Psyllid ID: psy10394

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccEEEEEEcccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHEEHHHHEcccccccEEEEEc
Coil and Loop (DISEMBL)
mevggkrdrgrpktrymhtvfpqdlkeKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Flexible Loop (DISEMBL)
mevggkrdrgrpktrymhtvfpqdlkekKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Low Complexity Region (SEG)
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Disordered region (IsUnstruct)
******************TVF*******KLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEV*****
Disordered Region (DISOPRED)
********RGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQ*VHFKYI
Disordered Region (DISEMBL)
************KTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Disordered Region (DISPRO)
**********RPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
P29742	1678	Clathrin heavy chain OS=D	yes	N/A	0.597	0.029	0.877	6e-19
Q68FD5	1675	Clathrin heavy chain 1 OS	yes	N/A	0.597	0.029	0.795	6e-18
Q00610	1675	Clathrin heavy chain 1 OS	yes	N/A	0.597	0.029	0.795	6e-18
P49951	1675	Clathrin heavy chain 1 OS	yes	N/A	0.597	0.029	0.795	6e-18
P11442	1675	Clathrin heavy chain 1 OS	yes	N/A	0.597	0.029	0.795	6e-18
P53675	1640	Clathrin heavy chain 2 OS	no	N/A	0.804	0.040	0.590	9e-18
P34574	1681	Probable clathrin heavy c	yes	N/A	0.804	0.039	0.606	6e-17
Q10161	1666	Probable clathrin heavy c	yes	N/A	0.817	0.040	0.432	6e-11
Q2QYW2	1708	Clathrin heavy chain 2 OS	yes	N/A	0.621	0.029	0.568	2e-10
Q2RBN7	1708	Clathrin heavy chain 1 OS	yes	N/A	0.621	0.029	0.568	2e-10

>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/49 (87%), Positives = 45/49 (91%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYI
Sbjct: 685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYI 733

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Drosophila melanogaster (taxid: 7227)

>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 53/66 (80%)

Query: 17  MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
           +H +   ++++      Q+A+KYHEQL T+AL++LFESFKSY+GLFYFLGSIVN+SQD +
Sbjct: 667 LHAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYKGLFYFLGSIVNFSQDPD 726

Query: 77  VHFKYI 82
           VH KYI
Sbjct: 727 VHLKYI 732

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 51/66 (77%)

Query: 17  MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
           +  +  Q++++    V QIA+KYHEQL    LI++FE+ KSYEGLFYFLGSIVN+SQD E
Sbjct: 669 LKAMLTQNIRQNLQVVVQIASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFSQDPE 728

Query: 77  VHFKYI 82
           VHFKYI
Sbjct: 729 VHFKYI 734

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chc1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 48/67 (71%)

Query: 16  YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQ 75
           Y+  +   +L++    V QIAT+Y + +  + +I++FE FK++EGL+Y+LGSIVN ++D 
Sbjct: 663 YLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYYLGSIVNITEDP 722

Query: 76  EVHFKYI 82
           EV +KYI
Sbjct: 723 EVVYKYI 729

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica GN=Os12g0104800 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           V Q A +Y EQL   A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYI 746

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           V Q A +Y EQL   A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYI 746

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
383861751	1678	PREDICTED: clathrin heavy chain-like [Me	0.597	0.029	0.979	3e-20
322795651	1723	hypothetical protein SINV_03041 [Solenop	0.597	0.028	0.979	3e-20
350403105	1678	PREDICTED: clathrin heavy chain-like [Bo	0.597	0.029	0.979	3e-20
340728255	1678	PREDICTED: clathrin heavy chain-like [Bo	0.597	0.029	0.979	3e-20
328779022	1678	PREDICTED: clathrin heavy chain-like iso	0.597	0.029	0.979	3e-20
307200331	1678	Clathrin heavy chain [Harpegnathos salta	0.597	0.029	0.979	3e-20
307168135	1676	Clathrin heavy chain [Camponotus florida	0.597	0.029	0.979	3e-20
332020169	1645	Clathrin heavy chain [Acromyrmex echinat	0.597	0.029	0.979	3e-20
380013532	1635	PREDICTED: LOW QUALITY PROTEIN: clathrin	0.597	0.029	0.979	4e-20
156544986	1680	PREDICTED: clathrin heavy chain-like iso	0.597	0.029	0.979	4e-20

>gi|383861751|ref|XP_003706348.1| PREDICTED: clathrin heavy chain-like [Megachile rotundata]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795651|gb|EFZ18330.1| hypothetical protein SINV_03041 [Solenopsis invicta]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403105|ref|XP_003486702.1| PREDICTED: clathrin heavy chain-like [Bombus impatiens]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728255|ref|XP_003402443.1| PREDICTED: clathrin heavy chain-like [Bombus terrestris]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779022|ref|XP_623111.3| PREDICTED: clathrin heavy chain-like isoform 1 [Apis mellifera]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200331|gb|EFN80585.1| Clathrin heavy chain [Harpegnathos saltator]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168135|gb|EFN61414.1| Clathrin heavy chain [Camponotus floridanus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020169|gb|EGI60613.1| Clathrin heavy chain [Acromyrmex echinatior]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 653 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 701

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013532|ref|XP_003690808.1| PREDICTED: LOW QUALITY PROTEIN: clathrin heavy chain-like [Apis florea]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544986|ref|XP_001607995.1| PREDICTED: clathrin heavy chain-like isoform 1 [Nasonia vitripennis] gi|345481953|ref|XP_003424493.1| PREDICTED: clathrin heavy chain-like isoform 2 [Nasonia vitripennis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYI
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYI 732

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
UNIPROTKB|F1P3J1	500	CLTC "Uncharacterized protein"	0.597	0.098	0.795	3.3e-18
FB|FBgn0000319	1678	Chc "Clathrin heavy chain" [Dr	0.597	0.029	0.877	9.9e-18
UNIPROTKB|I3LGD4	769	I3LGD4 "Uncharacterized protei	0.597	0.063	0.795	1.7e-17
UNIPROTKB|F1MPU0	1661	CLTC "Clathrin heavy chain 1"	0.597	0.029	0.795	1.4e-16
UNIPROTKB|F1NW23	1662	CLTC "Uncharacterized protein"	0.597	0.029	0.795	1.4e-16
UNIPROTKB|P49951	1675	CLTC "Clathrin heavy chain 1"	0.597	0.029	0.795	1.4e-16
UNIPROTKB|F1PHQ0	1675	CLTC "Uncharacterized protein"	0.597	0.029	0.795	1.4e-16
UNIPROTKB|Q00610	1675	CLTC "Clathrin heavy chain 1"	0.597	0.029	0.795	1.4e-16
MGI|MGI:2388633	1675	Cltc "clathrin, heavy polypept	0.597	0.029	0.795	1.4e-16
RGD|2364	1675	Cltc "clathrin, heavy chain (H	0.597	0.029	0.795	1.4e-16

UNIPROTKB|F1P3J1 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   419 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 467

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

FB|FBgn0000319 Chc "Clathrin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
 Identities = 43/49 (87%), Positives = 45/49 (91%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYI
Sbjct:   685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYI 733

GO:0007291 "sperm individualization" evidence=IMP

GO:0016183 "synaptic vesicle coating" evidence=NAS;TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0030125 "clathrin vesicle coat" evidence=TAS

GO:0005905 "coated pit" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0030129 "clathrin coat of synaptic vesicle" evidence=NAS

GO:0030132 "clathrin coat of coated pit" evidence=IEA;NAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0035002 "liquid clearance, open tracheal system" evidence=IMP

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IMP

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006897 "endocytosis" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0033363 "secretory granule organization" evidence=IMP

GO:0030141 "secretory granule" evidence=IDA

GO:0007594 "puparial adhesion" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

UNIPROTKB|I3LGD4 I3LGD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1MPU0 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   671 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 719

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1NW23 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   671 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 719

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0033572 "transferrin transport" evidence=IEA

UNIPROTKB|P49951 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0030117 "membrane coat" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1PHQ0 CLTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q00610 CLTC "Clathrin heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0030118 "clathrin coat" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0032588 "trans-Golgi network membrane" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0031623 "receptor internalization" evidence=IMP

GO:0033572 "transferrin transport" evidence=IMP

MGI|MGI:2388633 Cltc "clathrin, heavy polypeptide (Hc)" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005819 "spindle" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IDA

GO:0030118 "clathrin coat" evidence=ISO

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030506 "ankyrin binding" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031523 "Myb complex" evidence=ISO

GO:0031623 "receptor internalization" evidence=ISO

GO:0033572 "transferrin transport" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0090307 "spindle assembly involved in mitosis" evidence=ISO

RGD|2364 Cltc "clathrin, heavy chain (Hc)" [Rattus norvegicus (taxid:10116)]

 Score = 217 (81.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005819 "spindle" evidence=IEA;ISO;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0007067 "mitosis" evidence=IEA;ISO;IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0030117 "membrane coat" evidence=ISO

GO:0030118 "clathrin coat" evidence=IDA;TAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030315 "T-tubule" evidence=IDA

GO:0030506 "ankyrin binding" evidence=IDA

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IDA

GO:0031623 "receptor internalization" evidence=IEA;ISO

GO:0033572 "transferrin transport" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34574	CLH_CAEEL	No assigned EC number	0.6060	0.8048	0.0392	yes	N/A
P11442	CLH1_RAT	No assigned EC number	0.7959	0.5975	0.0292	yes	N/A
Q00610	CLH1_HUMAN	No assigned EC number	0.7959	0.5975	0.0292	yes	N/A
Q2RBN7	CLH1_ORYSJ	No assigned EC number	0.5686	0.6219	0.0298	yes	N/A
P29742	CLH_DROME	No assigned EC number	0.8775	0.5975	0.0292	yes	N/A
P49951	CLH1_BOVIN	No assigned EC number	0.7959	0.5975	0.0292	yes	N/A
P25870	CLH_DICDI	No assigned EC number	0.5098	0.6219	0.0301	yes	N/A
Q0WNJ6	CLAH1_ARATH	No assigned EC number	0.5686	0.6219	0.0299	yes	N/A
Q0WLB5	CLAH2_ARATH	No assigned EC number	0.5686	0.6219	0.0299	yes	N/A
Q68FD5	CLH1_MOUSE	No assigned EC number	0.7959	0.5975	0.0292	yes	N/A
Q2QYW2	CLH2_ORYSJ	No assigned EC number	0.5686	0.6219	0.0298	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
smart00299	140	smart00299, CLH, Clathrin heavy chain repeat homol	4e-05

>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 36 ATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN-YSQDQEVHFKYI 82
            +  + +    +++LFE     E L  +L S +   S++  +  K I
Sbjct: 1  LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLI 48

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG0985|consensus	1666		100.0
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	93.38
smart00384	26	AT_hook DNA binding domain with preference for A/T	90.74
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.05

>KOG0985|consensus

Probab=100.00  E-value=1.5e-34  Score=254.19  Aligned_cols=68  Identities=60%  Similarity=1.026  Sum_probs=67.3

Q ss_pred             hhHHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeeccccccccCccceeeeC
Q psy10394         15 RYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI   82 (82)
Q Consensus        15 ~~L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYI   82 (82)
                      -||++||++|+|||||+|||||+|||||||+++||+|||+||||||||||||||||+|||||||||||
T Consensus       664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYI  731 (1666)
T KOG0985|consen  664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYI  731 (1666)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999998

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=93.38  E-value=0.03  Score=26.32  Aligned_cols=9  Identities=67%  Similarity=1.287  Sum_probs=4.0

Q ss_pred             ccCCCCccc
Q psy10394          6 KRDRGRPKT   14 (82)
Q Consensus         6 ~~~~~~~~~   14 (82)
                      +|.||||++
T Consensus         1 ~r~RGRP~k    9 (13)
T PF02178_consen    1 KRKRGRPRK    9 (13)
T ss_dssp             S--SS--TT
T ss_pred             CCcCCCCcc
Confidence            578999986

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=90.74  E-value=0.11  Score=28.54  Aligned_cols=10  Identities=60%  Similarity=1.139  Sum_probs=8.4

Q ss_pred             ccCCCCccch
Q psy10394          6 KRDRGRPKTR   15 (82)
Q Consensus         6 ~~~~~~~~~~   15 (82)
                      +|+||||++.
T Consensus         1 kRkRGRPrK~   10 (26)
T smart00384        1 KRKRGRPRKA   10 (26)
T ss_pred             CCCCCCCCCC
Confidence            6899999874

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.05  E-value=0.047  Score=35.59  Aligned_cols=44  Identities=23%  Similarity=0.401  Sum_probs=37.0

Q ss_pred             HHhhhCHHHHHHHHHhcCccceeeeeecccccc-ccCccceeeeC
Q psy10394         39 YHEQLTTKALIDLFESFKSYEGLFYFLGSIVNY-SQDQEVHFKYI   82 (82)
Q Consensus        39 Ysd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~-seDpdVhFKYI   82 (82)
                      ..+.+.++.+|..|++.+..+-++-||-+++.. +.++++|-.+|
T Consensus         4 ~~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li   48 (140)
T smart00299        4 VSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLI   48 (140)
T ss_pred             CCCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHH
Confidence            467889999999999999999999999999877 57777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
1xi4_A	1630	Clathrin D6 Coat Length = 1630		5e-19

>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)
Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	3e-19

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630

 Score = 78.9 bits (194), Expect = 3e-19
 Identities = 39/51 (76%), Positives = 48/51 (94%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYI
Sbjct: 682 CVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI 732

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.97
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	84.77

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.97  E-value=8.5e-33  Score=245.75  Aligned_cols=68  Identities=57%  Similarity=1.017  Sum_probs=67.2

Q ss_pred             hhHHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeeccccccccCccceeeeC
Q psy10394         15 RYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI   82 (82)
Q Consensus        15 ~~L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYI   82 (82)
                      .||++||+.|+|||||+|||||+||||+||+++||+|||+|||+||||||||||||+|||||||||||
T Consensus       665 ~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi  732 (1630)
T 1xi4_A          665 ECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYI  732 (1630)
T ss_pred             HHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999998

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=84.77  E-value=0.29  Score=26.20  Aligned_cols=10  Identities=70%  Similarity=1.042  Sum_probs=8.6

Q ss_pred             CccCCCCccc
Q psy10394          5 GKRDRGRPKT   14 (82)
Q Consensus         5 ~~~~~~~~~~   14 (82)
                      .||.|||||-
T Consensus         4 pKrpRgRpkG   13 (26)
T 2ezd_A            4 PKRPRGRPKG   13 (26)
T ss_dssp             CCCCSSCCTT
T ss_pred             CcCCCCCcCc
Confidence            5899999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.34

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=3.3e-06  Score=62.14  Aligned_cols=64  Identities=9%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             HHHhcccCcchhHHHHHHHHHHHHhhhCHHHHHHHHHhcCccceeeeeecccccc-ccCccceeeeC
Q psy10394         17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNY-SQDQEVHFKYI   82 (82)
Q Consensus        17 L~elL~~N~rqNlQiVVqVA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~-seDpdVhFKYI   82 (82)
                      ...++..+-.++.|++......+.+.+  ..+|++||+++.+|+|++||.++++. +.++++|.++|
T Consensus        76 ~~~l~~~~e~~la~i~~~~~~~~~d~l--~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~  140 (336)
T d1b89a_          76 CFACVDGKEFRLAQMCGLHIVVHADEL--EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA  140 (336)
T ss_dssp             HHHHHHTTCHHHHHHTTTTTTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHhhcCHHHH--HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHH
Confidence            344555554555666665566677766  46999999999999999999999886 66777877653