.  
T Consensus        50 ~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  120 (223)
T 2f8y_A           50 DANIQDNMGRTPLHAAVSADAQGVFQ--------ILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADVNA  120 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHBTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC
Confidence            34455778899999999999999999        7778775 4444 5678999999999999999999999999872  


Q ss_pred             ----CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHH
Q psy1036         155 ----AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC  229 (399)
Q Consensus       155 ----~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A  229 (399)
                          +.+++++++..+.... .+++..++++|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+|||++|
T Consensus       121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A  198 (223)
T 2f8y_A          121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIA  198 (223)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHH
Confidence                2334444433222211 333334455555554 3555555555555555555555555 55555555555555555


Q ss_pred             HhCCCHHHHHHHHhcc
Q psy1036         230 FKMPSVDSMGPLSTKL  245 (399)
Q Consensus       230 ~~~g~~~iv~~Ll~~~  245 (399)
                      +.+++.+++++|++..
T Consensus       199 ~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          199 QERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HHTTCHHHHHHHHHTT
T ss_pred             HHhcchHHHHHHHHcC
Confidence            5555555555555543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=1.2e-24  Score=204.59  Aligned_cols=124  Identities=16%  Similarity=0.051  Sum_probs=112.0

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      +|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|+++|++           
T Consensus        61 ~g~t~L~~A~~~g~~~~v~--------~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------  120 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVK--------ILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWR-----------  120 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-----------
T ss_pred             CCCCHHHHHHHcCCHHHHH--------HHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-----------
Confidence            5899999999999999999        88899999888 577899999999999999999999999887           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCC-chHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCcHHHHHHhCCCHHHHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK-EGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G-~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                     ++.+|. .| .||||+|+..|+.+++++|+++| ++.  .+. .|+||||+|+..|+.+++++|+
T Consensus       121 ---------------~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          121 ---------------LMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEI-PST--FDLAILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             ---------------GGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTS-CTT--CCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------CCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCC-Ccc--ccccCCccHHHHHHHcChHHHHHHHH
Confidence                           788888 58 79999999999999999999999 555  333 8999999999999999999999


Q ss_pred             hccCc
Q psy1036         243 TKLTP  247 (399)
Q Consensus       243 ~~~~~  247 (399)
                      +.+..
T Consensus       182 ~~gad  186 (285)
T 3kea_A          182 DYMTS  186 (285)
T ss_dssp             HHHHH
T ss_pred             HcCCC
Confidence            87643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=202.05  Aligned_cols=121  Identities=20%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccC-CCCCccccccCCCh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-NPAFTNLLYDSDTP  166 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga-~~~~~~l~~a~~~~  166 (399)
                      +++|.|+..|+++.++.++.....+++      +. .|..|+||||+||..|+.+++++|++.|+ +             
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~------n~-~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~-------------  137 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVV------NI-ADSNGNTALHYSVSHANFPVVQQLLDSGVCK-------------  137 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHH------TC-CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC-------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcC------cC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-------------
Confidence            467888999999999966544333332      22 36689999999999999999999999998 4             


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHH-----HcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAA-----KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa-----~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                   +|..|. .|+||||+|+     ..++.+++++|++.| ++.+..|..|+||||+|+..|+.+++++|
T Consensus       138 -------------~~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  202 (276)
T 4hbd_A          138 -------------VDKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKAL  202 (276)
T ss_dssp             -------------TTCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------CCCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                         444444 3555555555     334555555555555 44455555555555555555555555555


Q ss_pred             Hh
Q psy1036         242 ST  243 (399)
Q Consensus       242 l~  243 (399)
                      ++
T Consensus       203 l~  204 (276)
T 4hbd_A          203 LA  204 (276)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=3.3e-24  Score=175.37  Aligned_cols=112  Identities=25%  Similarity=0.295  Sum_probs=101.9

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      ...+.|+||+|+..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|++.|++         
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~--------~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   65 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVK--------DYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGAD---------   65 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHH--------HHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---------
T ss_pred             ccccchHHHHHHHcCCHHHHH--------HHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            356779999999999999999        78888888877 477899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK  231 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~  231 (399)
                                       +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.
T Consensus        66 -----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           66 -----------------INAPDK-HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred             -----------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence                             789998 6999999999999999999999999 9999999999999999944

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=4.3e-24  Score=186.24  Aligned_cols=135  Identities=17%  Similarity=0.197  Sum_probs=123.7

Q ss_pred             CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC
Q psy1036          76 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        76 ~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~  155 (399)
                      .......+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++  
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--   97 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVE--------MLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKAD--   97 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--
Confidence            3344555778899999999999999999        88899988887 477899999999999999999999999987  


Q ss_pred             CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                                              +|.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+|||++|+..++.
T Consensus        98 ------------------------~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           98 ------------------------INAVNE-HGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             ------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHH
T ss_pred             ------------------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHH
Confidence                                    789998 6999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHhccCc
Q psy1036         236 DSMGPLSTKLTP  247 (399)
Q Consensus       236 ~iv~~Ll~~~~~  247 (399)
                      +++++|++....
T Consensus       152 ~~~~~L~~~g~~  163 (179)
T 3f6q_A          152 LLRERAEKMGQN  163 (179)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHhhcC
Confidence            999999998743

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=2.3e-23  Score=177.10  Aligned_cols=114  Identities=17%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcc-CC------CCCccccccCCChhHH-HHHHhhhccCCCCCCCCCCchHHHHHHHcC
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEII-GN------PAFTNLLYDSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFG  199 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~g-a~------~~~~~l~~a~~~~~~~-~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g  199 (399)
                      |.|+||+|+..|+.+++++|++.. .+      .+.+++++ +..+... ..+++..++++|.+|. .|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcC
Confidence            468999999999999999999883 12      45678888 5444332 2666677899999998 6999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         200 SVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       200 ~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      +.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        80 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           80 FLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             CHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            999999999999 99999999999999999999999999999988

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=9e-25  Score=182.08  Aligned_cols=125  Identities=26%  Similarity=0.302  Sum_probs=113.1

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          82 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      .+..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++        
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------   68 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVE--------YLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHKAL--------   68 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHH--------HHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCc--------
Confidence            3678899999999999999999        88899988887 477899999999999999999999999887        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                        ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..+..+++++|
T Consensus        69 ------------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           69 ------------------VNTTGY-QNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             ------------------TTCCCG-GGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             ------------------ccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence                              788998 6999999999999999999999999 99999999999999999988777777655


Q ss_pred             Hh
Q psy1036         242 ST  243 (399)
Q Consensus       242 l~  243 (399)
                      .+
T Consensus       129 ~~  130 (137)
T 3c5r_A          129 EK  130 (137)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=5.5e-24  Score=196.40  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=119.7

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCC-------------CCCCcHHHHHHHcCCHHHH
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHE-------------GCRYNALHVSTKAVNPAMT  144 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d-------------~~g~T~LH~Aa~~g~~~iv  144 (399)
                      ++...+..|.||||+||..|+.++|+        +|++.|++++....             ..|+||||+|+..|+.+++
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~--------~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVE--------LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHH--------HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHH--------HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence            44555668999999999999999999        88899988887432             5799999999999999999


Q ss_pred             HHHHh---ccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCC---------HHHHHHHHhCCC
Q psy1036         145 EMLLE---IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS---------VECVKRLIGCAK  212 (399)
Q Consensus       145 ~~Ll~---~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~---------~~iv~~LL~~g~  212 (399)
                      ++|++   .|++                          +|.+|. .|+||||+|+..|+         .+++++|+++| 
T Consensus       157 ~~Ll~~~~~ga~--------------------------~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-  208 (260)
T 3jxi_A          157 HYLTENGHKQAD--------------------------LRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-  208 (260)
T ss_dssp             HHHHHCSSCCCC--------------------------TTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhccccCCC--------------------------CcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-
Confidence            99999   7776                          899998 69999999999888         79999999999 


Q ss_pred             CCc-------ccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         213 IQT-------SVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       213 a~~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      +++       +.+|..|+||||+|+..|+.+++++|++++
T Consensus       209 a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            888       789999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=190.55  Aligned_cols=130  Identities=23%  Similarity=0.267  Sum_probs=119.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ......+.|+||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|++.|++      
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------   79 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQ--------QAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGAN------   79 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHH--------HHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             cccccchhHHHHHHHHcCCHHHHH--------HHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence            345678899999999999999999        88888988887 577899999999999999999999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCcHHHHH--HhCCCHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDVC--FKMPSVD  236 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d-~~G~TpL~~A--~~~g~~~  236 (399)
                                          +|.+|. .|+||||+|+..|+.++|++|+++| ++++.++ ..|+||||+|  +..|+.+
T Consensus        80 --------------------~n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~  137 (229)
T 2vge_A           80 --------------------VNSPDS-HGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYAD  137 (229)
T ss_dssp             --------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHH
T ss_pred             --------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHH
Confidence                                889998 6999999999999999999999999 9999987 6999999999  9999999


Q ss_pred             HHHHHHhccC
Q psy1036         237 SMGPLSTKLT  246 (399)
Q Consensus       237 iv~~Ll~~~~  246 (399)
                      ++++|++.+.
T Consensus       138 ~v~~Ll~~ga  147 (229)
T 2vge_A          138 CATYLADVEQ  147 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHcCC
Confidence            9999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=7.7e-24  Score=186.67  Aligned_cols=125  Identities=10%  Similarity=0.066  Sum_probs=111.3

Q ss_pred             ccchHHHHHHHHcCCH----HHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC------HHHHHHHHhccCC
Q psy1036          84 SQELVKLRKLIEKGNL----ADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN------PAMTEMLLEIIGN  153 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~----~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~------~~iv~~Ll~~ga~  153 (399)
                      ..|+||||+|+..|+.    ++|+        +|++.|++++. ++..|+||||+|+..|+      .+++++|+++|++
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~--------~Ll~~Gadvn~-~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad  106 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISM--------FLINKGADIKS-RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD  106 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHH--------HHHHTTCCSSC-CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHH--------HHHHCCCCCCC-CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC
Confidence            5588999999999985    4788        88899999988 46789999999999887      6789999999987


Q ss_pred             CCCccccccCCChhHHHHHHhhhccCCCCCCCCCCc-hHHHHHHHcC-----CHHHHHHHHh-CCCCCcccCCCCCCcHH
Q psy1036         154 PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE-TPLHFAAKFG-----SVECVKRLIG-CAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       154 ~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~-TpLh~Aa~~g-----~~~iv~~LL~-~g~a~~~~~d~~G~TpL  226 (399)
                                                +|.+|. .|+ ||||+|+..+     +.+++++|++ +| ++++.+|..|+|||
T Consensus       107 --------------------------in~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL  158 (186)
T 3t8k_A          107 --------------------------ITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTAL  158 (186)
T ss_dssp             --------------------------SSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHH
T ss_pred             --------------------------CCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHH
Confidence                                      899998 699 9999999954     4679999999 89 99999999999999


Q ss_pred             HHHHhCCCHHHHHHHHhcc
Q psy1036         227 DVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       227 ~~A~~~g~~~iv~~Ll~~~  245 (399)
                      |+|++.|+.+++++|++..
T Consensus       159 ~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            9999999999999998764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=4.5e-23  Score=180.72  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||+||..|+.++|+        +|++ |.+++. .+..|+||||+|+..|+.+++++|++.|++         
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~--------~Ll~-~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------  101 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALS--------QLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGAD---------  101 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH--------HHTT-TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHh-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            457899999999999999999        7777 877777 577899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPD-KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d-~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                                       +|.+| . .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.
T Consensus       102 -----------------~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          102 -----------------LDHRDMR-GGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             -----------------TTCCCSS-SSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             -----------------CCcCCCC-CCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccC
Confidence                             78888 6 6999999999999999999999999 99999999999999999875433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.2e-23  Score=189.93  Aligned_cols=127  Identities=21%  Similarity=0.163  Sum_probs=111.3

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCCCcccccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLLYD  162 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~-ga~~~~~~l~~a  162 (399)
                      ..|.||||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.++|++|++. |++         
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---------  132 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLR--------ECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIE---------  132 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---------
T ss_pred             cccccccccccccCcHHHHH--------HHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---------
Confidence            35678999999999999999        88888988887 477899999999999999999999998 776         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.++++.|+
T Consensus       133 -----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          133 -----------------LNQQNK-LGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             -----------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred             -----------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHh
Confidence                             889998 6999999999999999999999999 999999999999999999999999999998


Q ss_pred             hccCc
Q psy1036         243 TKLTP  247 (399)
Q Consensus       243 ~~~~~  247 (399)
                      .....
T Consensus       194 ~~~~~  198 (222)
T 3ehr_A          194 GTDAV  198 (222)
T ss_dssp             -----
T ss_pred             ccchh
Confidence            77643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=5.4e-23  Score=188.06  Aligned_cols=127  Identities=22%  Similarity=0.194  Sum_probs=116.2

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..+.||||.||..|+.++|+        +|++.|++++. .+..|+||||+||..|+.+++++|+++|++         
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~--------~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------   95 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQ--------RIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFGVN---------   95 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHH--------HHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred             CchhhHHHHHHHHcCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            356789999999999999999        88899988887 477899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCC-cHHHHH--HhCCCHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK-TPLDVC--FKMPSVDSMG  239 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~-TpL~~A--~~~g~~~iv~  239 (399)
                                       +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|..|. ||||+|  +..|+.++++
T Consensus        96 -----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           96 -----------------VNAADS-DGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             -----------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             -----------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence                             899998 6999999999999999999999999 99999998887 999999  8889999999


Q ss_pred             HHHhccC
Q psy1036         240 PLSTKLT  246 (399)
Q Consensus       240 ~Ll~~~~  246 (399)
                      +|++...
T Consensus       157 ~Ll~~~a  163 (239)
T 1ycs_B          157 FLYGVQE  163 (239)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9998763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=1.9e-22  Score=174.15  Aligned_cols=146  Identities=18%  Similarity=0.129  Sum_probs=126.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHH
Q psy1036         126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK  205 (399)
Q Consensus       126 ~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~  205 (399)
                      ..+.++||+||..|+.+++++|++.|++                          +|.+|. .|+||||+|+..|+.++++
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v~   64 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD--------------------------VNAEDA-SGWTPLHLAAFNGHLEIVE   64 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHH
Confidence            3567899999999999999999999987                          788888 6999999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccc
Q psy1036         206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSF  285 (399)
Q Consensus       206 ~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~  285 (399)
                      +|+++| ++++.+|..|+||||+|+..|+.+++++|++......                                    
T Consensus        65 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------------------  107 (169)
T 2y1l_E           65 VLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN------------------------------------  107 (169)
T ss_dssp             HHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------------------------
T ss_pred             HHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------------------------
Confidence            999999 9999999999999999999999999999987531100                                    


Q ss_pred             cChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHH
Q psy1036         286 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKL  365 (399)
Q Consensus       286 ~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~l  365 (399)
                                                                             ..+..+.|+||.|++.|+.++|+.|
T Consensus       108 -------------------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~L  132 (169)
T 2y1l_E          108 -------------------------------------------------------ANDMEGHTPLHLAAMFGHLEIVEVL  132 (169)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------------------------------------------------CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                                                   0012345789999999999999999


Q ss_pred             hhcCCCeeecCCCchhHHHHhhccc
Q psy1036         366 VWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       366 v~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      +..++++++.+.+|.|+||.|++..
T Consensus       133 l~~g~~~~~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E          133 LKNGADVNAQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhC
Confidence            9999999998889999999998754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1e-22  Score=187.02  Aligned_cols=111  Identities=18%  Similarity=0.151  Sum_probs=102.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||+||..|+.++|+        +|++ |.+++. .+..|+||||+||..|+.++|++|+++|++         
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~--------~Ll~-~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------  102 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALS--------QLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGAD---------  102 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHH--------HTTT-TCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             ccCCCCHHHHHHHcCCHHHHH--------HHHc-CCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            357899999999999999999        7778 888887 477899999999999999999999999988         


Q ss_pred             CCChhHHHHHHhhhccCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHh
Q psy1036         163 SDTPSYIERSDILLDLYVNTPD-KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFK  231 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d-~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~  231 (399)
                                       +|.+| . .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus       103 -----------------~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          103 -----------------LDHRDMR-GGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELARE  153 (244)
T ss_dssp             -----------------TTCCCSS-SCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             -----------------CCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHH
Confidence                             78888 5 6999999999999999999999999 9999999999999999984

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=2e-22  Score=167.75  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHH
Q psy1036         118 DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAK  197 (399)
Q Consensus       118 ~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~  197 (399)
                      .+++. .+..|+||||+|+..|+.+++++|++.|++                          +|.+|. .|+||||+|+.
T Consensus         3 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~~   54 (136)
T 1d9s_A            3 PGIHM-LGGSSDAGLATAAARGQVETVRQLLEAGAD--------------------------PNALNR-FGRRPIQVMMM   54 (136)
T ss_dssp             CCCSC-CCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTCCCT-TCCTTTTTSTT
T ss_pred             CCccC-CCCCCccHHHHHHHcCCHHHHHHHHHcCCC--------------------------cCCcCC-CCCCHHHHHHc
Confidence            34444 466899999999999999999999999887                          788998 69999999999


Q ss_pred             cCCHHHHHHHHhCCCCCcccCCCC-CCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         198 FGSVECVKRLIGCAKIQTSVRNKE-GKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       198 ~g~~~iv~~LL~~g~a~~~~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                       |+.+++++|+++| ++++.+|.. |+||||+|+..|+.+++++|++.
T Consensus        55 -~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  100 (136)
T 1d9s_A           55 -GSAQVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHRA  100 (136)
T ss_dssp             -SCHHHHHHHHHHT-CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHCC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             9999999999999 999999999 99999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=6.4e-22  Score=187.57  Aligned_cols=131  Identities=20%  Similarity=0.241  Sum_probs=117.0

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhc
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-----HEGCRYNALHVSTKA---VNPAMTEMLLEI  150 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~-----~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~  150 (399)
                      |..+...+.++||.|+..|+++.|+        .|+..|.+++..     .+..|+||||+|+..   |+.+++++|++.
T Consensus       144 f~~~~~~~~~~L~~A~~~g~~~~v~--------~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~  215 (301)
T 2b0o_E          144 FARRCTPEPQRLWTAICNRDLLSVL--------EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN  215 (301)
T ss_dssp             TSCCCC-CHHHHHHHHHTTCHHHHH--------HHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred             hhcccCchHHHHhhhhhccCHHHHH--------HHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence            3444455668999999999999999        677788777652     466899999999997   899999999999


Q ss_pred             cCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH
Q psy1036         151 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       151 ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~  230 (399)
                      |++                          +|.+|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+
T Consensus       216 gad--------------------------vn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~  267 (301)
T 2b0o_E          216 GGH--------------------------LDAKAA-DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR  267 (301)
T ss_dssp             SSC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHH
T ss_pred             CCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            987                          899998 6999999999999999999999999 999999999999999999


Q ss_pred             hCCCHHHHHHHHhcc
Q psy1036         231 KMPSVDSMGPLSTKL  245 (399)
Q Consensus       231 ~~g~~~iv~~Ll~~~  245 (399)
                      ..|+.+++++|++..
T Consensus       268 ~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          268 KKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhc
Confidence            999999999999865

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=2.3e-22  Score=171.42  Aligned_cols=142  Identities=14%  Similarity=0.032  Sum_probs=109.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  204 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv  204 (399)
                      +..|.||||+|+..|+.+++++|+++|++                          +|.+|. .|+||||+|+ .|+.+++
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~-~~~~~~v   60 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN--------------------------PNAPNS-YGRRPIQVMM-MGSARVA   60 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC--------------------------TTCCCS-SSCCTTTSSC-TTCHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCCCCC-CCCCHHHHHH-cCCHHHH
Confidence            45689999999999999999999999887                          788998 6999999986 9999999


Q ss_pred             HHHHhCCCCCcccCCCCCCc-HHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccc
Q psy1036         205 KRLIGCAKIQTSVRNKEGKT-PLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFK  283 (399)
Q Consensus       205 ~~LL~~g~a~~~~~d~~G~T-pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~  283 (399)
                      ++|+++| ++++.+|..|+| |||+|+..|+.+++++|++.....                                   
T Consensus        61 ~~Ll~~g-~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-----------------------------------  104 (156)
T 1bi7_B           61 ELLLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-----------------------------------  104 (156)
T ss_dssp             HHHHTTT-CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-----------------------------------
T ss_pred             HHHHHcC-CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-----------------------------------
Confidence            9999999 999999999999 999999999999999998753100                                   


Q ss_pred             cccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHH
Q psy1036         284 SFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVR  363 (399)
Q Consensus       284 ~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~  363 (399)
                                                                              ...+..+.||||+|++.|+.++|+
T Consensus       105 --------------------------------------------------------~~~d~~g~tpl~~A~~~~~~~~v~  128 (156)
T 1bi7_B          105 --------------------------------------------------------DVRDAWGRLPVDLAEELGHRDVAR  128 (156)
T ss_dssp             --------------------------------------------------------SCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             --------------------------------------------------------cccCCCCCCHHHHHHHhCHHHHHH
Confidence                                                                    001123468899999999999999


Q ss_pred             HHhhcCCCeeecCCCchhHHHHh
Q psy1036         364 KLVWDNPRYLVSSGDFPTILHVV  386 (399)
Q Consensus       364 ~lv~~~~~~~~~s~d~~~~l~~~  386 (399)
                      .|+..|++++..+..+.|..+-+
T Consensus       129 ~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          129 YLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHSSCC-----------------
T ss_pred             HHHHcCCCCCccCcCcCcccccC
Confidence            99999999999988888877643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=2.2e-22  Score=192.85  Aligned_cols=159  Identities=19%  Similarity=0.146  Sum_probs=101.1

Q ss_pred             CCCCC-CCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHhcc-
Q psy1036          77 SPFKS-LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN---PAMTEMLLEII-  151 (399)
Q Consensus        77 ~~~~~-~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~---~~iv~~Ll~~g-  151 (399)
                      ..+.. .+..|+||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+   .++++.|++.+ 
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~--------~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVK--------HLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            34444 5788999999999999999999        88899999987 57789999999999998   67777777766 


Q ss_pred             CC------CCCccccccCC----Ch--hHHH-HHHhhh------------------ccCCCCCCCCCCchHHHHHHHcCC
Q psy1036         152 GN------PAFTNLLYDSD----TP--SYIE-RSDILL------------------DLYVNTPDKALNETPLHFAAKFGS  200 (399)
Q Consensus       152 a~------~~~~~l~~a~~----~~--~~~~-~~~~~~------------------~~~vn~~d~~~G~TpLh~Aa~~g~  200 (399)
                      ++      .+.+++|+++.    .+  .... ++....                  ++++|.+|. .|+||||+|+.   
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~-~g~t~L~~a~~---  267 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG-ERKDSILENLD---  267 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc-cCCChhHHHHH---
Confidence            32      34445554432    11  1111 111110                  334444444 34444444442   


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccC
Q psy1036         201 VECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKS  254 (399)
Q Consensus       201 ~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  254 (399)
                         +++|+++   +++.+|..|+||||+|+.+|+.+++++|++.+.......+.
T Consensus       268 ---~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  315 (327)
T 1sw6_A          268 ---LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS  315 (327)
T ss_dssp             ---HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ---HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence               4444443   46788888888888888888888888888887554444333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.4e-21  Score=183.02  Aligned_cols=127  Identities=20%  Similarity=0.301  Sum_probs=113.3

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhccCCCC
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-----HEGCRYNALHVSTKA---VNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~-----~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~ga~~~  155 (399)
                      ....++|+.|+..|+.+.++        .++..|.+.+..     .+..|+||||+||..   |+.+++++|+++|++  
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~--------~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~--  197 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLL--------QAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN--  197 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH--------HHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC--
T ss_pred             chhhhhhhhHhhhcccHHHH--------HHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC--
Confidence            44567999999999999999        555666553321     256799999999999   899999999999998  


Q ss_pred             CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                                              +|.+|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+..|+.
T Consensus       198 ------------------------in~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~  251 (278)
T 1dcq_A          198 ------------------------LDKQTG-KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHE  251 (278)
T ss_dssp             ------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ------------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCH
Confidence                                    899998 6999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHhccC
Q psy1036         236 DSMGPLSTKLT  246 (399)
Q Consensus       236 ~iv~~Ll~~~~  246 (399)
                      +++++|++.+.
T Consensus       252 ~~v~~Ll~~ga  262 (278)
T 1dcq_A          252 HCEELLTQALS  262 (278)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHcCC
Confidence            99999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.2e-21  Score=150.55  Aligned_cols=91  Identities=29%  Similarity=0.427  Sum_probs=86.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      +|+||||+||..|+.+++++|++.|++                          +|.+|. .|+||||+|+..|+.+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------~n~~d~-~g~t~L~~A~~~~~~~~v~~   53 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------VNAKDK-NGRTPLHLAARNGHLEVVKL   53 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--------------------------CcccCC-CCCCHHHHHHHcCCHHHHHH
Confidence            379999999999999999999999987                          889998 69999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      |+++| ++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        54 Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           54 LLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999 999999999999999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=4.3e-21  Score=186.55  Aligned_cols=125  Identities=20%  Similarity=0.206  Sum_probs=115.9

Q ss_pred             cchHHHHHHHHc-CCHHHHHHHHhhCChhhhhCCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          85 QELVKLRKLIEK-GNLADVRKLVWDNPRYLVSSGDFPTILH-EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        85 ~~~T~Lh~Aa~~-G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~-d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      .+.|+||+|+.. |++++|+        +|++.|++++... +..|+||||+||..|+.++|++|+++|++         
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~--------~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---------  260 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMA--------DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---------  260 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHH--------HHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CCCcHHHHHHHccCCHHHHH--------HHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            456899999999 9999999        8889998888742 26899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLS  242 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  242 (399)
                                       +|.+|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus       261 -----------------vn~~d~-~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          261 -----------------VNQADS-AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             -----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------CCCCCC-CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                             899998 6999999999999999999999999 999999999999999999999999999999


Q ss_pred             hcc
Q psy1036         243 TKL  245 (399)
Q Consensus       243 ~~~  245 (399)
                      ...
T Consensus       322 ~~~  324 (368)
T 3jue_A          322 LAK  324 (368)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.85  E-value=2.7e-22  Score=182.55  Aligned_cols=111  Identities=14%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             hhhhCCCCCcc--cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCc
Q psy1036         112 YLVSSGDFPTI--LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNE  189 (399)
Q Consensus       112 ~Ll~~g~~~~~--~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~  189 (399)
                      .|++.|++++.  ..+..|.||||+||..|+.+++++|++.|++                          +|.+|. .|+
T Consensus         3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~d~-~g~   55 (229)
T 2vge_A            3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND--------------------------PSQPNE-EGI   55 (229)
T ss_dssp             -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--------------------------TTCCCT-TSC
T ss_pred             ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC--------------------------CCCCCC-CCC
Confidence            56677766554  2344577899999999999999999999987                          788998 699


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhh
Q psy1036         190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKV  250 (399)
Q Consensus       190 TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~  250 (399)
                      ||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|++.+.....
T Consensus        56 tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           56 TALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA  115 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            9999999999999999999999 99999999999999999999999999999998755443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=9.5e-21  Score=154.16  Aligned_cols=90  Identities=29%  Similarity=0.448  Sum_probs=85.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      +|+||||+|+..|+.+++++|++.|++                          ++..|. .|+||||+|+..|+.+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~~~~   53 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------VNAKDK-NGRTPLHLAARNGHLEVVKL   53 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC--------------------------CCCcCC-CCCcHHHHHHHcCcHHHHHH
Confidence            489999999999999999999999887                          788888 69999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      |+++| ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        54 Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (126)
T 1n0r_A           54 LLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (126)
T ss_dssp             HHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHcC-CCCcccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            99999 89999999999999999999999999999864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=4.4e-22  Score=175.40  Aligned_cols=153  Identities=14%  Similarity=-0.001  Sum_probs=120.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHhccCCCCCccccc
Q psy1036          86 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP----AMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        86 ~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~----~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      +.++|+.||+.|+++.|+        .++..+.+  ...+..|+||||+|+..|+.    +++++||+.|++        
T Consensus         6 ~~~~l~~Aa~~g~~~~~~--------~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad--------   67 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFL--------ELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD--------   67 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHH--------HHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC--------
T ss_pred             cccHHHHHHHcCCHHHHH--------HHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC--------
Confidence            446899999999999999        44455532  21224699999999999975    599999999998        


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCC------HHHHHHHHhCCCCCcccCCCCCC-cHHHHHHhCCC
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS------VECVKRLIGCAKIQTSVRNKEGK-TPLDVCFKMPS  234 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~------~~iv~~LL~~g~a~~~~~d~~G~-TpL~~A~~~g~  234 (399)
                                        +|.+|. .|+||||+|+..|+      .++|++|+++| ++++.+|..|+ ||||+|+..+.
T Consensus        68 ------------------vn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~  127 (186)
T 3t8k_A           68 ------------------IKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFV  127 (186)
T ss_dssp             ------------------SSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCS
T ss_pred             ------------------CCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCC
Confidence                              899998 79999999999997      68899999999 99999999999 99999999554


Q ss_pred             -----HHHHHHHHh-ccCchhhcccCCCCccchhhhhchHHHHHHHHH
Q psy1036         235 -----VDSMGPLST-KLTPTKVATKSEGTEEGERVFDNKEEALLFIKK  276 (399)
Q Consensus       235 -----~~iv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (399)
                           .+++++|++ .+.......+.+.+...+.......+..+.+..
T Consensus       128 ~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                 568999998 776655555554444444444455566666554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=6.8e-21  Score=158.44  Aligned_cols=91  Identities=21%  Similarity=0.215  Sum_probs=86.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHH
Q psy1036         126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK  205 (399)
Q Consensus       126 ~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~  205 (399)
                      ..|.||||+||..|+.+++++|++.|++                          +|..|. .|+||||+|+..|+.++++
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v~   64 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGAD--------------------------VNAKDE-YGLTPLYLATAHGHLEIVE   64 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCC--------------------------CCCcCC-CCCCHHHHHHHcCCHHHHH
Confidence            3578999999999999999999999987                          788998 6999999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       206 ~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      +|+++| ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        65 ~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  102 (136)
T 2jab_A           65 VLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH  102 (136)
T ss_dssp             HHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999 99999999999999999999999999999864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=1.7e-22  Score=197.19  Aligned_cols=128  Identities=13%  Similarity=0.041  Sum_probs=87.5

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc--cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccc
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI--LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  161 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~--~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~  161 (399)
                      .++.||||+||..|+.++|+        +|++.|+....  ..+..|+||||+||..|+.++|++|+++|++...     
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~--------~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-----  156 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALD--------TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-----  156 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHH--------HHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-----
T ss_pred             CCcCCHHHHHHHcCCHHHHH--------HHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-----
Confidence            34569999999999999999        88888862211  1233578999999999999999999999974110     


Q ss_pred             cCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCccc--CCCCCCcHHHHHH-hCCCHHHH
Q psy1036         162 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPLDVCF-KMPSVDSM  238 (399)
Q Consensus       162 a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~--~d~~G~TpL~~A~-~~g~~~iv  238 (399)
                                        .+..+.  ++||||+||..|+.++|++|+++| ++++.  .|..|+||||+|+ .+|+.+++
T Consensus       157 ------------------~~i~~~--~~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          157 ------------------AMIQAE--NYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             ------------------HHHSHH--HHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             ------------------cccCCC--CCCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence                              011122  266666666666666666666666 66555  6666666666666 66666666


Q ss_pred             HHHHhcc
Q psy1036         239 GPLSTKL  245 (399)
Q Consensus       239 ~~Ll~~~  245 (399)
                      ++|++..
T Consensus       216 ~~Ll~~g  222 (376)
T 2aja_A          216 NFLLDCP  222 (376)
T ss_dssp             HHHTTSH
T ss_pred             HHHHhCC
Confidence            6666543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1e-20  Score=157.40  Aligned_cols=103  Identities=20%  Similarity=0.173  Sum_probs=94.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHH
Q psy1036         124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  203 (399)
Q Consensus       124 ~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~i  203 (399)
                      ++..|+||||+|+..|+.+++++|++.|++                          ++.+|. .|+||||+|+..|+.++
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~   58 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSD--------------------------PNVKDH-AGWTPLHEACNHGHLKV   58 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------SCCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCcCCC-CCCCHHHHHHHcCCHHH
Confidence            577899999999999999999999999887                          788998 69999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccC
Q psy1036         204 VKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKS  254 (399)
Q Consensus       204 v~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  254 (399)
                      +++|+++| ++++.+|..|+||||+|+..|+.+++++|++...........
T Consensus        59 ~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  108 (137)
T 3c5r_A           59 VELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF  108 (137)
T ss_dssp             HHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHcC-CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            99999999 999999999999999999999999999999987554444333

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.2e-20  Score=146.29  Aligned_cols=93  Identities=28%  Similarity=0.378  Sum_probs=85.3

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      +|+||||+||..|+.++++        +|++.|.+++. ++..|+||||+|+..|+.+++++|++.|++           
T Consensus         1 ~g~t~L~~A~~~~~~~~v~--------~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----------   60 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVK--------LLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----------   60 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCCcHHHHHHHcCCHHHHH--------HHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            3679999999999999999        88899988887 577899999999999999999999999987           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  214 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~  214 (399)
                                     +|.+|. .|+||||+|+..|+.+++++|+++| ++
T Consensus        61 ---------------~~~~d~-~g~t~l~~A~~~~~~~~~~~Ll~~g-a~   93 (93)
T 1n0q_A           61 ---------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-AY   93 (93)
T ss_dssp             ---------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             ---------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence                           789998 6999999999999999999999999 53

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=8e-21  Score=153.09  Aligned_cols=107  Identities=23%  Similarity=0.244  Sum_probs=82.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.||||+||..|+.++++        +|++.|.+++. .+..|+||||+|+..|+.+++++|++.|++         
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~--------~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------   67 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVK--------KLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---------   67 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHH--------HHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------
Confidence            566778888888888888888        77777777666 456788888888888888888888887776         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL  226 (399)
                                       ++.+|. .|+||||+|+..|+.+++++|+++| ++++.++..|.||-
T Consensus        68 -----------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 -----------------VNARSK-DGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             -----------------TTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             -----------------CcccCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence                             677777 5888888888888888888888888 78888888888774

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=2.7e-20  Score=167.72  Aligned_cols=92  Identities=27%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  204 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv  204 (399)
                      +..|.||||+||..|+.+++++|++.|++                          +|.+|. .|+||||+||..|+.++|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v  122 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG--------------------------VNGLDK-AGSTALYWACHGGHKDIV  122 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC--------------------------ccccCC-CCCCHHHHHHHcCCHHHH
Confidence            33578999999999999999999999887                          788998 699999999999999999


Q ss_pred             HHHHhC-CCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         205 KRLIGC-AKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       205 ~~LL~~-g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      ++|+++ | ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus       123 ~~Ll~~~g-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  162 (222)
T 3ehr_A          123 EMLFTQPN-IELNQQNKLGDTALHAAAWKGYADIVQLLLAK  162 (222)
T ss_dssp             HHHTTSTT-CCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999 7 99999999999999999999999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=1.6e-19  Score=147.29  Aligned_cols=98  Identities=19%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHH
Q psy1036         126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK  205 (399)
Q Consensus       126 ~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~  205 (399)
                      ..|.||||+|+..|+.+++++|++.|++                          +|..|. .|+||||+|+..|+.++++
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v~   57 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGED--------------------------VNRTLE-GGRKPLHYAADCGQLEILE   57 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTSCCT-TSSCHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------cCccCC-CCCcHHHHHHHcCCHHHHH
Confidence            4578999999999999999999999887                          788998 6999999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhc
Q psy1036         206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVA  251 (399)
Q Consensus       206 ~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~  251 (399)
                      +|+++| ++++.+|..|+||||+|+..|+.+++++|++........
T Consensus        58 ~Ll~~g-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  102 (123)
T 3aaa_C           58 FLLLKG-ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK  102 (123)
T ss_dssp             HHHTTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            999999 999999999999999999999999999999987554333

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=2.1e-19  Score=144.72  Aligned_cols=100  Identities=28%  Similarity=0.288  Sum_probs=92.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHH
Q psy1036         124 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  203 (399)
Q Consensus       124 ~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~i  203 (399)
                      +|..|+||||+||..|+.+++++|++.|++                          +|.+|. .|+||||+|+..|+.++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~~   57 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--------------------------VNARSK-DGNTPLHLAAKNGHAEI   57 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--------------------------SSCCCS-SSCCTTHHHHTTTCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCCcCC-CCCCHHHHHHHcCcHHH
Confidence            467899999999999999999999999887                          788998 69999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhc
Q psy1036         204 VKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVA  251 (399)
Q Consensus       204 v~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~  251 (399)
                      +++|+++| ++++.+|..|+||||+|+..++.+++++|++.+......
T Consensus        58 ~~~Ll~~g-~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~  104 (115)
T 2l6b_A           58 VKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR  104 (115)
T ss_dssp             HHHHTTTT-CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHH
T ss_pred             HHHHHHcC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcC
Confidence            99999999 999999999999999999999999999999988654443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=1.6e-19  Score=171.07  Aligned_cols=111  Identities=22%  Similarity=0.214  Sum_probs=95.2

Q ss_pred             CCccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc
Q psy1036          82 LKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        82 ~~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      .+..|.||||+||..   |++++|+        +|++.|++++. .|..|+||||+|+..|+.+++++|++.|++     
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~--------~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-----  251 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVD--------FIIQNGGHLDA-KAADGNTALHYAALYNQPDCLKLLLKGRAL-----  251 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHH--------HHHHHSSCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHH--------HHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            367899999999997   8999999        88899998888 477899999999999999999999999998     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                                           ++.+|. .|+||||+|+..|+.+++++|+++| ++      .|.||||+|+.+|+.
T Consensus       252 ---------------------~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          252 ---------------------VGTVNE-AGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ---------------------CSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--------
T ss_pred             ---------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence                                 789998 6999999999999999999999999 65      589999999998864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.77  E-value=1.3e-19  Score=176.68  Aligned_cols=119  Identities=12%  Similarity=0.041  Sum_probs=93.8

Q ss_pred             chHHHHHHHH-cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          86 ELVKLRKLIE-KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        86 ~~T~Lh~Aa~-~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      ++++++.|+. .++.+.++        +++..|.+        ++||||+||..|+.++|++|++.|+...         
T Consensus        65 ~ll~~~~a~~~~~~~~~~~--------~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~---------  119 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWS--------DAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDE---------  119 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHH--------HHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCS---------
T ss_pred             HHHHHHHHHhcCCCHHHHH--------HHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHH---------
Confidence            4568888877 57888888        77777643        4699999999999999999999987411         


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC---cccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ---TSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~---~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                    ..+..+. .|+||||+||..|+.++|++|+++| ++   .++.+.+ +||||+|+..|+.+++++|
T Consensus       120 --------------~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~L  182 (376)
T 2aja_A          120 --------------IVKVIQA-ENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAEN-YHAFRLAAENGHLHVLNRL  182 (376)
T ss_dssp             --------------SCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHH
T ss_pred             --------------HHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCC-CCHHHHHHHCCCHHHHHHH
Confidence                          0233445 5899999999999999999999999 65   3343333 9999999999999999999


Q ss_pred             HhccC
Q psy1036         242 STKLT  246 (399)
Q Consensus       242 l~~~~  246 (399)
                      ++.+.
T Consensus       183 l~~ga  187 (376)
T 2aja_A          183 CELAP  187 (376)
T ss_dssp             HHSCG
T ss_pred             HHcCC
Confidence            98763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=6.9e-19  Score=140.96  Aligned_cols=89  Identities=27%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  204 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv  204 (399)
                      +..|+|+||+||..|+.+++++|++.|++                          +|.+|. .|+||||+||..|+.+++
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------i~~~d~-~g~tpLh~A~~~~~~~~v   73 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGAD--------------------------VAAKDK-NGSTPLHLAARNGHLEVV   73 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCccCC-CCCCHHHHHHHcCCHHHH
Confidence            55789999999999999999999999887                          788998 699999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         205 KRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       205 ~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                      ++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus        74 ~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           74 KLLLEAG-ADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHcC-CCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999 99999999999999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.77  E-value=6.6e-19  Score=161.49  Aligned_cols=93  Identities=20%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         127 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       127 ~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      .|+||||+||..|+.+++++|++ |++                          +|.+|. .|+||||+||..|+.++|++
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~g~~~~v~~   95 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCVRL   95 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC--------------------------TTCBCT-TSCBHHHHHHHHTCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC--------------------------CCCcCC-CCCCHHHHHHHCCCHHHHHH
Confidence            58999999999999999999999 776                          789998 69999999999999999999


Q ss_pred             HHhCCCCCcccCC-CCCCcHHHHHHhCCCHHHHHHHHhccCch
Q psy1036         207 LIGCAKIQTSVRN-KEGKTPLDVCFKMPSVDSMGPLSTKLTPT  248 (399)
Q Consensus       207 LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~  248 (399)
                      |+++| ++++.+| ..|+||||+|+..|+.+++++|++.+...
T Consensus        96 Ll~~g-a~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A           96 LAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             HHHTT-CCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999 9999998 88999999999999999999999986543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.7e-17  Score=132.83  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=82.3

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      ...+.+|.|+||+||..|+.++|+        +|++.|.+++. .+..|+||||+||..|+.+++++|+++|++      
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~--------~Ll~~g~~i~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~------   82 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVR--------ILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------   82 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHH--------HHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             cccCCccchHHHHHHHcCCHHHHH--------HHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            445788999999999999999999        88888988887 477899999999999999999999999987      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                                          ++.+|. .|+||||+|+..|+.+++++|
T Consensus        83 --------------------~~~~d~-~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 --------------------VXAQDK-FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHHTCHHHHHHH
T ss_pred             --------------------cccccc-CCCcHHHHHHHcCCHHHHHHh
Confidence                                788998 699999999999999999987

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=1.2e-17  Score=145.98  Aligned_cols=95  Identities=20%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHH
Q psy1036         126 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK  205 (399)
Q Consensus       126 ~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~  205 (399)
                      ..|+||||+||..|+.+++++|++ |++                          +|.+|. .|+||||+|+..|+.++|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~~v~   93 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCVR   93 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC--------------------------CCCcCC-CCCCHHHHHHHcCCHHHHH
Confidence            367899999999999999999999 776                          789998 6999999999999999999


Q ss_pred             HHHhCCCCCcccCC-CCCCcHHHHHHhCCCHHHHHHHHhccCchh
Q psy1036         206 RLIGCAKIQTSVRN-KEGKTPLDVCFKMPSVDSMGPLSTKLTPTK  249 (399)
Q Consensus       206 ~LL~~g~a~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~  249 (399)
                      +|+++| ++++.+| ..|+||||+|+..|+.+++++|++......
T Consensus        94 ~Ll~~g-a~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  137 (183)
T 3deo_A           94 LLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE  137 (183)
T ss_dssp             HHHHTT-CCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             HHHHcC-CCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc
Confidence            999999 9999998 899999999999999999999999875433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.71  E-value=2.5e-17  Score=159.97  Aligned_cols=90  Identities=16%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCC--CCCCchHHHHHHHcCCHHH
Q psy1036         127 CRYNALHVSTKA-VNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPD--KALNETPLHFAAKFGSVEC  203 (399)
Q Consensus       127 ~g~T~LH~Aa~~-g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d--~~~G~TpLh~Aa~~g~~~i  203 (399)
                      .+.|+||+|+.. |+.+++++|++.|++                          +|..+  . .|+||||+|+..|+.++
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad--------------------------vn~~~~~~-~g~TpLh~Aa~~g~~~i  250 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD--------------------------VNWVNGGQ-DNATPLIQATAANSLLA  250 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC--------------------------TTCCCTTT-TCCCHHHHHHHTTCHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC--------------------------CCcccccc-CCCCHHHHHHHCCCHHH
Confidence            456899999999 999999999999998                          67776  6 69999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhc
Q psy1036         204 VKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       204 v~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  244 (399)
                      |++||++| ++++.+|..|+||||+|+..|+.+++++|++.
T Consensus       251 v~~LL~~G-advn~~d~~G~TpLh~A~~~g~~~~v~~LL~~  290 (368)
T 3jue_A          251 CEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLFLKR  290 (368)
T ss_dssp             HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHcC-CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            99999999 99999999999999999999999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.70  E-value=4e-17  Score=152.69  Aligned_cols=99  Identities=19%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             CCCCCccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC
Q psy1036          79 FKSLKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~  155 (399)
                      +...+..|.||||+||..   |+.++|+        +|++.|++++. +|..|+||||+|+..|+.++|++|+++|++  
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~--------~Ll~~ga~in~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--  230 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVD--------FLVQNSGNLDK-QTGKGSTALHYCCLTDNAECLKLLLRGKAS--  230 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHH--------HHHHHCSCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHH--------HHHHCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--
Confidence            344567899999999999   8999999        88899999888 577899999999999999999999999998  


Q ss_pred             CccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy1036         156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  214 (399)
Q Consensus       156 ~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~  214 (399)
                                              +|.+|. .|+||||+|+..|+.+++++|+++| ++
T Consensus       231 ------------------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~  263 (278)
T 1dcq_A          231 ------------------------IEIANE-SGETPLDIAKRLKHEHCEELLTQAL-SG  263 (278)
T ss_dssp             ------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH-TT
T ss_pred             ------------------------CCCccC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence                                    899998 6999999999999999999999999 53

>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}

Probab=93.31  E-value=0.044  Score=36.67  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             ccccHHHHHHHHHhccccccCCCCCHHHHHHHHhc
Q psy1036           3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYH   37 (399)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~~   37 (399)
                      ||++-.|+...+++-.++++|.|.+.++|+.|+..
T Consensus        16 Iy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~~   50 (53)
T 3bsu_A           16 VFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRK   50 (53)
T ss_dssp             EESSHHHHHHHHTTCTTCEEEEESSHHHHHHHHHC
T ss_pred             eECCHHHHHHHhcCCCCCccCCCCCHHHHHHHHHh
Confidence            78999999999999999999999999999999984

>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2

Probab=92.33  E-value=0.045  Score=35.62  Aligned_cols=33  Identities=15%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             ccccHHHHHHHHHhccccccCCCCCHHHHHHHH
Q psy1036           3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA   35 (399)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~   35 (399)
                      ||++-.|+...+++-.++++|.|.+.++|+.|+
T Consensus        14 Iy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l   46 (47)
T 1qhk_A           14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFL   46 (47)
T ss_dssp             EEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHH
T ss_pred             eECCHHHHHHHhcCCCCCccCCCCCHHHHHHHh
Confidence            788999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.004
d1qhka_	47	d.100.1.2 (A:) N-terminal domain of RNase HI {Bake	0.003
d1qhka_	47	d.100.1.2 (A:) N-terminal domain of RNase HI {Bake	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDI------ 174
           TILH     + +   + A    +  ++  I+           ++  S     +       
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 175 --------LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
                   ++   +N  D    +T L+ AA+ G++  V  L+        + NK G  P+
Sbjct: 239 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPV 296

Query: 227 D 227
           D
Sbjct: 297 D 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 151 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
             + +F +LL +      +  +     L +N P      TPLH+     ++E VK L+
Sbjct: 76  QQHVSFDSLLQE------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 9e-08
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 129 YNALHVSTKAVNPAMTEMLLE----------IIGNPAFTNLLYDSDTPSYIERSDILLDL 178
             AL  + +  +  + ++LL+           +G  A  + L  SD       + +LLD 
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 179 --YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
              VN   +   +TPL  A +   +  V+RL+    I+ +  + +GKT L +
Sbjct: 209 GADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 94  IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN 153
            EKG++  ++ L+ D     V++ D            +      +   A+T +LL+   +
Sbjct: 156 AEKGHVEVLKILL-DEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGAD 211

Query: 154 PAFTNLLYDSDTP-------SYIERSDILLDLY---VNTPDKALNETPLHFAAKFGSVEC 203
                      TP        ++     LL+     +N  D    +T L  A +    + 
Sbjct: 212 VNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKTALLLAVELKLKKI 268

Query: 204 VKRLI 208
            + L 
Sbjct: 269 AELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 189 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL 245
            T L  AA+ G VE +K L+       +  +  G+  L           +  ++  L
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 226
           +   L  A +   V+ V++L+   A +      + G TPL
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPL 43

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
           VN  ++    TPLH A +    + V+ L+  
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
            PLH A        V+ L+         ++++G+ PL
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
           TPL  A   G  +    L+     +  + + +G    DV
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 4   FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 63
           +     A L ++++                  +H +  +   LL    SP +      + 
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201

Query: 64  LPQVSSLAAAEKPSPFKSLKSQELVK-------LRKLIEKGNLADVRKLVWDNPRYLVSS 116
           L   +     E              +       L    ++G+   V  L+       + +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261

Query: 117 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE------IIGNPAFTNLLYDSDTPSYIE 170
               T LH   +           +  + ++L++            +T L   S   +   
Sbjct: 262 KSGLTPLHLVAQEG---------HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312

Query: 171 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
              +L           L  +PLH AA+ G  + V  L+       +  + +G TPL +
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG 239
            N  +    ETPLH AA+ G  E  K L+   K + + + K+ +TPL    ++   + + 
Sbjct: 26  PNVSNVK-VETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 240 PL 241
            L
Sbjct: 84  LL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 226
           TPLH A+  G +  VK L+       +V N + +TPL
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPL 37

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 131 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 181
            LHV++   +  + + LL+   +P  +N     +TP        + E +  LL     VN
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 182 TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL 241
              K  ++TPLH AA+ G    VK L+                      +      +  L
Sbjct: 61  AKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCG 301
             + +   +  K          +     A L ++++                  +H +  
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 302 VNTSLLEAPASPSTVTAADPSAL 324
           +   LL    SP +      + L
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPL 202

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 189 ETPLHFAAKFGSVECVKRLIGC---AKIQTSVRNKEGKTPLDVCFK 231
           +TPLH A   G++  V RL+        +  + N   +TPL +   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 191 PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDV 228
            LH A+  G +  V+ L+  +   +S++N    TPL V
Sbjct: 180 ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMV 216

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 189 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 226
           +T LH A        +  L+          ++N  G+T L
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/173 (9%), Positives = 37/173 (21%), Gaps = 14/173 (8%)

Query: 36  YHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIE 95
              +      LL+   S     +       Q  +   +  P+   S  + E  +  +  +
Sbjct: 87  RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

Query: 96  KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 155
                +        P ++        ++       A     +         L       +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206

Query: 156 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 208
              LL             +               TPL  A    +    + L 
Sbjct: 207 VLELL-------------LKAGADPTARMYG-GRTPLGSALLRPNPILARLLR 245

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 175 LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLD 227
           +    VN  D   N T LH+ A   S E  + LI         A    +  + +  TPL 
Sbjct: 20  ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

Query: 228 VCFKMPSVDSM 238
           +         +
Sbjct: 80  LAVLARRRRLV 90

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 188 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDV 228
            +TP+  AA+ G +E V  LI   A +     +    T   +
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 1/31 (3%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
           V   D   + T    A        V     C
Sbjct: 247 VEAVDAT-DHTARQLAQANNHHNIVDIFDRC 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 188 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVC 229
             TPLH AA +G  E  + L+          NK G+T  DV 
Sbjct: 232 GWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVA 272

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 90  LRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEML 147
           +  L   G L ++++ +  +   L +  D    T LH  C      +    +   +    
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 64

Query: 148 LEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVK 205
                + A  + L+ + +    E    LL     VN  ++    TPLH+AA     E   
Sbjct: 65  ---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAV 120

Query: 206 RLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFD 265
            L+         ++    T +       ++  +  L      T +      T       +
Sbjct: 121 MLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 266 NKEEAL-LFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLE 308
            + E   L + +   I  ++ +  +     A  G   +   ++E
Sbjct: 180 ERVEEAKLLVSQGASIYIEN-KEEKTPLQVAKGGLGLILKRMVE 222

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 14/183 (7%)

Query: 67  VSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDN--PRYLVSSGDFPTILH 124
           + ++   E     + +       L +     N   +  L +      +L  + +   +  
Sbjct: 4   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 125 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL-----Y 179
             C Y A +        +         G  +       + T       D L  L      
Sbjct: 64  LLCLYYAHYNRNAKQLWSD----AHKKGIKSEVICFVAAIT-GCSSALDTLCLLLTSDEI 118

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDVCFKMPSVDSM 238
           V     A N      AA+ G +  + RL         ++   E      +  +   +  +
Sbjct: 119 VKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 239 GPL 241
             L
Sbjct: 178 NRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 20/127 (15%)

Query: 95  EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP 154
           E G       +     R      +               + TK+           + G  
Sbjct: 232 EYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVTKSEC---------LQGFY 278

Query: 155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ETPLHFAAKFGSVECVKRLI 208
              NL+  +D    ++    LL +                   L  A + G+      L+
Sbjct: 279 MLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

Query: 209 GCAKIQT 215
               +  
Sbjct: 338 SIPSVLA 344

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)

Query: 189 ETPLHFAAKFGSVECVKRLI---GCAKIQTSVRNKEGKTPLDVCFKMP 233
           ++ LH A           +I          + +N   +TPL +     
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 50

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 79  FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVST 136
            +++K++++  L +    G   D+        +  +++G  P  T LH   R        
Sbjct: 11  CEAVKTRDIFGLLQAYADG--VDL------TEKIPLANGHEPDETALHLAVRSVDRT--- 59

Query: 137 KAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ET 190
              +  + + L++  GN         +         +      +     ++       ET
Sbjct: 60  ---SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116

Query: 191 PLHFAAKFGSVECVKRLI 208
           PL  A +     C + L 
Sbjct: 117 PLDIAKRLKHEHCEELLT 134

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP 233
             L  AA  G V+ V+RL+    +     N+ GKT L V     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS 47

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIG 209
           ++  D     TPL  A + G+ + V  L G
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQG 154

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 210
           +N       ET LH AA+F   +  KRL+  
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 121 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY- 179
           T LH     N        VN  +         +      L+ +      E S  LLD + 
Sbjct: 125 TALHWAAAVNNTEA----VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 180

Query: 180 -VNTPDKALNETPLHFAAKFGSVECVKRL 207
                D   +  P   A++    + V+ L
Sbjct: 181 NREITDHM-DRLPRDVASERLHHDIVRLL 208

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 189 ETPLHFAAKFGSVECVKRLI 208
           +    +A K G ++ VK  +
Sbjct: 3   DKEFMWALKNGDLDEVKDYV 22

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 179 YVNTPDKALNETPLHFAAKFGSVECVKRLI 208
            V   +    +T    A  +G  E V  + 
Sbjct: 125 NVGHRNHK-GDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 190 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMP 233
             L  AA  G +E +  L+    +  + +N  G+T L V     
Sbjct: 3   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKLGN 45

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 190 TPLHFAAKFGSVECVKRLI 208
             L  AA+ G  + V+ L+
Sbjct: 4   KKLLEAARAGQDDEVRILM 22

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 180 VNTPDKALNETPLHFAAKFGSVECVKRL 207
           V+T  K   +T    +   G+ +  + L
Sbjct: 126 VHTQSKF-CKTAFDISIDNGNEDLAEIL 152

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 5/32 (15%), Positives = 15/32 (46%)

Query: 3  VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 34
          +++   E    +       +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 5/32 (15%), Positives = 15/32 (46%)

Query: 263 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 294
           +++   E    +       +K F +++ A++F
Sbjct: 14  IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 188 NETPLHFAAKFGSVECVKRLIGCA 211
              P+  A + G  +  + L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 188 NETPLHFAAKFGSVECVKRLIGC 210
           +   L  AA  G VE V+ L+  
Sbjct: 3   SADWLATAAARGRVEEVRALLEA 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.84
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.81
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.78
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.74
d1qhka_	47	N-terminal domain of RNase HI {Baker's yeast (Sacc	93.28

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-28  Score=235.18  Aligned_cols=286  Identities=17%  Similarity=0.131  Sum_probs=172.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC------CCcccc
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------AFTNLL  160 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~------~~~~l~  160 (399)
                      +||||.||..|+.++|+        +|++.|++++. .|..|+||||+||..|+.++|++||++|++.      +.++++
T Consensus         1 ~TpL~~Aa~~g~~~~v~--------~Ll~~g~~in~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~   71 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVK--------NLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   71 (408)
T ss_dssp             CCHHHHHHHHTCHHHHH--------HHHHTTCCSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CChHHHHHHCcCHHHHH--------HHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            58999999999999999        88899999888 4778999999999999999999999999874      344555


Q ss_pred             ccCCChhHHH----------------------------------HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         161 YDSDTPSYIE----------------------------------RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       161 ~a~~~~~~~~----------------------------------~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      +++..+....                                  ......+...+..+. .|.++|++|+..++.+++++
T Consensus        72 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          72 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccccc-ccchHHHHHHHcCCHHHHHH
Confidence            4432221110                                  111222344455666 57778888888888888888


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccch-------------------------
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGE-------------------------  261 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~-------------------------  261 (399)
                      |+++| ++++..+.+|.+|||+|+..|+.+++++|+.++.........+.+....                         
T Consensus       151 ll~~~-~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  229 (408)
T d1n11a_         151 LLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV  229 (408)
T ss_dssp             HHHTT-CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcC-CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCC
Confidence            88777 7777777777888888888888888777777653222111111111010                         


Q ss_pred             --------hhhhchHHHHHHHHHhhcccc----cccc--------ChHHHHHH-HhcCCccCCCC--CCCCCCCCCcccc
Q psy1036         262 --------RVFDNKEEALLFIKKNKKIRF----KSFR--------NFQDAQNF-AYHGSCGVNTS--LLEAPASPSTVTA  318 (399)
Q Consensus       262 --------~~~~~~~~~l~~~~~~k~~r~----~~~~--------~~~~a~~~-a~~~~~~~~~s--~~~~~~~~s~~~~  318 (399)
                              ++.....+.++..........    ..+.        ...+..++ ...|. +.+..  ...++    .+..
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~-~~~~~~~~~~t~----L~~~  304 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTP----LHVA  304 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCSSCCCH----HHHH
T ss_pred             CCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCC-cccccccccccc----chhh
Confidence                    111111111221111100000    0000        00111111 11111 11000  00000    0000


Q ss_pred             CCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhccc
Q psy1036         319 ADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       319 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      ...+ ...+... ..+.+......+..+.||||.|++.|+.++|+.|+..||++++.+.+|.|+||.|++.-
T Consensus       305 ~~~~-~~~~~~~-ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~  374 (408)
T d1n11a_         305 SHYG-NIKLVKF-LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG  374 (408)
T ss_dssp             HHSS-CSHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             cccC-cceeeee-eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            0000 0011111 22334555667778899999999999999999999999999999999999999998863

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.6e-28  Score=220.11  Aligned_cols=131  Identities=18%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc--cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI--LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT  157 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~--~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~  157 (399)
                      .-.+.+|.||||+||+.|+.++|+        +|++.|+++..  .++..|+||||+||..|+.+++++|++.|++    
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~--------~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----   70 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLD--------FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG----   70 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHH--------HHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHH--------HHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc----
Confidence            345689999999999999999999        77777765442  2566899999999999999999999999988    


Q ss_pred             cccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC-------------------------
Q psy1036         158 NLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK-------------------------  212 (399)
Q Consensus       158 ~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~-------------------------  212 (399)
                                            ++.+|. .|+||||+|+..|+.+++++|++.+.                         
T Consensus        71 ----------------------i~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (255)
T d1oy3d_          71 ----------------------VLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP  127 (255)
T ss_dssp             ----------------------SSCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------
T ss_pred             ----------------------cccccc-ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHH
Confidence                                  788898 69999999999999999999986542                         


Q ss_pred             ---------------------CCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         213 ---------------------IQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       213 ---------------------a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                           .+++.+|.+|+||||+|+.+++.+++++|++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~  181 (255)
T d1oy3d_         128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG  181 (255)
T ss_dssp             ----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccc
Confidence                                 234567888889999998888888888888754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=207.99  Aligned_cols=205  Identities=21%  Similarity=0.226  Sum_probs=149.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      +.|+.+|..|+++.|+++|...       +..++. +|..|+||||+||..|+.+++++|+..+..              
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~-------~~~~~~-~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--------------   62 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILAD-------KSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVP--------------   62 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHC-------GGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHhC-------CCcCcC-cCCCCCCHHHHHHHhhhhcccccccccccc--------------
Confidence            5799999999999999655443       334343 577899999999999999999999998876              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                                  ....+. .+.+++++|+..|+.+++++|+++| ++++.+|..|+||||+|+.+|+.+++++|++.+..
T Consensus        63 ------------~~~~~~-~~~~~~~~~~~~~~~~i~~~Ll~~~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d  128 (223)
T d1uoha_          63 ------------VNDKDD-AGWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN  128 (223)
T ss_dssp             ------------SCCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ------------cccccc-cccccccccccccccchhHHHhccC-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC
Confidence                        445555 4788888888888888888888888 78888888888888888888888888888887643


Q ss_pred             hhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCccc
Q psy1036         248 TKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQV  327 (399)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~  327 (399)
                      .......+..  .++. .........++.                 +...+                             
T Consensus       129 ~~~~~~~~~t--~L~~-a~~~~~~~~~~~-----------------L~~~~-----------------------------  159 (223)
T d1uoha_         129 PDAKDHYEAT--AMHR-AAAKGNLKMIHI-----------------LLYYK-----------------------------  159 (223)
T ss_dssp             TTCCCTTSCC--HHHH-HHHTTCHHHHHH-----------------HHHTT-----------------------------
T ss_pred             CCCcCCCCCc--cchh-hhhcCCcchhhh-----------------hcccc-----------------------------
Confidence            3222222111  1111 000001111110                 11011                             


Q ss_pred             ccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHh
Q psy1036         328 SSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVV  386 (399)
Q Consensus       328 ~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~  386 (399)
                               .+....+..+.||||.|+..|+.++|+.|+..|+++++.+.+|.|+||.|
T Consensus       160 ---------~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         160 ---------ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             ---------CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             ---------ceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence                     11223345678999999999999999999999999999999999999998

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.1e-28  Score=225.11  Aligned_cols=260  Identities=12%  Similarity=0.015  Sum_probs=163.6

Q ss_pred             HHHHHHHH-cCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          88 VKLRKLIE-KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        88 T~Lh~Aa~-~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      ||||++++ .|+..+++        .|.+.+.+..  ....|+||||+||..|+.++|++|+.....             
T Consensus         2 ~p~~~~~~~~~~~~~~~--------~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~-------------   58 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITE--------PITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAK-------------   58 (277)
T ss_dssp             CCCHHHHHHHSSSCCCS--------CCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHH-------------
T ss_pred             ChHHHHHHhCCCHHHHH--------HHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchh-------------
Confidence            56775555 56666666        6666664433  234699999999999999999998765432             


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccC
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLT  246 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  246 (399)
                           .++..|+++|.+|. .|+||||+|+..|+.++|++||++| ++++.+|.+|+|||++|+..++.+++..+.....
T Consensus        59 -----~~l~~Gadvn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~  131 (277)
T d2fo1e1          59 -----ECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK  131 (277)
T ss_dssp             -----HHHHTCCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH
T ss_pred             -----HHHHcCCCccccCC-CCCeeeccccccccccccccccccc-cccccccccccccccchhhhcchhhhhhhhhccc
Confidence                 23345566999999 7999999999999999999999999 9999999999999999999999999998876542


Q ss_pred             ch-hhcccCCCCccch--hhhhchHHHHHHHHHhhcc-ccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCC
Q psy1036         247 PT-KVATKSEGTEEGE--RVFDNKEEALLFIKKNKKI-RFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPS  322 (399)
Q Consensus       247 ~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~k~~-r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~  322 (399)
                      .. .+...+.......  .......+.+..+...... .......     ...   . ........+++    +.....+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~-~~~~~~g~t~L----~~~~~~~  198 (277)
T d2fo1e1         132 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG-----AAR---K-DSEKYKGRTAL----HYAAQVS  198 (277)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS-----GGG---T-SSSSCCCCCTH----HHHHSSC
T ss_pred             ccccccccccccchhHHHHHhcccccccccccccccccccccccc-----ccc---c-cccccCCCCcc----ccccccc
Confidence            11 1111111111111  0001111111111111000 0000000     000   0 00000001111    1000011


Q ss_pred             CCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         323 ALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       323 ~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                       ...+...............+..+.||||.|++.|+.++|+.|+..|+++++.+.+|-|+||.|++..+
T Consensus       199 -~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         199 -NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             -CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             -cccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence             11111122333344555566777899999999999999999999999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-26  Score=205.60  Aligned_cols=161  Identities=22%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCC-------------------------hhhhhCCCCCcccCCCCCCcHHH
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNP-------------------------RYLVSSGDFPTILHEGCRYNALH  133 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p-------------------------~~Ll~~g~~~~~~~d~~g~T~LH  133 (399)
                      ....+.+|+||||+||..|+.++++.++....                         ++|++.|.+++. .+..|+||||
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~  108 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLH  108 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEe-eCCCCCchhh
Confidence            34557889999999999999999997776632                         567777777766 4667888888


Q ss_pred             HHHHcCCHHHHHHHHhccCCCCC------ccccccCCChhHH-HHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy1036         134 VSTKAVNPAMTEMLLEIIGNPAF------TNLLYDSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  206 (399)
Q Consensus       134 ~Aa~~g~~~iv~~Ll~~ga~~~~------~~l~~a~~~~~~~-~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~  206 (399)
                      +|+..|+.+++++|+++|++++.      ++++++....... ..++...+.++|.+|. .|+||||+|+..|+.++|++
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~-~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccC-CCCceeccccccCcHHHHHH
Confidence            88888888888888888776432      2333333322222 2444556666777776 57777777777777777777


Q ss_pred             HHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         207 LIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       207 LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                      ||+.| ++++.+|.+|+||||+| ..|+.++++.|++
T Consensus       188 LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         188 LVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            77777 67777777777777776 4577777777664

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=8.4e-26  Score=209.55  Aligned_cols=237  Identities=19%  Similarity=0.115  Sum_probs=167.3

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccC
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  163 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~  163 (399)
                      .++.|+|+.||..|++++|+        +|++.|++++. .+..|+||||+|+..|+.++|++|+++|.+          
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~--------~Ll~~Gadvn~-~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~----------   98 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVL--------RLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN----------   98 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHH--------HHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CCCchHHHHHHHcCCHHHHH--------HHHHCCCCCCc-cCCCCCcHHHHHHhcCCceeeeeecccccc----------
Confidence            45679999999999999999        88899999887 577899999999999999999999999987          


Q ss_pred             CChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         164 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       164 ~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                      .+..+. .+.||||+|+..|+.++++.|+++| +..+..|..|.+|+++|+..++.+++..++.
T Consensus        99 ----------------~~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~  160 (291)
T d1s70b_          99 ----------------INQPDN-EGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (291)
T ss_dssp             ----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             ----------------cccccc-cccccccccccccccchhhcccccC-cccccccccCccccccccccccchhcccccc
Confidence                            566676 6999999999999999999999999 8999999999999999999999999998886


Q ss_pred             ccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCC
Q psy1036         244 KLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA  323 (399)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~  323 (399)
                      ...........      .............+........                   .......+++.    ..+..+ 
T Consensus       161 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~g~t~L~----~a~~~~-  210 (291)
T d1s70b_         161 RQGVDIEAARK------EEERIMLRDARQWLNSGHINDV-------------------RHAKSGGTALH----VAAAKG-  210 (291)
T ss_dssp             HHTCCHHHHHH------HHHHHHHHHHHHHHHHTCCCCC-------------------CCTTTCCCHHH----HHHHHT-
T ss_pred             ccccccccccc------cccccccccchhhhcccccccc-------------------cccCCCCChhh----HHHHcC-
Confidence            43211000000      0000000000000100000000                   00000001100    000000 


Q ss_pred             CcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         324 LPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       324 ~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                      ...+... +.+.+.+.......+.||||.|++.|+.++|+.|+..|||+++.+.+|.|+||.|.+
T Consensus       211 ~~~~~~~-Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         211 YTEVLKL-LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             Chhhhcc-cccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            1122222 223334445556677899999999999999999999999999999999999999964

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=2.8e-26  Score=210.77  Aligned_cols=157  Identities=12%  Similarity=0.112  Sum_probs=119.5

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCC------c
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF------T  157 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~------~  157 (399)
                      ..|+||||+||..|+.++|+.|+....+.++..|++++. .|..|+||||+|+..|+.++|++|+++|++++.      +
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t  109 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  109 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc-cCCCCCeeeccccccccccccccccccccccccccccccc
Confidence            358999999999999999999998888889999999998 578999999999999999999999999987432      2


Q ss_pred             cccccCCC------------------------------------------------------------------------
Q psy1036         158 NLLYDSDT------------------------------------------------------------------------  165 (399)
Q Consensus       158 ~l~~a~~~------------------------------------------------------------------------  165 (399)
                      +++++...                                                                        
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            21111000                                                                        


Q ss_pred             --------hh--HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCH
Q psy1036         166 --------PS--YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSV  235 (399)
Q Consensus       166 --------~~--~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~  235 (399)
                              +.  ....+....+.+++.+|. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|+++|+.
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCH
Confidence                    00  000122233455666777 5888888888888888888888888 78888888888888888888888


Q ss_pred             HHHHHHHh
Q psy1036         236 DSMGPLST  243 (399)
Q Consensus       236 ~iv~~Ll~  243 (399)
                      +++++|++
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            88887764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=183.72  Aligned_cols=120  Identities=23%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      .++||+||..|++++|+        +|+++|++++. .+..|+||||+|+ .|+.+++++|+++|++             
T Consensus         4 ~~~L~~Aa~~G~~~~v~--------~Ll~~gad~n~-~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-------------   60 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVR--------ALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAE-------------   60 (125)
T ss_dssp             TTHHHHHHHHTCHHHHH--------HHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-------------
T ss_pred             hhHHHHHHHCCCHHHHH--------HHHHcCCcccc-ccccccccccccc-cccccccccccccccc-------------
Confidence            36899999999999999        88899999887 4778999999775 7999999999999987             


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHh
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLST  243 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  243 (399)
                                   +|.+|...+.||||+|++.|+.++|++|+++| ++++.+|..|+||||+|+.+|+.+++++|+.
T Consensus        61 -------------~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          61 -------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -------------cccccccccccccccccccccccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                         78888743457999999999999999999999 9999999999999999999999999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.9e-24  Score=181.34  Aligned_cols=143  Identities=23%  Similarity=0.178  Sum_probs=117.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc------c
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL------L  160 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l------~  160 (399)
                      -||||.||+.|+.++|+        +|++.|++.+  .+..|+||||+|+..++.++++.++...........      +
T Consensus         3 ~t~L~~Aa~~g~~~~v~--------~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVR--------ILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHH--------HHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCCHHHHH--------HHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccc
Confidence            38999999999999999        8888888766  377899999999999999999999987765322211      1


Q ss_pred             ccCCCh-hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         161 YDSDTP-SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       161 ~a~~~~-~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                      ...... ......+...+.+.+.+|. .|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+|+.+|+.++++
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccceeeecccccCCccccccc-cCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            111111 1111455667788899998 7999999999999999999999999 999999999999999999999999998


Q ss_pred             HH
Q psy1036         240 PL  241 (399)
Q Consensus       240 ~L  241 (399)
                      +|
T Consensus       151 lL  152 (153)
T d1awcb_         151 IL  152 (153)
T ss_dssp             HH
T ss_pred             hC
Confidence            76

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.7e-24  Score=191.31  Aligned_cols=211  Identities=18%  Similarity=0.153  Sum_probs=133.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      ||||+||..|+.++|+.||...+       ...+. ++..|+||||+|+..|+.+++++|+++|++++.           
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~-------~~~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-----------   62 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKP-------SLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL-----------   62 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCG-------GGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG-----------
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCC-------Ccccc-cCCCCCCHHHHHHHcCCccccchhhhhhccccc-----------
Confidence            69999999999999995543332       33343 567899999999999999999999999987432           


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCC--cccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ--TSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~--~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                                  .+..+. .|.||+|+|+..+..++++.++..+ ..  ....+..+.||++.++..++.+++..|+...
T Consensus        63 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  128 (229)
T d1ixva_          63 ------------DDYPDD-SGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG  128 (229)
T ss_dssp             ------------GGCCCT-TSCCHHHHHHHHTCHHHHHHHHSSS-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ------------cccccc-ccccccccccccccccccccccccc-ccccccccccccccccccccccchhhhhhhhhhhc
Confidence                        123344 4666666666666666666666555 32  2334555666666666666666666666554


Q ss_pred             CchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCc
Q psy1036         246 TPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALP  325 (399)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~  325 (399)
                      .........+  ...++.+. ..+..++++.+                 ...+.                          
T Consensus       129 ~~~~~~~~~g--~t~l~~a~-~~~~~~~~~~L-----------------l~~~~--------------------------  162 (229)
T d1ixva_         129 ASVRIKDKFN--QIPLHRAA-SVGSLKLIELL-----------------CGLGK--------------------------  162 (229)
T ss_dssp             CCSCCCCTTS--CCHHHHHH-HHTCHHHHHHH-----------------HTTTC--------------------------
T ss_pred             ccccccCCCC--CCccchhh-hcccccccccc-----------------ccccc--------------------------
Confidence            2221111111  11111111 11111111110                 00000                          


Q ss_pred             ccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhc-CCCeeecCCCchhHHHHhhc
Q psy1036         326 QVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWD-NPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       326 ~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~-~~~~~~~s~d~~~~l~~~~~  388 (399)
                                 ......+..+.||||.|++.|+.++|+.|+.+ |+++++...+|.|+||.|++
T Consensus       163 -----------~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         163 -----------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             -----------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             -----------ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence                       01122234567999999999999999999975 99999999999999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-25  Score=199.33  Aligned_cols=183  Identities=16%  Similarity=0.084  Sum_probs=144.1

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      +|.||||+|+..|+.+++..|+    +++...|++++. ++..|+||||+||..|+.+++++|++.|++           
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li----~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-----------   64 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVI----RQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCD-----------   64 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCC----C-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHH----HHHHhCCCCccc-CCCCCCcccccccccccccccccccccccc-----------
Confidence            4788999999999987777555    244466777776 577899999999999999999999999887           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC-----CCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK-----IQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~-----a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                                     ++..|. .|+||||+|+..|+.+++++|+..+.     .........|.||||+|+..++.+++.
T Consensus        65 ---------------~~~~d~-~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  128 (221)
T d1iknd_          65 ---------------PELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE  128 (221)
T ss_dssp             ---------------SCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             ---------------cccccc-ccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhhee
Confidence                           788888 69999999999999999999998762     223444567899999999999999888


Q ss_pred             HHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccC
Q psy1036         240 PLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAA  319 (399)
Q Consensus       240 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~  319 (399)
                      +|+........                                                                     
T Consensus       129 ~l~~~~~~~~~---------------------------------------------------------------------  139 (221)
T d1iknd_         129 LLVSLGADVNA---------------------------------------------------------------------  139 (221)
T ss_dssp             HHHHHTCCTTC---------------------------------------------------------------------
T ss_pred             eecccCccccc---------------------------------------------------------------------
Confidence            77654210000                                                                     


Q ss_pred             CCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         320 DPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       320 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                                           ..+..+.|+||.|+..|+.++|+.|+..|+|+++.+.+|.|+||.|++.
T Consensus       140 ---------------------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         140 ---------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             ---------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             ---------------------ccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHC
Confidence                                 0011245789999999999999999999999999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.5e-26  Score=183.00  Aligned_cols=106  Identities=26%  Similarity=0.337  Sum_probs=100.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChh
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  167 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~  167 (399)
                      |||++||+.|++++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.|++              
T Consensus         4 tpL~~A~~~g~~~~v~--------~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d--------------   60 (118)
T d1myoa_           4 KEFMWALKNGDLDEVK--------DYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGAD--------------   60 (118)
T ss_dssp             HHHHHHHHTTCHHHHH--------HHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSSCT--------------
T ss_pred             hHHHHHHHCCCHHHHH--------HHHHhhhcccc-ccccccccccccccccccccccccccccce--------------
Confidence            7999999999999999        88899998888 477899999999999999999999999987              


Q ss_pred             HHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH
Q psy1036         168 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       168 ~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~  230 (399)
                                  +|.+|. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|.
T Consensus        61 ------------in~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          61 ------------INAPDK-HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             ------------TTCCSS-SCSCHHHHHHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             ------------eeeccc-ccccchhhhhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence                        899998 6999999999999999999999999 999999999999999984

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=182.00  Aligned_cols=147  Identities=21%  Similarity=0.224  Sum_probs=124.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc------cccc
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT------NLLY  161 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~------~l~~  161 (399)
                      ++||+||..|++++|+        +|+++|++++. .|..|+||||+|+ .|+.+++++|++.|++.+..      +++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~--------~Ll~~g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQLT--------SLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHHH--------HHTTSCCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHH--------HHHHCCCCcCc-cCCcccccccccc-cccccccccccccccccccccccCcccccc
Confidence            7999999999999999        88899999988 5778999999886 79999999999999985433      2333


Q ss_pred             cCCChhHH-HHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHH
Q psy1036         162 DSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGP  240 (399)
Q Consensus       162 a~~~~~~~-~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~  240 (399)
                      +....... ...++..+.+++..|. .|.+|||+|+..++.+++++|+++++.+++.+|.+|+||||+|+.+++.+++++
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~  151 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            22222222 1455567778899998 799999999999999999999999966899999999999999999999999999


Q ss_pred             HHhcc
Q psy1036         241 LSTKL  245 (399)
Q Consensus       241 Ll~~~  245 (399)
                      |++++
T Consensus       152 Ll~~G  156 (156)
T d1ihba_         152 MQANG  156 (156)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            99764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.4e-25  Score=214.69  Aligned_cols=131  Identities=14%  Similarity=0.067  Sum_probs=108.3

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcccccc
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  162 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a  162 (399)
                      +..|.|+||+||+.|+.++++.+-     .|++.|++++.. +..|+||||+||..||.++|++|++.|++         
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~-----~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~---------  151 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLC-----LLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPT---------  151 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHT-----TC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTT---------
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHH-----HHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            457889999999999998877433     688999998884 66899999999999999999999999987         


Q ss_pred             CCChhHHHHHHhhhccCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHhCCCCCc---ccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         163 SDTPSYIERSDILLDLYVNTPDK-ALNETPLHFAAKFGSVECVKRLIGCAKIQT---SVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       163 ~~~~~~~~~~~~~~~~~vn~~d~-~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~---~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                       ++..+. ..|+||||+||..|+.++|++|++.| ++.   +..+.+|.||++.|+.+|+.+++
T Consensus       152 -----------------~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~t~l~~A~~~g~~~iv  213 (346)
T d2ajaa1         152 -----------------EIMAMIQAENYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVI  213 (346)
T ss_dssp             -----------------THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             -----------------ccccccccCCCChhHHHHHHhhHHHHHHHHHcC-CcccccccccCCCcchhhHHhhcCHHHHH
Confidence                             555442 14999999999999999999999999 554   44556778899999999999999


Q ss_pred             HHHHhccC
Q psy1036         239 GPLSTKLT  246 (399)
Q Consensus       239 ~~Ll~~~~  246 (399)
                      ++|++...
T Consensus       214 ~~Ll~~ga  221 (346)
T d2ajaa1         214 NFLLDCPV  221 (346)
T ss_dssp             HHHTTSHH
T ss_pred             HHHHhCCC
Confidence            99998763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=193.00  Aligned_cols=152  Identities=20%  Similarity=0.172  Sum_probs=116.8

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc----
Q psy1036          84 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL----  159 (399)
Q Consensus        84 ~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l----  159 (399)
                      .++.|.||.||+.|++++|+        +|+++|++++...+..|+||||+|+..|+.+++++|++.+........    
T Consensus         3 ~~~~~~L~~Ai~~~~~e~vk--------~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~   74 (285)
T d1wdya_           3 VEDNHLLIKAVQNEDVDLVQ--------QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH--------HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCcHHHHHHHHcCCHHHHH--------HHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccch
Confidence            35779999999999999999        888999998876677899999999999999999999999887433221    


Q ss_pred             --cccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCccc----------CCCCCCcHH
Q psy1036         160 --LYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV----------RNKEGKTPL  226 (399)
Q Consensus       160 --~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~----------~d~~G~TpL  226 (399)
                        +++........ ........+....+. .|.|+|++|+..|+..+++.++... .+++.          .+..|.|||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             hhHHHhhcCCccccchhhhhccccccccc-CCCchhHHHHHhcchhhhhhhhhhc-ccccccccchhhhhhhcccCchHH
Confidence              22211111111 222333333445566 6999999999999999999999876 55443          345699999


Q ss_pred             HHHHhCCCHHHHHHHHhcc
Q psy1036         227 DVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       227 ~~A~~~g~~~iv~~Ll~~~  245 (399)
                      |+|+.+|+.+++++|++..
T Consensus       153 ~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_         153 MDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.7e-24  Score=195.38  Aligned_cols=186  Identities=17%  Similarity=0.126  Sum_probs=125.5

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc-
Q psy1036          80 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN-  158 (399)
Q Consensus        80 ~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~-  158 (399)
                      ...+..|.||||+||..|+.++|+        +|++.|++++. .+..|+||||+|+..|+.+++++|++.+....... 
T Consensus        39 ~~~~~~g~TpL~~A~~~g~~~iv~--------~Ll~~ga~i~~-~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~  109 (255)
T d1oy3d_          39 DLQNDLGQTALHLAAILGEASTVE--------KLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS  109 (255)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHH--------HHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-
T ss_pred             cCcCCCCCCccchHHhhccccccc--------ccccccccccc-cccccchhhhhhhccCchHHHHHHHhhccchhcccc
Confidence            345678899999999999999999        88899999888 57789999999999999999999998765422110 


Q ss_pred             -ccccC---CChhH----------------HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCccc-
Q psy1036         159 -LLYDS---DTPSY----------------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV-  217 (399)
Q Consensus       159 -l~~a~---~~~~~----------------~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~-  217 (399)
                       .....   .....                ........+.+++.+|. .|+||||+||..|+.++|++|++.+ ++.+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~-~~~~~~  187 (255)
T d1oy3d_         110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKP  187 (255)
T ss_dssp             ----------------------------------CCCGGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC
T ss_pred             hhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccc-cCcccccccccccccccccchhccc-cccccc
Confidence             00000   00000                00112223355677777 5888888888888888888888888 55554 


Q ss_pred             CCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHH
Q psy1036         218 RNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKK  276 (399)
Q Consensus       218 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (399)
                      .+..|+||||+|+..|+.+++++|++.+.......+.+.+....++.....+.++++..
T Consensus       188 ~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            45678888888888888888888888764443333333333333444455555555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=176.84  Aligned_cols=121  Identities=23%  Similarity=0.221  Sum_probs=110.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCCh
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  166 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~  166 (399)
                      ++.|+.||..|++++|+        +|+++|++++. ++..|+||||+||..|+.+++++|++.|++             
T Consensus         2 l~lL~~A~~~G~~~~v~--------~Ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-------------   59 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQ--------RIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFGVN-------------   59 (130)
T ss_dssp             HHHHHHHHHHTCHHHHH--------HHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------------
T ss_pred             hHHHHHHHHcCCHHHHH--------HHHHcCCCccc-cccccccccccccccccccccccccccccc-------------
Confidence            47899999999999999        88899999988 577899999999999999999999999887             


Q ss_pred             hHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCcHHHHH--HhCCCHHHHHHHHh
Q psy1036         167 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDVC--FKMPSVDSMGPLST  243 (399)
Q Consensus       167 ~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d-~~G~TpL~~A--~~~g~~~iv~~Ll~  243 (399)
                                   +|.+|. .|+||||+|+.+|+.++|++|+++| ++++.++ ..|+||++++  +..|+.+++++|+.
T Consensus        60 -------------~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          60 -------------VNAADS-DGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             -------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             -------------cccccc-cCcccccccchhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence                         789998 6999999999999999999999999 9999877 4689988776  57789999999986


Q ss_pred             c
Q psy1036         244 K  244 (399)
Q Consensus       244 ~  244 (399)
                      .
T Consensus       125 ~  125 (130)
T d1ycsb1         125 V  125 (130)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=177.80  Aligned_cols=144  Identities=22%  Similarity=0.230  Sum_probs=118.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhCChhhhhC-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCc------ccc
Q psy1036          88 VKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT------NLL  160 (399)
Q Consensus        88 T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~-g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~------~l~  160 (399)
                      +.||.||..|++++|+        +|++. +.+++. .|..|+||||+|+ .|+.+++++|++.+.+.+..      +++
T Consensus         4 ~~L~~Aa~~g~~~~vk--------~lL~~~~~~~n~-~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVR--------RLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHH--------HHHHTTCCCTTC-CCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHHH--------HHHHhCCCCCCc-cCCCCCccccccc-ccccccccccccccccccccccccccccc
Confidence            4699999999999999        55554 567776 5778999999987 58999999999999885433      333


Q ss_pred             ccCCChhH-HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         161 YDSDTPSY-IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       161 ~a~~~~~~-~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                      ++...... .....+..++++|.+|. .|+||||+||..|+.+++++|+ .| ++++.+|.+|+||||+|+.+|+.++++
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cccccccccccccccccccccccccC-CCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            33333322 22556667888999998 6999999999999999999888 57 899999999999999999999999999


Q ss_pred             HHHhc
Q psy1036         240 PLSTK  244 (399)
Q Consensus       240 ~Ll~~  244 (399)
                      +|++.
T Consensus       151 ~Ll~h  155 (156)
T d1bd8a_         151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            99875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=186.47  Aligned_cols=157  Identities=17%  Similarity=0.155  Sum_probs=131.7

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCC----
Q psy1036          79 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP----  154 (399)
Q Consensus        79 ~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~----  154 (399)
                      +...+..|+||||+||..|+.++++        +|++.|++++. .+..|+||||+|+..|+.++++.|+..+...    
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~--------~L~~~g~d~~~-~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAE--------ALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS  102 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHH--------CCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred             cccCCCCCCcccccccccccccccc--------ccccccccccc-cccccccccccccccccccccchhhhhcccccccc
Confidence            4445778999999999999999999        99999999888 5788999999999999999999999987652    


Q ss_pred             --------CCccccccCCChhHHH-HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcH
Q psy1036         155 --------AFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP  225 (399)
Q Consensus       155 --------~~~~l~~a~~~~~~~~-~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~Tp  225 (399)
                              +.+++++++..+.... ..+...+..++..+...|+||||+|++.|+.++|++|+++| +|++.+|.+|+||
T Consensus       103 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tp  181 (221)
T d1iknd_         103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSP  181 (221)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCG
T ss_pred             cccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCH
Confidence                    2334444433322222 45556677788776546999999999999999999999999 9999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHhcc
Q psy1036         226 LDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       226 L~~A~~~g~~~iv~~Ll~~~  245 (399)
                      ||+|+.+++.+++++|++..
T Consensus       182 l~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         182 YQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             GGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-23  Score=180.68  Aligned_cols=215  Identities=21%  Similarity=0.231  Sum_probs=140.5

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCC
Q psy1036          85 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  164 (399)
Q Consensus        85 ~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~  164 (399)
                      +|.||||+||..|+.++|+.||+    .+++.|++++. .+..|+||||+||..|+.+++++|+++|++           
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~----~~~~~g~~in~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-----------   65 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVN----LFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----------   65 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHH----HHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHH----HHHHCCCCCCc-cCCCCCccceehhccccccccccccccccc-----------
Confidence            57788888888888888886652    34457777776 466788888888888888888888888776           


Q ss_pred             ChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCC---CCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         165 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK---IQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       165 ~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~---a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                                     ++..+. .|.++++.|...++.++++.+.....   ...+.....+.+||+.+...........|
T Consensus        66 ---------------~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  129 (228)
T d1k1aa_          66 ---------------PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL  129 (228)
T ss_dssp             ---------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ---------------cccccc-ccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhh
Confidence                           566666 57788888888888777776665431   22344556667788887777777777776


Q ss_pred             HhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCC
Q psy1036         242 STKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP  321 (399)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~  321 (399)
                      ..............+. ..++. .......                 .........|                       
T Consensus       130 ~~~~~~~~~~~~~~~~-~~l~~-a~~~~~~-----------------~~~~~~~~~~-----------------------  167 (228)
T d1k1aa_         130 LERGADIDAVDIKSGR-SPLIH-AVENNSL-----------------SMVQLLLQHG-----------------------  167 (228)
T ss_dssp             HHTTCCTTCCCTTTCC-CHHHH-HHHTTCH-----------------HHHHHHHHTT-----------------------
T ss_pred             hccccccccccccchh-hHHHH-HHHhhhh-----------------hhhhhhhhhc-----------------------
Confidence            6554322111111111 00100 0000000                 0011111111                       


Q ss_pred             CCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhc
Q psy1036         322 SALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCS  388 (399)
Q Consensus       322 ~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~  388 (399)
                                     ......+..+.|+||+|+..|+.++|+.|+..|+|+++.+.+|.|+||.|++
T Consensus       168 ---------------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         168 ---------------ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             ---------------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             ---------------cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence                           1122334456799999999999999999999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=4.2e-23  Score=181.72  Aligned_cols=130  Identities=20%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCC----------------------------------------------------
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNP----------------------------------------------------  110 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p----------------------------------------------------  110 (399)
                      +.+|.||||+||..|+.++|+.||..++                                                    
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4678999999999999999997665422                                                    


Q ss_pred             -------hhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCC
Q psy1036         111 -------RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTP  183 (399)
Q Consensus       111 -------~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~  183 (399)
                             +.|+..+.+.+. .+..|+||||+|+..|...+++.|++.+.                          ++|..
T Consensus       100 ~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~~~~--------------------------~~~~~  152 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHA--------------------------NRDAQ  152 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTC--------------------------CTTCC
T ss_pred             ccchhhhhhhhhhcccccc-cCCCCCCcchhhcccCcceeeeeeccccc--------------------------ccccc
Confidence                   334444444333 23344555555555555555555555544                          48999


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q psy1036         184 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPL  241 (399)
Q Consensus       184 d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~L  241 (399)
                      |. .|.||||+||..|+.++|++||++| ++++.+|..|+||||+|+++|+.++|++|
T Consensus       153 d~-~g~TpL~~A~~~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 DD-KDETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cc-ccccccchhccccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            98 6999999999999999999999999 99999999999999999999999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.6e-22  Score=170.63  Aligned_cols=123  Identities=20%  Similarity=0.308  Sum_probs=106.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc-----cCCCCCCcHHHHHHHc---CCHHHHHHHHhccCCCCCcc
Q psy1036          87 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI-----LHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNPAFTN  158 (399)
Q Consensus        87 ~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~-----~~d~~g~T~LH~Aa~~---g~~~iv~~Ll~~ga~~~~~~  158 (399)
                      +..|+.|++.+++..+.+++        ..|.+.+.     ..+..|+||||+|+..   |+.++|++|+++|++     
T Consensus         7 l~~L~~Av~~~dl~~l~~~~--------~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----   73 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAY--------ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----   73 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH--------HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----
T ss_pred             HHHHHHHHHhCCHHHHHHHH--------HcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-----
Confidence            45678999999999999555        44433221     1245689999999974   688999999999987     


Q ss_pred             ccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q psy1036         159 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSM  238 (399)
Q Consensus       159 l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv  238 (399)
                                           +|.+|. .|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+|+++|+.+++
T Consensus        74 ---------------------in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~  130 (154)
T d1dcqa1          74 ---------------------LDKQTG-KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCE  130 (154)
T ss_dssp             ---------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ---------------------hhhhhh-hhccccccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHH
Confidence                                 899998 6999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHhcc
Q psy1036         239 GPLSTKL  245 (399)
Q Consensus       239 ~~Ll~~~  245 (399)
                      ++|++..
T Consensus       131 ~~L~~~~  137 (154)
T d1dcqa1         131 ELLTQAL  137 (154)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-22  Score=194.67  Aligned_cols=205  Identities=20%  Similarity=0.202  Sum_probs=138.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy1036         129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI  208 (399)
Q Consensus       129 ~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL  208 (399)
                      .||||+||..|+.++|++|++.|++                          +|..|. .|+||||+||..|+.++|++||
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~--------------------------in~~d~-~g~TpL~~A~~~g~~~iv~~Ll   53 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS--------------------------PNVSNV-KVETPLHMAARAGHTEVAKYLL   53 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC--------------------------SCCSSS-CCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHH
Confidence            4899999999999999999999987                          899998 6999999999999999999999


Q ss_pred             hCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhcccccc----
Q psy1036         209 GCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKS----  284 (399)
Q Consensus       209 ~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~----  284 (399)
                      ++| ++++.+|.+|+||||+|+..|+.+++++|+............................. ......+.....    
T Consensus        54 ~~g-adi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  131 (408)
T d1n11a_          54 QNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV-LALLEKEASQACMTKK  131 (408)
T ss_dssp             HHT-CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHH-HHHHHTTCCSCCCCTT
T ss_pred             HCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccc-cccccccccccccccc
Confidence            999 89999999999999999999999999999987632211111100000000000000110 111111110000    


Q ss_pred             -ccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHH
Q psy1036         285 -FRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVR  363 (399)
Q Consensus       285 -~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~  363 (399)
                       +.....+..   .+                         ...+... ..+.+......+..+.++||.|++.|+.++++
T Consensus       132 ~~~~l~~a~~---~~-------------------------~~~~v~~-ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         132 GFTPLHVAAK---YG-------------------------KVRVAEL-LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             SCCHHHHHHH---TT-------------------------CHHHHHH-HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHH---cC-------------------------CHHHHHH-HHHcCCCCCcCCCcCchHHHHHHHcCCHHHHH
Confidence             000000000   00                         0111111 11122223344456678999999999999999


Q ss_pred             HHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         364 KLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       364 ~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                      .|+..+++++..+.++.|+||.+++.+.
T Consensus       183 ~Ll~~g~~~~~~~~~~~t~l~~~~~~~~  210 (408)
T d1n11a_         183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQ  210 (408)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             HHHhcCCcccccCCCCCCcchhhhccch
Confidence            9999999999999999999999887665

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=4.8e-22  Score=183.90  Aligned_cols=200  Identities=14%  Similarity=0.057  Sum_probs=142.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                      |.|+||+||..|+.++|++||++|++                          +|..|. .|+||||+|+..|+.++|++|
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gad--------------------------vn~~d~-~G~T~L~~A~~~g~~eiv~~L   92 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGAD--------------------------INYANV-DGLTALHQACIDDNVDMVKFL   92 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCC--------------------------TTCBCT-TCCBHHHHHHHTTCHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCC--------------------------CCccCC-CCCcHHHHHHhcCCceeeeee
Confidence            45999999999999999999999998                          899998 699999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHh---hcccccc
Q psy1036         208 IGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKN---KKIRFKS  284 (399)
Q Consensus       208 L~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---k~~r~~~  284 (399)
                      +++| ++.+..+..+.|||++|+..++.++++.|++...........+.....   +.........++..   .+.....
T Consensus        93 l~~~-~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~ll~~~~~~~~~  168 (291)
T d1s70b_          93 VENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD---IAEEEAMEELLQNEVNRQGVDIEA  168 (291)
T ss_dssp             HHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH---HCCSHHHHHHHHHHHHHHTCCHHH
T ss_pred             cccc-cccccccccccccccccccccccchhhcccccCcccccccccCccccc---cccccccchhcccccccccccccc
Confidence            9999 899999999999999999999999999999887554443333222222   22233333333322   1111100


Q ss_pred             ccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHH
Q psy1036         285 FRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRK  364 (399)
Q Consensus       285 ~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~  364 (399)
                      -  ...........                            .... ..............+.|+||.|++.|+.++|+.
T Consensus       169 ~--~~~~~~~~~~~----------------------------~~~~-~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  217 (291)
T d1s70b_         169 A--RKEEERIMLRD----------------------------ARQW-LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL  217 (291)
T ss_dssp             H--HHHHHHHHHHH----------------------------HHHH-HHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             c--ccccccccccc----------------------------chhh-hcccccccccccCCCCChhhHHHHcCChhhhcc
Confidence            0  00000000000                            0000 000011122334456799999999999999999


Q ss_pred             HhhcCCCeeecCCCchhHHHHhhcc
Q psy1036         365 LVWDNPRYLVSSGDFPTILHVVCSR  389 (399)
Q Consensus       365 lv~~~~~~~~~s~d~~~~l~~~~~~  389 (399)
                      |+..|+++++...+|-|+||.|++.
T Consensus       218 Ll~~g~din~~~~~g~TpL~~A~~~  242 (291)
T d1s70b_         218 LIQARYDVNIKDYDGWTPLHAAAHW  242 (291)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cccceecccccccCCCCHHHHHHHc
Confidence            9999999999999999999999974

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=7.4e-21  Score=169.52  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=129.7

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcc--cCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCC
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI--LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA  155 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~--~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~  155 (399)
                      .....+.+|+||||+||..|+.++|+        +|++.|++++.  ..+..|++|+|+++..+..++++.++..+....
T Consensus        26 ~~~~~d~~G~TpL~~A~~~g~~~iv~--------~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (229)
T d1ixva_          26 LLLQKDQDGRIPLHWSVSFQAHEITS--------FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD   97 (229)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHH--------HHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCC
T ss_pred             cccccCCCCCCHHHHHHHcCCccccc--------hhhhhhcccccccccccccccccccccccccccccccccccccccc
Confidence            44556789999999999999999999        88888887764  346679999999999999999999998887532


Q ss_pred             C--------ccccccCCChhH-HHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHH
Q psy1036         156 F--------TNLLYDSDTPSY-IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL  226 (399)
Q Consensus       156 ~--------~~l~~a~~~~~~-~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL  226 (399)
                      .        ++++........ +...++..+...+.+|. .|+||||+|+..|+.+++++|++.+..+++.+|.+|+|||
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpL  176 (229)
T d1ixva_          98 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL  176 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccccCC-CCCCccchhhhcccccccccccccccccccccccccCCch
Confidence            2        222222222211 12455667777888898 6999999999999999999999998788999999999999


Q ss_pred             HHHHhCCCHHHHHHHHhc
Q psy1036         227 DVCFKMPSVDSMGPLSTK  244 (399)
Q Consensus       227 ~~A~~~g~~~iv~~Ll~~  244 (399)
                      |+|+.+|+.+++++|+++
T Consensus       177 h~A~~~~~~~~v~~Ll~~  194 (229)
T d1ixva_         177 FHALAEGHGDAAVLLVEK  194 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             hhhcccccHHHHHHHHHh
Confidence            999999999999999975

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.9e-20  Score=169.87  Aligned_cols=122  Identities=19%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCCCcc------c---cccCCChhHHH--HHHhhhccCCCCCCCCCCchHH
Q psy1036         125 EGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTN------L---LYDSDTPSYIE--RSDILLDLYVNTPDKALNETPL  192 (399)
Q Consensus       125 d~~g~T~LH~Aa~~g~~~iv~~Ll~~-ga~~~~~~------l---~~a~~~~~~~~--~~~~~~~~~vn~~d~~~G~TpL  192 (399)
                      ...|.||||+|+..|+.+++++|+++ |++.+...      .   ...+.......  ..++..++++|.+|. .|+|||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~-~g~t~L  223 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPL  223 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC-CCCCcc
Confidence            33588999999999999999999975 55543321      1   12223333322  455667889999998 699999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCc
Q psy1036         193 HFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTP  247 (399)
Q Consensus       193 h~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~  247 (399)
                      |+|+..|+.++|++||+.++++++.+|.+|.||||+|+++|+.+++++|++.+..
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999864499999999999999999999999999999998843

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=160.16  Aligned_cols=90  Identities=18%  Similarity=0.208  Sum_probs=84.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy1036         130 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  209 (399)
Q Consensus       130 T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~  209 (399)
                      +|||+||..|+.++|++|+++|++                          +|.+|. .|+||||+|+ .|+.+++++|++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d--------------------------~n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~   54 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN--------------------------VNAQNG-FGRTALQVMK-LGNPEIARRLLL   54 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--------------------------TTCCCT-TSCCHHHHCC-SSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--------------------------cCccCC-cccccccccc-cccccccccccc
Confidence            799999999999999999999998                          889998 6999999886 799999999999


Q ss_pred             CCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCch
Q psy1036         210 CAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPT  248 (399)
Q Consensus       210 ~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~  248 (399)
                      +| ++++.++..|.+|++.++..++.+.+..|+......
T Consensus        55 ~~-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~   92 (156)
T d1ihba_          55 RG-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV   92 (156)
T ss_dssp             TT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             cc-cccccccccCcccccccccccccccccccccccccc
Confidence            99 999999999999999999999999999999876543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.6e-21  Score=182.40  Aligned_cols=137  Identities=23%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCC-------HHHHHHHHhccC---
Q psy1036          83 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN-------PAMTEMLLEIIG---  152 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~-------~~iv~~Ll~~ga---  152 (399)
                      +..|.||||+||..|+.++|+        +|++.|++++. +|..|+||||+||..++       .+++++|.....   
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~--------~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVK--------HLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHH--------HHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCCCCHHHHHHHcCCHHHHH--------HHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            678999999999999999999        88899999987 57789999999998775       355666554332   


Q ss_pred             CCCCccccccCCChh----------HHH----------------------------------------HHHhhhccCCCC
Q psy1036         153 NPAFTNLLYDSDTPS----------YIE----------------------------------------RSDILLDLYVNT  182 (399)
Q Consensus       153 ~~~~~~l~~a~~~~~----------~~~----------------------------------------~~~~~~~~~vn~  182 (399)
                      ..+.+++|+++....          ...                                        .+....+..+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            234455543321000          000                                        011112233799


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHH
Q psy1036         183 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCF  230 (399)
Q Consensus       183 ~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~  230 (399)
                      +|. .|+||||+||+.|+.++|++||++| ++++++|+.|+|||++|+
T Consensus       255 ~D~-~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDS-NGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCT-TSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            999 7999999999999999999999999 999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.6e-21  Score=179.21  Aligned_cols=196  Identities=14%  Similarity=0.031  Sum_probs=118.0

Q ss_pred             hCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHH
Q psy1036         115 SSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHF  194 (399)
Q Consensus       115 ~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~  194 (399)
                      ..+.+++...|..|+||||+||..|+.++|++|+++|++                          ++.+|. .|+||||+
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad--------------------------~~~~d~-~G~TpL~~  146 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--------------------------RLYGDN-MGESCLVK  146 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTBCCT-TCCCHHHH
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--------------------------CCcCCc-ccccHHHH
Confidence            345555553367899999999999999999999999998                          789998 69999999


Q ss_pred             HHHcCCH-------HHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC----HHHHHHHHhccCchhhcccCCCCccchhh
Q psy1036         195 AAKFGSV-------ECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS----VDSMGPLSTKLTPTKVATKSEGTEEGERV  263 (399)
Q Consensus       195 Aa~~g~~-------~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  263 (399)
                      ||..++.       +++++|.    ..++.+|..|+||||+++..+.    ..++++.++.+                  
T Consensus       147 A~~~~~~~~~~~~~~ll~~l~----~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~------------------  204 (301)
T d1sw6a_         147 AVKSVNNYDSGTFEALLDYLY----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL------------------  204 (301)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHG----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH------------------
T ss_pred             hhhcccchhhhhHHHHHHHHh----hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHH------------------
Confidence            9987752       3444443    4567789999999998876433    33333222211                  


Q ss_pred             hhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCc
Q psy1036         264 FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLK  343 (399)
Q Consensus       264 ~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  343 (399)
                             +..+.......................+.            .......     ...+..++.    ......+
T Consensus       205 -------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~----~~in~~D  256 (301)
T d1sw6a_         205 -------MGWIVKKQNRPIQSGTNEKESKPNDKNGE------------RKDSILE-----NLDLKWIIA----NMLNAQD  256 (301)
T ss_dssp             -------HHHHHHGGGCCEEEC----------------------------CHHHH-----HCSHHHHHH----HTTTCCC
T ss_pred             -------HHHHHhcCCcchhcccccccchhHHHHhc------------chHHHHH-----HHhhHHHHh----cCccCCC
Confidence                   01111100000000000000000000000            0000000     000000000    0012234


Q ss_pred             hHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhh
Q psy1036         344 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVC  387 (399)
Q Consensus       344 ~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~  387 (399)
                      ..+.||||+|+++||.++|+.|+..||++++...+|.|+|+.|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            56789999999999999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=5.3e-20  Score=161.50  Aligned_cols=192  Identities=14%  Similarity=0.072  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCcc------ccccCCChhHHH--
Q psy1036          99 LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN------LLYDSDTPSYIE--  170 (399)
Q Consensus        99 ~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~------l~~a~~~~~~~~--  170 (399)
                      .++|+        +|+++|++++...|..|.||||+||..|+.+++++|++.|++++...      .+..........  
T Consensus         2 ~~~v~--------~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           2 AQVIS--------DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHH--------HHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence            46788        88899988876456689999999999999999999999998733221      111111111110  


Q ss_pred             HHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhh
Q psy1036         171 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKV  250 (399)
Q Consensus       171 ~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~  250 (399)
                      ............... .|.++.+.+.......+.+.|+..+ ++++.++..|+|||++++.++..+++..++....    
T Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~----  147 (209)
T d1ot8a_          74 ILLRNRATNLNARMH-DGTTPLILAARLAIEGMVEDLITAD-ADINAADNSGKTALHWAAAVNNTEAVNILLMHHA----  147 (209)
T ss_dssp             HHHTCTTCCTTCCCT-TCCCHHHHHHHTTCTTHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----
T ss_pred             ccccccccccccccc-cccccccccccccchhhhhhhhhhc-ccccccCCCCCCcchhhcccCcceeeeeeccccc----
Confidence            111111111112222 3555555555555555555555555 5555566666666666666555555555443321    


Q ss_pred             cccCCCCccchhhhhchHHHHHHHHHhhccccccccChHHHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccc
Q psy1036         251 ATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSL  330 (399)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~  330 (399)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (209)
T d1ot8a_         148 --------------------------------------------------------------------------------  147 (209)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcCCCeeecCCCchhHHHHhhcccc
Q psy1036         331 AAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHVVCSRCS  391 (399)
Q Consensus       331 ~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~~~~~~~s~d~~~~l~~~~~~~~  391 (399)
                             .....+..+.||||.|+..|+.++|+.|+..||++++.+.+|.|+||.|++..+
T Consensus       148 -------~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         148 -------NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             -------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -------cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence                   001112345688999999999999999999999999999999999999998764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3.5e-20  Score=148.85  Aligned_cols=99  Identities=19%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy1036         129 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI  208 (399)
Q Consensus       129 ~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL  208 (399)
                      .|||+||++.|+.++|++|++.|++                          +|.+|. .|+||||+|+..|+.+++++|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d--------------------------~n~~~~-~g~t~lh~A~~~~~~~~~~~ll   55 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED--------------------------VNRTLE-GGRKPLHYAADCGQLEILEFLL   55 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC--------------------------CCCCSS-SSCCTTHHHHHHSTTTHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc--------------------------cccccc-cccccccccccccccccccccc
Confidence            3799999999999999999999987                          789998 6999999999999999999999


Q ss_pred             hCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCC
Q psy1036         209 GCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSE  255 (399)
Q Consensus       209 ~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  255 (399)
                      ++| ++++.+|..|+||||+|+.+|+.+++++|++.+.......+++
T Consensus        56 ~~g-~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G  101 (118)
T d1myoa_          56 LKG-ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG  101 (118)
T ss_dssp             HSS-CTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSST
T ss_pred             ccc-ceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCC
Confidence            999 9999999999999999999999999999999886544444443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=163.10  Aligned_cols=151  Identities=21%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCcccCCCCCC----------------------------
Q psy1036          78 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRY----------------------------  129 (399)
Q Consensus        78 ~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~----------------------------  129 (399)
                      .....+..|+||||+||..|+.++|+.|++        .|++.+.. ...|.                            
T Consensus        32 ~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~--------~ga~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  102 (228)
T d1k1aa_          32 ELDIYNNLRQTPLHLAVITTLPSVVRLLVT--------AGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD  102 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC
T ss_pred             CCCccCCCCCccceehhccccccccccccc--------cccccccc-ccccccccccccccccccchhhhhhcccccccc
Confidence            345567889999999999999999995554        44333331 22333                            


Q ss_pred             ---------cHHHHHHHcCCHHHHHHHHhccCC-------CCCccccccCCChhH-HHHHHhhhccCCCCCCCCCCchHH
Q psy1036         130 ---------NALHVSTKAVNPAMTEMLLEIIGN-------PAFTNLLYDSDTPSY-IERSDILLDLYVNTPDKALNETPL  192 (399)
Q Consensus       130 ---------T~LH~Aa~~g~~~iv~~Ll~~ga~-------~~~~~l~~a~~~~~~-~~~~~~~~~~~vn~~d~~~G~TpL  192 (399)
                               ++||.+.........+.|.....+       .+.++++.++..... .....+..+..++.+|. .|.|||
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~-~g~t~L  181 (228)
T d1k1aa_         103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSAL  181 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT-TSCBHH
T ss_pred             ccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccc-cCcchH
Confidence                     444444444555555555544443       122333333322221 12444455666788887 689999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q psy1036         193 HFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPSVDSMG  239 (399)
Q Consensus       193 h~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~  239 (399)
                      |+|+..|+.++|++|+++| ++++.+|.+|+||||+|+++|+.++++
T Consensus       182 ~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         182 HSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999998 889999999999999998888888774

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.81  E-value=8.6e-22  Score=188.01  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=96.1

Q ss_pred             CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhhCChhhhhCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Q psy1036          76 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-HEGCRYNALHVSTKAVNPAMTEMLLEIIGNP  154 (399)
Q Consensus        76 ~~~~~~~~~~~~T~Lh~Aa~~G~~~~v~~Ll~~~p~~Ll~~g~~~~~~-~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~  154 (399)
                      .......+..|+||||+||+.|++++|+        +|++.|++++.. .+..|+||||+||..||.+||++|++.|++.
T Consensus       116 ~~~in~~~~~g~taL~~Aa~~G~~~~v~--------~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         116 DEIVKVIQAENYQAFRLAAENGHLHVLN--------RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHH--------HHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHH--------HHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            3455667889999999999999999999        888999887663 2335899999999999999999999998751


Q ss_pred             CCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCcHHHHHHhCCC
Q psy1036         155 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDVCFKMPS  234 (399)
Q Consensus       155 ~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~~~d~~G~TpL~~A~~~g~  234 (399)
                      .                       ..+..+. .|.||||+|+..|+.++|++|++.| ++++.       |.+.+...++
T Consensus       188 ~-----------------------~~~~~~~-~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~~~-------~~~~~~~~~~  235 (346)
T d2ajaa1         188 A-----------------------TAMIQAE-NYYAFRWAAVGRGHHNVINFLLDCP-VMLAY-------AEIHEFEYGE  235 (346)
T ss_dssp             H-----------------------HHHHHHH-HHHHHHHHHSTTCCHHHHHHHTTSH-HHHHH-------HHHCTTTTTT
T ss_pred             c-----------------------ccccccC-CCcchhhHHhhcCHHHHHHHHHhCC-CCcch-------HHHHHHHcCc
Confidence            1                       0233444 4788889999999999999999999 77653       4444555555


Q ss_pred             HHHHHHHH
Q psy1036         235 VDSMGPLS  242 (399)
Q Consensus       235 ~~iv~~Ll  242 (399)
                      ..+...++
T Consensus       236 ~~~~~~~~  243 (346)
T d2ajaa1         236 KYVNPFIA  243 (346)
T ss_dssp             TTHHHHHH
T ss_pred             HhhhHHHH
Confidence            55544443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-20  Score=152.81  Aligned_cols=91  Identities=20%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy1036         130 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  209 (399)
Q Consensus       130 T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~  209 (399)
                      ++||+||..|+.++|++|+++|++                          +|.+|. .|+||||+|+..|+.+++++|++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--------------------------~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~   55 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--------------------------PSLPND-EGITALHNAVCAGHTEIVKFLVQ   55 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--------------------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--------------------------cccccc-ccccccccccccccccccccccc
Confidence            589999999999999999999988                          899998 69999999999999999999999


Q ss_pred             CCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCch
Q psy1036         210 CAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPT  248 (399)
Q Consensus       210 ~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~  248 (399)
                      +| ++++.+|.+|+||||+|+.+|+.+++++|++++...
T Consensus        56 ~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          56 FG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             HT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cc-cccccccccCcccccccchhhHHHHHHHHHHcCCCc
Confidence            99 999999999999999999999999999999987543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6e-19  Score=148.25  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcc-CCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy1036         130 NALHVSTKAVNPAMTEMLLEII-GNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI  208 (399)
Q Consensus       130 T~LH~Aa~~g~~~iv~~Ll~~g-a~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL  208 (399)
                      +.||.||..|+.++|+.||+.+ ++                          +|..|. .|+||||+|+ .|+.++|++|+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~--------------------------~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll   55 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH--------------------------PDALNR-FGKTALQVMM-FGSTAIALELL   55 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC--------------------------TTCCCT-TSCCHHHHSC-TTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC--------------------------CCccCC-CCCccccccc-ccccccccccc
Confidence            4699999999999999999864 44                          788998 6999999987 58999999999


Q ss_pred             hCCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhcc
Q psy1036         209 GCAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKL  245 (399)
Q Consensus       209 ~~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  245 (399)
                      +++ .+++..+..|.+|+++++..++.++++.++++.
T Consensus        56 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~   91 (156)
T d1bd8a_          56 KQG-ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG   91 (156)
T ss_dssp             HTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccc-ccccccccccccccccccccccccccccccccc
Confidence            999 899999999999999999999999999888754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-18  Score=145.33  Aligned_cols=141  Identities=17%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy1036         130 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  209 (399)
Q Consensus       130 T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~  209 (399)
                      ||||.||+.|+.++|++||++|++                          ++ .|. .|+||||+|+..++.++++.++.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~--------------------------~~-~~~-~g~t~L~~a~~~~~~~~~~~~~~   55 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP--------------------------FT-TDW-LGTSPLHLAAQYGHFSTTEVLLR   55 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC--------------------------CC-CCT-TCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC--------------------------cc-ccc-CCCcccccccccccccccccccc
Confidence            799999999999999999998886                          44 566 58999999999999999998888


Q ss_pred             CCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHHhccCchhhcccCCCCccchhhhhchHHHHHHHHHhhccccccccChH
Q psy1036         210 CAKIQTSVRNKEGKTPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGERVFDNKEEALLFIKKNKKIRFKSFRNFQ  289 (399)
Q Consensus       210 ~g~a~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~r~~~~~~~~  289 (399)
                      .. ......+..+.++++.++...+.++++++......                                          
T Consensus        56 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------------------   92 (153)
T d1awcb_          56 AG-VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD------------------------------------------   92 (153)
T ss_dssp             TT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------------------------------------
T ss_pred             cc-ccccccccccccccccccccccceeeecccccCCc------------------------------------------
Confidence            88 66777788888899988888888887766543200                                          


Q ss_pred             HHHHHHhcCCccCCCCCCCCCCCCCccccCCCCCCcccccccccCCCCCCCCCchHHHHHHHHHHhhcCHHHHHHHhhcC
Q psy1036         290 DAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQVSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDN  369 (399)
Q Consensus       290 ~a~~~a~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~t~l~~aiq~G~~~~v~~lv~~~  369 (399)
                                                                       .......+.|+||.|++.|+.++|+.|+..|
T Consensus        93 -------------------------------------------------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g  123 (153)
T d1awcb_          93 -------------------------------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             -------------------------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -------------------------------------------------cccccccCchHHHhhhhcchhheeeeccccc
Confidence                                                             0011234568899999999999999999999


Q ss_pred             CCeeecCCCchhHHHHhhccc
Q psy1036         370 PRYLVSSGDFPTILHVVCSRC  390 (399)
Q Consensus       370 ~~~~~~s~d~~~~l~~~~~~~  390 (399)
                      +++++.+.+|.|+||.|++-.
T Consensus       124 ad~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_         124 ADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCCcccCCCCCCHHHHHHHcC
Confidence            999999999999999998654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.2e-18  Score=146.56  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=87.2

Q ss_pred             CccchHHHHHHHHc---CCHHHHHHHHhhCChhhhhCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhccCCCCCccc
Q psy1036          83 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  159 (399)
Q Consensus        83 ~~~~~T~Lh~Aa~~---G~~~~v~~Ll~~~p~~Ll~~g~~~~~~~d~~g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l  159 (399)
                      +..|.||||+|+..   |+.++|+        +|++.|++++. ++..|+||||+||..|+.+++++|+++|++      
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~--------~Ll~~gadin~-~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad------  106 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVD--------FLVQNSGNLDK-QTGKGSTALHYCCLTDNAECLKLLLRGKAS------  106 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHH--------HHHHHCSCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHH--------HHHHcCCChhh-hhhhhccccccccccccccccccccccCcc------
Confidence            45678999999984   7789999        88899999888 577899999999999999999999999998      


Q ss_pred             cccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy1036         160 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTS  216 (399)
Q Consensus       160 ~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~LL~~g~a~~~  216 (399)
                                          ++.+|. .|+||||+|+..|+.+++++|++.+....+
T Consensus       107 --------------------~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1         107 --------------------IEIANE-SGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             --------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence                                889998 699999999999999999999998743333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-18  Score=140.46  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=88.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCCCccccccCCChhHHHHHHhhhccCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy1036         128 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  207 (399)
Q Consensus       128 g~T~LH~Aa~~g~~~iv~~Ll~~ga~~~~~~l~~a~~~~~~~~~~~~~~~~~vn~~d~~~G~TpLh~Aa~~g~~~iv~~L  207 (399)
                      +.++||+||..|+.++|++|+++|++                          +|.+|. .|+||||+|+ .|+.++|++|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad--------------------------~n~~~~-~g~t~l~~a~-~g~~~~v~~L   54 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN--------------------------PNAPNS-YGRRPIQVMM-MGSARVAELL   54 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC--------------------------TTCCCS-SSCCTTTSSC-TTCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc--------------------------cccccc-cccccccccc-cccccccccc
Confidence            46799999999999999999999987                          789998 6999999775 7999999999


Q ss_pred             HhCCCCCcccCCCCCC-cHHHHHHhCCCHHHHHHHHhccCchhhcccCCC
Q psy1036         208 IGCAKIQTSVRNKEGK-TPLDVCFKMPSVDSMGPLSTKLTPTKVATKSEG  256 (399)
Q Consensus       208 L~~g~a~~~~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  256 (399)
                      +++| ++++.+|..|. ||||+|+++|+.+++++|++.+.........+.
T Consensus        55 l~~g-a~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~  103 (125)
T d1bi7b_          55 LLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR  103 (125)
T ss_dssp             HTTT-CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCC
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            9999 99999998876 699999999999999999999865554444433

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.28  E-value=0.014  Score=36.47  Aligned_cols=33  Identities=15%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             ccccHHHHHHHHHhccccccCCCCCHHHHHHHH
Q psy1036           3 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA   35 (399)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~   35 (399)
                      ||++-.|+...++...+++++.|++.++|++|.
T Consensus        14 Iy~~W~e~~~~V~g~~ga~~k~F~t~~eA~~~l   46 (47)
T d1qhka_          14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFL   46 (47)
T ss_dssp             EEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHH
T ss_pred             ccCCHHHHHHHhcCCCCCeECCcCCHHHHHHhh
Confidence            788999999999999999999999999999986