Psyllid ID: psy10417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MLIITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGVK
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccccccEEEEcccHHHHHHHHHHccccccEEEEEcccccccccccccHHcccccccccccEEEEEEcccccccccccEEEccccccccHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccccEEEccHHHHHccccccccEEEEcccEEEEEEEEccccEEEEEEEEEccEEEEEEEccEEEEEccccccHHHHHHcccccHHHHHHccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccEEEEEEcccHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHccccccccEEEEcccccccccccccEEccccccEEcccHHHHHEHHEcccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccEccccccHHHHccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEccHHHHHHcHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHHcEccHHHHHHHcccccEcccccEEEEcHccccEEEEEEcccEEccccccccccEEEccc
Coil and Loop (DISEMBL)
mliitlapkreeflygnkrlldeydfIIVGAGVGGCVVAHrlsevpswKVLLIEAGDEDRIFTDLVLISHYyqftpynwgfkttpqknaclglpnnqclwpqgkgvggstiingniftrgfpndfneweslgntgwsfDDVLKYFKKFerinipelnsdtvyhntngllnveyspyksklSDIFLkvglfnsdtvyhntngllnveyspykskLSDIFLKSskelgytnidynnpntkiGFSIVQSTIKNGRRMTASKAYLkpiidrtnlhviknSRVVKIIIDpiskqakgvelvknghkrsvFARKEVIvssgafnspkllmlsgvgprehltelgipvvqdlrvgdNLMEHVAYSALTFGINKTFSVVTKRLlrqpiktgvk
Flexible Loop (DISEMBL)
mliitlapkreeFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERinipelnsdtvyhNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNidynnpntkigFSIVQSTIKNGRRMTASKaylkpiidrtnlhviknsrVVKIIIdpiskqakgvelvknghkrsvfarkevivssgafnspKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKrllrqpiktgvk
Low Complexity Region (SEG)
MLIITLAPKREEFLYGNKRLLDEYDFIIvgagvggcvvaHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGVK
Disordered region (IsUnstruct)
**IITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLR********
Disordered Region (DISOPRED)
MLIIT**P**********RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGV*
Disordered Region (DISEMBL)
MLIITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGVK
Disordered Region (DISPRO)
MLIITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGVK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIITLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQPIKTGVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.776	0.478	0.391	1e-60
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.774	0.476	0.375	2e-59
Q47944	531	L-sorbose 1-dehydrogenase	yes	N/A	0.740	0.536	0.379	2e-52
Q8UH55	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.355	9e-50
B5ZUG2	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.357	2e-49
Q1MJU4	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.349	2e-49
B3PTE0	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.355	3e-49
Q2KB43	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.352	4e-49
C3MIE4	549	Choline dehydrogenase OS=	yes	N/A	0.753	0.528	0.352	3e-48
P54223	549	Choline dehydrogenase OS=	no	N/A	0.753	0.528	0.349	6e-48

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  234 bits (596), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 190/337 (56%), Gaps = 38/337 (11%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
           EYDFI++G G  G VVA RLSEVP WKVLLIEAG ++ +   +  +   +  +  ++ + 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 83  TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
           T P++ ACL     +C WP+GK +GG++++NG ++ RG   D+++W + GN GWS+ DVL
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVL 183

Query: 143 KYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGL 202
            +FKK E  N+      T YH   GLL V   PY   LS   LK G              
Sbjct: 184 PFFKKSED-NLELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAG-------------- 228

Query: 203 LNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLK 262
                               +E+G++  D N  N+  GF I Q T +NG R ++++A+L+
Sbjct: 229 --------------------EEMGFSVQDLNGQNS-TGFMIAQMTARNGIRYSSARAFLR 267

Query: 263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPK 321
           P   R NLH++ N+ V K++I P +K   GVE+    G  R +  +KEVIVS GA NSP+
Sbjct: 268 PARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQ 327

Query: 322 LLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
           +L+LSGVGP+E L ++ +  V  L  VG NL  HVAY
Sbjct: 328 ILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAY 364

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 193/338 (57%), Gaps = 40/338 (11%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
           EYDFI++G G  G VVA RLSEVP WKVLLIEAG ++ +   +  +   +  +  ++ + 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 83  TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
           T P+  ACL     +C WP+GK +GG++++NG ++ RG   D+++W + GN GW+++DVL
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183

Query: 143 KYFKKFE-RINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
            +FKK E  +++ E+ ++  YH   GLL V   PY   LS   LK G             
Sbjct: 184 PFFKKSEDNLDLDEVGTE--YHAKGGLLPVGKFPYNPPLSYAILKAG------------- 228

Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYL 261
                                +ELG++  D N  N+  GF I Q T +NG R ++++A+L
Sbjct: 229 ---------------------EELGFSVHDLNGQNS-TGFMIAQMTARNGIRYSSARAFL 266

Query: 262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP 320
           +P   R NLH++ N+   KI+I P +K   GVE+    G  R +  +KEV++S+GA NSP
Sbjct: 267 RPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSP 326

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
            +L+LSGVGP++ L ++ +  V +L  VG NL  HV Y
Sbjct: 327 HILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTY 364

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 181/335 (54%), Gaps = 50/335 (14%)

Query: 24  YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFT--PYNWGF 81
           +D+I+VG G  GCV+A RLSE PS +V LIEAG  D     + +   + + T  P+ W  
Sbjct: 5   FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRD-THPLIHMPVGFAKMTTGPHTWDL 63

Query: 82  KTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDV 141
            T PQK+A     N Q  + QG+ +GG + IN  +FTRG P+DF+ W + G  GWSF DV
Sbjct: 64  LTEPQKHAN----NRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119

Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
            KYF + E         + V+  T                              +H TNG
Sbjct: 120 QKYFIRSE--------GNAVFSGT------------------------------WHGTNG 141

Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYT-NIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
            L V      +  S  F++S +E+G   N D+N  + + G  I Q TI+N RR + +  Y
Sbjct: 142 PLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDFNGASQE-GAGIYQMTIRNNRRCSTAVGY 200

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           L+P + R NL V+  + V+KI+ +    +A GV+ + NG   +  A +E++V++GA  +P
Sbjct: 201 LRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYIANGTLNTAEASQEIVVTAGAIGTP 258

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           KL+MLSGVGP  HL E GIPVVQDL  VG+NL +H
Sbjct: 259 KLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDH 293

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betA PE=3 SV=2

 Score =  197 bits (502), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 185/338 (54%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + D++IVG+G  G  +A+RLSE   + V++IEAG  D   F  +   ++       YNWG
Sbjct: 2   QADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG  GW++ D
Sbjct: 62  YLSEPEPN----LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E  +      +  +  T+G L+V+  P                S+ ++H   
Sbjct: 118 VLPYFKRMEHSH----GGEEGWRGTDGPLHVQRGPV---------------SNPLFH--- 155

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
                            F+++  + G+   D  N + + GF +++ TI NGRR +A+ AY
Sbjct: 156 ----------------AFIQAGAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRWSAANAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ ++ N    K+II+  + +A GVE+ + G   +V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRGNVTLV-NGFARKVIIE--NGRAVGVEIERRGRVETVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
           KLLMLSG+GP  HL ++GI V  D   VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + DF+I+G+G  G  +A+RLSE     VL+IEAG  D   F  +   ++       YNWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG  GW++ D
Sbjct: 62  YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+   + + L   F+++ K+ G+   +  N + + GF +++ TI +GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFSGRRWSAANAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ +I      +I+I+    +A GVE+ + G    V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRKNVEIIYGF-AQRIVIE--DGRATGVEIERGGKIEVVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
           KLLMLSG+GP EHL E+GI V  D   VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium leguminosarum bv. trifolii (strain WSM2304) (taxid: 395492)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 183/338 (54%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + DF+I+G+G  G  +A+RLSE     V++IEAG  D   F  +   ++       YNWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG +GW++ D
Sbjct: 62  YLSEPEAN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+   + + L   F+++ K+ G+   +  N + + GF +++ TI  GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFGGRRWSAANAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ ++      +I+I+    +A GVE+ +NG    V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRDNVKIVYG-LAQRIVIE--DGRATGVEIERNGRIEVVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEHVAY 357
           KLLMLSG+GP +HL ++GI V  D   VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium leguminosarum bv. viciae (strain 3841) (taxid: 216596)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1

 Score =  196 bits (498), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 183/338 (54%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + DF+I+G+G  G  +A+RLSE     VL+IEAG  D   F  +   ++       YNWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG +GW++ D
Sbjct: 62  YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+   + + L   F+++ K+ G+   D  N + + GF +++ TI +GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQEGFGLMEQTIFSGRRWSAANAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ ++      KI+I+    +A GVE+ + G    V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRKNVGMVYG-LARKIVIE--DGRATGVEIERGGKVEVVKATREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
           KLLMLSG+GP +HL ++GI V  D   VG NL +H+ +
Sbjct: 257 KLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium etli (strain CIAT 652) (taxid: 491916)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 183/338 (54%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + DF+I+G+G  G  +A+RLSE     VL+IEAG  D   F  +   ++       YNWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG +GW++ D
Sbjct: 62  YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EEGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+   + + L   F+++ K+ G+   +  N + + GF +++ TI  GRR +A+ AY
Sbjct: 140 GPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQEGFGLMEQTIFAGRRWSAANAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ ++      +I+I+  + +A GVE+ + G    V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRDNVGIVYG-LARRIVIE--NGRATGVEIERGGRTEVVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAY 357
           KLLMLSG+GP +HL E+GI V  D   VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + D+II+G+G  G  +AHRLSE     V+++E G  D   F  +   ++       YNWG
Sbjct: 2   QADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ +    L N +   P+GK +GGS+ ING ++ RG   DF+ WE LG  GW++ D
Sbjct: 62  YLSEPEPH----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL YFK+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYFKRME-------------HSHGG-------------------------EDGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+  P K+ L   F+++ K+ G+   D  N + + GF +++ T   GRR +A+ AY
Sbjct: 140 GPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQEGFGLMEQTTWRGRRWSAASAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           LKP + R N+ +I+     KI+I+  + +A GVE+ + G    V A +EVIVS+ +FNSP
Sbjct: 200 LKPALKRPNVQLIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPV-VQDLRVGDNLMEHVAY 357
           KLLMLSG+GP  HL +LGI V V    VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA PE=3 SV=2

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 48/338 (14%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED-RIFTDL-VLISHYYQFTPYNWG 80
           + DF+I+G+G  G  +A+RLSE     V+++E G  D   F  +   ++       YNWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDD 140
           + + P+ N    L N +   P+GK +GGS+ ING ++ RG   DFN WE LG  GW++ D
Sbjct: 62  YLSEPEPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYAD 117

Query: 141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           VL Y+K+ E             H+  G                         +  +  T+
Sbjct: 118 VLPYYKRME-------------HSHGG-------------------------EEGWRGTD 139

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAY 260
           G L+V+  P K+ L   F+++ KE G+   +  N + + GF +++ T   GRR +A+ AY
Sbjct: 140 GPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAASAY 199

Query: 261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
           L+P + R N+ +I+     KI+I+  + +A GVE+ + G    V A +EVIVS+ +FNSP
Sbjct: 200 LRPALKRPNVELIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSP 256

Query: 321 KLLMLSGVGPREHLTELGIPV-VQDLRVGDNLMEHVAY 357
           KLLMLSG+GP  HL E+GI V V    VG NL +H+ +
Sbjct: 257 KLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDHMEF 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
193620141	623	PREDICTED: glucose dehydrogenase [accept	0.870	0.537	0.483	3e-99
332376573	616	unknown [Dendroctonus ponderosae]	0.836	0.522	0.460	6e-89
328705618	623	PREDICTED: glucose dehydrogenase [accept	0.880	0.544	0.473	1e-87
91085219	610	PREDICTED: similar to glucose dehydrogen	0.838	0.529	0.456	2e-87
195454142	617	GK12793 [Drosophila willistoni] gi|19417	0.828	0.517	0.479	2e-85
195504097	616	GE23657 [Drosophila yakuba] gi|194185035	0.877	0.548	0.452	6e-85
24650267	616	CG6142 [Drosophila melanogaster] gi|7301	0.877	0.548	0.45	7e-85
255760084	368	MIP11914p [Drosophila melanogaster]	0.857	0.896	0.450	8e-85
270009065	614	hypothetical protein TcasGA2_TC015700 [T	0.838	0.526	0.456	9e-85
157130574	625	glucose dehydrogenase [Aedes aegypti] gi	0.844	0.52	0.434	1e-84

>gi|193620141|ref|XP_001952665.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Acyrthosiphon pisum] gi|328705616|ref|XP_003242858.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Acyrthosiphon pisum]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/372 (48%), Positives = 246/372 (66%), Gaps = 37/372 (9%)

Query: 10  REEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLIS 69
           RE+ L+G K +LDEYDFI+VG+G  G  VA RL+EVP WK+LL+EAG ++ I T +  I+
Sbjct: 42  REDPLFGYKPILDEYDFIVVGSGASGATVARRLAEVPEWKILLLEAGKQESIATSVPAIA 101

Query: 70  HYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWE 129
           HY+QFT +NW FKT  + NAC G+ N +CLWPQGKG+GGSTIIN NI+TRG   DF+ W 
Sbjct: 102 HYFQFTDFNWAFKTEEEPNACQGVVNKRCLWPQGKGLGGSTIINNNIYTRGNVRDFDRWA 161

Query: 130 SLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGL 189
             GN GWS+ DVL YF K E + IPEL   + YH   G + + YSP+KS           
Sbjct: 162 EAGNPGWSYRDVLPYFLKNEDVTIPELKR-SPYHGVGGPMPISYSPFKS----------- 209

Query: 190 FNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIK 249
                                  +L + FL+S+ ++G   +DYNNPN+ +GFS +Q TI 
Sbjct: 210 -----------------------RLVEAFLESAPQVGLNVVDYNNPNSHVGFSRIQGTIN 246

Query: 250 NGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKE 309
            GRR+T+++AYL+   + TNLH++  + V K++IDP +K A GVE  K+  +R   ARKE
Sbjct: 247 FGRRVTSARAYLRG--NLTNLHIVDGAFVTKVLIDPNTKVALGVEFEKDNRRRRAQARKE 304

Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
           VI+S+GAFN+PKLLMLSG+GP+EHL  LGI  + DLRVGDNL EH +Y+ L F +N+T  
Sbjct: 305 VILSAGAFNTPKLLMLSGIGPKEHLEPLGIKTISDLRVGDNLQEHPSYANLAFTVNQTVG 364

Query: 370 VVTKRLLRQPIK 381
           ++ +R+ +Q I+
Sbjct: 365 LIPERIYKQGIR 376

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|332376573|gb|AEE63426.1| unknown [Dendroctonus ponderosae]

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 230/358 (64%), Gaps = 36/358 (10%)

Query: 19  RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYN 78
           R+L EYDFI+VGAG  GC VA+RLSE P+W VLL+EAG  +    D+ ++++Y QFT  N
Sbjct: 46  RMLKEYDFIVVGAGTAGCAVANRLSENPNWTVLLVEAGRPENFIMDMPILANYLQFTETN 105

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSF 138
           W ++T P  NACLG    +C WP+GK VGGS+++N  I+TRG   D++ W  +GN GWSF
Sbjct: 106 WRYQTEPNGNACLGFDEQRCNWPRGKVVGGSSVLNYMIYTRGNRRDYDHWAKMGNEGWSF 165

Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
            DVL YF+K E   +P  N    YH  NG L+V Y+PY++K++D  +   L         
Sbjct: 166 KDVLPYFRKIENFAVPG-NISAGYHGKNGYLSVSYAPYRTKIADAIVNASL--------- 215

Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK 258
                                    + G   +DYN P T++G S +Q ++++G R ++S+
Sbjct: 216 -------------------------QYGLPYVDYNGP-TQVGVSHLQLSLRDGVRESSSR 249

Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
           AYL PI +R NLH+ K S V +I+IDP S+Q KG+E+VKNG    +  +KEVI S+GA N
Sbjct: 250 AYLHPISNRPNLHLTKYSMVKRIVIDPKSQQVKGIEMVKNGQTYFIKVKKEVISSAGAIN 309

Query: 319 SPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
           SP+LLMLSGVGP++HL +LGIPV+ +LRVG NLM+H+    LTF IN+T S+ T+RL+
Sbjct: 310 SPQLLMLSGVGPKKHLQKLGIPVISNLRVGYNLMDHIGMGGLTFLINETVSLKTERLI 367

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705618|ref|XP_003242859.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/376 (47%), Positives = 233/376 (61%), Gaps = 37/376 (9%)

Query: 10  REEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLIS 69
           RE+  +GNK++LDEYDFI++GAG  G  VA RL+EV  W +LL+EAG E+ + T L  I+
Sbjct: 39  REDPQFGNKKILDEYDFIVIGAGAAGATVARRLAEVSKWNILLLEAGGEESLITSLPSIA 98

Query: 70  HYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWE 129
           HY QFT YNW + T  + +AC GL N  C WP GKG+GGSTIIN N++TRG   DF+ W 
Sbjct: 99  HYLQFTNYNWAYHTEQELHACKGLVNKTCPWPAGKGLGGSTIINNNMYTRGNVRDFDRWA 158

Query: 130 SLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGL 189
             GN GWS++D+L YF K E IN+PEL   + YH   G L + Y  +KS           
Sbjct: 159 EAGNQGWSYNDILPYFIKNENINVPELKR-SPYHGVEGPLPINYPEFKS----------- 206

Query: 190 FNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIK 249
                                  KL + FL+S+ E+G +  DYN P + + FS VQST  
Sbjct: 207 -----------------------KLVEAFLESAPEVGMSVGDYNAPGSHVVFSRVQSTTS 243

Query: 250 NGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKE 309
            GRR+T+++AYL   ++  NLH+++   V KI+ID  +K A GVE +KN  KR V A+KE
Sbjct: 244 GGRRITSARAYLHDNLN--NLHIVEFGYVTKILIDDRTKVAYGVEFMKNKKKRRVMAKKE 301

Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
           VIVS+G FNS KLLMLSG+GP+EHL  LGI  + DLRVGDNL EH A++ L F +N+T S
Sbjct: 302 VIVSAGTFNSAKLLMLSGIGPKEHLGPLGIKTISDLRVGDNLQEHPAFAGLAFLVNETVS 361

Query: 370 VVTKRLLRQPIKTGVK 385
            V  R+ R  I    K
Sbjct: 362 FVPDRIYRNLINEAFK 377

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|91085219|ref|XP_972532.1| PREDICTED: similar to glucose dehydrogenase [Tribolium castaneum] gi|270009084|gb|EFA05532.1| hypothetical protein TcasGA2_TC015719 [Tribolium castaneum]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/359 (45%), Positives = 236/359 (65%), Gaps = 36/359 (10%)

Query: 18  KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPY 77
           + LL EYDFI+VGAG  GCVVA+RLSE P+WKVLLIEAG  +    D+ ++++Y QFT  
Sbjct: 42  RNLLPEYDFIVVGAGSAGCVVANRLSENPNWKVLLIEAGRTENYLMDMPILANYLQFTDS 101

Query: 78  NWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
           NW +KTTP    C+G+ N QC WP+GK VGGS+++   I+TR    D++ W  LGNTGWS
Sbjct: 102 NWKYKTTPSGRFCMGMDNQQCKWPRGKVVGGSSVLKYMIYTRENHRDYDHWADLGNTGWS 161

Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           F +VL YFKK E  ++P+ +    YH+  G L+V Y+P+K+K                  
Sbjct: 162 FKEVLPYFKKVENFSVPD-SPYPEYHSKEGYLSVSYAPFKTK------------------ 202

Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
                           ++D  +++S + G  ++DYN P  ++G S +Q ++++G R +AS
Sbjct: 203 ----------------IADAIIEASNQNGIKSVDYNGP-IQVGVSRLQVSMRDGVRESAS 245

Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
           +AYL PI +R NLHV K + V K++IDP +KQ  GVE  ++G +  + A KEVIVS+GA 
Sbjct: 246 RAYLHPIRNRPNLHVKKLAMVSKVLIDPKTKQTIGVEFFRDGTRYQIRASKEVIVSAGAI 305

Query: 318 NSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
           NSP+LLMLSG+GPR+HLT+ GIPV+ +L+VG NLM+H+A   LTF INK +S+ T++++
Sbjct: 306 NSPQLLMLSGIGPRKHLTQKGIPVLSNLKVGYNLMDHIALGGLTFIINKPYSLNTEKMI 364

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454142|ref|XP_002074106.1| GK12793 [Drosophila willistoni] gi|194170191|gb|EDW85092.1| GK12793 [Drosophila willistoni]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/359 (47%), Positives = 229/359 (63%), Gaps = 40/359 (11%)

Query: 20  LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
            L EYDFIIVGAG  GCV+A+RLSE+ S  VLL+EAGD++   +D+ L +   Q T YNW
Sbjct: 45  FLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAALTQMTRYNW 104

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
           G+KT P  NAC GL    C WP+G+GVGG+++IN  ++TRG   D++EW +  NTGWS+D
Sbjct: 105 GYKTEPTPNACRGLKQGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAANNTGWSYD 164

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           ++L YFKK ERI I EL   + YH  NG L+V+Y+ YKS L    LK             
Sbjct: 165 EILPYFKKSERIGIRELYK-SPYHGRNGPLDVQYTDYKSHL----LKA------------ 207

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTK--IGFSIVQSTIKNGRRMTAS 257
                             FLKS +ELGY   D ++PN +  +GFS  Q+TI+NGRR + S
Sbjct: 208 ------------------FLKSGRELGY---DISDPNGEHLMGFSRSQATIRNGRRCSTS 246

Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF 317
           KA+++PI+ R NLH+   S V K+IIDP +K A GVE +K   +  V A+KEVI+S+G+ 
Sbjct: 247 KAFIQPIVARKNLHISMKSWVTKLIIDPETKTAVGVEFMKQRQRYVVRAKKEVILSAGSI 306

Query: 318 NSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
            SP+LLMLSGVGPR+HL +L I VV DL VG NL +H+  + L F +N + +V   RLL
Sbjct: 307 ASPQLLMLSGVGPRQHLQDLNISVVNDLPVGYNLQDHITLNGLVFVVNDSSTVNDARLL 365

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195504097|ref|XP_002098934.1| GE23657 [Drosophila yakuba] gi|194185035|gb|EDW98646.1| GE23657 [Drosophila yakuba]

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 172/380 (45%), Positives = 237/380 (62%), Gaps = 42/380 (11%)

Query: 2   LIITLAPKREEFLYGNK-----RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
           L++ LA   E  L  N+     R L EYDFIIVGAG  GCV+A+RLSE+ S  VLL+EAG
Sbjct: 21  LLVDLARDFETSLLNNRIPDTTRFLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAG 80

Query: 57  DEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNI 116
           D++   +D+ L +   Q T YNWG+K  P ++AC GL    C WP+G+GVGG+++IN  +
Sbjct: 81  DQETFISDVPLTAALTQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFML 140

Query: 117 FTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY 176
           +TRG   D++EW +  N+GWS+D++L YF+K ERI IPEL   + YH  NG L+V+Y+ Y
Sbjct: 141 YTRGHRRDYDEWATANNSGWSYDELLPYFRKSERIGIPELYK-SPYHGRNGQLDVQYTDY 199

Query: 177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPN 236
           +S+L    LK                               FLKS +E+GY   D N  +
Sbjct: 200 RSQL----LKA------------------------------FLKSGREMGYEITDPNGEH 225

Query: 237 TKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV 296
             +GF+  Q+TI+NGRR + SKA+++P++ R NLH+   S V ++IIDPI+K A GVE V
Sbjct: 226 L-MGFARSQATIRNGRRCSTSKAFIQPVVHRKNLHISMKSWVTRLIIDPITKTATGVEFV 284

Query: 297 KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVA 356
           K   +  V ARKEVI+S+G   SP+LLMLSG+GP EHL E  I V+QDL VG NL +H+ 
Sbjct: 285 KQRQRYVVRARKEVILSAGTIASPQLLMLSGIGPAEHLGEHNITVMQDLPVGYNLQDHIT 344

Query: 357 YSALTFGINKTFSVVTKRLL 376
            + L F +N + +V   RLL
Sbjct: 345 LNGLVFVVNDS-TVNDARLL 363

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24650267|ref|NP_651466.1| CG6142 [Drosophila melanogaster] gi|7301449|gb|AAF56574.1| CG6142 [Drosophila melanogaster]

 Score =  320 bits (820), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 171/380 (45%), Positives = 237/380 (62%), Gaps = 42/380 (11%)

Query: 2   LIITLAPKREEFLYGNK-----RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
           L++ LA   E     N+     R L EYDFIIVGAG  GCV+A+RLSE+ S  VLL+EAG
Sbjct: 21  LLVDLARDFETSFLNNRIPDTTRFLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAG 80

Query: 57  DEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNI 116
           D++   +D+ L +   Q T YNWG+K  P ++AC GL    C WP+G+GVGG+++IN  +
Sbjct: 81  DQETFISDVPLTAALTQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFML 140

Query: 117 FTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY 176
           +TRG   D++EW +  N+GWS+D++L YF+K ERI IPEL   + YH  NG L+V+Y+ Y
Sbjct: 141 YTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIGIPELYK-SPYHGRNGQLDVQYTDY 199

Query: 177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPN 236
           +S+L    LK                               FLKS +E+GY   D N  +
Sbjct: 200 RSQL----LKA------------------------------FLKSGREMGYEITDPNGEH 225

Query: 237 TKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV 296
             +GF+  Q+TI+NGRR + SKA+++P+++R NLH+   S V ++IIDPI+K A GVE V
Sbjct: 226 L-MGFARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPITKTATGVEFV 284

Query: 297 KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVA 356
           K   +  V ARKEVI+S+G   SP+LLMLSG+GP EHL E  I V+QDL VG NL +H+ 
Sbjct: 285 KQRQRYVVRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLPVGYNLQDHIT 344

Query: 357 YSALTFGINKTFSVVTKRLL 376
            + L F +N + +V   RLL
Sbjct: 345 LNGLVFVVNDS-TVNDARLL 363

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255760084|gb|ACU32627.1| MIP11914p [Drosophila melanogaster]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 232/371 (62%), Gaps = 41/371 (11%)

Query: 2   LIITLAPKREEFLYGNK-----RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
           L++ LA   E     N+     R L EYDFIIVGAG  GCV+A+RLSE+ S  VLL+EAG
Sbjct: 21  LLVDLARDFETSFLNNRIPDTTRFLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAG 80

Query: 57  DEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNI 116
           D++   +D+ L +   Q T YNWG+K  P ++AC GL    C WP+G+GVGG+++IN  +
Sbjct: 81  DQETFISDVPLTAALTQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFML 140

Query: 117 FTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY 176
           +TRG   D++EW +  N+GWS+D++L YF+K ERI IPEL   + YH  NG L+V+Y+ Y
Sbjct: 141 YTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIGIPEL-YKSPYHGRNGQLDVQYTDY 199

Query: 177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPN 236
           +S+L    LK                               FLKS +E+GY   D N  +
Sbjct: 200 RSQL----LKA------------------------------FLKSGREMGYEITDPNGEH 225

Query: 237 TKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV 296
             +GF+  Q+TI+NGRR + SKA+++P+++R NLH+   S V ++IIDPI+K A GVE V
Sbjct: 226 L-MGFARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPITKTATGVEFV 284

Query: 297 KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVA 356
           K   +  V ARKEVI+S+G   SP+LLMLSG+GP EHL E  I V+QDL VG NL +H+ 
Sbjct: 285 KQRQRYVVRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLPVGYNLQDHIT 344

Query: 357 YSALTFGINKT 367
            + L F +N +
Sbjct: 345 LNGLVFVVNDS 355

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009065|gb|EFA05513.1| hypothetical protein TcasGA2_TC015700 [Tribolium castaneum]

 Score =  320 bits (819), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 164/359 (45%), Positives = 229/359 (63%), Gaps = 36/359 (10%)

Query: 20  LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
           LL  YDFIIVGAG  GCV+A+RLSE PSW VLL+EAG  +    DL ++++Y QFT  NW
Sbjct: 45  LLPSYDFIIVGAGTAGCVLANRLSENPSWNVLLLEAGRPENYLMDLPVLANYIQFTDANW 104

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
            +KT P    CLG+ N QC WP+GK VGGS+++N  I+TRG   D+++W  LGN GW F 
Sbjct: 105 RYKTEPSDKFCLGMENQQCNWPRGKVVGGSSVLNYMIYTRGNWRDYDKWAELGNEGWGFK 164

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           DVL YFKK E   +P    +  YHN +G L V YSPYK                      
Sbjct: 165 DVLPYFKKIENFMVPG-PYNASYHNHDGYLAVSYSPYK---------------------- 201

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKA 259
                       +K++D  L+S++ +G   +DYN P  ++G S  Q T+++G R ++S+A
Sbjct: 202 ------------TKIADAVLESAQLMGLKLVDYNGP-IQVGVSRFQVTLRDGIRESSSRA 248

Query: 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319
           YL PI +R N H+ K S V KI+IDP +K+ +GVE+   G    + A KEV+V+ GA NS
Sbjct: 249 YLHPIKNRPNFHMRKYSTVTKILIDPTTKKVQGVEVDTKGTIYKIGASKEVLVAGGAVNS 308

Query: 320 PKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQ 378
           P+LLMLSG+GP++HLT++GIPV+ +L+VG NL++HVA   LTF I++ +S+ T+R+L +
Sbjct: 309 PQLLMLSGIGPKKHLTQMGIPVLSNLKVGYNLLDHVALGGLTFRIDEPYSLKTERVLSR 367

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130574|ref|XP_001661923.1| glucose dehydrogenase [Aedes aegypti] gi|108871846|gb|EAT36071.1| AAEL011806-PA [Aedes aegypti]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 230/361 (63%), Gaps = 36/361 (9%)

Query: 20  LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
            L EYDFI++GAG  G VVA+RLSEV  W VLL+EAG ++ + TD+ L +     T YNW
Sbjct: 56  FLKEYDFIVIGAGSAGSVVANRLSEVKDWNVLLLEAGKDENMLTDVPLTAGLTTLTGYNW 115

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
           G++  P   ACLGL +  C WP+G+G+GG+++IN  I+TRG   D+++WE  GNTGW + 
Sbjct: 116 GYRADPMNGACLGLQDGVCSWPKGRGLGGTSLINFLIYTRGHRKDYDDWERAGNTGWGYR 175

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           +VLKYFKK ER+ I                N++ SPY                    H+ 
Sbjct: 176 EVLKYFKKSERVKIN---------------NLKRSPY--------------------HSG 200

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKA 259
            G L++E+S Y++ +   F+++ K++GY   D N   + +GFS  Q+T++NGRR + +KA
Sbjct: 201 EGYLDIEHSSYETPMLRSFIEAGKQMGYVETDPNG-ESLLGFSKAQATMRNGRRCSTAKA 259

Query: 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319
           +L+P   R NLH+   SRV +I+IDPI+K A GVE +K+  + +V A KEV++S+G+  S
Sbjct: 260 FLRPAAYRPNLHISTLSRVTRILIDPITKSAYGVEFLKHKRRYAVKASKEVVLSAGSIAS 319

Query: 320 PKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKRLLRQP 379
           P+LLMLSGVGP+EHL E+G+PVV+DLRVG NL +HV+   L F +N+  +V  + +   P
Sbjct: 320 PQLLMLSGVGPKEHLQEVGVPVVKDLRVGFNLQDHVSLPGLVFTVNQPVTVRERDMRAPP 379

Query: 380 I 380
           +
Sbjct: 380 V 380

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.462	0.253	0.458	1.5e-77
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.480	0.213	0.438	5.5e-75
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.485	0.257	0.397	1.1e-69
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.418	0.258	0.392	7.4e-68
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.329	0.203	0.401	6.5e-49
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.332	0.198	0.359	9.9e-47
UNIPROTKB|E1C003	595	CHDH "Choline dehydrogenase" [	0.410	0.265	0.416	4.3e-43
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.540	0.337	0.464	6.6e-42
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.477	0.296	0.409	2.4e-41
TIGR_CMR|SPO_A0386	541	SPO_A0386 "oxidoreductase, GMC	0.420	0.299	0.392	4.7e-41

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 82/179 (45%), Positives = 120/179 (67%)

Query:   196 YHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
             YH   GLL V+ SP+ S L   F+++  +LGY N D N    + GF I Q TI+ G R +
Sbjct:   194 YHGRGGLLTVQESPWHSPLVAAFVEAGTQLGYDNRDINGAK-QAGFMIAQGTIRRGSRCS 252

Query:   256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG 315
              +KA+L+PI  R N H+  NS V ++II+P + +A+ VE VK+G    + AR+EVI+S+G
Sbjct:   253 TAKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVKHGKVYRIAARREVIISAG 312

Query:   316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTKR 374
             A N+P+L+MLSG+GPR+HL + GI V+QDL VG+N+ +HV    LTF ++K  ++V  R
Sbjct:   313 AINTPQLMMLSGLGPRKHLEKHGIRVLQDLPVGENMQDHVGMGGLTFLVDKPVAIVQDR 371

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 5.5e-75, Sum P(2) = 5.5e-75
 Identities = 82/187 (43%), Positives = 117/187 (62%)

Query:   194 TVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRR 253
             T YH T G L V+ +P+++ LS  FL++  E+GY N D N    + GF + QSTI+ G R
Sbjct:   433 TPYHETGGYLTVQEAPWRTPLSIAFLQAGIEMGYENRDINGAQ-QTGFMLTQSTIRRGAR 491

Query:   254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVS 313
              +  KA+++P+  R N  V+ ++   +I+ D   K+A GVE ++ G K  VF R+EVI S
Sbjct:   492 CSTGKAFIRPVRQRKNFDVLLHAEATRILFDK-QKRAIGVEYMRGGRKNVVFVRREVIAS 550

Query:   314 SGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFSVVTK 373
             +GA N+PKLLMLSGVGP EHL E  IPV+ DL VG+N+ +HV    LTF ++   +V   
Sbjct:   551 AGALNTPKLLMLSGVGPAEHLQEHNIPVISDLPVGNNMQDHVGLGGLTFVVDAPLTVTRN 610

Query:   374 RLLRQPI 380
             R    P+
Sbjct:   611 RFQTIPV 617

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
 Identities = 76/191 (39%), Positives = 120/191 (62%)

Query:   196 YHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
             YH T GL  V+ +PY + +   FL++ +E+GY  +D N    + GF   Q  ++ G R +
Sbjct:   233 YHGTGGLWTVQDAPYNTPIGPAFLQAGEEMGYDIVDVNGEQ-QTGFGFYQFNMRRGSRSS 291

Query:   256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG 315
              +K++L+P   R NLHV   S V K++ DP +K+A GV+ +++G  ++V+A +EVI+S+G
Sbjct:   292 TAKSFLRPARLRPNLHVALFSHVTKVLTDPHTKRATGVQFIRDGRLQNVYATREVILSAG 351

Query:   316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVTKR 374
             A  SP L+MLSG+G  E L  +GIP+VQ L  VG NL +H+A   + F I+   S+V KR
Sbjct:   352 AIGSPHLMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAVGGIAFLIDYPISIVMKR 411

Query:   375 LLRQPIKTGVK 385
             ++   I T ++
Sbjct:   412 MVN--INTALR 420

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 7.4e-68, Sum P(2) = 7.4e-68
 Identities = 64/163 (39%), Positives = 101/163 (61%)

Query:    23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
             +YDFI+            RLSE P W+VLL+EAG  +    D+ +++H  Q    NW +K
Sbjct:    61 KYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYK 120

Query:    83 TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
             T P  + CL + NN+C WP+GK +GGS+++N  ++TRG   D++ W  LGN GWS+++VL
Sbjct:   121 TEPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVL 180

Query:   143 KYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFL 185
              YFKK+E   +P+ + + V    NG + V YS  +++++D F+
Sbjct:   181 PYFKKYEGSVVPDADENLV--GRNGPVKVSYSETRTRIADAFV 221

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 6.5e-49, Sum P(2) = 6.5e-49
 Identities = 51/127 (40%), Positives = 76/127 (59%)

Query:    23 EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
             +YDFI+            RL+EV +WKVLL+EAG +  I T+ V      QF+ ++W + 
Sbjct:    57 DYDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFVAWHMATQFSEWDWQYH 116

Query:    83 TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
             + P   AC+ +    C WP+GK +GG+  +N  I+ RG   DF++WE  GN GW +D+VL
Sbjct:   117 SKPNGRACMAMKGESCHWPRGKMLGGTNGMNAMIYARGTRKDFDDWEERGNPGWGYDEVL 176

Query:   143 KYFKKFE 149
             K+F+K E
Sbjct:   177 KHFRKAE 183

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 272 (100.8 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    20 LLDEYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
             L   YDF++            RLSE P W+VL++EAG +  + ++L  +    Q T + W
Sbjct:    65 LSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVESELPALFFGLQHTNFTW 124

Query:    80 GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
              + T P   AC  + + +C WP+GK +GGS  +N  ++ RG   DF+ W ++G+TGWS+D
Sbjct:   125 NYFTEPSDEACQAMKDGRCYWPRGKMLGGSGGVNAMLYVRGNRRDFDGWAAMGSTGWSYD 184

Query:   140 DVLKYFKK 147
              V+ +F+K
Sbjct:   185 QVMPFFEK 192

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

UNIPROTKB|E1C003 CHDH "Choline dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
 Identities = 67/161 (41%), Positives = 89/161 (55%)

Query:   196 YHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
             Y    G L V        L   FL ++++ GY   D  N   + GF  +  TI  G+R +
Sbjct:   181 YRGGKGPLYVSRGKTNHPLHQAFLDATQQAGYPFTDDMNGYQQEGFGWMDMTIHQGKRWS 240

Query:   256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG 315
              + AYL P + R NL V + + V KI+      ++ GVE VKNG     FA KEVI+S G
Sbjct:   241 TASAYLHPALSRPNLSVTEKTLVTKILFQ--GTKSIGVEYVKNGQTEKAFASKEVILSGG 298

Query:   316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
             A NSP+LLMLSG+G  + L +LGIPVV  L  VG NL +H+
Sbjct:   299 AINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHL 339

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0019285 "glycine betaine biosynthetic process from choline" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 99/213 (46%), Positives = 137/213 (64%)

Query:   164 NTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSK 223
             N +G    E  PY  K   I +   L+ S   YH  NG L+V+Y+ Y+S+L   FLKS +
Sbjct:   156 NNSGWSYDELLPYFRKSERIGIPE-LYKSP--YHGRNGQLDVQYTDYRSQLLKAFLKSGR 212

Query:   224 ELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIII 283
             E+GY   D N  +  +GF+  Q+TI+NGRR + SKA+++P+++R NLH+   S V ++II
Sbjct:   213 EMGYEITDPNGEHL-MGFARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLII 271

Query:   284 DPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQ 343
             DPI+K A GVE VK   +  V ARKEVI+S+G   SP+LLMLSG+GP EHL E  I V+Q
Sbjct:   272 DPITKTATGVEFVKQRQRYVVRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQ 331

Query:   344 DLRVGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
             DL VG NL +H+  + L F +N + +V   RLL
Sbjct:   332 DLPVGYNLQDHITLNGLVFVVNDS-TVNDARLL 363

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 419 (152.6 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
 Identities = 77/188 (40%), Positives = 115/188 (61%)

Query:    15 YGNKRLLD-EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQ 73
             Y N  +LD EYDFI+            RLSE P W+VLL+EAG  +R+  D+ +++H+ Q
Sbjct:    50 YDNNVILDSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQ 109

Query:    74 FTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGN 133
                 NW ++T P  +ACL + NN+C WP+GK +GGS+++N  ++TRG   D++ WE+LGN
Sbjct:   110 LGEMNWKYRTQPSDHACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGN 169

Query:   134 TGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSD 193
              GWSF DVL YFKK+E  ++P+   D  Y   NG + V Y  ++SK+++ F+        
Sbjct:   170 PGWSFKDVLPYFKKYEGSSVPDAEED--YVGRNGPVKVSYVNWRSKIAEAFVDAAQ-QDG 226

Query:   194 TVYHNTNG 201
               Y + NG
Sbjct:   227 LKYRDYNG 234

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

TIGR_CMR|SPO_A0386 SPO_A0386 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 259 (96.2 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
 Identities = 66/168 (39%), Positives = 95/168 (56%)

Query:   196 YHNTNGLLNVEYSPYK-SKLSDIFLKSSKELGYT-NIDYNNPNTKIGFSIVQSTIKNGRR 253
             +   NG L+V         L   F+ +  EL +  N D+N   T+ G    Q+T K G R
Sbjct:   136 FRGDNGPLHVASMERDLHPLCQDFIAAGGELQFPHNPDFNGA-TQEGVGTYQNTAKGGLR 194

Query:   254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVS 313
             M+A++AYL+P + RTNL V   +   +++ +   K+A GV   +NG  R+V AR+EVI+S
Sbjct:   195 MSAARAYLRPALRRTNLRVETGALAERVLFE--GKRAVGVSYRQNGQVRTVRARREVILS 252

Query:   314 SGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSAL 360
              GA NSP+LL LSG+GP   L + G+ VV  L  VG NL +H+    L
Sbjct:   253 GGAINSPQLLQLSGIGPAHLLQDKGVEVVHALDGVGRNLQDHLCIDHL 300

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	385
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-88
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	2e-82
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	9e-69
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	5e-54
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	5e-38
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	2e-18
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	2e-04
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	6e-04
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	6e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	8e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.001
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.002

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  277 bits (712), Expect = 1e-88
 Identities = 129/340 (37%), Positives = 186/340 (54%), Gaps = 53/340 (15%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLV----LISHYYQFTPYN 78
           EYD+II+GAG  GCV+A+RLSE P   VLL+EAG  D  +   +     ++   Q   YN
Sbjct: 5   EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
           W ++T P+ +    + N +   P+GK +GGS+ ING ++ RG   D++ W  L G  GWS
Sbjct: 65  WAYETEPEPH----MNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWS 120

Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           + D L YFKK E  +  E   D  Y   +G L+V                          
Sbjct: 121 YADCLPYFKKAETRDGGE---DD-YRGGDGPLSV-------------------------- 150

Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGY--TNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
            T G       P  + L   F+++  + GY  T+ D N    + GF  +  T+ NGRR +
Sbjct: 151 -TRG------KPGTNPLFQAFVEAGVQAGYPRTD-DLNGYQQE-GFGPMDRTVTNGRRWS 201

Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG 315
           A++AYL P + R NL ++ ++   +I+ +   K+A GVE  + G + +  AR+EVI+S+G
Sbjct: 202 AARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYERGGGRETARARREVILSAG 259

Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           A NSP+LL LSG+GP EHL ELGIPVV DL  VG+NL +H
Sbjct: 260 AINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDH 299

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  261 bits (668), Expect = 2e-82
 Identities = 122/363 (33%), Positives = 184/363 (50%), Gaps = 48/363 (13%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHY--YQFTPYNWG 80
           EYD++IVG+G  G V+A RLS+     VL++EAG  DR     +  ++        Y+WG
Sbjct: 7   EYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWG 65

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFD 139
           F+T P+      L   +  WP+GK +GGS+ ING ++ RG P DF+ W    G  GW +D
Sbjct: 66  FRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYD 121

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           DVL YFK+ E                                   L VG  +  T +H  
Sbjct: 122 DVLPYFKRAED---------------------------------LLGVGGQDLRT-WHGG 147

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKA 259
            G L V      + ++  F+++ ++LG+      N   + GF     TI NGRR +A++A
Sbjct: 148 GGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARA 207

Query: 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAF 317
           YLKP + R NL ++  +RV +I+++    +A GVE+     G   +  A +EV++++GA 
Sbjct: 208 YLKPALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAI 265

Query: 318 NSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
           NSPKLL+LSG+GP +HL E GI VV  L  VG NL +H+    + F   +  +     L 
Sbjct: 266 NSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPTNDSVLSLF 324

Query: 377 RQP 379
            + 
Sbjct: 325 SKL 327

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  225 bits (575), Expect = 9e-69
 Identities = 115/337 (34%), Positives = 166/337 (49%), Gaps = 50/337 (14%)

Query: 25  DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLV----LISHYYQFTPYNWG 80
           D+II+G G  G V+A RLSE  S  VL++EAG  D  +  L+     +++      YNW 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNTGWSFD 139
           ++T P+ +    + N +    +GK +GGS+ ING I+ RG P D+ +W +  G   W + 
Sbjct: 61  YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           D L Y+K+ E                                        F  +  Y   
Sbjct: 117 DCLPYYKRLETT--------------------------------------FGGEKPYRGH 138

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKA 259
           +G + V   P  + L   F+++  E GY      N   + GF  + ST+ NGRR++A++A
Sbjct: 139 DGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARA 198

Query: 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS 319
           YL P + R NL V   + V KI  +    +A GVE  K G K    A KEVI+S+GA NS
Sbjct: 199 YLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEHTEANKEVILSAGAINS 256

Query: 320 PKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
           P+LL LSG+G  EHL ELGI     L  VG+NL +H+
Sbjct: 257 PQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHL 293

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  185 bits (471), Expect = 5e-54
 Identities = 104/339 (30%), Positives = 156/339 (46%), Gaps = 58/339 (17%)

Query: 25  DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDL-VLISHYYQF-----TPYN 78
           D ++VG G  GCVVA RLSE PS  V ++EAG   R  + L   ++   +      +P  
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSF 138
           W +            P       +G+ +GGS  +NG  F R  P DF+ W      GWS+
Sbjct: 62  WRYGVELTDG-----PRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSW 113

Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           DDVL +F+  E     +L+ D   H T G + V  +                        
Sbjct: 114 DDVLPHFRAIET----DLDFDGPLHGTAGPIPVRRTA----------------------- 146

Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNN---PNTKIGFSIVQSTIKNGRRMT 255
                  E       +S  F+ ++   G+  I   N   P+   G   V   +  GRR++
Sbjct: 147 -------ELDG----ISAAFVAAALGAGFGWIADLNGSGPDAPTGVGAVPLNVDGGRRVS 195

Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG 315
            + AYL P + R NL V  ++RVV+I+      +A GVE++ +G  R++ A + V++ +G
Sbjct: 196 TAVAYLLPALKRPNLTVEADTRVVRILFS--GTRAVGVEVLGDGGPRTLRADR-VVLCAG 252

Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
           A  S  LL+LSG+GP E L   GI VV DL VG + ++H
Sbjct: 253 AVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGSDFVDH 291

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score =  135 bits (343), Expect = 5e-38
 Identities = 72/273 (26%), Positives = 107/273 (39%), Gaps = 72/273 (26%)

Query: 91  LGLPNNQ-CLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKF 148
            G  N +  + P G  VGG + +N +   R      +EW S  G  GW +DD L Y  K 
Sbjct: 11  AGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV 70

Query: 149 ERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYS 208
           E                 G L V                                     
Sbjct: 71  E-----------------GPLGVTTKG--------------------------------- 80

Query: 209 PYKSKLSDIFLKSSKELGY--TNIDYNNP-NTKIGFSIVQSTIKNGRRMTASKAYLKPII 265
             +S L+   LK+++ELGY    +  N+      GF  +      G + + ++ +L+P +
Sbjct: 81  IEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLGC--PTGAKQSTARTWLRPAL 138

Query: 266 DRTNLHVIKNSRVVKIIIDPISKQAKGVE--LVKNGHKRSVFARKEVIVSSGAFNSPKLL 323
           +R NL ++  ++  KIII     +A GVE      G KR + A KEV+V++GA N+P LL
Sbjct: 139 ER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLL 197

Query: 324 MLSGVGPREHLTELGIPVVQDLRVGDNLMEHVA 356
           + SG+G   H             VG NL  H  
Sbjct: 198 LRSGLGKNPH------------PVGKNLQLHPV 218

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 82/330 (24%)

Query: 24  YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKT 83
           YD+I+VG G  GC +A  LS+  ++ VLL+E G     F +   +S    F   + G   
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVP--FGN-ANVSFLENF---HIGLAD 107

Query: 84  TPQKNACLG-LPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
           T   +A    +  +  +  + + +GG T IN   ++R       +       GW    V 
Sbjct: 108 TSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVN 161

Query: 143 KYFKKFER--INIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTN 200
           + +   ER  ++ P++                 +P+++ L D                  
Sbjct: 162 ESYPWVERQIVHWPKV-----------------APWQAALRD------------------ 186

Query: 201 GLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNN-PNTKIGFSIVQSTIKNGRRMTASKA 259
            LL V  SP+               G+T   Y++   TK+G +I       GRR TA  A
Sbjct: 187 SLLEVGVSPFN--------------GFT---YDHVYGTKVGGTIFDEF---GRRHTA--A 224

Query: 260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV---KNGHKRSVF----ARKEVIV 312
            L    +   L V+ ++ V KI+ D   K+ +   ++   +NG++   F       E+I+
Sbjct: 225 ELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIIL 284

Query: 313 SSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
           S+GA  SP++L+LSG+GP++ L +  IPVV
Sbjct: 285 SAGAIGSPQMLLLSGIGPKKELKKHKIPVV 314

Length = 587

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          D +++G G+ G   A+ L+      V L+E GD
Sbjct: 1  DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
           EYD +IVGAG  G   A RL++     VL++E G E  
Sbjct: 2  MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG 39

Length = 396

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIE 54
           +YD +I+G G+ G   A+ LSE  P   V L+E
Sbjct: 2  MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35

Length = 429

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 28 IVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          IVGAG+ G V A+ L++     VL++E  D
Sbjct: 1  IVGAGLSGLVAAYLLAKR-GKDVLVLEKRD 29

Length = 66

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN 318
           AYL+ +  R  L +  ++RV  +  D       G  +V+     +V A   V+ ++GAF+
Sbjct: 86  AYLEDLARRYGLPIRLSTRVTAVERD------GGRFVVRLTDGETVRADY-VVDATGAFS 138

Query: 319 SPKLLMLSG 327
            PK     G
Sbjct: 139 VPKPPGFPG 147

Length = 202

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          + D +I+G G+ G   A+ L+E     V ++EAG+
Sbjct: 4  KMDVVIIGGGIVGLSAAYYLAERG-ADVTVLEAGE 37

Length = 387

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 25 DFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDE 58
          D +IVGAG+ G ++A RL +  P  +VLLI+AG  
Sbjct: 1  DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPG 35

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 11 EEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE---AGDEDRIFTDL 65
              +   R   +YD IIVG  + G V+A  LS+    KVL++E       DRI  +L
Sbjct: 21 SRLRFKPARTNYDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDLFSKPDRIVGEL 77

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PLN02785	587	Protein HOTHEAD	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.97
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.56
PRK07121	492	hypothetical protein; Validated	99.56
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.55
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.52
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.52
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.52
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.51
PRK08274	466	tricarballylate dehydrogenase; Validated	99.51
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.5
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.49
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.43
PRK06175	433	L-aspartate oxidase; Provisional	99.41
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.39
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.39
PLN02815	594	L-aspartate oxidase	99.38
COG2081	408	Predicted flavoproteins [General function predicti	99.38
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.37
PRK07395	553	L-aspartate oxidase; Provisional	99.37
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PRK07804	541	L-aspartate oxidase; Provisional	99.36
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.34
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.34
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.34
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.34
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.33
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.33
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.33
PRK12839	572	hypothetical protein; Provisional	99.32
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.32
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.31
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.31
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.3
COG0579	429	Predicted dehydrogenase [General function predicti	99.29
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.29
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.29
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.28
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.27
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.27
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.27
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.27
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.26
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.25
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.25
PRK08275	554	putative oxidoreductase; Provisional	99.25
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.24
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.24
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.24
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.24
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.23
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.21
PRK09077	536	L-aspartate oxidase; Provisional	99.2
PRK08071	510	L-aspartate oxidase; Provisional	99.19
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.19
PRK07512	513	L-aspartate oxidase; Provisional	99.19
PRK05257	494	malate:quinone oxidoreductase; Validated	99.19
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.18
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.18
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.17
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.17
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.16
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.15
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.14
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.14
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.14
PLN02661	357	Putative thiazole synthesis	99.11
PRK08401	466	L-aspartate oxidase; Provisional	99.08
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.08
PRK10157	428	putative oxidoreductase FixC; Provisional	99.07
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.07
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.04
KOG2820|consensus	399		99.02
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.99
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.98
KOG0042|consensus	680		98.98
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.97
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.97
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.96
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.95
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.95
PRK10015	429	oxidoreductase; Provisional	98.92
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.84
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.84
COG3573	552	Predicted oxidoreductase [General function predict	98.83
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.83
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.82
KOG2415|consensus	621		98.81
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.81
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.75
PRK06185	407	hypothetical protein; Provisional	98.73
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.72
KOG1298|consensus	509		98.72
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.71
PRK07208	479	hypothetical protein; Provisional	98.7
KOG2844|consensus	856		98.68
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.67
PRK06370	463	mercuric reductase; Validated	98.64
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.62
KOG4254|consensus	561		98.62
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.62
PRK08244	493	hypothetical protein; Provisional	98.62
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.6
KOG2404|consensus	477		98.6
PLN02985	514	squalene monooxygenase	98.59
KOG2853|consensus	509		98.58
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.58
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.56
PRK06184	502	hypothetical protein; Provisional	98.54
KOG2665|consensus	453		98.52
PRK06847	375	hypothetical protein; Provisional	98.52
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.5
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.49
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.48
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.48
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.48
PRK06126	545	hypothetical protein; Provisional	98.46
PRK07045	388	putative monooxygenase; Reviewed	98.45
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.44
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.42
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.42
PLN02697	529	lycopene epsilon cyclase	98.41
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK11445	351	putative oxidoreductase; Provisional	98.39
PRK08163	396	salicylate hydroxylase; Provisional	98.38
PRK07190	487	hypothetical protein; Provisional	98.37
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.37
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.36
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.33
PRK07538	413	hypothetical protein; Provisional	98.31
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.3
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.29
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.28
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.26
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.23
KOG1399|consensus	448		98.21
PLN02487	569	zeta-carotene desaturase	98.21
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.21
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.19
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.18
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.16
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.11
PRK09126	392	hypothetical protein; Provisional	98.1
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.09
PRK08013	400	oxidoreductase; Provisional	98.08
PRK06116	450	glutathione reductase; Validated	98.08
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.07
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.07
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.07
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.06
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.06
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.05
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.02
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.02
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.01
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.99
PTZ00058	561	glutathione reductase; Provisional	97.98
KOG0029|consensus	501		97.98
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.98
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.97
KOG2852|consensus	380		97.96
PLN02463	447	lycopene beta cyclase	97.96
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.94
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.94
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.94
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.93
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.92
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.91
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.91
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.9
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.9
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.89
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.89
PTZ00367	567	squalene epoxidase; Provisional	97.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.88
PRK09897	534	hypothetical protein; Provisional	97.88
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.87
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.87
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.86
PLN02546	558	glutathione reductase	97.85
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.85
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.85
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.84
PRK06834	488	hypothetical protein; Provisional	97.83
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.83
PLN02268	435	probable polyamine oxidase	97.83
PRK07236	386	hypothetical protein; Provisional	97.83
TIGR02053	463	MerA mercuric reductase. This model represents the	97.81
PRK08294	634	phenol 2-monooxygenase; Provisional	97.81
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.8
PRK14694	468	putative mercuric reductase; Provisional	97.79
PRK07233	434	hypothetical protein; Provisional	97.79
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.78
PRK13748	561	putative mercuric reductase; Provisional	97.77
COG3349	485	Uncharacterized conserved protein [Function unknow	97.77
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.76
PTZ00052	499	thioredoxin reductase; Provisional	97.75
PRK07588	391	hypothetical protein; Provisional	97.74
PRK06753	373	hypothetical protein; Provisional	97.74
PLN02576	496	protoporphyrinogen oxidase	97.73
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.73
PRK06996	398	hypothetical protein; Provisional	97.71
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.69
PLN02507	499	glutathione reductase	97.69
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.68
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.66
PLN02568	539	polyamine oxidase	97.63
PRK10262	321	thioredoxin reductase; Provisional	97.6
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.6
PRK14727	479	putative mercuric reductase; Provisional	97.57
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.57
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.56
PRK05868	372	hypothetical protein; Validated	97.55
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.55
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.52
PLN02676	487	polyamine oxidase	97.52
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.51
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.48
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.48
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.45
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.45
KOG2311|consensus	679		97.43
PRK06475	400	salicylate hydroxylase; Provisional	97.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.41
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.41
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.37
PRK12831	464	putative oxidoreductase; Provisional	97.36
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.33
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.32
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.31
KOG2614|consensus	420		97.3
PRK07846	451	mycothione reductase; Reviewed	97.29
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.28
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.28
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.27
PLN02612	567	phytoene desaturase	97.27
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.24
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.23
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.22
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.21
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.21
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.21
PLN02529	738	lysine-specific histone demethylase 1	97.18
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.17
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.13
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.11
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.1
PLN02852	491	ferredoxin-NADP+ reductase	97.09
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.06
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.04
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.04
KOG0685|consensus	498		97.03
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.03
KOG4716|consensus	503		96.99
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.92
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.87
PTZ00188	506	adrenodoxin reductase; Provisional	96.86
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.86
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.82
KOG3855|consensus	481		96.81
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.8
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.8
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.79
KOG2960|consensus	328		96.79
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.79
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.79
KOG1335|consensus	506		96.78
TIGR02053	463	MerA mercuric reductase. This model represents the	96.76
PLN03000	881	amine oxidase	96.75
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.73
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.72
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.65
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.64
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.64
KOG1276|consensus	491		96.63
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.62
PLN02976	1713	amine oxidase	96.53
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.49
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.38
PRK10262	321	thioredoxin reductase; Provisional	96.37
PRK13984	604	putative oxidoreductase; Provisional	96.35
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.34
KOG0405|consensus	478		96.26
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.26
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.21
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.1
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.02
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.01
PRK12831	464	putative oxidoreductase; Provisional	95.84
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.73
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	95.71
KOG1800|consensus	468		95.61
KOG4405|consensus	547		95.54
KOG1439|consensus	440		95.52
KOG0399|consensus	2142		95.3
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.11
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.04
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.99
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.94
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.93
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.86
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.83
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	94.75
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.63
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.5
KOG2403|consensus	642		94.19
KOG2755|consensus	334		94.16
KOG3851|consensus	446		94.14
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.08
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.82
KOG1336|consensus	478		93.77
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.36
KOG0404|consensus	322		93.34
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.34
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.2
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	92.76
PRK07846	451	mycothione reductase; Reviewed	92.62
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	92.61
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.61
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	92.55
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.46
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	92.39
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.35
PRK06370	463	mercuric reductase; Validated	92.14
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.99
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.93
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.91
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.91
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	91.91
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	91.89
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	91.87
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	91.72
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	91.64
PRK14989	847	nitrite reductase subunit NirD; Provisional	91.55
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	91.35
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.25
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.08
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	90.86
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.8
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.8
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.74
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	90.7
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.67
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.57
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.48
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.47
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	90.35
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.3
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.3
PRK04148	134	hypothetical protein; Provisional	90.29
PRK06116	450	glutathione reductase; Validated	90.28
PRK07845	466	flavoprotein disulfide reductase; Reviewed	90.26
KOG3923|consensus	342		90.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	89.97
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.95
PTZ00058	561	glutathione reductase; Provisional	89.87
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.87
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	89.85
PLN02507	499	glutathione reductase	89.82
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	89.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.74
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	89.38
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.2
PLN02546	558	glutathione reductase	89.18
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.17
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.94
PRK13748	561	putative mercuric reductase; Provisional	88.85
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.77
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.75
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	88.59
PRK14694	468	putative mercuric reductase; Provisional	88.56
PRK12770	352	putative glutamate synthase subunit beta; Provisio	88.45
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.44
PRK14727	479	putative mercuric reductase; Provisional	88.31
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	88.27
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.27
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.25
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.0
PTZ00052	499	thioredoxin reductase; Provisional	87.85
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	87.84
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.81
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	87.76
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	87.61
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	87.55
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.54
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.3
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	87.21
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.2
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	87.08
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.04
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	86.84
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	86.79
PLN02612	567	phytoene desaturase	86.7
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.55
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	86.45
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.08
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	85.95
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.5
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	85.46
PRK07233	434	hypothetical protein; Provisional	85.16
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	85.13
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	85.03
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	84.85
PRK12548	289	shikimate 5-dehydrogenase; Provisional	84.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	84.25
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.25
PRK08328	231	hypothetical protein; Provisional	84.05
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	83.98
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.95
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	83.77
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	83.55
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	83.54
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	83.5
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	83.5
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	83.46
PLN02353	473	probable UDP-glucose 6-dehydrogenase	83.41
PRK11730	715	fadB multifunctional fatty acid oxidation complex	83.35
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	83.34
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	83.31
PRK07417	279	arogenate dehydrogenase; Reviewed	83.09
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	83.0
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	82.92
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	82.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	82.7
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	82.57
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.54
PRK08017	256	oxidoreductase; Provisional	82.5
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	82.31
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	82.07
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	81.97
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	81.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	81.89
PRK09496	453	trkA potassium transporter peripheral membrane com	81.86
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	81.78
PRK08223	287	hypothetical protein; Validated	81.75
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	81.73
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	81.64
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	81.39
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	81.18
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	81.11
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	80.92
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	80.72
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	80.72
PRK06223	307	malate dehydrogenase; Reviewed	80.46
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	80.44
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	80.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	80.22

>KOG1238|consensus

Probab=100.00  E-value=5.2e-56  Score=437.50  Aligned_cols=321  Identities=45%  Similarity=0.817  Sum_probs=291.6

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccccCCCCccccccccCCccccCCCCCee
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQC   98 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (385)
                      ....+||+||||||.|||++|.+|+|.+..+|||||+|+......+.|.....++.+.++|.|.+.|+...|..+.+..+
T Consensus        53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c  132 (623)
T KOG1238|consen   53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC  132 (623)
T ss_pred             ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence            35678999999999999999999999888999999999988777788877777888999999999999999999999999


Q ss_pred             eecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417         99 LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS  178 (385)
Q Consensus        99 ~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
                      .|+||+++||+|.+|+|++.|.+..||+.|.+.++.+|+|+++++||+++|........                     
T Consensus       133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~---------------------  191 (623)
T KOG1238|consen  133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPE---------------------  191 (623)
T ss_pred             ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcc---------------------
Confidence            99999999999999999999999999999999999999999999999999987654322                     


Q ss_pred             cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhH
Q psy10417        179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASK  258 (385)
Q Consensus       179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~  258 (385)
                                    ..++++..++..+....+..+....+.++.+++|....|+||.. ..|+.....+.+++.|.++..
T Consensus       192 --------------~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~-~tg~~~l~~t~~~g~R~s~~~  256 (623)
T KOG1238|consen  192 --------------LTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGER-HTGASLLQYTIRNGIRVSLAK  256 (623)
T ss_pred             --------------cCcccccCCcceeccccccCchhhHhHHhHHhcCCCccCCCCcc-ccchhhhhccccCCEEEEehh
Confidence                          34478888888888888889999999999999998889999998 899998899999999999999


Q ss_pred             Hhhhhhcc-CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh
Q psy10417        259 AYLKPIID-RTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE  336 (385)
Q Consensus       259 ~~l~~~~~-~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~  336 (385)
                      +|+.++.. ++|+.+..++.|++|.+|..+.+++||++.+. ++.++++|+|+||||||||+||+|||+|||||.++|++
T Consensus       257 a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~  336 (623)
T KOG1238|consen  257 AYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKK  336 (623)
T ss_pred             hhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHh
Confidence            99998877 88999999999999999988889999999988 89999999999999999999999999999999999999


Q ss_pred             cCCCcccccc-chhhhhhccCCCceEEEEcCCccchhhhhh
Q psy10417        337 LGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVTKRLL  376 (385)
Q Consensus       337 ~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~  376 (385)
                      +|||++.++| ||+||+||+.. .+.+-++++..+++.++.
T Consensus       337 ~gIpvv~dLP~VG~nLqDH~~~-~~~~~~~~~~~~~~~~~~  376 (623)
T KOG1238|consen  337 LGIPVVLDLPGVGQNLQDHPMN-PGFVFSTNPVELSLIRLV  376 (623)
T ss_pred             cCCCeeccCccccccccccccc-ceeeecCCCccccccccc
Confidence            9999999999 99999999997 555555556666654443

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=7.2e-51  Score=416.34  Aligned_cols=304  Identities=41%  Similarity=0.741  Sum_probs=251.9

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC---Cccccchhhhcc-ccCCCCccccccccCCccccCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED---RIFTDLVLISHY-YQFTPYNWGFKTTPQKNACLGLPN   95 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~---~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   95 (385)
                      +..+|||||||||++|+++|.+||+.+|.+|||||+|+..   ......|..... .....++|.+.+.|++.    ..+
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~   77 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNN   77 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCC
Confidence            3567999999999999999999999449999999999753   222233332211 22345678777777654    445


Q ss_pred             CeeeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccC
Q psy10417         96 NQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYS  174 (385)
Q Consensus        96 ~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  174 (385)
                      +.+.+.+|++|||+|.+|++++.|+.+.||+.|+.+ +..+|+|++|+|||+++|++...                    
T Consensus        78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~--------------------  137 (560)
T PRK02106         78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG--------------------  137 (560)
T ss_pred             CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC--------------------
Confidence            678899999999999999999999999999999987 78899999999999999987631                    


Q ss_pred             CccccchhhhhhccccCCCCcccCCCcceEeeeC-CCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCc
Q psy10417        175 PYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYS-PYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGR  252 (385)
Q Consensus       175 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~  252 (385)
                                        ...+++..|++.+..+ ....+..+.+.++++++|++. .+.++.. +.|++.|...|..+.
T Consensus       138 ------------------~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~  198 (560)
T PRK02106        138 ------------------EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGR  198 (560)
T ss_pred             ------------------CccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCE
Confidence                              2235667788877654 455778888999999999986 4666665 788888888888999


Q ss_pred             ccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChh
Q psy10417        253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPRE  332 (385)
Q Consensus       253 r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~  332 (385)
                      |+++..+|+.++.++.|++|+++|.|++|+++  +++++||++.+.+..+++.+.|+||||||+++||+||++|||||.+
T Consensus       199 R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~  276 (560)
T PRK02106        199 RWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAE  276 (560)
T ss_pred             EEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChH
Confidence            99999999988877899999999999999998  6799999998765444554447999999999999999999999999


Q ss_pred             hhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCcc
Q psy10417        333 HLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFS  369 (385)
Q Consensus       333 ~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~  369 (385)
                      +|+++||+++.++| ||+||+||+.+ .+.|.+++++.
T Consensus       277 ~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~~  313 (560)
T PRK02106        277 HLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPVS  313 (560)
T ss_pred             HHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCcc
Confidence            99999999999999 99999999996 78888877644

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=5.7e-50  Score=407.53  Aligned_cols=298  Identities=39%  Similarity=0.651  Sum_probs=250.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCCCC---ccccchhhhcc-ccCCCCccccccccCCccccCCCCCeee
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDEDR---IFTDLVLISHY-YQFTPYNWGFKTTPQKNACLGLPNNQCL   99 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
                      ||||||||++|+++|.+||++ | .+|||||+|+...   .....|..... ...+.++|.+.+.|++.    ..++.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~   75 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG   75 (532)
T ss_pred             CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence            899999999999999999998 6 7999999998532   22233332111 22344678877777664    4567789


Q ss_pred             ecCcceecccccccCcEEecCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417        100 WPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS  178 (385)
Q Consensus       100 ~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~-~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
                      +.+|++|||+|.+|++++.|+.+.||+.|+. .+..+|+|++|+|||+++|.+++.                        
T Consensus        76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~------------------------  131 (532)
T TIGR01810        76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG------------------------  131 (532)
T ss_pred             eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC------------------------
Confidence            9999999999999999999999999999987 577899999999999999987652                        


Q ss_pred             cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccchh
Q psy10417        179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMTAS  257 (385)
Q Consensus       179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~~~  257 (385)
                                    ...+++..|++.+..++...+..+.+.++++++|++. .+.++.. ..+++.|...|..|.|+++.
T Consensus       132 --------------~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~  196 (532)
T TIGR01810       132 --------------EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAA  196 (532)
T ss_pred             --------------CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHH
Confidence                          2246777889888877777888899999999999986 4566555 66888887788899999999


Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhc
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTEL  337 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~  337 (385)
                      .+|+.++.++.|++|+++|.|++|+++  +++++||++.+.+...++.+.|+||||||+++||+||++|||||.++|+++
T Consensus       197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~  274 (532)
T TIGR01810       197 RAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLREL  274 (532)
T ss_pred             HHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhc
Confidence            999988777889999999999999998  689999999876554455444799999999999999999999999999999


Q ss_pred             CCCcccccc-chhhhhhccCCCceEEEEcCCcc
Q psy10417        338 GIPVVQDLR-VGDNLMEHVAYSALTFGINKTFS  369 (385)
Q Consensus       338 gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~  369 (385)
                      ||+++.++| ||+||+||+.+ .+.|.++++..
T Consensus       275 gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~  306 (532)
T TIGR01810       275 GIEPRIHLPGVGENLQDHLEV-YVQHACKQPVS  306 (532)
T ss_pred             CCCeEeeCCccccchhhcccc-eeEEEecCCcc
Confidence            999999999 99999999996 88888876543

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=3.4e-51  Score=387.30  Aligned_cols=289  Identities=42%  Similarity=0.724  Sum_probs=223.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhh-hccccCCCCccccccccCCccccCCCCCeeeecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLI-SHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQ  102 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (385)
                      |||||||||++|+++|.+||++++.+|||||+|+........+.. ........+.|.+...++..    .++..+.+++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence            899999999999999999999844799999999987544322211 12223445667666665544    5667788889


Q ss_pred             cceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccccch
Q psy10417        103 GKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLS  181 (385)
Q Consensus       103 g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
                      |++|||+|.+|++++.|+.+.||+.|... +...|+|++|.+||+++|++..++                          
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~--------------------------  130 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS--------------------------  130 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--------------------------
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--------------------------
Confidence            99999999999999999999999999987 667799999999999999887753                          


Q ss_pred             hhhhhccccCCCCcccCCCcceEe-eeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccchhHH
Q psy10417        182 DIFLKVGLFNSDTVYHNTNGLLNV-EYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMTASKA  259 (385)
Q Consensus       182 ~~~~~~g~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~  259 (385)
                                  ...++..+++.+ .......+....+.++++++|++. .+.+... .+|++.+...|+.+.|+++..+
T Consensus       131 ------------~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~  197 (296)
T PF00732_consen  131 ------------SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATT  197 (296)
T ss_dssp             ------------GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHH
T ss_pred             ------------ccccccccccccccccCCCCHHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhc
Confidence                        234555667776 444555677788999999999984 4555544 5565554445999999999999


Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCe---EEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGH---KRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE  336 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~---~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~  336 (385)
                      ||.++.++.|++|+++|.|++|++++++++++||++.+.+.   .+.+.+ |+||||||+++||+||++||||+...|++
T Consensus       198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~  276 (296)
T PF00732_consen  198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDA  276 (296)
T ss_dssp             HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHH
T ss_pred             ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHH
Confidence            99988888899999999999999976688999999997533   345555 79999999999999999999999999999


Q ss_pred             cCCCccccccchhhhhhccC
Q psy10417        337 LGIPVVQDLRVGDNLMEHVA  356 (385)
Q Consensus       337 ~gi~~~~~~pvG~~l~dh~~  356 (385)
                      .||+++.++|||+||||||.
T Consensus       277 ~gi~~~~~lpVG~nl~dH~~  296 (296)
T PF00732_consen  277 LGIPVVVDLPVGRNLQDHPV  296 (296)
T ss_dssp             TTHHHSEE-TTTECEB--EE
T ss_pred             cCCCceeeCcchhchhcccC
Confidence            99999999999999999983

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-45  Score=370.98  Aligned_cols=306  Identities=39%  Similarity=0.712  Sum_probs=255.9

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc-cccchhhhccccCC-CCccccccccCCccccCCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI-FTDLVLISHYYQFT-PYNWGFKTTPQKNACLGLPNN   96 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   96 (385)
                      .+..+|||||||||.+|+++|.+|++. |++|+|||+|+.... ....|......... ..+|.+.+.+++.    ..++
T Consensus         3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~-g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r   77 (542)
T COG2303           3 EMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGR   77 (542)
T ss_pred             cccCCCCEEEECCCchhHHHHHHhcCC-CCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCc
Confidence            456789999999999999999999965 999999999986433 33444444333333 6778888877763    6778


Q ss_pred             eeeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCC
Q psy10417         97 QCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSP  175 (385)
Q Consensus        97 ~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (385)
                      .+.|+++++|||+|.+|++++.|..+.||+.|.+. +..+|.|++++|||+++|++.+....                  
T Consensus        78 ~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~------------------  139 (542)
T COG2303          78 ELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQ------------------  139 (542)
T ss_pred             cccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCC------------------
Confidence            89999999999999999999999999999999876 67999999999999999997764211                  


Q ss_pred             ccccchhhhhhccccCCC-CcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcc
Q psy10417        176 YKSKLSDIFLKVGLFNSD-TVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRR  253 (385)
Q Consensus       176 ~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r  253 (385)
                                       + ...++..+|+.+.......+....+.++..++|++. .++++.. ..|++.|...+..|.|
T Consensus       140 -----------------~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r  201 (542)
T COG2303         140 -----------------DLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRR  201 (542)
T ss_pred             -----------------CCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeE
Confidence                             1 336777788887776555788899999999999987 5677766 5666666555559999


Q ss_pred             cchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCe--EEEEEeCcEEEEcCCCcccHHHHHHcCCCCh
Q psy10417        254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGH--KRSVFARKEVIVSSGAFNSPKLLMLSGVGPR  331 (385)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~--~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~  331 (385)
                      +++..+|+.++.+++|++|++++.|++|+++  +++++||++..++.  .....+.++||||||+|+||+||++||+|+.
T Consensus       202 ~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~  279 (542)
T COG2303         202 WSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPA  279 (542)
T ss_pred             eechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCch
Confidence            9999999999899999999999999999999  78999999986432  2344444699999999999999999999999


Q ss_pred             hhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCc
Q psy10417        332 EHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTF  368 (385)
Q Consensus       332 ~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~  368 (385)
                      +.+..+|+.++.++| ||+||+||+.+ .+.+..+...
T Consensus       280 ~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~  316 (542)
T COG2303         280 DHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPT  316 (542)
T ss_pred             hhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCcc
Confidence            999999999999999 99999999996 8888887765

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=6e-40  Score=334.29  Aligned_cols=276  Identities=26%  Similarity=0.423  Sum_probs=206.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccccCCCCccccccccCCccccCCCCCeeee
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLW  100 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (385)
                      ...|||||||+|.+||++|.+|++  +.+|||||+|+............ .+.....+|.+.+.++..    ..++.+.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~----~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF----ISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc----cCCCceec
Confidence            457999999999999999999999  47999999998532111111111 122334578777766643    45677889


Q ss_pred             cCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccccc
Q psy10417        101 PQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKL  180 (385)
Q Consensus       101 ~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
                      ++|++|||+|.+|+|.+.|.++.||+.      .+|+|+.+.+||++.|+.+..                          
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~--------------------------  173 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH--------------------------  173 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--------------------------
Confidence            999999999999999999999999953      579999999999999864311                          


Q ss_pred             hhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCCC--CCCceeeeeeccc-cCCcccchh
Q psy10417        181 SDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNP--NTKIGFSIVQSTI-KNGRRMTAS  257 (385)
Q Consensus       181 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~g~~~~~~~~-~~g~r~~~~  257 (385)
                                                 .+...+....+.+++.++|++.  +++.  +...|.......+ ..+.|.++.
T Consensus       174 ---------------------------~~~~~~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa  224 (587)
T PLN02785        174 ---------------------------WPKVAPWQAALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAA  224 (587)
T ss_pred             ---------------------------CCCcChHHHHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHH
Confidence                                       0012345678889999999964  2211  1011211111111 357777766


Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEEe-CCeEEEE----EeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVK-NGHKRSV----FARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~~-~g~~~~i----~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      . ++ +..++.|++|+++|.|++|++++.+  ++++||++.+ +|..+++    +++|+||||||+++||+||++|||||
T Consensus       225 ~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp  302 (587)
T PLN02785        225 E-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGP  302 (587)
T ss_pred             H-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCC
Confidence            5 44 4667889999999999999998522  4899999986 4554443    24579999999999999999999999


Q ss_pred             hhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417        331 REHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       331 ~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~  367 (385)
                      .++|+++||+++.|+| ||+||+|||.. .+.+..+.+
T Consensus       303 ~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~  339 (587)
T PLN02785        303 KKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAP  339 (587)
T ss_pred             HHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCC
Confidence            9999999999999999 99999999996 777877654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.97  E-value=9e-30  Score=255.25  Aligned_cols=277  Identities=14%  Similarity=0.149  Sum_probs=170.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccc---------c----chhhhccccC----CC----------
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFT---------D----LVLISHYYQF----TP----------   76 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~---------~----~p~~~~~~~~----~~----------   76 (385)
                      |||||||+|++|+++|+.|+++ |++|+|||+|.......         .    ...+...+.+    .+          
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            7999999999999999999998 99999999988664110         0    0000000000    00          


Q ss_pred             ---CccccccccCCccccCCC-------CCee-eecCcceecccccccCcEEecCChhhHHHHHhcCCCCC--ChhhHHH
Q psy10417         77 ---YNWGFKTTPQKNACLGLP-------NNQC-LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW--SFDDVLK  143 (385)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~-------~~~~-~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w--~~~~l~~  143 (385)
                         ..|...  |. .......       ...+ ...+-+.|||+|.||++.++|+++++. .|   -..+|  +|+||+|
T Consensus        80 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g---~~~dWPI~y~eL~P  152 (544)
T TIGR02462        80 LDPTAWSAS--IE-SFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK---LSDDAAEDDAEWDR  152 (544)
T ss_pred             CCccccccC--CC-cceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC---CCCCCCCCHHHHHH
Confidence               011100  00 0000000       0001 123457899999999999999999642 11   14688  9999999


Q ss_pred             HHHHHhhccCCCCCcccccccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHH
Q psy10417        144 YFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSK  223 (385)
Q Consensus       144 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  223 (385)
                      ||.++|++++++..                                     .+.   .+.      ......+.+.+.+.
T Consensus       153 yY~~Ae~~~gv~g~-------------------------------------~~~---~~~------~~~~~~~~~~~~~~  186 (544)
T TIGR02462       153 LYTKAESLIGTSTD-------------------------------------QFD---ESI------RHNLVLRKLQDEYK  186 (544)
T ss_pred             HHHHHHHHhCCCCC-------------------------------------cCC---Ccc------cchhHHHHHHHHhc
Confidence            99999999986421                                     000   000      01122223333222


Q ss_pred             HcCC-CCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhc----cCCCeEEEeCcEEEEEEEcCCC-CeEEEEEEEe
Q psy10417        224 ELGY-TNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPII----DRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVK  297 (385)
Q Consensus       224 ~~G~-~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~----~~~g~~i~~~~~V~~i~~~~~~-~~v~GV~~~~  297 (385)
                        |. ...  ..+   ..+..+  .|+.+.++++..+.+..+.    ++.|++|++++.|++|++++++ ++|++|++.+
T Consensus       187 --g~~~~~--~~P---lA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d  257 (544)
T TIGR02462       187 --GQRDFQ--PLP---LACHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRD  257 (544)
T ss_pred             --cccccc--cCc---hhhhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEE
Confidence              22 111  111   111111  3455666665444454333    4778999999999999998644 6899999987


Q ss_pred             --CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417        298 --NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       298 --~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~  367 (385)
                        +++.++++|+ .||||||+++||+||++|+++....  ..|+......+ ||||||||+.. .+.+.+.++
T Consensus       258 ~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~  326 (544)
T TIGR02462       258 LLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE  326 (544)
T ss_pred             CCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence              5788899995 8999999999999999999874221  11221110024 99999999985 677766654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.56  E-value=8.7e-14  Score=142.30  Aligned_cols=59  Identities=20%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      |...+++.|++|++++.|++|+.+  +++|+||.+..+++...+.|+|.||||+|+|....
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~  281 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM  281 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence            333456689999999999999976  58999999887777778888779999999999654

>PRK07121 hypothetical protein; Validated

Probab=99.56  E-value=2.7e-13  Score=137.22  Aligned_cols=62  Identities=23%  Similarity=0.410  Sum_probs=49.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      |...+++.|++|+++++|++|+.++ +++++||++.++++.+.++|+|.||||+|++....-|
T Consensus       183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em  244 (492)
T PRK07121        183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREM  244 (492)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHH
Confidence            4445567799999999999999874 4799999998777777899955899999998854333

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.55  E-value=1.2e-13  Score=142.10  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS-PKLLM  324 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t-p~LL~  324 (385)
                      .+...++..|++|+++|.|++|+.|+ +++|+||.+..+++.+.++|++.||||+|+|.. +.++.
T Consensus       218 ~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        218 RLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            34455677899999999999999975 479999999887888889997689999999995 44443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.52  E-value=3.1e-13  Score=137.30  Aligned_cols=64  Identities=20%  Similarity=0.447  Sum_probs=51.3

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS-PKLLM  324 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t-p~LL~  324 (385)
                      .++..+.++.|++|++++.|++|+.+  +++|+||++..+++.++++|+|.||||||++.. +.++.
T Consensus       178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~  242 (513)
T PRK12837        178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA  242 (513)
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence            34444445569999999999999987  689999998877878889997689999999974 44443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.52  E-value=6.9e-13  Score=135.61  Aligned_cols=61  Identities=13%  Similarity=0.240  Sum_probs=49.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .+.+.|++++++++|++|..+  +++++||++.+  +++...|+|+ .||+|||+ ++..|+...|+
T Consensus       158 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~  220 (546)
T PRK11101        158 DAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL  220 (546)
T ss_pred             HHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence            345679999999999999987  67899999875  3555689995 79999996 67888776664

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.52  E-value=8.3e-14  Score=138.09  Aligned_cols=59  Identities=25%  Similarity=0.442  Sum_probs=46.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      +...+++.+++|++++.|++|+++  +++|+||++.  .+++.++++|+ .||||+|++.. .++
T Consensus       147 l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~  207 (417)
T PF00890_consen  147 LAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL  207 (417)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred             HHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence            334455678999999999999998  6799999999  67888899995 99999999998 444

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.51  E-value=2.5e-13  Score=139.13  Aligned_cols=61  Identities=20%  Similarity=0.363  Sum_probs=50.9

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      .|...+++.|++|++++.|++|+.+  +++|+||++..+++.+.++|++.||||+|+|....-
T Consensus       213 ~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~e  273 (557)
T PRK12844        213 RMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAE  273 (557)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHH
Confidence            3434556789999999999999987  689999999877878889996689999999997443

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.51  E-value=7.5e-13  Score=133.19  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=51.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      |...+++.|++|+++++|++|+.+  +++++||.+. .+++...+++ +.||||+|++.+.+.++..-.+
T Consensus       137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~  203 (466)
T PRK08274        137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWG  203 (466)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcC
Confidence            333456679999999999999987  6799999985 4455667899 5899999999887766665443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.50  E-value=5.5e-13  Score=128.50  Aligned_cols=60  Identities=28%  Similarity=0.443  Sum_probs=46.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +...+++.|++|+++++|++|..+  +++++||++.++    .++|+ .||+|+|+ +++.|+..+++
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g----~i~ad-~vV~a~G~-~s~~l~~~~~~  212 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDG----EIRAD-RVVLAAGA-WSPQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTE----EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred             hHHHHHHhhhhccccccccchhhc--cccccccccccc----ccccc-eeEecccc-cceeeeecccc
Confidence            333455679999999999999998  788999988654    58995 89999996 78888888765

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.49  E-value=9.6e-13  Score=133.48  Aligned_cols=55  Identities=22%  Similarity=0.405  Sum_probs=44.6

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      ..+++.|++|++++.|++|+.+  +++++||.+... ++...+.+ +.||||+|++...
T Consensus       198 ~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n  253 (506)
T PRK06481        198 KNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGAN  253 (506)
T ss_pred             HHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccC
Confidence            3455679999999999999876  689999998753 45667999 5899999998754

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.43  E-value=5.2e-12  Score=129.48  Aligned_cols=63  Identities=22%  Similarity=0.432  Sum_probs=51.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML  325 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~  325 (385)
                      |...+++.|++|++++.|++|+.+  +++|+||++..+++.+.++|++.||||+|+|.+..-|+.
T Consensus       214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence            334456789999999999999987  679999999877777889996679999999997554443

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.41  E-value=7e-12  Score=124.73  Aligned_cols=57  Identities=25%  Similarity=0.475  Sum_probs=45.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ++..+.++.|++|++++.|++|+.+  ++++.||.+.+++..+.+.| +.||||+|++..
T Consensus       134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~  190 (433)
T PRK06175        134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG  190 (433)
T ss_pred             HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence            3333334569999999999999887  57899988776666668999 589999999764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=9.4e-12  Score=127.78  Aligned_cols=52  Identities=13%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      .+.+.|++|+.++.|++|+.+  +++|+||.+.+  +++.+.+.| |.||||+|++.
T Consensus       145 ~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~  198 (566)
T PRK06452        145 RTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG  198 (566)
T ss_pred             HHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence            344569999999999999987  68999999875  456678999 69999999987

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.39  E-value=9.9e-12  Score=127.40  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..++||||||+|.+|+++|..++++ |.+|+||||++
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            4679999999999999999999998 99999999986

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.39  E-value=2.6e-11  Score=120.00  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +||||||+|++|+++|++|+++ |.+|+||||+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            5999999999999999999998 999999999874

>PLN02815 L-aspartate oxidase

Probab=99.38  E-value=1.2e-11  Score=127.13  Aligned_cols=55  Identities=11%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCC--eEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISK--QAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~--~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      +.+..|++|+.++.|++|+.+++++  +|+||.+.+  +++.+.+.| |.||||+|++..
T Consensus       165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~  223 (594)
T PLN02815        165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH  223 (594)
T ss_pred             HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence            3345699999999999999864344  499999864  577778899 699999999874

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.38  E-value=5.5e-12  Score=119.58  Aligned_cols=108  Identities=18%  Similarity=0.236  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE
Q psy10417        216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL  295 (385)
Q Consensus       216 ~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~  295 (385)
                      +.++..++.+|+++..-..     |.-.    |... +.+.....+...+++.|++|++++.|.+|..++   ..-.|.+
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~-----Gr~F----p~sd-kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~f~l~t  148 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDL-----GRMF----PDSD-KASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SGFRLDT  148 (408)
T ss_pred             HHHHHHHHhcCCeeEEccC-----ceec----CCcc-chHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ceEEEEc
Confidence            4567777888887643222     2211    1211 222222233345678899999999999999873   2222333


Q ss_pred             EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcc
Q psy10417        296 VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV  342 (385)
Q Consensus       296 ~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~  342 (385)
                      . +|+  +++|+ .+|||+|+-.-|++ =..|.| ...+++.|++++
T Consensus       149 ~-~g~--~i~~d-~lilAtGG~S~P~l-Gstg~g-y~iA~~~G~~I~  189 (408)
T COG2081         149 S-SGE--TVKCD-SLILATGGKSWPKL-GSTGFG-YPIARQFGHTIT  189 (408)
T ss_pred             C-CCC--EEEcc-EEEEecCCcCCCCC-CCCchh-hHHHHHcCCccc
Confidence            3 333  79996 79999999888864 112222 334455666554

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=6.4e-12  Score=129.40  Aligned_cols=54  Identities=7%  Similarity=0.137  Sum_probs=45.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+.+.|++|++++.|++|+.++ +++|+||.+.+  +++.+.+.| |.||||+|++..
T Consensus       152 ~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  207 (588)
T PRK08958        152 QNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR  207 (588)
T ss_pred             HhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence            3456799999999999999863 57999999853  577778999 599999999875

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.37  E-value=1.6e-11  Score=122.65  Aligned_cols=58  Identities=24%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      |...+++.|++|++++.|++|+.++ +++++||++.+. ++...+.+ +.||||+|++...
T Consensus       136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n  194 (439)
T TIGR01813       136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSN  194 (439)
T ss_pred             HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCC
Confidence            4445567799999999999999864 478999998754 44456777 5899999998863

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.37  E-value=4.7e-12  Score=129.39  Aligned_cols=53  Identities=21%  Similarity=0.426  Sum_probs=44.4

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ++.|++|++++.|++|+.++++++|+||.+.+++....+.| |.||||+|++..
T Consensus       146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~~  198 (553)
T PRK07395        146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGGQ  198 (553)
T ss_pred             hcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCcc
Confidence            45699999999999999874347999999887777777889 589999999753

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=2.4e-11  Score=126.22  Aligned_cols=53  Identities=13%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+++.|++|++++.|++|+.+  +++|+||.+.+  +++...+.| |.||||+|++..
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~  233 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN  233 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence            445679999999999999987  57999999875  466678899 589999999886

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.36  E-value=2.7e-11  Score=123.87  Aligned_cols=57  Identities=18%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++.+++|+.++.|++|+.++ +++|+||.+.+     .+....+.| |.||+|+|++..
T Consensus       150 L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~  211 (541)
T PRK07804        150 LDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ  211 (541)
T ss_pred             HHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence            4344556689999999999999874 46999998862     233457889 589999999773

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.34  E-value=2.1e-11  Score=125.64  Aligned_cols=60  Identities=13%  Similarity=0.335  Sum_probs=48.0

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      ..+++.|++|++++.|++|+.+  +++|+||.+.+.+....+.+++.||||+|++....-++
T Consensus       222 ~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~  281 (574)
T PRK12842        222 KSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI  281 (574)
T ss_pred             HHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence            3456789999999999999987  68999999887555557888668999999998544443

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=2.3e-11  Score=124.57  Aligned_cols=57  Identities=19%  Similarity=0.455  Sum_probs=45.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++.|++|++++.|++|+.++ +++++||.+.+  +++.+.+.| |.||||+|++..
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~  198 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ  198 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence            3334556899999999999999874 45699998765  566678999 589999999874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.34  E-value=6.5e-11  Score=121.98  Aligned_cols=60  Identities=22%  Similarity=0.386  Sum_probs=49.6

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      |...+++.|++|++++.|++|+.+  +++|+||.+..+++.+.+.|++.||||+|++....=
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e  286 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ  286 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence            333456789999999999999987  689999999877777789876689999999997533

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.34  E-value=3e-11  Score=124.47  Aligned_cols=61  Identities=15%  Similarity=0.269  Sum_probs=49.2

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      |...+++.|++|++++.|++|+.+  +++++||.+..++..+.++|++.||||+|++....-+
T Consensus       223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence            334556789999999999999987  6899999988766666788955899999999865444

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=3.1e-11  Score=124.31  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=44.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++.|++|++++.|++|+.+  ++++.||...+  +++...+.| |.||||+|++..
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~  198 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR  198 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence            333445679999999999999987  68999998653  566667899 589999999863

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.34  E-value=2e-11  Score=126.34  Aligned_cols=57  Identities=14%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+.+.|++|+.++.|++|+.++ +++|.||.+.+  +|+.+.+.| |.||||+|++..
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  230 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence            3334556799999999999999843 67999998754  577778999 589999999875

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.33  E-value=3.5e-11  Score=124.34  Aligned_cols=57  Identities=18%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++.|++|++++.|++|+.++ +++|+||.+.+  +|+.+.+.| |.||||+|++..
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  213 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR  213 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence            3334456799999999999999873 47999999853  577778999 589999999985

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.33  E-value=4.7e-11  Score=123.75  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=45.4

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      .+.+.|++|+.++.|++|+.++ +++|.||.+.+  +|+.+.+.| |.||||+|++...
T Consensus       196 ~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~  252 (635)
T PLN00128        196 QAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA  252 (635)
T ss_pred             HHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence            3445799999999999998864 47999999864  577778999 5899999999853

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.33  E-value=6.1e-11  Score=122.31  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             CeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        269 NLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       269 g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      +++++.++.|++|+.++ +++|+||.+.+  +++.+.+.| |.||||+|++..
T Consensus       151 ~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence            48999999999999863 57999999875  456667888 599999999885

>PRK12839 hypothetical protein; Provisional

Probab=99.32  E-value=3.3e-11  Score=123.67  Aligned_cols=58  Identities=16%  Similarity=0.244  Sum_probs=45.4

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      ..+++.|++|+++|.|++|+.++ +++|+||.+.+.+...++.+.|.||||+|+|....
T Consensus       222 ~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~  279 (572)
T PRK12839        222 RSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDV  279 (572)
T ss_pred             HHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCH
Confidence            34556799999999999998764 57999999876444455666578999999998633

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.32  E-value=2.3e-11  Score=134.14  Aligned_cols=53  Identities=17%  Similarity=0.426  Sum_probs=44.5

Q ss_pred             CCeEEEeCcEEEEEEEcCC----C---CeEEEEEEEe----CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        268 TNLHVIKNSRVVKIIIDPI----S---KQAKGVELVK----NGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~----~---~~v~GV~~~~----~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      .|++|++++.|++|+.+++    +   ++|+||.+.+    +|+...+.| |.||||+|+|....
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~  623 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH  623 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence            5999999999999998742    2   3899999985    577778999 68999999999753

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.31  E-value=7.1e-11  Score=118.76  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             CC--eEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        268 TN--LHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       268 ~g--~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .|  ++|+++++|++|..+  ++....|.+.+ |   +++|+ .||+|||+ ++..|+..+|++
T Consensus       228 ~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~-G---~i~A~-~VVvaAG~-~S~~La~~~Gi~  283 (497)
T PTZ00383        228 PGKKISINLNTEVLNIERS--NDSLYKIHTNR-G---EIRAR-FVVVSACG-YSLLFAQKMGYG  283 (497)
T ss_pred             cCCCEEEEeCCEEEEEEec--CCCeEEEEECC-C---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence            45  899999999999876  44555565543 3   68995 79999997 688899999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.31  E-value=3.7e-11  Score=118.74  Aligned_cols=60  Identities=25%  Similarity=0.323  Sum_probs=43.7

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ..+.+.|++++.+++|++|..++ ++++.+|.+.+ |   .+.++ .||+|||++ ++.++...|+.
T Consensus       191 ~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~-g---~i~a~-~vVvaagg~-~~~l~~~~g~~  250 (407)
T TIGR01373       191 RGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTR-G---FIGAK-KVGVAVAGH-SSVVAAMAGFR  250 (407)
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCC-c---eEECC-EEEECCChh-hHHHHHHcCCC
Confidence            34556799999999999997642 45677776654 3   68895 799999984 55666655543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.30  E-value=7e-11  Score=117.05  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSG  327 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg  327 (385)
                      .+++.|++|++++.|++|..+  ++++++|.+.. +   +++++ .||+|+|+ ++..++..-|
T Consensus       210 ~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~~-~---~~~a~-~VV~a~G~-~~~~l~~~~g  265 (416)
T PRK00711        210 MAEQLGVKFRFNTPVDGLLVE--GGRITGVQTGG-G---VITAD-AYVVALGS-YSTALLKPLG  265 (416)
T ss_pred             HHHHCCCEEEcCCEEEEEEec--CCEEEEEEeCC-c---EEeCC-EEEECCCc-chHHHHHHhC
Confidence            455679999999999999877  56777776543 3   68885 79999997 5566665444

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.29  E-value=1.2e-10  Score=113.68  Aligned_cols=122  Identities=16%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             cceEeeeCCCCchHHHHHHHHHHHcCCCC-C----------CCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCC
Q psy10417        201 GLLNVEYSPYKSKLSDIFLKSSKELGYTN-I----------DYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTN  269 (385)
Q Consensus       201 g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~----------~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g  269 (385)
                      +.+-+...+......+.+.+.+.+.|+.. .          +++-.+.+.+..+.+...... ......++.. .+..+|
T Consensus        90 g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~-~~~~t~~l~e-~a~~~g  167 (429)
T COG0579          90 GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVD-PGELTRALAE-EAQANG  167 (429)
T ss_pred             CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEc-HHHHHHHHHH-HHHHcC
Confidence            56666666666666666777777777762 1          111111133333333221111 1112233343 445569


Q ss_pred             eEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        270 LHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       270 ~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      ++|.+|++|++|..+++ | ++-+.+.. |++. ++| |.||.|||. .+.+|+.++|+.+
T Consensus       168 ~~i~ln~eV~~i~~~~d-g-~~~~~~~~-g~~~-~~a-k~Vin~AGl-~Ad~la~~~g~~~  222 (429)
T COG0579         168 VELRLNTEVTGIEKQSD-G-VFVLNTSN-GEET-LEA-KFVINAAGL-YADPLAQMAGIPE  222 (429)
T ss_pred             CEEEecCeeeEEEEeCC-c-eEEEEecC-CcEE-EEe-eEEEECCch-hHHHHHHHhCCCc
Confidence            99999999999998753 2 33343433 4443 999 589999994 8899999999876

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.29  E-value=5.7e-11  Score=123.71  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+.+.|++|+.++.|++|+.+  +++|.||.+.+  +|+.+.+.| |.||||+|++..
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~  221 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR  221 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence            333455679999999999999987  68999999875  677778899 589999999874

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.29  E-value=4.8e-11  Score=122.93  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=44.1

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ..+++.|++|+.++.|++|+.+  +++++||.+.+  +++...+.| |.||||+|++..
T Consensus       137 ~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~  192 (566)
T TIGR01812       137 EQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR  192 (566)
T ss_pred             HHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence            3344569999999999999987  68999998864  466667899 589999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.28  E-value=6.4e-11  Score=118.96  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      +.++||||||+|++|+++|++|+++ +|.+|+|||++.
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4468999999999999999999996 589999999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.27  E-value=1.3e-10  Score=120.23  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      +.|++|+.++.|++|+.+  +++++||.+.+  +++.+.+.| +.||||+|++.
T Consensus       145 ~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~  195 (608)
T PRK06854        145 ALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA  195 (608)
T ss_pred             cCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence            345999999999999987  57999998643  466668899 58999999876

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.27  E-value=3e-10  Score=111.13  Aligned_cols=34  Identities=44%  Similarity=0.686  Sum_probs=32.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      |||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            7999999999999999999998 999999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.27  E-value=1.7e-10  Score=119.06  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=44.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+.+.|++++.++.|++|+.++ ++++.||.+.+  +++...+.| |.||||+|++..
T Consensus       157 ~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  212 (591)
T PRK07057        157 QNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR  212 (591)
T ss_pred             HHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence            3446799999999999999864 57999999864  466667888 589999999874

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.27  E-value=6e-11  Score=122.17  Aligned_cols=52  Identities=15%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+..|+++++++.|++|+.+  ++++.||...+  +++...+.| |.||||+|++..
T Consensus       144 ~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~  197 (582)
T PRK09231        144 LKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR  197 (582)
T ss_pred             hcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence            34468999999999999987  68999998753  566678999 599999999774

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.26  E-value=1.4e-10  Score=120.38  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=40.1

Q ss_pred             eEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        270 LHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       270 ~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ++|+.++.|++|+.+  ++++.||...+  +++.+.+.| +.||||+|++..
T Consensus       166 v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence            999999999999987  67999998754  566678999 589999999764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.26  E-value=5.5e-12  Score=123.75  Aligned_cols=78  Identities=24%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIP  340 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~  340 (385)
                      |...+++.|++|+++++|.+|..+  ++.+..|++. ++  ..+.++ .||||+|+...|++ --+|. -...+++.|+.
T Consensus       115 L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~-~~--~~~~a~-~vILAtGG~S~p~~-GS~G~-gy~~a~~lGh~  186 (409)
T PF03486_consen  115 LLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK-NG--GEYEAD-AVILATGGKSYPKT-GSDGS-GYRIAKKLGHT  186 (409)
T ss_dssp             HHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEET-TT--EEEEES-EEEE----SSSGGG-T-SSH-HHHHHHHTT--
T ss_pred             HHHHHHHcCCEEEeCCEeeeeeec--CCceeEeecc-Cc--ccccCC-EEEEecCCCCcccc-CCCcH-HHHHHHHCCCc
Confidence            434556789999999999999988  5677778773 22  278995 79999999887763 11111 13445667777


Q ss_pred             cccccc
Q psy10417        341 VVQDLR  346 (385)
Q Consensus       341 ~~~~~p  346 (385)
                      ++...|
T Consensus       187 i~~~~P  192 (409)
T PF03486_consen  187 ITPPYP  192 (409)
T ss_dssp             EEEEEE
T ss_pred             EecCCC
Confidence            665554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00551 nadB L-aspartate oxidase

Probab=99.25  E-value=2.4e-10  Score=115.60  Aligned_cols=56  Identities=16%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             hhhhccC-CCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDR-TNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~-~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++ .|++|++++.|++|+.+  +++++||.+.+.+....+.+ +.||||+|++..
T Consensus       134 L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~  190 (488)
T TIGR00551       134 LVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence            3333443 79999999999999987  57899998887555567889 589999999874

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.25  E-value=1.8e-10  Score=113.46  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ..+++.|++++.++.|+++..+  ++.+ .|++. ++   ++.++ .||+|+|+ +++.++...|+.
T Consensus       157 ~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~~-~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~  214 (393)
T PRK11728        157 ELIQARGGEIRLGAEVTALDEH--ANGV-VVRTT-QG---EYEAR-TLINCAGL-MSDRLAKMAGLE  214 (393)
T ss_pred             HHHHhCCCEEEcCCEEEEEEec--CCeE-EEEEC-CC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence            3455679999999999999876  3443 45443 23   68895 79999996 678888777764

>PRK08275 putative oxidoreductase; Provisional

Probab=99.25  E-value=1.8e-10  Score=118.16  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .|...+++.|++|++++.|++|+.++ ++++.||.+.+  +++...+.| |.||||+|++..
T Consensus       142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~  201 (554)
T PRK08275        142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCccc
Confidence            34444556799999999999999863 46899998764  566667889 589999999853

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.24  E-value=1.8e-10  Score=119.47  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSG  327 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg  327 (385)
                      .+.+.|++|+.+++|++|..++.++++++|.+.+  +++.+++.++ .||+|||+ ++..|+...+
T Consensus       241 ~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g  304 (627)
T PLN02464        241 TAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD  304 (627)
T ss_pred             HHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence            4556799999999999998763236899998865  4556678995 89999996 6788887665

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.24  E-value=2.8e-10  Score=113.26  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCh---hhhhhcCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPR---EHLTELGI  339 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~---~~l~~~gi  339 (385)
                      +...|.++++.++|+++..+  ++ +.||++.+  +|+.+.++| +.||.|||+ ++-.++...+..+.   ......|+
T Consensus       174 A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~skGs  248 (532)
T COG0578         174 AAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGP-WVDEILEMAGLEQSPHIGVRPSKGS  248 (532)
T ss_pred             HHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCc-cHHHHHHhhcccCCCCccceeccce
Confidence            34679999999999999998  56 99999996  478999999 589999995 78888888866542   33446777


Q ss_pred             Cccccc
Q psy10417        340 PVVQDL  345 (385)
Q Consensus       340 ~~~~~~  345 (385)
                      .++++.
T Consensus       249 HlVv~~  254 (532)
T COG0578         249 HLVVDK  254 (532)
T ss_pred             EEEecc
Confidence            766554

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.24  E-value=1.9e-10  Score=118.61  Aligned_cols=51  Identities=24%  Similarity=0.376  Sum_probs=42.3

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      .+..|++++.++.|++|+.+  +++++||.+.+  +++...+.| |.||||+|++.
T Consensus       148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~  200 (577)
T PRK06069        148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG  200 (577)
T ss_pred             HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence            34469999999999999987  67999998764  566667899 58999999985

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.24  E-value=4.5e-10  Score=113.09  Aligned_cols=62  Identities=21%  Similarity=0.256  Sum_probs=44.3

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+++.|++|+++++|++|..++ ++.+. |.+.  +.++..+++|+ .||+|||+ ++.+|+...|+.
T Consensus       187 ~a~~~Gv~i~~~t~V~~i~~~~-~~~v~-v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~  250 (483)
T TIGR01320       187 YLVQNGTTIRFGHEVRNLKRQS-DGSWT-VTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP  250 (483)
T ss_pred             HHHhCCCEEEeCCEEEEEEEcC-CCeEE-EEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence            4455799999999999998753 23332 3332  23444468995 89999997 678888888875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.23  E-value=2.6e-10  Score=117.28  Aligned_cols=51  Identities=14%  Similarity=0.310  Sum_probs=43.2

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      +..|++++.++.|++|+.+  +++|.||...+  +|+...+.| |.||||+|++..
T Consensus       144 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence            4468999999999999987  67999998764  566778999 599999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.21  E-value=3.1e-10  Score=117.27  Aligned_cols=51  Identities=18%  Similarity=0.317  Sum_probs=42.9

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ..|++|++++.|++|+.++ +++|+||.+.+  +++...+.| |.||||+|++..
T Consensus       145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence            4589999999999999863 57999999875  466678899 589999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.20  E-value=4.8e-10  Score=114.60  Aligned_cols=55  Identities=15%  Similarity=0.313  Sum_probs=44.3

Q ss_pred             hccCCCeEEEeCcEEEEEEEcC----CCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDP----ISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~----~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      +.+++|++|++++.|++|+.++    ++++++||.+.+  +++...+.| +.||||+|++..
T Consensus       148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~  208 (536)
T PRK09077        148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK  208 (536)
T ss_pred             HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence            3345699999999999999763    137999999874  466778999 589999999874

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.19  E-value=6.1e-10  Score=113.12  Aligned_cols=49  Identities=22%  Similarity=0.450  Sum_probs=41.9

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .|++|++++.|++|+.+  ++++.||.+.+ +++.+.++| +.||||+|++..
T Consensus       142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence            58999999999999887  67999999876 456667889 589999999874

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.19  E-value=6.7e-10  Score=114.63  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .|...+++.|++|++++.|++|+.+++  +++|+||...+  +++.+.+.| |.||||+|++..
T Consensus       145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  207 (583)
T PRK08205        145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence            344445567999999999999998731  27999998853  566668899 589999999873

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.19  E-value=3.4e-10  Score=115.06  Aligned_cols=50  Identities=16%  Similarity=0.371  Sum_probs=42.2

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      ++.|++|+.++.|++|+.+  +++++||.+.+.+....+.| +.||||+|++.
T Consensus       148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~  197 (513)
T PRK07512        148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPA-RAVVLATGGIG  197 (513)
T ss_pred             hCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence            3458999999999999877  67999999887665567889 58999999986

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.19  E-value=1.1e-09  Score=110.46  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             hccCCC-eEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        264 IIDRTN-LHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       264 ~~~~~g-~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+++.| ++|+++++|++|..++ +++++ |.+.+  .|+..+++|+ .||+|||+ ++..|+..+|+.
T Consensus       192 ~a~~~Ggv~i~~~teV~~I~~~~-dg~~~-v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~  256 (494)
T PRK05257        192 YLQKQGNFELQLGHEVRDIKRND-DGSWT-VTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP  256 (494)
T ss_pred             HHHhCCCeEEEeCCEEEEEEECC-CCCEE-EEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence            344444 8999999999998753 34333 33332  3433468995 89999997 678888888875

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.18  E-value=5.5e-10  Score=108.76  Aligned_cols=33  Identities=39%  Similarity=0.535  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |||+|||+|++|+++|++|+++ |.+|+|||++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            6999999999999999999998 99999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.18  E-value=1.2e-09  Score=106.66  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+|||+|||+|++|+++|++|+++ |.+|+|||++..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            469999999999999999999998 999999999853

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.17  E-value=7.5e-10  Score=114.06  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCC-CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPI-SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ....+++|+.++.|++|+.+++ +++|.||.+.+  +++.+.+.| |.||||+|++..
T Consensus       136 l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  192 (614)
T TIGR02061       136 AKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAVN  192 (614)
T ss_pred             HHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCcccc
Confidence            3345689999999999998742 27999999854  566778999 589999999863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.17  E-value=8e-10  Score=119.34  Aligned_cols=49  Identities=20%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .++++.+++.+++|+.+  +++++||.+.+  +|+.+.+.| |.||||+|++..
T Consensus       156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~  206 (897)
T PRK13800        156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR  206 (897)
T ss_pred             CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence            47999999999999987  68999999764  577778999 699999999863

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.16  E-value=1.3e-09  Score=110.74  Aligned_cols=40  Identities=28%  Similarity=0.589  Sum_probs=36.2

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+.+.|||||||||++|+.+|++||++ |++|+|||+++..
T Consensus         2 ~~~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~   41 (508)
T PRK12266          2 TMMETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLA   41 (508)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            356789999999999999999999999 9999999998653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.15  E-value=3.9e-10  Score=104.26  Aligned_cols=35  Identities=37%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++||+|||+|++|+++|++|+++ |++|+|||+..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~   58 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKL   58 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            468999999999999999999998 99999999864

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.14  E-value=1.1e-09  Score=111.24  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .+.+.|++++.+++|++|..+  ++ ..+|.+.++ |++++++| +.||.|+|+ ++..++.
T Consensus       164 ~a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~-wa~~l~~  220 (502)
T PRK13369        164 DAAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGP-WVTDVIH  220 (502)
T ss_pred             HHHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCc-cHHHHHh
Confidence            345689999999999999876  34 345766654 56678999 489999996 6677765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.14  E-value=3.5e-09  Score=106.30  Aligned_cols=68  Identities=25%  Similarity=0.261  Sum_probs=45.9

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE--EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL--VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~--~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      ++...+.++.|++|+++++|++|..++ ++.++ |.+  ...++..+++|+ .||+|||+ ++.+|+..+|+.+
T Consensus       189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~  258 (497)
T PRK13339        189 KLAKHLESHPNAQVKYNHEVVDLERLS-DGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE  258 (497)
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence            344433345699999999999998763 23332 332  223333368895 89999997 7788999988753

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.14  E-value=3.5e-10  Score=104.28  Aligned_cols=36  Identities=39%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+|||+|||+|++|+++|+.|+++ |.+|+||||...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~   55 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA   55 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            379999999999999999999998 999999999753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PLN02661 Putative thiazole synthesis

Probab=99.11  E-value=6.7e-10  Score=105.69  Aligned_cols=56  Identities=18%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE------eC-C----eEEEEEeCcEEEEcCCCcc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV------KN-G----HKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~------~~-g----~~~~i~a~k~VVlAaGa~~  318 (385)
                      ++..+.++.|++|+.++.|++|+.+  ++++.||.+.      .. +    ....++| |.||+|+|.-.
T Consensus       178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g  244 (357)
T PLN02661        178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence            4444556689999999999999998  6899999863      11 1    2347899 58999999543

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.08  E-value=2.1e-09  Score=108.15  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +||||||+|.+|+++|.+++++ |.+|+||||+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            6999999999999999999998 99999999974

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.08  E-value=5.3e-09  Score=103.85  Aligned_cols=41  Identities=27%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      |+++|||||||+|.+||++|..|+++ |++|++||+.++.+.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGG   41 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCc
Confidence            56789999999999999999999998 999999999987743

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.07  E-value=1.8e-09  Score=107.41  Aligned_cols=36  Identities=47%  Similarity=0.691  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ++|||||||+|++|+++|+.||++ |++|+||||+..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~   39 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS   39 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence            469999999999999999999998 999999999864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.07  E-value=3.4e-09  Score=105.72  Aligned_cols=61  Identities=10%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      |...+++.|++|++++.|++|+.++++++++||....++  ..+.+ |.||||+|++....-++
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence            434556789999999999999876324789998875332  47888 58999999998655433

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.04  E-value=3.4e-09  Score=93.11  Aligned_cols=36  Identities=42%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||+|||+|++|+++|++||++ |+||+|+|+...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLS   51 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence            479999999999999999999999 999999999643

>KOG2820|consensus

Probab=99.02  E-value=6e-09  Score=96.50  Aligned_cols=62  Identities=21%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      .+...+++.|+.++.+..|..+.+.+..+..++|.+.++.   .+.| |.+|+++|+ ++.+||..|
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~a-kkiI~t~Ga-Wi~klL~~~  219 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHA-KKIIFTVGA-WINKLLPTS  219 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeec-ceEEEEecH-HHHhhcCcc
Confidence            3444566789999999999999987556777788887753   5778 479999998 677787764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.99  E-value=2.5e-08  Score=100.60  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=46.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEEeCC--eEEEEEeCcEEEEcCCCcccH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVKNG--HKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~~~g--~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      |...++..|++|+++|+|++|..+.++  ++|+||++..+|  +...+.+++.||+++|++...
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence            334566789999999999999986223  789999998643  344567778999999998643

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.98  E-value=1.9e-09  Score=104.75  Aligned_cols=57  Identities=25%  Similarity=0.471  Sum_probs=45.8

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCC-eEEEEEEEeCC-eEEEEEeCcEEEEcCCCcc
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISK-QAKGVELVKNG-HKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~-~v~GV~~~~~g-~~~~i~a~k~VVlAaGa~~  318 (385)
                      +++..+.+++|++|+.++.+.+|+.+  ++ .+.||.+.+.+ +...++| +.||||+|++.
T Consensus       138 ~L~~~v~~~p~I~v~e~~~a~~li~~--~~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g  196 (518)
T COG0029         138 ALLKKVRNRPNITVLEGAEALDLIIE--DGIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG  196 (518)
T ss_pred             HHHHHHhcCCCcEEEecchhhhhhhc--CCceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence            34444556799999999999999998  45 56699998754 5778999 58999999876

>KOG0042|consensus

Probab=98.98  E-value=9.3e-10  Score=107.27  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=59.5

Q ss_pred             CceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCC
Q psy10417        238 KIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       238 ~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaG  315 (385)
                      .+|......+..+.+|.....++   -+.+.|.+++.+.+|.+|+.++ ++++.|++++|  .|+++.|+| |.||-|+|
T Consensus       210 L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATG  284 (680)
T KOG0042|consen  210 LKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNATG  284 (680)
T ss_pred             ceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCCC
Confidence            55655554444455555544332   2346799999999999999987 46899999997  589999999 68999999


Q ss_pred             CcccHHHHHH
Q psy10417        316 AFNSPKLLML  325 (385)
Q Consensus       316 a~~tp~LL~~  325 (385)
                      .|. ..|..+
T Consensus       285 pfs-DsIr~M  293 (680)
T KOG0042|consen  285 PFS-DSIRKM  293 (680)
T ss_pred             Ccc-HHHHhh
Confidence            754 555544

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.98  E-value=4.6e-10  Score=111.63  Aligned_cols=62  Identities=26%  Similarity=0.427  Sum_probs=0.0

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +...+...|++|++++.|.+++.+  ++++++|.+...+...+|+| +.||-|+|-   ..|+.++|.
T Consensus        96 l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A-~~~IDaTG~---g~l~~~aG~  157 (428)
T PF12831_consen   96 LDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRA-KVFIDATGD---GDLAALAGA  157 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc--cccccccccccccccccccc-ccccccccc---ccccccccc
Confidence            444445689999999999999998  78999999986444778999 589999993   577778874

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.97  E-value=3.3e-09  Score=104.56  Aligned_cols=37  Identities=46%  Similarity=0.751  Sum_probs=34.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+|||||||+|+||++||+.||++ |.+|+||||+...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            579999999999999999999999 9999999998754

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.97  E-value=6.5e-09  Score=105.80  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=42.4

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      ..+..+++++.+..|++|+.++ ++.+.||...+  +++.+.+++ |.||+|+|++.
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g  202 (562)
T COG1053         148 LLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG  202 (562)
T ss_pred             HHHhhcchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence            3344678999999999999885 34488888774  577778888 68999999988

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.96  E-value=2e-08  Score=98.31  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +.++||||||+|++|+++|++|+++ |.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence            5679999999999999999999999 9999999997643

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.95  E-value=8.6e-09  Score=90.19  Aligned_cols=33  Identities=42%  Similarity=0.535  Sum_probs=31.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +.||+|||+|++|++||++||++ |.||+|+||.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~   62 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK   62 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence            67999999999999999999999 9999999985

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.95  E-value=9.3e-09  Score=107.91  Aligned_cols=34  Identities=35%  Similarity=0.656  Sum_probs=32.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||||||+|++|+++|++|+++ |.+|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            57999999999999999999999 99999999975

>PRK10015 oxidoreductase; Provisional

Probab=98.92  E-value=5.4e-09  Score=103.99  Aligned_cols=36  Identities=47%  Similarity=0.781  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ++|||||||+|++|+++|+.||++ |.+|+||||+..
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~   39 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS   39 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            469999999999999999999998 999999999864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.84  E-value=7e-09  Score=104.80  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=35.6

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      +.+||||||||.+|+++|..||++ |++|+||||......
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence            468999999999999999999999 999999999776643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.84  E-value=3e-08  Score=89.39  Aligned_cols=89  Identities=20%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhh-----------
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTE-----------  336 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~-----------  336 (385)
                      .+++|+++++|++|-..+  +.. -+...+++  ....++ .|||+.-+-+++.||--+..+-+..++.           
T Consensus       116 tdL~V~~~~rVt~v~~~~--~~W-~l~~~~g~--~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~  189 (331)
T COG3380         116 TDLTVVLETRVTEVARTD--NDW-TLHTDDGT--RHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW  189 (331)
T ss_pred             ccchhhhhhhhhhheecC--Cee-EEEecCCC--cccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence            579999999999998763  221 13332222  245664 7999999999999986553333332332           


Q ss_pred             ---cCCCcccccc-chhhhhhccCCCceEEE
Q psy10417        337 ---LGIPVVQDLR-VGDNLMEHVAYSALTFG  363 (385)
Q Consensus       337 ---~gi~~~~~~p-vG~~l~dh~~~~~~~~~  363 (385)
                         .|.+...+.| =|-.+.+|+.. .+...
T Consensus       190 s~~lg~~q~l~~P~~G~~vdg~~la-Wla~d  219 (331)
T COG3380         190 SAVLGYPQPLDRPWPGNFVDGHPLA-WLARD  219 (331)
T ss_pred             HHHhcCCccCCCCCCCcccCCCeee-eeecc
Confidence               5777677788 78777778863 55544

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.83  E-value=2.8e-08  Score=91.92  Aligned_cols=63  Identities=22%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe---C----C--------eEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK---N----G--------HKRSVFARKEVIVSSGAFNSPKLLML  325 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~---~----g--------~~~~i~a~k~VVlAaGa~~tp~LL~~  325 (385)
                      +..+..+..+++...++|.+|+..  +++++||.-.-   +    |        ..+++.|. .||+++|+|.-.+-|.+
T Consensus       159 ~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelVR  235 (552)
T COG3573         159 LREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELVR  235 (552)
T ss_pred             HHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHHH
Confidence            444455778999999999999998  78999987431   1    1        13678884 89999999986665554


Q ss_pred             c
Q psy10417        326 S  326 (385)
Q Consensus       326 S  326 (385)
                      -
T Consensus       236 r  236 (552)
T COG3573         236 R  236 (552)
T ss_pred             h
Confidence            3

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.83  E-value=1.8e-08  Score=102.47  Aligned_cols=35  Identities=37%  Similarity=0.645  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+|||||||||+||+.||..+|+. |.+|+|+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~   36 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHN   36 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHc-CCcEEEEecc
Confidence            4579999999999999999999998 9999999986

>TIGR02730 carot_isom carotene isomerase

Probab=98.82  E-value=5.7e-08  Score=98.57  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=45.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      |...+++.|++|++++.|++|..+  ++++.+|.+.++.   ++.++ .||+|++...+-..|+
T Consensus       235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~g~---~~~ad-~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLADGE---KIYAK-RIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeCCCC---EEEcC-EEEECCChHHHHHHhC
Confidence            444566789999999999999987  6789999887543   57885 7999999876665443

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2415|consensus

Probab=98.81  E-value=2e-08  Score=95.34  Aligned_cols=83  Identities=13%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             hhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-----C-------eEEEEEeCcEEEEcCCCcc--cHH
Q psy10417        256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-----G-------HKRSVFARKEVIVSSGAFN--SPK  321 (385)
Q Consensus       256 ~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-----g-------~~~~i~a~k~VVlAaGa~~--tp~  321 (385)
                      -...||...++.-|++|..+..+.++++++ ++.|.||.+.|-     |       +-..+.| |..|.|-|.-.  |-+
T Consensus       184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskq  261 (621)
T KOG2415|consen  184 QLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQ  261 (621)
T ss_pred             HHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHH
Confidence            456688777888999999999999999987 689999998762     1       2246788 57888887654  667


Q ss_pred             HHHHcCCCChhhhhhcCCC
Q psy10417        322 LLMLSGVGPREHLTELGIP  340 (385)
Q Consensus       322 LL~~Sgig~~~~l~~~gi~  340 (385)
                      ++.+-++....+.+..||.
T Consensus       262 i~kkf~Lr~n~e~qtYglG  280 (621)
T KOG2415|consen  262 IIKKFDLRENCEPQTYGLG  280 (621)
T ss_pred             HHHHhCcccCCCcceeccc
Confidence            7777666554555555553

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.81  E-value=1.1e-07  Score=94.26  Aligned_cols=39  Identities=33%  Similarity=0.466  Sum_probs=35.4

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+...+||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   52 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA   52 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence            445579999999999999999999998 999999999864

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.75  E-value=9.5e-08  Score=97.14  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=44.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      +...+++.|++|++++.|++|..+  ++++++|++.++.   .+.|+ .||+|++...+...|+
T Consensus       225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~---~~~ad-~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGE---RLDAD-AVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCC---EEECC-EEEECCcHHHHHHHhc
Confidence            333456679999999999999987  6788888876542   57885 7999999766665554

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06185 hypothetical protein; Provisional

Probab=98.73  E-value=1.2e-07  Score=93.82  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +..|++++.++.|+++..+  ++++++|.+...+...+++++ .||.|.|+. |. +-...|+.
T Consensus       120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~  178 (407)
T PRK06185        120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRAD-LVVGADGRH-SR-VRALAGLE  178 (407)
T ss_pred             hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence            3468999999999999987  578888887753333578994 899999964 43 44445654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.72  E-value=1.4e-06  Score=84.85  Aligned_cols=67  Identities=27%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      ++..+.+++|++|.++++|++|....+ ++. -|.+.  .+++...++| +-|++.||+ .+=.||..|||..
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W-~v~~~~~~~~~~~~v~a-~FVfvGAGG-~aL~LLqksgi~e  255 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGD-GRW-EVKVKDLKTGEKREVRA-KFVFVGAGG-GALPLLQKSGIPE  255 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCC-CCE-EEEEEecCCCCeEEEEC-CEEEECCch-HhHHHHHHcCChh
Confidence            344344567999999999999998753 432 23333  3567779999 599999998 6788999999853

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG1298|consensus

Probab=98.72  E-value=4.3e-08  Score=92.32  Aligned_cols=56  Identities=21%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             hhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       262 ~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      ..+...+|+++..+ .|.+|+.|  ++.++||+|.. .|++.+..|. .-|+|-|.|.+=|
T Consensus       155 ~ka~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSnlR  211 (509)
T KOG1298|consen  155 KKAASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSNLR  211 (509)
T ss_pred             HHHhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhHHHH
Confidence            33556789998775 68888777  67999999995 4677888995 8999999887654

>TIGR00275 flavoprotein, HI0933 family

Probab=98.71  E-value=3.2e-08  Score=97.66  Aligned_cols=32  Identities=31%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             EEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        27 iIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ||||+|++|+++|..|+++ |.+|+||||.+..
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccc
Confidence            6999999999999999998 9999999997643

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07208 hypothetical protein; Provisional

Probab=98.70  E-value=3.9e-07  Score=92.09  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=36.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      |.+..||||||+|++|+++|++|+++ |.+|+|+|+.+...
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G   40 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            35678999999999999999999998 99999999987664

>KOG2844|consensus

Probab=98.68  E-value=3.2e-07  Score=91.87  Aligned_cols=59  Identities=20%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             hhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       262 ~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      ..++++.|+.|+.+|.|++|...  .++..||++..+    .|++. .||-|||. +.-..-.++|+
T Consensus       194 a~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G----~iet~-~~VNaaGv-WAr~Vg~m~gv  252 (856)
T KOG2844|consen  194 ARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG----SIETE-CVVNAAGV-WAREVGAMAGV  252 (856)
T ss_pred             HHHHHhcCcEEEecCCcceEEee--cCCccceeccCc----ceecc-eEEechhH-HHHHhhhhcCC
Confidence            34567789999999999999987  445559998876    79996 79999995 44444455554

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.67  E-value=1.2e-07  Score=96.14  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~--g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      |...+++.|.+|+++++|++|+.+  ++++++|.+.++  ++...+.|+ .||+++....+.+||
T Consensus       238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll  299 (492)
T TIGR02733       238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL  299 (492)
T ss_pred             HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence            333455679999999999999988  578889987754  222468895 799999876555544

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06370 mercuric reductase; Validated

Probab=98.64  E-value=1.6e-06  Score=87.21  Aligned_cols=37  Identities=41%  Similarity=0.558  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |+.+||+||||+|++|..+|.+|++. |++|+|+|++.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            56689999999999999999999998 99999999864

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.62  E-value=9.4e-08  Score=92.46  Aligned_cols=49  Identities=27%  Similarity=0.485  Sum_probs=37.6

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      .+.+|++|+ +.+|++|..+  +++|.||.+.+ |.  .+.++ .||+|+|.|.+.
T Consensus       106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~~-g~--~~~a~-~vVlaTGtfl~G  154 (392)
T PF01134_consen  106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTKD-GE--EIEAD-AVVLATGTFLNG  154 (392)
T ss_dssp             HTSTTEEEE-ES-EEEEEEC--TTEEEEEEETT-SE--EEEEC-EEEE-TTTGBTS
T ss_pred             hcCCCeEEE-EcccceEEec--CCeEEEEEeCC-CC--EEecC-EEEEecccccCc
Confidence            346899997 6799999998  79999998865 33  68894 899999995443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG4254|consensus

Probab=98.62  E-value=7.1e-08  Score=92.56  Aligned_cols=58  Identities=22%  Similarity=0.346  Sum_probs=48.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      +.+.+++.|.+|.+++.|.+|+.|  +|++.||.+.++.   ++++ |.||..|+.+.|=.-|+
T Consensus       270 ia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~---ev~s-k~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  270 IAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGT---EVRS-KIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCc---EEEe-eeeecCCchHHHHHHhC
Confidence            445677899999999999999999  6999999999864   5777 68999999888874444

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.62  E-value=2.7e-07  Score=92.47  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             hHHhhhhhccCCCeE--EEeCcEEEEEEEcCCCCeEEEEEEEeCC-eEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        257 SKAYLKPIIDRTNLH--VIKNSRVVKIIIDPISKQAKGVELVKNG-HKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       257 ~~~~l~~~~~~~g~~--i~~~~~V~~i~~~~~~~~v~GV~~~~~g-~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      ...||...+++.++.  |+++++|++|..+  +++.+ |.+.+++ ...+..++ .||+|+|.+..|++..-.|+
T Consensus       113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w~-V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~  183 (461)
T PLN02172        113 VLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKWR-VQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI  183 (461)
T ss_pred             HHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeEE-EEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence            445777777777877  9999999999876  44432 4444332 33345675 79999999888887654444

>PRK08244 hypothetical protein; Provisional

Probab=98.62  E-value=3.4e-07  Score=92.86  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            58999999999999999999998 999999999753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.60  E-value=1.4e-06  Score=87.71  Aligned_cols=35  Identities=43%  Similarity=0.706  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence            469999999999999999999998 99999999865

>KOG2404|consensus

Probab=98.60  E-value=4.5e-07  Score=83.66  Aligned_cols=49  Identities=27%  Similarity=0.556  Sum_probs=41.9

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .-++|.+|++|++|+.+  +++|.||+|.+ .|+...+..+ .||+|+|+|.-
T Consensus       158 e~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y  207 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY  207 (477)
T ss_pred             HHHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence            45899999999999965  79999999997 3666677785 79999999986

>PLN02985 squalene monooxygenase

Probab=98.59  E-value=1.3e-06  Score=88.78  Aligned_cols=39  Identities=41%  Similarity=0.508  Sum_probs=35.2

Q ss_pred             CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+....+||||||+|++|+++|..|+++ |.+|+|+||..
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~   76 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL   76 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence            3556789999999999999999999998 99999999863

>KOG2853|consensus

Probab=98.58  E-value=3.7e-06  Score=78.29  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             cCCCCCCCcccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCCC
Q psy10417         15 YGNKRLLDEYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDED   59 (385)
Q Consensus        15 ~~~~~~~~~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~~   59 (385)
                      ..+...+..+||+|||+|..|+++|+-|-+   +.|.+|+|+|+.+-.
T Consensus        78 ~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   78 LDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            334466778999999999999999998865   357999999997643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.58  E-value=2.5e-07  Score=82.20  Aligned_cols=62  Identities=26%  Similarity=0.447  Sum_probs=37.5

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSG  327 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg  327 (385)
                      .|+...+++.+++++++++|+++..++  ++ --|++.+ +  +++.| +.||+|+|.+..|+.+..-|
T Consensus        86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~-~--~~~~a-~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   86 DYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRD-G--RTIRA-DRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETT-S---EEEE-EEEEE---SSCSB---S-TT
T ss_pred             HHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEe-c--ceeee-eeEEEeeeccCCCCcccccc
Confidence            466666677788899999999999984  33 2244433 3  47789 48999999999998875444

...

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.56  E-value=3e-06  Score=83.03  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      .+++.|++++.++.|+++..+  ++++++|.+..+ ...+++|+ .||||+|++.|..|+...
T Consensus       272 ~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g-~~~~l~AD-~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       272 RFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNH-RDIPLRAD-HFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHCCCEEEECcEEEEEEee--CCeEEEEEecCC-ccceEECC-EEEEccCCCcCHHHHhhc
Confidence            445779999999999999988  678888776543 24479996 799999998788886654

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06184 hypothetical protein; Provisional

Probab=98.54  E-value=1.9e-06  Score=87.61  Aligned_cols=36  Identities=36%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~   37 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE   37 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            468999999999999999999998 999999999653

>KOG2665|consensus

Probab=98.52  E-value=1.3e-06  Score=80.57  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      ..+.||.||||+|+.|++.|++|.-+ |+.+|+|||+-...
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            35689999999999999999999875 89999999997543

>PRK06847 hypothetical protein; Provisional

Probab=98.52  E-value=8.9e-07  Score=86.44  Aligned_cols=36  Identities=31%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+..||+|||+|++|+++|..|++. |.+|+|+|+..
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~   37 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP   37 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            3467999999999999999999998 99999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.50  E-value=2.1e-06  Score=84.00  Aligned_cols=33  Identities=39%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ||+|||+|++|+++|..|+++ |.+|+|+||...
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence            899999999999999999998 999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.49  E-value=2.5e-06  Score=87.15  Aligned_cols=61  Identities=16%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .+.+.|++|+++++|++|..+  ++++.+|++.+  +|+...++|+ .||+|||+ ++..|+...|+
T Consensus       137 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~  199 (516)
T TIGR03377       137 DAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL  199 (516)
T ss_pred             HHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence            445679999999999999987  68899999875  4556689994 89999996 67888877775

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.48  E-value=2.7e-06  Score=87.34  Aligned_cols=37  Identities=32%  Similarity=0.450  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...+||+|||+|++|+++|..|+++ |.+|+||||...
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            5679999999999999999999998 999999999753

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.48  E-value=7.2e-06  Score=81.07  Aligned_cols=101  Identities=18%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc-CCCChhhhhhcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS-GVGPREHLTELGI  339 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S-gig~~~~l~~~gi  339 (385)
                      +....++.|++|++++.|+++..+  +++++.|. ..+++...++++ .||||+|.+.+..|.... +|-    -.-+|+
T Consensus       265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~a~~~~i~----Epif~l  336 (422)
T PRK05329        265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLVAERDGIR----EPIFGL  336 (422)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCceeccCCccc----cccCCC
Confidence            444556789999999999999987  56777766 344556689995 899999998777663222 121    112344


Q ss_pred             Ccccc-----ccchhhhhhccCCCceEEEEcCCccc
Q psy10417        340 PVVQD-----LRVGDNLMEHVAYSALTFGINKTFSV  370 (385)
Q Consensus       340 ~~~~~-----~pvG~~l~dh~~~~~~~~~~~~~~~~  370 (385)
                      ++...     +--.+.|..||++ ..-+.+++.+..
T Consensus       337 ~v~~~~~r~~w~~~~~~~~~p~~-~~GV~~d~~~~p  371 (422)
T PRK05329        337 DVLQPADRADWYQRDFFAPHPFL-QFGVATDATLRP  371 (422)
T ss_pred             CCCCCCchhhhhhhhhccCCchh-hcCceECCCcCc
Confidence            43211     1123445667775 444555555443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.48  E-value=1.7e-06  Score=85.27  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      .|||+|||+|++|+++|..|+++ +|.+|+|+|+.+
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            38999999999999999999998 149999999975

>PRK06126 hypothetical protein; Provisional

Probab=98.46  E-value=6.6e-06  Score=84.57  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..++||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~   40 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD   40 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            4578999999999999999999998 99999999864

>PRK07045 putative monooxygenase; Reviewed

Probab=98.45  E-value=2.6e-06  Score=83.73  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..++||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR   39 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence            3568999999999999999999998 999999999763

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.44  E-value=2.4e-06  Score=83.93  Aligned_cols=33  Identities=36%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+||+|||+|++|+++|..|+++ |++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence            57999999999999999999999 9999999996

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.42  E-value=3.5e-06  Score=82.93  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence            57999999999999999999998 99999999975

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.42  E-value=2e-06  Score=87.69  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |||||||+|.+|+.+|..+|+. |.+|+|+|+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            7999999999999999999998 99999999863

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02697 lycopene epsilon cyclase

Probab=98.41  E-value=2.3e-06  Score=86.90  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ...|||+|||+|++|+++|..|+++ |++|+|||++
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~  140 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD  140 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence            3469999999999999999999998 9999999975

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=7.2e-06  Score=80.21  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence            7999999999999999999998 99999999864

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=3e-06  Score=87.39  Aligned_cols=57  Identities=12%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+.+.|++|+.++.+++|+.++ +++|+||...+  +|+.+.+.| |.||||+|++..
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  190 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR  190 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence            3334456799999999999999864 58999999864  577778999 599999999885

>PRK11445 putative oxidoreductase; Provisional

Probab=98.39  E-value=9.3e-06  Score=78.76  Aligned_cols=32  Identities=34%  Similarity=0.567  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |||+|||+|++|+++|..|+++  .+|+|||+.+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence            8999999999999999999985  8999999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.38  E-value=9.7e-06  Score=79.77  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~   37 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA   37 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence            467999999999999999999998 99999999975

>PRK07190 hypothetical protein; Provisional

Probab=98.37  E-value=5.1e-06  Score=84.09  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+|||+|++|+++|..|+++ |.+|+||||.+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~   38 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSD   38 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence            358999999999999999999998 99999999975

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.37  E-value=1.7e-06  Score=87.31  Aligned_cols=60  Identities=15%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCC--CC-eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPI--SK-QAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~--~~-~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .+++.|.+|+++++|++|+.+..  +. ++++|.+.+++....+.++ .||+|+.+....+||-
T Consensus       228 ~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       228 YIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLP  290 (474)
T ss_pred             HHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCC
Confidence            44558999999999999998631  22 4888888643222358886 7999999887777763

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.36  E-value=8.2e-07  Score=90.38  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .|+|||+|++|+++|..|.+. |.+|+++||.+..+
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG   37 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG   37 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence            489999999999999999998 99999999987654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.33  E-value=5.1e-07  Score=65.62  Aligned_cols=32  Identities=31%  Similarity=0.543  Sum_probs=29.0

Q ss_pred             EECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         28 IVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        28 IVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      |||+|++|+++|+.|+++ |.+|+|+|+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence            899999999999999998 99999999988764

...

>PRK07538 hypothetical protein; Provisional

Probab=98.31  E-value=9.2e-06  Score=80.55  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP   33 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence            3899999999999999999998 99999999965

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.30  E-value=1.3e-05  Score=82.34  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ......+||+|||+|++|+++|..|++. |.+|+|+||.+
T Consensus        18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~   56 (547)
T PRK08132         18 ADDPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD   56 (547)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            3445779999999999999999999998 99999999975

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=2e-06  Score=84.85  Aligned_cols=51  Identities=25%  Similarity=0.518  Sum_probs=39.7

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      ..+|++|+.+ .|++|+.++ +.+|.||.+.++-   .+.| +.|||++|.|-.-++
T Consensus       112 ~~~NL~l~q~-~v~dli~e~-~~~v~GV~t~~G~---~~~a-~aVVlTTGTFL~G~I  162 (621)
T COG0445         112 NQPNLHLLQG-EVEDLIVEE-GQRVVGVVTADGP---EFHA-KAVVLTTGTFLRGKI  162 (621)
T ss_pred             cCCCceehHh-hhHHHhhcC-CCeEEEEEeCCCC---eeec-CEEEEeecccccceE
Confidence            4689999876 688888863 3479999998753   6888 589999999876554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.28  E-value=7.4e-06  Score=79.32  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=42.6

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      ..++..|++++.+|+|++|+++  ++.+.+|...++.   ++.++ .||||-|--....+
T Consensus       181 ~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~---~i~~~-~vvlA~Grsg~dw~  234 (486)
T COG2509         181 EYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGE---EIEAD-YVVLAPGRSGRDWF  234 (486)
T ss_pred             HHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCc---EEecC-EEEEccCcchHHHH
Confidence            3456779999999999999998  5668888887754   78995 89999996544443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.26  E-value=4.7e-06  Score=83.22  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=35.6

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCce-EEEEecCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGDED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~~~   59 (385)
                      ...+.+||+|||+|.+|+++|++|.++ |.. ++||||....
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~   44 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV   44 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence            346789999999999999999999998 888 9999998644

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.23  E-value=1.6e-05  Score=76.23  Aligned_cols=53  Identities=23%  Similarity=0.412  Sum_probs=41.3

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      ..+.+.|++++.+++|+.|..+  ++++++|.+.+ |   +++|+ .||+|+|+ +++.|+
T Consensus       145 ~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~-g---~~~a~-~vV~a~G~-~~~~l~  197 (337)
T TIGR02352       145 KALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPS-G---DVQAD-QVVLAAGA-WAGELL  197 (337)
T ss_pred             HHHHHcCCEEEccceEEEEEee--CCEEEEEEcCC-C---EEECC-EEEEcCCh-hhhhcc
Confidence            3455679999999999999976  67788887543 3   68895 79999996 666654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG1399|consensus

Probab=98.21  E-value=6e-06  Score=81.86  Aligned_cols=39  Identities=26%  Similarity=0.384  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...-+|+|||+|++||++|+.|.++ |..|+|+||.+...
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iG   42 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIG   42 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCcc
Confidence            3456999999999999999999998 99999999987653

>PLN02487 zeta-carotene desaturase

Probab=98.21  E-value=2.1e-05  Score=80.61  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCC-CC--eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPI-SK--QAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~-~~--~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      .+++.|.+|++++.|++|+.+.+ ++  +++||.+.+++....+.++ .||+|++.....+||
T Consensus       304 ~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        304 YITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence            44678999999999999999742 22  5899998533333457885 799999976655554

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.21  E-value=1.2e-06  Score=87.63  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...|||+|||+|++|+++|..||++ |++|+|||+..
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~   72 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL   72 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            5579999999999999999999998 99999999863

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.19  E-value=1.3e-06  Score=84.02  Aligned_cols=36  Identities=39%  Similarity=0.549  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +|||+|||+|++|+++|..|+++ |.+|+|+||.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence            58999999999999999999999 9999999997643

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.18  E-value=1.5e-06  Score=81.44  Aligned_cols=34  Identities=41%  Similarity=0.677  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      |||+|||+|++|+++|..|++. |.+|+|+|+...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            7999999999999999999998 999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.16  E-value=1.4e-06  Score=85.76  Aligned_cols=32  Identities=28%  Similarity=0.611  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      |||||||+|++|+++|+.||++ |.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            7999999999999999999998 9999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.11  E-value=2.2e-06  Score=85.99  Aligned_cols=35  Identities=40%  Similarity=0.735  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++||++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence            469999999999999999999998 99999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09126 hypothetical protein; Provisional

Probab=98.10  E-value=2.4e-06  Score=83.94  Aligned_cols=36  Identities=36%  Similarity=0.435  Sum_probs=33.6

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||+|||+|++|+++|..|+++ |++|+|+||...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence            369999999999999999999998 999999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.09  E-value=3e-06  Score=83.32  Aligned_cols=36  Identities=33%  Similarity=0.496  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+||+|||+|++|+++|..|+++ |.+|+|||+.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence            5678999999999999999999998 99999999975

>PRK08013 oxidoreductase; Provisional

Probab=98.08  E-value=3e-06  Score=83.64  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +++||+|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence            468999999999999999999998 999999999764

>PRK06116 glutathione reductase; Validated

Probab=98.08  E-value=3.1e-06  Score=84.95  Aligned_cols=36  Identities=42%  Similarity=0.652  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+|||+|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~~   37 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAKR   37 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            4579999999999999999999998 99999999863

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.07  E-value=3.1e-06  Score=84.70  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|||||||||++|+.+|.+|++. |++|+|+|+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCC
Confidence            469999999999999999999998 99999999975

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.07  E-value=4.6e-05  Score=78.61  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+++.|++|++++.|++|+.+  +++|+||...+  +|+...+.| |.||||+|++..
T Consensus       125 L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~  182 (565)
T TIGR01816       125 LYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR  182 (565)
T ss_pred             HHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence            444455679999999999999987  68999999864  577778999 599999999875

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.07  E-value=3.7e-06  Score=82.51  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++.+||||||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~   40 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP   40 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence            4468999999999999999999998 99999999965

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.06  E-value=3.4e-06  Score=82.92  Aligned_cols=36  Identities=28%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            3569999999999999999999998 99999999864

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.06  E-value=3.5e-06  Score=82.60  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +..+||||||+|++|+++|..|++. |.+|+|+|++..
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP   39 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            3468999999999999999999998 999999999864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.05  E-value=3.4e-06  Score=84.54  Aligned_cols=33  Identities=33%  Similarity=0.567  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +||++|||+|++|..+|.++++. |++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            69999999999999999999998 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.02  E-value=4.3e-06  Score=82.65  Aligned_cols=34  Identities=38%  Similarity=0.629  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +|||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            58999999999999999999998 99999999975

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.02  E-value=3.7e-06  Score=83.00  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +||||||+|++|+++|+.||++ |++|+|||+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            6999999999999999999998 99999999853

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.01  E-value=4.9e-06  Score=83.14  Aligned_cols=35  Identities=34%  Similarity=0.567  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|||||||||+||+.+|.+|++. |++|+|+|+++
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence            479999999999999999999998 99999999975

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=6.5e-06  Score=76.28  Aligned_cols=37  Identities=32%  Similarity=0.646  Sum_probs=33.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .||++|||||.+|+++|..|++. |++|||+||-+.+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCC
Confidence            38999999999999999999998 99999999977654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.99  E-value=5.1e-06  Score=81.58  Aligned_cols=34  Identities=32%  Similarity=0.610  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            58999999999999999999998 99999999864

>PTZ00058 glutathione reductase; Provisional

Probab=97.98  E-value=6.5e-06  Score=84.39  Aligned_cols=36  Identities=36%  Similarity=0.539  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+||||+|++|..+|.++++. |.+|+|+|++.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~   81 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY   81 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            3579999999999999999999998 99999999863

>KOG0029|consensus

Probab=97.98  E-value=6.2e-06  Score=83.12  Aligned_cols=42  Identities=29%  Similarity=0.453  Sum_probs=37.4

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      ...+..+|||||||++|++||++|.+. |.+|+|||+-+..+.
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG   52 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence            445678999999999999999999998 999999999877653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.98  E-value=5.5e-06  Score=81.88  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +..+||+|||+|++|+++|..|+++ |.+|+|+|+.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            3468999999999999999999998 9999999985

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=6.2e-06  Score=83.24  Aligned_cols=36  Identities=42%  Similarity=0.763  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...||+||||||++|+.+|.+|++. |++|+|+|++.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   37 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK   37 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            4579999999999999999999998 99999999864

>KOG2852|consensus

Probab=97.96  E-value=6.1e-06  Score=75.24  Aligned_cols=102  Identities=13%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELG  338 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~g  338 (385)
                      .+..+.++.|++++.+ .|.++.-+  .+|+.+|-..- .+..+...+. .||||+|. +|++||..-+|.   .++.+-
T Consensus       153 i~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rIs---glrihs  224 (380)
T KOG2852|consen  153 ILSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRIS---GLRIHS  224 (380)
T ss_pred             HHHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhccccccc---eeeeee
Confidence            3455667778999997 67777644  57777776652 2334456674 79999996 889998875542   233333


Q ss_pred             CCccccccch-hhhhhccCCCceEEEEcCCccchhhhh
Q psy10417        339 IPVVQDLRVG-DNLMEHVAYSALTFGINKTFSVVTKRL  375 (385)
Q Consensus       339 i~~~~~~pvG-~~l~dh~~~~~~~~~~~~~~~~~~~~~  375 (385)
                      |...    +| .++.+|..  .+.+..+......+-++
T Consensus       225 I~l~----~~e~~v~~~av--f~~l~~~~g~ei~~pe~  256 (380)
T KOG2852|consen  225 ITLS----PGEKPVGPSAV--FCELNTMDGLEICKPEE  256 (380)
T ss_pred             EEec----CCCCCCCCceE--EEEEEeCCCccccCcce
Confidence            3221    22 22555554  35666666544443333

>PLN02463 lycopene beta cyclase

Probab=97.96  E-value=7.1e-06  Score=81.93  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .....|||+|||+|++|+++|..|+++ |++|+|||+.+
T Consensus        24 ~~~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~   61 (447)
T PLN02463         24 SKSRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP   61 (447)
T ss_pred             ccccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence            345579999999999999999999998 99999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=6.9e-06  Score=77.69  Aligned_cols=63  Identities=24%  Similarity=0.382  Sum_probs=47.9

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .+.+.++.++.+++++.+++|.-+  +  +.+|.+.+. ++...+..+ .|+++.|...+..++...++
T Consensus       185 ~~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~  248 (305)
T COG0492         185 VERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV  248 (305)
T ss_pred             HHHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence            333334558999999999999865  3  788888865 667788886 79999998777777776554

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.94  E-value=7.8e-06  Score=82.39  Aligned_cols=35  Identities=34%  Similarity=0.621  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            469999999999999999999998 99999999863

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.94  E-value=8.5e-06  Score=79.31  Aligned_cols=36  Identities=39%  Similarity=0.713  Sum_probs=32.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +||+|||+|++|+++|++|++. |.+|+|||+.+...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence            7999999999999999999998 99999999976543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.93  E-value=8.5e-06  Score=81.98  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..|||+|||+|++|+.+|.+|++. |++|+|+|+++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~   40 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV   40 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence            469999999999999999999998 9999999997543

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.92  E-value=6.9e-05  Score=75.14  Aligned_cols=54  Identities=24%  Similarity=0.351  Sum_probs=37.8

Q ss_pred             hHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417        257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA  316 (385)
Q Consensus       257 ~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa  316 (385)
                      ...+|...+.+.|++++.++ |+++..++ ++.+++|++.++   .+++|+ -||=|+|.
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g---~~i~ad-~~IDASG~  209 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDG---RTIEAD-FFIDASGR  209 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTS---EEEEES-EEEE-SGG
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCC---CEEEEe-EEEECCCc
Confidence            34466666666799999885 88888876 688988888763   278995 88888883

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.91  E-value=8.6e-06  Score=83.84  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...|||+|||||+||+++|.+|+++ |++|+|+|++..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~   38 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF   38 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            4469999999999999999999998 999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.91  E-value=8.8e-06  Score=82.02  Aligned_cols=34  Identities=35%  Similarity=0.614  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+||++|||+|++|+++|.+|++. |++|+|+|+.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~   35 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR   35 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            359999999999999999999998 9999999973

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00011  Score=68.95  Aligned_cols=59  Identities=19%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      ..-+|++|++|+.-++|.=|  +.+|+|+.|.+  .|+.+.+.-. .|.+--|-+.+..+|.-+
T Consensus       400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence            34689999999999999877  78999999986  4777788875 699999999999988755

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.90  E-value=1e-05  Score=81.40  Aligned_cols=34  Identities=47%  Similarity=0.797  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+||+||||||++|+++|.+|++. |++|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            569999999999999999999998 9999999994

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.89  E-value=1.1e-05  Score=79.06  Aligned_cols=33  Identities=45%  Similarity=0.614  Sum_probs=31.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~   58 (385)
                      ||+|||+|++|+++|..|+++ | ++|+|+|+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence            899999999999999999998 9 99999999764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.89  E-value=9.1e-06  Score=81.22  Aligned_cols=33  Identities=42%  Similarity=0.650  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHhHhhc----CCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSE----VPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~----~~G~~VlvLE~G~   57 (385)
                      |||+|||+|++|+++|..|++    + |.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence            799999999999999999999    7 99999999954

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PTZ00367 squalene epoxidase; Provisional

Probab=97.89  E-value=1.1e-05  Score=82.82  Aligned_cols=38  Identities=42%  Similarity=0.584  Sum_probs=34.5

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +....|||||||+|++|+++|..|+++ |.+|+|+||..
T Consensus        29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~   66 (567)
T PTZ00367         29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL   66 (567)
T ss_pred             ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence            445689999999999999999999998 99999999964

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=1.2e-05  Score=81.22  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+||||+|++|..+|.+|++. |++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            3469999999999999999999998 99999999864

>PRK09897 hypothetical protein; Provisional

Probab=97.88  E-value=0.00024  Score=72.31  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            4799999999999999999885 24589999997644

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.87  E-value=1.2e-05  Score=81.02  Aligned_cols=33  Identities=39%  Similarity=0.736  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .|||||||||++|+.+|.+|++. |.+|+|+|++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            48999999999999999999998 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.87  E-value=1.1e-05  Score=79.25  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ||||||+|++|+++|+.|+++ |.+|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence            899999999999999999998 999999998753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.86  E-value=1.1e-05  Score=75.85  Aligned_cols=55  Identities=24%  Similarity=0.341  Sum_probs=42.3

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      .|+++++++.|+++..+   +++.+|++.+  +++..++.++ .||+|+|.-.+..+|..+
T Consensus       190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~  246 (300)
T TIGR01292       190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL  246 (300)
T ss_pred             CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence            49999999999999754   3677777654  3566789996 899999976666676654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=97.85  E-value=1.3e-05  Score=82.33  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      +|||||||+|++|..+|.+||+. |++|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNF-GASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            69999999999999999999998 999999996

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.85  E-value=1.2e-05  Score=79.12  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence            47999999999999999999998 99999999975

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.85  E-value=1.4e-05  Score=78.27  Aligned_cols=34  Identities=44%  Similarity=0.635  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHhHh--hcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRL--SEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~L--a~~~G~~VlvLE~G~~~   59 (385)
                      ||||||+|+||+++|++|  ++. |.+|+|||+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence            899999999999999999  666 9999999997644

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.84  E-value=1.4e-05  Score=80.81  Aligned_cols=34  Identities=41%  Similarity=0.698  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      ..+||+||||+|++|+++|.+|++. |++|+|+|+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            3579999999999999999999998 999999998

>PRK06834 hypothetical protein; Provisional

Probab=97.83  E-value=1.4e-05  Score=81.00  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++||||||+|++|+++|..|+++ |.+|+|||+.+
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~   36 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP   36 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            468999999999999999999998 99999999865

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.83  E-value=1.5e-05  Score=78.32  Aligned_cols=35  Identities=43%  Similarity=0.557  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcC--CCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G   56 (385)
                      ..+||+|||+|++|+++|..|+++  .|.+|+|+||-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            568999999999999999999874  39999999985

>PLN02268 probable polyamine oxidase

Probab=97.83  E-value=1.9e-05  Score=78.78  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=33.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      +|||||+|++|+++|+.|.++ |++|+|||+.+....
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence            799999999999999999998 999999999888754

>PRK07236 hypothetical protein; Provisional

Probab=97.83  E-value=1.5e-05  Score=78.35  Aligned_cols=36  Identities=22%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++..||+|||+|++|+++|..|+++ |.+|+|+||.+
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            4468999999999999999999998 99999999875

>TIGR02053 MerA mercuric reductase

Probab=97.81  E-value=1.6e-05  Score=80.08  Aligned_cols=33  Identities=30%  Similarity=0.623  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            7999999999999999999998 99999999865

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.81  E-value=2.2e-05  Score=82.00  Aligned_cols=43  Identities=30%  Similarity=0.414  Sum_probs=37.7

Q ss_pred             hcCCCCCCCcccEEEECCCchHHHHHhHhhc-CCCceEEEEecCC
Q psy10417         14 LYGNKRLLDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGD   57 (385)
Q Consensus        14 ~~~~~~~~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G~   57 (385)
                      +..+..+.+++||+|||+|++|+++|..|++ . |.+|+|||+.+
T Consensus        23 ~~~~~~~~~~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~   66 (634)
T PRK08294         23 INRPADLPDEVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKP   66 (634)
T ss_pred             CCCcccCCCCCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence            4445557779999999999999999999999 6 99999999865

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.80  E-value=1.7e-05  Score=79.38  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~~   60 (385)
                      +|+|||||++|+++|+.|+++ |  ++|+|||+.+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence            689999999999999999997 7  8999999987764

>PRK14694 putative mercuric reductase; Provisional

Probab=97.79  E-value=1.8e-05  Score=79.74  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~   39 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT   39 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence            4579999999999999999999998 99999999974

>PRK07233 hypothetical protein; Provisional

Probab=97.79  E-value=1.9e-05  Score=78.41  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      +|||||+|++|+++|+.|+++ |++|+|||+.+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence            589999999999999999998 999999999887643

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.78  E-value=2.2e-05  Score=78.21  Aligned_cols=36  Identities=42%  Similarity=0.793  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+||||+|++|-++|.++|+. |.+|+++|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence            4689999999999999999999998 99999999985

>PRK13748 putative mercuric reductase; Provisional

Probab=97.77  E-value=2.1e-05  Score=81.17  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            469999999999999999999998 99999999873

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=2.1e-05  Score=77.73  Aligned_cols=36  Identities=33%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      -|+|+|+|+||+++|++||++ |++|+|+|++++...
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCc
Confidence            489999999999999999999 999999999988753

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.76  E-value=2.2e-05  Score=81.83  Aligned_cols=33  Identities=39%  Similarity=0.616  Sum_probs=31.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +||+||||+|++|..+|.++++. |++|+|+|++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            79999999999999999999998 9999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.75  E-value=2.3e-05  Score=79.58  Aligned_cols=33  Identities=30%  Similarity=0.534  Sum_probs=31.5

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .||+||||+|++|+.+|.+|++. |++|+|+|++
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence            69999999999999999999998 9999999974

>PRK07588 hypothetical protein; Provisional

Probab=97.74  E-value=2.2e-05  Score=77.13  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .||+|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP   33 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence            3899999999999999999998 99999999975

>PRK06753 hypothetical protein; Provisional

Probab=97.74  E-value=2.3e-05  Score=76.45  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .||+|||+|++|+++|..|+++ |++|+|+||.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            3799999999999999999998 999999999764

>PLN02576 protoporphyrinogen oxidase

Probab=97.73  E-value=3e-05  Score=78.77  Aligned_cols=43  Identities=33%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .....+||+|||||++|+++|++|+++.|.+|+|||+.+....
T Consensus         8 ~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576          8 AAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            4456789999999999999999999843799999999887643

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.73  E-value=0.001  Score=65.17  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=37.2

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      ..+.+ |++|+.++.|++|..+  +++ ..|.+.+ |.  .++|+ .||+|+|+ +++.|+.
T Consensus       143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~-g~--~~~a~-~vV~a~G~-~~~~l~~  195 (381)
T TIGR03197       143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLDAN-GE--VIAAS-VVVLANGA-QAGQLAQ  195 (381)
T ss_pred             hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCC-CC--EEEcC-EEEEcCCc-ccccccc
Confidence            34556 9999999999999876  444 3354433 32  47885 79999996 5565543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06996 hypothetical protein; Provisional

Probab=97.71  E-value=3.1e-05  Score=76.36  Aligned_cols=36  Identities=36%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCC----ceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPS----WKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G----~~VlvLE~G~   57 (385)
                      .+++||+|||+|++|+++|..|+++ |    ++|+|+|+.+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence            5578999999999999999999997 6    5799999975

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.69  E-value=3.2e-05  Score=75.56  Aligned_cols=35  Identities=43%  Similarity=0.764  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      ||+|||+|++|+++|.+|+++ +|++|+|||+++..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            899999999999999999984 69999999998643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02507 glutathione reductase

Probab=97.69  E-value=2.9e-05  Score=78.86  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      ..+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            4479999999999999999999998 999999996

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.68  E-value=3.8e-05  Score=77.23  Aligned_cols=37  Identities=30%  Similarity=0.494  Sum_probs=33.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-C--CceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-P--SWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~--G~~VlvLE~G~~~~   60 (385)
                      .||+|||+|++|+++|++|+++ +  |++|+|+|+.+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            6999999999999999999986 2  89999999987764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.66  E-value=4.8e-05  Score=74.03  Aligned_cols=39  Identities=36%  Similarity=0.512  Sum_probs=35.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .+..||||||+|.+||++|++|.++ |++|+|||+-+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence            5678999999999999999999999 99999999977663

>PLN02568 polyamine oxidase

Probab=97.63  E-value=5.3e-05  Score=77.47  Aligned_cols=40  Identities=28%  Similarity=0.479  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCC-----ceEEEEecCCCCCc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPS-----WKVLLIEAGDEDRI   61 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G-----~~VlvLE~G~~~~~   61 (385)
                      .+..||||||+|++|+++|++|+++ |     .+|+|||+......
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCC
Confidence            3457999999999999999999987 6     89999999887643

>PRK10262 thioredoxin reductase; Provisional

Probab=97.60  E-value=4.9e-05  Score=72.68  Aligned_cols=62  Identities=15%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN---GHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~---g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      ..++..|+++++++.|+++.-+  ++++.+|++.+.   +...++.++ .||+|.|.-.+..++ .+++
T Consensus       193 ~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l  257 (321)
T PRK10262        193 DKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL  257 (321)
T ss_pred             hhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence            3456789999999999999754  456778887753   345579996 899999977776654 3444

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.60  E-value=5.4e-05  Score=66.83  Aligned_cols=32  Identities=38%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ||||||||+||+.+|.+|++. +.+|+++|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence            799999999999999999987 99999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK14727 putative mercuric reductase; Provisional

Probab=97.57  E-value=7.3e-05  Score=75.65  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +....||+||||+|++|..+|.+|++. |.+|+|+|++..
T Consensus        12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~   50 (479)
T PRK14727         12 RSKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV   50 (479)
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence            335579999999999999999999998 999999999743

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.57  E-value=6.3e-05  Score=78.13  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.++|+|||||++|+++|..|+++ |.+|+|+||.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence            46779999999999999999999998 99999999964

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.56  E-value=6.2e-05  Score=73.88  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -||+|||||.+|+.+|+.||++ |++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            4999999999999999999998 9999999987644

>PRK05868 hypothetical protein; Validated

Probab=97.55  E-value=6.3e-05  Score=73.56  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ||+|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence            899999999999999999998 999999999753

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.55  E-value=0.004  Score=61.75  Aligned_cols=55  Identities=18%  Similarity=0.314  Sum_probs=40.6

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEEeCCeEEE--EEeCcEEEEcCCCcc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELVKNGHKRS--VFARKEVIVSSGAFN  318 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~~~g~~~~--i~a~k~VVlAaGa~~  318 (385)
                      .++..||++..+|+|+.|.++..  ..+|+++++..+|+..+  +..+..|++.-|++-
T Consensus       216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            34578999999999999998643  24578888887765544  445567888877643

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.52  E-value=6.2e-05  Score=75.75  Aligned_cols=37  Identities=16%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCC-----CceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVP-----SWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~-----G~~VlvLE~G~~~~~   61 (385)
                      +|+|||+|++|+++|++|+++.     |.+|+|||+.+....
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            5999999999999999999851     479999999887643

>PLN02676 polyamine oxidase

Probab=97.52  E-value=9e-05  Score=75.04  Aligned_cols=40  Identities=38%  Similarity=0.449  Sum_probs=35.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCCCc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDEDRI   61 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~~~   61 (385)
                      ...+||||||+|++|+++|++|+++ |. +|+|||+.+....
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG   64 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence            3468999999999999999999998 98 6999999877643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.51  E-value=8.7e-05  Score=75.10  Aligned_cols=35  Identities=23%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+||+||||+|++|..+|.++|+..|.+|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            47999999999999999999999428999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.48  E-value=8.3e-05  Score=75.96  Aligned_cols=57  Identities=18%  Similarity=0.281  Sum_probs=46.5

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      ..|+++++++.|+++.-+  ++++++|++.+  +++..++.++ .|++|.|...++.+|..+
T Consensus       399 ~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~  457 (517)
T PRK15317        399 LPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT  457 (517)
T ss_pred             CCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence            469999999999999865  57888888874  4556689996 899999988878877544

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.48  E-value=8.5e-05  Score=75.20  Aligned_cols=33  Identities=33%  Similarity=0.677  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +||+||||+|++|..+|.++++. |.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            58999999999999999999998 9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.48  E-value=0.00069  Score=67.76  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      .|||||+|++|+.+|.+|.+. ++.+|+|+|+.+
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            699999999999999999874 467999999875

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.47  E-value=9.7e-05  Score=74.14  Aligned_cols=51  Identities=22%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-C-eEEEEEeCcEEEEcCCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-G-HKRSVFARKEVIVSSGA  316 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g-~~~~i~a~k~VVlAaGa  316 (385)
                      .+++.|.+|++++.|++|..++ +++++||++.++ + +.+++.++ .||+|+..
T Consensus       222 ~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~  274 (453)
T TIGR02731       222 YITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV  274 (453)
T ss_pred             HHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence            3445689999999999998754 567889998754 2 23368885 79999975

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.45  E-value=0.00052  Score=66.22  Aligned_cols=37  Identities=30%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +.||+|+||.|++++++|..|.+.+..+++.||+-+.
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            3589999999999999999999974599999998653

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00011  Score=68.38  Aligned_cols=55  Identities=16%  Similarity=0.105  Sum_probs=46.4

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      ..++.|..++.+-+|.+..+.  +++++.|.++ ......++|+ .+|||+|+|-|--|
T Consensus       267 ~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGL  321 (421)
T COG3075         267 QFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGL  321 (421)
T ss_pred             HHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChh-Heeeeccccccccc
Confidence            445789999999999999998  7899999887 4556689995 89999999988765

>KOG2311|consensus

Probab=97.43  E-value=0.00042  Score=67.60  Aligned_cols=34  Identities=26%  Similarity=0.608  Sum_probs=31.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      ...|||||||+|-|||-+|...|+- |.+.++|-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~   59 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTH   59 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc-CCceEEeec
Confidence            6789999999999999999999998 999999865

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.42  E-value=0.00012  Score=72.25  Aligned_cols=32  Identities=38%  Similarity=0.615  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +|+|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~   35 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ   35 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            699999999999999999998 99999999865

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.41  E-value=0.00012  Score=74.84  Aligned_cols=56  Identities=16%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLML  325 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~  325 (385)
                      +.|++|++++.|+++.-+  ++++++|.+.+  +++..++.++ .||+|.|...+..+|..
T Consensus       400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~  457 (515)
T TIGR03140       400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD  457 (515)
T ss_pred             CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence            369999999999999755  57888888875  2555689996 89999998887777653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.41  E-value=0.00014  Score=78.65  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...||+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence            457999999999999999999998 9999999997654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.37  E-value=0.00019  Score=72.08  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      +.++++++++.|+++..+  ++.+ .|.+. +|+  ++.++ .|++|+|.-.+..+|
T Consensus       221 ~~gI~i~~~~~V~~i~~~--~~~v-~v~~~-~g~--~i~~D-~vl~a~G~~pn~~~l  270 (452)
T TIGR03452       221 KKKWDIRLGRNVTAVEQD--GDGV-TLTLD-DGS--TVTAD-VLLVATGRVPNGDLL  270 (452)
T ss_pred             hcCCEEEeCCEEEEEEEc--CCeE-EEEEc-CCC--EEEcC-EEEEeeccCcCCCCc
Confidence            358999999999999865  3332 23332 343  68886 799999977666553

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.36  E-value=0.0002  Score=72.08  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ....||+|||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence            4568999999999999999999998 9999999986543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.33  E-value=0.00017  Score=71.29  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~~~   61 (385)
                      -++|||||++||++|++|.++ +  ..|+|+|++++...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG   39 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence            379999999999999999998 7  99999999877643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.32  E-value=0.00018  Score=78.91  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+++.|++|++++.|+++.-+   +++.+|++.. ++...++.++ .|+++.|...+..|+...|..
T Consensus       360 ~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       360 EARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence            455779999999999998643   5677888774 3455679996 899999998888888777643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.31  E-value=0.00019  Score=70.87  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .||+|||+|.+|+.+|..||+. |.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence            3899999999999999999998 999999998664

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG2614|consensus

Probab=97.30  E-value=0.00021  Score=68.78  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +-+|||||||++|+++|.-|.+. |++|+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence            45899999999999999999998 999999998543

>PRK07846 mycothione reductase; Reviewed

Probab=97.29  E-value=0.00024  Score=71.29  Aligned_cols=50  Identities=24%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      +.++++++++.|+++..+  ++.+ .|.+. +++  ++.++ .||+|+|...+..+|
T Consensus       218 ~~~v~i~~~~~v~~i~~~--~~~v-~v~~~-~g~--~i~~D-~vl~a~G~~pn~~~l  267 (451)
T PRK07846        218 SKRWDVRLGRNVVGVSQD--GSGV-TLRLD-DGS--TVEAD-VLLVATGRVPNGDLL  267 (451)
T ss_pred             hcCeEEEeCCEEEEEEEc--CCEE-EEEEC-CCc--EeecC-EEEEEECCccCcccc
Confidence            457999999999999765  3332 23332 333  68896 799999987777664

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.28  E-value=0.00022  Score=70.70  Aligned_cols=33  Identities=33%  Similarity=0.515  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~   58 (385)
                      .|+|||+|++|+++|..|+++ | .+|+|+||.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence            589999999999999999998 7 69999999653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.28  E-value=0.00037  Score=52.14  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=30.8

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ++|||+|..|+-+|..|++. |.+|+|+|+.+..
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchh
Confidence            79999999999999999998 9999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.27  E-value=0.011  Score=57.89  Aligned_cols=57  Identities=28%  Similarity=0.437  Sum_probs=41.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH-cC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML-SG  327 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~-Sg  327 (385)
                      +....+++.|++|++++.|+++.-+       +|.+.++++  +|.++ .||-|||.=.+| ++.. +|
T Consensus       214 ~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~-~~~~l~~  271 (405)
T COG1252         214 YAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASP-LLKDLSG  271 (405)
T ss_pred             HHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCCh-hhhhcCh
Confidence            4444566789999999999999765       466666543  69995 899999965444 4444 44

>PLN02612 phytoene desaturase

Probab=97.27  E-value=0.00031  Score=72.56  Aligned_cols=39  Identities=31%  Similarity=0.438  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ....+|+|||+|++|+++|++|+++ |++|+|+|+.+...
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g  129 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG  129 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence            4457999999999999999999998 99999999976653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.24  E-value=0.0003  Score=68.80  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=33.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -+++|||+|++|+.+|.+||+. |.+|.++|+.+...
T Consensus       125 ~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG  160 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG  160 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence            4799999999999999999999 99999999988764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.23  E-value=0.00034  Score=70.66  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ....+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence            3457999999999999999999998 9999999998654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.22  E-value=0.00027  Score=76.79  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+|+|||||+||+++|++|+++ |++|+|+|+.+...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence            357899999999999999999998 99999999976543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.21  E-value=0.00035  Score=70.10  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+||+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            3568999999999999999999998 9999999997543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.21  E-value=0.00032  Score=69.39  Aligned_cols=41  Identities=37%  Similarity=0.477  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      |+++|||||+|.|..-+.+|..|+.+ |++||.||+.++.+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence            57899999999999999999999998 999999999998753

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.21  E-value=0.00029  Score=70.91  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ++||||+|++|.++|.+|++. |++|+|+|++...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence            799999999999999999998 9999999997543

>PLN02529 lysine-specific histone demethylase 1

Probab=97.18  E-value=0.00035  Score=73.58  Aligned_cols=39  Identities=33%  Similarity=0.497  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ..+.||+|||+|++|+++|..|+++ |++|+|+|+.+...
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G  196 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG  196 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence            3467999999999999999999998 99999999977654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.17  E-value=0.00044  Score=73.29  Aligned_cols=39  Identities=28%  Similarity=0.572  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ....+|+|||+|++|+++|+.|++. |++|+|+|+.....
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence            4568999999999999999999998 99999999977653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.13  E-value=0.00044  Score=69.75  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |+||||+|++|+.+|..|++. |.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            799999999999999999998 99999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.11  E-value=0.00041  Score=76.04  Aligned_cols=37  Identities=24%  Similarity=0.172  Sum_probs=33.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||||++|+++|.+|++. |++|+|+|+.+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence            357999999999999999999998 9999999998654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.10  E-value=0.00047  Score=72.48  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            457999999999999999999998 9999999997654

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.09  E-value=0.00065  Score=68.49  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .......|+|||||+||+.+|..|+++ .|++|+|+|+-+..
T Consensus        22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            334467899999999999999999872 39999999998754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.06  E-value=0.0068  Score=59.30  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++.|+++++++.|+++..+  ++. ..|.+.+ |+  ++.++ .||+|+|.-.+..++..+|+.
T Consensus       194 ~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~-g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        194 TEMGVHLLLKSQLQGLEKT--DSG-IRATLDS-GR--SIEVD-AVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HhCCCEEEECCeEEEEEcc--CCE-EEEEEcC-Cc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence            3468999999999999765  333 2344433 32  68896 899999987777888877764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.04  E-value=0.00059  Score=72.93  Aligned_cols=37  Identities=24%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ....||+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~  465 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHE  465 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            3467999999999999999999998 999999998653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.04  E-value=0.00053  Score=74.10  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..-+|+|||||+||+++|+.|++. |++|+|+|+.+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence            356999999999999999999998 9999999987654

>KOG0685|consensus

Probab=97.03  E-value=0.00066  Score=66.38  Aligned_cols=42  Identities=33%  Similarity=0.392  Sum_probs=35.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCcc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF   62 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~   62 (385)
                      ....-+||||+|++|++||.+|-++.+..|+|+|+.+.+...
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            445589999999999999999998757799999998887543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.03  E-value=0.00061  Score=68.52  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~  175 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA  175 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence            357999999999999999999998 9999999998654

>KOG4716|consensus

Probab=96.99  E-value=0.00061  Score=63.77  Aligned_cols=34  Identities=29%  Similarity=0.576  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      .-+||.||||+|.+|++||.+.|.- |.+|.+||-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEee
Confidence            4579999999999999999999998 999999984

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.92  E-value=0.00098  Score=62.73  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      ....++.|||+|++|+++|+.|++.  .+|+++|++.....
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGG   44 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGG   44 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc--cceEEEeccccccC
Confidence            3456899999999999999999995  69999999988753

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.87  E-value=0.00083  Score=71.84  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      +|+|||+|++|+++|..|+++ +|++|+|+|+...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999986 4899999999875

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.86  E-value=0.0014  Score=65.47  Aligned_cols=51  Identities=20%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             ccchhhhcCCCCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417          8 PKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus         8 ~~~~~~~~~~~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      |.+....+.+..  ...-|+|||||++|+.+|.+|+.+.|++|.|+|+-+...
T Consensus        26 ~~~~~~~~~~~~--~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         26 PFTGKCFFTNEA--KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCccccCCCCC--CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            344445454432  345699999999999999987643399999999987653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.86  E-value=0.011  Score=58.42  Aligned_cols=33  Identities=33%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  177 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAA  177 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            3699999999999999999998 99999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.82  E-value=0.016  Score=59.32  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +|+|||+|..|+-+|..|+.. +.+|+|+++++
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~  384 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAP  384 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECc
Confidence            799999999999999999998 99999999864

>KOG3855|consensus

Probab=96.81  E-value=0.0016  Score=62.66  Aligned_cols=40  Identities=43%  Similarity=0.635  Sum_probs=33.7

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCC---CceEEEEecCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVP---SWKVLLIEAGDE   58 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~---G~~VlvLE~G~~   58 (385)
                      .-.+.|||||||||++|.+.|..|..++   -+||+++|.+..
T Consensus        32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            3345899999999999999999998752   479999999954

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.80  E-value=0.017  Score=59.02  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~  385 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFAD  385 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCC
Confidence            799999999999999999998 99999999764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.80  E-value=0.01  Score=59.65  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -+++|||+|.+|+-+|..|++. |.+|+++|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            3799999999999999999998 99999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.79  E-value=0.0014  Score=68.85  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=33.6

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            457999999999999999999998 9999999997654

>KOG2960|consensus

Probab=96.79  E-value=0.00055  Score=60.03  Aligned_cols=34  Identities=41%  Similarity=0.611  Sum_probs=31.1

Q ss_pred             cccEEEECCCchHHHHHhHhhc-CCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G   56 (385)
                      +.||||||+|.+|+++|+..++ +|..+|.+||..
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            5699999999999999999996 489999999974

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.79  E-value=0.0013  Score=66.24  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            457999999999999999999998 9999999997654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.79  E-value=0.001  Score=71.38  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ....|+|||+|+||+++|+.|++. |++|+|+|+..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence            456899999999999999999998 99999999854

>KOG1335|consensus

Probab=96.78  E-value=0.0012  Score=62.78  Aligned_cols=36  Identities=28%  Similarity=0.618  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+||++|||+|++|-++|.+.|+. |++..++|+...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence            579999999999999999999998 999999999543

>TIGR02053 MerA mercuric reductase

Probab=96.76  E-value=0.0091  Score=60.15  Aligned_cols=33  Identities=18%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            4799999999999999999998 99999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN03000 amine oxidase

Probab=96.75  E-value=0.0014  Score=69.76  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=34.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...||+|||+|++|+.+|+.|++. |++|+|+|+.+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence            458999999999999999999998 99999999987664

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.75  E-value=0.0017  Score=62.96  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+|+|||+|++|+.+|..|++. |++|+|+|+.+...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g   54 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG   54 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence            345899999999999999999998 99999999987653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.73  E-value=0.014  Score=58.82  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      ++.|++|++++.|+++.-+  ++.+ .|.+. .+|+..++.++ .||+|+|...+..+  |..+|+
T Consensus       224 ~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~l~~~g~  285 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEAD-KVLQAIGFAPRVEGYGLEKTGV  285 (466)
T ss_pred             HHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEeC-EEEECcCcccCCCCCCchhcCc
Confidence            3569999999999999754  3333 34444 24555578996 89999997666554  345554

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.72  E-value=0.015  Score=58.17  Aligned_cols=56  Identities=23%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++.|+++++++.|++|..+   +++..+... ++   ++.++ .||+|+|...+..+|..+|+.
T Consensus       202 ~~~gI~v~~~~~v~~i~~~---~~~~~v~~~-~~---~i~~d-~vi~a~G~~p~~~~l~~~gl~  257 (444)
T PRK09564        202 RENGVELHLNEFVKSLIGE---DKVEGVVTD-KG---EYEAD-VVIVATGVKPNTEFLEDTGLK  257 (444)
T ss_pred             HHCCCEEEcCCEEEEEecC---CcEEEEEeC-CC---EEEcC-EEEECcCCCcCHHHHHhcCcc
Confidence            4568999999999999532   445445432 23   58886 899999987777888888764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.65  E-value=0.002  Score=67.59  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+|+|||+|++|+++|+.|++. |++|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence            467899999999999999999998 9999999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.64  E-value=0.014  Score=63.02  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=44.2

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +++.|++|++++.|++|.-+. .+....|.+.+ |+  .+.++ .||+|+|.-.+..|+..+|+.
T Consensus       197 L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~d-G~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        197 IESMGVRVHTSKNTLEIVQEG-VEARKTMRFAD-GS--ELEVD-FIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             HHHCCCEEEcCCeEEEEEecC-CCceEEEEECC-CC--EEEcC-EEEECCCcccCchHHhhcCcc
Confidence            345699999999999997542 23455566654 33  68896 899999988888887777763

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.64  E-value=0.013  Score=62.89  Aligned_cols=58  Identities=16%  Similarity=0.301  Sum_probs=43.4

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +++.|++|++++.|++|.-+   +++.+|.+.++ +  ++.++ .||+|+|.-.+..|+..+|+.
T Consensus       192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG-~--~i~~D-~Vi~a~G~~Pn~~la~~~gl~  249 (785)
T TIGR02374       192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFKDG-S--SLEAD-LIVMAAGIRPNDELAVSAGIK  249 (785)
T ss_pred             HHHcCCEEEeCCceEEEEcC---CceEEEEECCC-C--EEEcC-EEEECCCCCcCcHHHHhcCCc
Confidence            34568999999999998643   45667777653 3  68896 899999987777777777753

>KOG1276|consensus

Probab=96.63  E-value=0.0028  Score=61.31  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCCCcc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDEDRIF   62 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~~~~   62 (385)
                      .+....+|+|||+|++|+++|+.|++. +...|++.|++++....
T Consensus         7 ~~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen    7 EAVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             cceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence            445567999999999999999999998 23346779998877543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.62  E-value=0.0021  Score=65.13  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            46999999999999999999998 9999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02976 amine oxidase

Probab=96.53  E-value=0.0022  Score=71.03  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=33.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .+||+|||+|++|+++|+.|+++ |++|+|||+.....
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG  729 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG  729 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence            58999999999999999999998 99999999976553

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.49  E-value=0.032  Score=56.04  Aligned_cols=31  Identities=13%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~  304 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRR  304 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeec
Confidence            799999999999999999998 9999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.38  E-value=0.0031  Score=65.16  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...-+|+|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~  172 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL  172 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            3456899999999999999999998 9999999987654

>PRK10262 thioredoxin reductase; Provisional

Probab=96.37  E-value=0.066  Score=51.05  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++++.+
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~  179 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD  179 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence            789999999999999999998 99999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=96.35  E-value=0.0041  Score=64.83  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ....+|+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            4567899999999999999999998 9999999998754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.34  E-value=0.027  Score=56.85  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~  207 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD  207 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence            689999999999999999998 99999999754

>KOG0405|consensus

Probab=96.26  E-value=0.0043  Score=58.54  Aligned_cols=35  Identities=31%  Similarity=0.625  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+||++|||+|-+|...|++.|+. |.+|.|+|..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence            4589999999999999999999998 9999999986

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.26  E-value=0.074  Score=49.75  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. +.+|.++++++
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCc
Confidence            4799999999999999999998 99999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.21  E-value=0.034  Score=56.26  Aligned_cols=52  Identities=17%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      +.|++|++++.|++|..+  ++.+ .|.+.++ |+...+.++ .||+|+|...+...
T Consensus       236 ~~gi~i~~~~~v~~i~~~--~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~  288 (475)
T PRK06327        236 KQGLDIHLGVKIGEIKTG--GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTDG  288 (475)
T ss_pred             HcCcEEEeCcEEEEEEEc--CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCCC
Confidence            468999999999999865  3333 3555443 555678996 79999997766653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.10  E-value=0.0048  Score=61.66  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.|.|||||++|+.+|..|+++ |++|+|.|+-+...
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence            6899999999999999999999 99999999976553

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.02  E-value=0.0065  Score=59.89  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++...+++.|+++++++.|+++..+   +.+ .|.+.+ |+  ++.++ .||+|+|...+..|+..+|+.
T Consensus       191 ~l~~~l~~~GV~i~~~~~V~~i~~~---~~~-~v~l~~-g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~  252 (396)
T PRK09754        191 YLLQRHQQAGVRILLNNAIEHVVDG---EKV-ELTLQS-GE--TLQAD-VVIYGIGISANDQLAREANLD  252 (396)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEEcC---CEE-EEEECC-CC--EEECC-EEEECCCCChhhHHHHhcCCC
Confidence            3444455679999999999998642   222 344433 33  58886 899999988777777777764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.01  E-value=0.0059  Score=61.07  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .|||||+|++|+.+|..|++. ++.+|+|+|+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            589999999999999999986 24599999998764

>PRK12831 putative oxidoreductase; Provisional

Probab=95.84  E-value=0.096  Score=52.82  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .|+|||+|..|+-+|..|++. |.+|+|+++.
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~  313 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRR  313 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCEEEEEeec
Confidence            799999999999999999998 9999999864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.73  E-value=0.011  Score=58.90  Aligned_cols=38  Identities=16%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+..+|||||+|.+|+.+|.+|... +.+|+|+|+.++.
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence            3456899999999999999999876 8899999987764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=95.71  E-value=0.06  Score=54.59  Aligned_cols=54  Identities=9%  Similarity=0.065  Sum_probs=37.1

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      ++.|++|++++.++++...  ++.+ .|++.+++...++.++ .||+|.|-..+..+|
T Consensus       231 ~~~gV~i~~~~~v~~v~~~--~~~~-~v~~~~~~~~~~i~~D-~vl~a~G~~pn~~~l  284 (484)
T TIGR01438       231 EEHGVKFKRQFVPIKVEQI--EAKV-KVTFTDSTNGIEEEYD-TVLLAIGRDACTRKL  284 (484)
T ss_pred             HHcCCEEEeCceEEEEEEc--CCeE-EEEEecCCcceEEEeC-EEEEEecCCcCCCcC
Confidence            3568999999999998754  2332 3444443223468896 899999987777654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG1800|consensus

Probab=95.61  E-value=0.014  Score=55.80  Aligned_cols=36  Identities=28%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .-|+|||||+||..+|..|.++ ++.+|.|+|+-+..
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            3899999999999999999985 68999999997654

>KOG4405|consensus

Probab=95.54  E-value=0.015  Score=56.07  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=37.6

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++++||+||||.|.-=.++|...++. |.+||=||+.++.+
T Consensus         4 ~lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG   44 (547)
T KOG4405|consen    4 ILPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG   44 (547)
T ss_pred             CCchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence            378899999999999999999999998 99999999988764

>KOG1439|consensus

Probab=95.52  E-value=0.0098  Score=57.13  Aligned_cols=40  Identities=35%  Similarity=0.563  Sum_probs=37.1

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      |+++|||||+|.|..=|+.+..|+.+ |.+||.+||.++.+
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG   40 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG   40 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence            46789999999999999999999998 99999999999874

>KOG0399|consensus

Probab=95.30  E-value=0.022  Score=61.23  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=36.8

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      ....-.-|.|||||++|+++|.+|-++ |+.|+|.||.+....
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence            334557899999999999999999999 999999999887654

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.11  E-value=0.096  Score=51.11  Aligned_cols=111  Identities=12%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEE
Q psy10417        216 DIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL  295 (385)
Q Consensus       216 ~~~~~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~  295 (385)
                      ..+++.++++|++......     |..+     |.-.+.++....|...+++.|++|++++.|++|  +  +++ ..|.+
T Consensus        57 ~d~~~fF~~~Gi~~~~e~~-----grvf-----P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~  121 (376)
T TIGR03862        57 VALQDWARGLGIETFVGSS-----GRVF-----PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFET  121 (376)
T ss_pred             HHHHHHHHHCCCceEECCC-----CEEC-----CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEE
Confidence            4566677888987532111     1111     111223333334444667889999999999999  3  222 34544


Q ss_pred             EeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc
Q psy10417        296 VKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR  346 (385)
Q Consensus       296 ~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p  346 (385)
                      ..++  ..++|+ .||||+|+...|.+ =-+|.| ...+++.|+.++...|
T Consensus       122 ~~~~--~~~~a~-~vIlAtGG~s~p~~-Gs~g~g-y~la~~lGh~i~~~~P  167 (376)
T TIGR03862       122 PDGQ--STIEAD-AVVLALGGASWSQL-GSDGAW-QQVLDQRGVSVAPFAP  167 (376)
T ss_pred             CCCc--eEEecC-EEEEcCCCcccccc-CCCcHH-HHHHHHCCCcccCCcC
Confidence            3221  258895 79999999887764 111211 3445566776665554

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.04  E-value=0.022  Score=55.72  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      .||||||+|+||+.+|..|.+. +..+|+|+++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4899999999999999999874 4678999998664

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.99  E-value=0.03  Score=54.41  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~   59 (385)
                      .|||||+|++|+.+|.+|.++  ++.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            389999999999999999642  47899999998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.94  E-value=0.029  Score=47.11  Aligned_cols=31  Identities=32%  Similarity=0.552  Sum_probs=29.1

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|+|+|..|+..|++|+++ |.+|.++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            68999999999999999998 99999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.93  E-value=0.025  Score=55.43  Aligned_cols=38  Identities=37%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .-+++|||+|.+|+.+|..|+++ |++|+++|+.+...+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~  173 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG  173 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence            46999999999999999999999 999999999987643

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.86  E-value=0.026  Score=53.03  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      --|.|||+|.||.-+|+++|++ |.+|.+.|--+.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence            4588999999999999999999 999999996553

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.83  E-value=0.026  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=27.6

Q ss_pred             EEECCCchHHHHHhHhhcC----CCceEEEEecCCC
Q psy10417         27 IIVGAGVGGCVVAHRLSEV----PSWKVLLIEAGDE   58 (385)
Q Consensus        27 iIVGsG~aG~~~A~~La~~----~G~~VlvLE~G~~   58 (385)
                      +|||+|++|++++.+|.+.    ...+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999886    2579999999554

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.04  Score=52.55  Aligned_cols=37  Identities=32%  Similarity=0.409  Sum_probs=35.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .|||||+|.|..=++.+..|+-+ |.+|+.||+.++.+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence            69999999999999999999998 99999999998774

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.63  E-value=0.82  Score=44.13  Aligned_cols=40  Identities=23%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      ......|+|||||-.++-++..|.++ +..+|.++=|+...
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            56677999999999999999999997 22589999887643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.50  E-value=0.32  Score=53.82  Aligned_cols=32  Identities=16%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC-ceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G   56 (385)
                      -.++|||+|..|+-+|..|++. | ..|+|+|..
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~  350 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDAR  350 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccC
Confidence            3689999999999999999998 8 568999864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2403|consensus

Probab=94.19  E-value=0.11  Score=52.12  Aligned_cols=35  Identities=34%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +..||.+|||+|.+|+-+|..|++. |..+.++-+-
T Consensus        53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl   87 (642)
T KOG2403|consen   53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKL   87 (642)
T ss_pred             eeeceeEEEeccchhhhhhhhhhhc-CceEEEEecc
Confidence            3459999999999999999999998 9999998763

>KOG2755|consensus

Probab=94.16  E-value=0.034  Score=50.66  Aligned_cols=34  Identities=41%  Similarity=0.708  Sum_probs=30.4

Q ss_pred             EEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      +||||||+||.+||..||.. |..+|++|-+.+..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            79999999999999999984 67899999987765

>KOG3851|consensus

Probab=94.14  E-value=0.046  Score=51.20  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=34.2

Q ss_pred             CCCCCCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         17 NKRLLDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        17 ~~~~~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      .....++|.|+|||+|.+|+.+|+++.+. +--+|.++|-.+
T Consensus        33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            34557899999999999999999999986 345899999654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.08  E-value=0.049  Score=46.32  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |.|+|+|..|.++|..|+++ |.+|.+..+-.
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            78999999999999999999 99999998854

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.95  E-value=0.058  Score=48.87  Aligned_cols=33  Identities=45%  Similarity=0.638  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++|||+|-.|..+|..|++. |..|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence            589999999999999999998 999999998654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.82  E-value=0.063  Score=50.99  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..++|||+|..|+..|..|+++ |.+|.++.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            3699999999999999999998 99999999974

>KOG1336|consensus

Probab=93.77  E-value=0.38  Score=47.55  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=46.8

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML  325 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~  325 (385)
                      .+++|+++++++.+.++..+. .|+++-|.+.++.   ++.|+ .||+..|+--+..++..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~---~l~ad-lvv~GiG~~p~t~~~~~  320 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGK---TLEAD-LVVVGIGIKPNTSFLEK  320 (478)
T ss_pred             HHhcCeEEEEecceeecccCC-CCcEEEEEeccCC---EeccC-eEEEeeccccccccccc
Confidence            346899999999999999875 4899999998864   79996 89999998877777664

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.36  E-value=0.085  Score=46.02  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |.|||+|..|..+|..++.+ |++|.++|..+
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            68999999999999999998 99999999854

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0404|consensus

Probab=93.34  E-value=0.071  Score=47.50  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      +...+.+.+|+++++|+.+.+..-+  ++...++.+++  .|++-.++.+ .+..+-|--.+.++|.
T Consensus       198 Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v~-GlFf~IGH~Pat~~l~  261 (322)
T KOG0404|consen  198 MQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPVS-GLFFAIGHSPATKFLK  261 (322)
T ss_pred             HHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCcccccccc-eeEEEecCCchhhHhc
Confidence            3445667899999999999888766  56666777763  4666688885 7999999555555554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.34  E-value=0.084  Score=53.34  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=32.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|.+|+-+|..|++. |.+|+++|+++..
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~i  215 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRI  215 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence            799999999999999999998 9999999998765

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.20  E-value=0.098  Score=45.84  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||.|..|+++|..||++ |++|+.+|...
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            378999999999999999998 99999999764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.17  E-value=0.095  Score=52.38  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|.+|+-+|..|++. |.+|+|+|+++..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            699999999999999999998 9999999998765

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=92.76  E-value=0.13  Score=48.99  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|+..|..|+++ |.+|.++.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            4699999999999999999998 99999999975

>PRK07846 mycothione reductase; Reviewed

Probab=92.62  E-value=0.13  Score=51.66  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            3799999999999999999998 9999999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.61  E-value=0.12  Score=52.20  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++...
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il  210 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI  210 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence            799999999999999999998 99999999988653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.61  E-value=0.13  Score=51.74  Aligned_cols=34  Identities=35%  Similarity=0.533  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|.+|+-+|..|++. |.+|+++|+++..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~l  205 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQL  205 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            799999999999999999998 9999999998765

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=92.55  E-value=0.099  Score=51.09  Aligned_cols=44  Identities=16%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA  316 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa  316 (385)
                      ...+.+|+++++|++|..+  +++++ |.+.+++   ++.|+ .||+|+..
T Consensus       220 ~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~~g~---~~~ad-~VI~a~p~  263 (450)
T PF01593_consen  220 EELGGEIRLNTPVTRIERE--DGGVT-VTTEDGE---TIEAD-AVISAVPP  263 (450)
T ss_dssp             HHHGGGEESSEEEEEEEEE--SSEEE-EEETTSS---EEEES-EEEE-S-H
T ss_pred             hhcCceeecCCcceecccc--ccccc-cccccce---EEecc-eeeecCch
Confidence            3456699999999999998  55553 4444443   78896 79999885

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.46  E-value=0.13  Score=51.65  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~i  201 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERV  201 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence            799999999999999999998 9999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.39  E-value=0.15  Score=50.55  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~   59 (385)
                      ++|+|||+|++|+++|.+|.+.  +-.+|.|+|.-+..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            6899999999999999999984  12239999986544

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.35  E-value=0.16  Score=50.92  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      -++|||+|..|+-.|.-+++- |.+|+|||+++..-+
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp  210 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP  210 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC
Confidence            489999999999999999998 999999999998754

>PRK06370 mercuric reductase; Validated

Probab=92.14  E-value=0.16  Score=51.22  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l  207 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLL  207 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCC
Confidence            3799999999999999999998 99999999988653

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.99  E-value=0.15  Score=48.12  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      .+.|||+|..|+.+|..|+++ |.+|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            479999999999999999998 999999998

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.97  E-value=0.15  Score=54.95  Aligned_cols=34  Identities=12%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             EEEECCCchHHHHHhHhhcC--CCceEEEEecCCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGDED   59 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~~~   59 (385)
                      +||||+|++|+.+|.+|.+.  .+.+|+|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999988763  36799999998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.93  E-value=0.21  Score=50.54  Aligned_cols=32  Identities=31%  Similarity=0.601  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|+|||+|.+|+.+|..|+++ |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            699999999999999999998 99999999765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.91  E-value=0.17  Score=47.65  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+.|||+|..|..+|..|+++ |.+|.++.+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            379999999999999999998 9999999984

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.91  E-value=0.16  Score=50.72  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l  183 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI  183 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence            699999999999999999998 9999999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.91  E-value=0.18  Score=50.82  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence            699999999999999999998 9999999998765

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=91.89  E-value=0.17  Score=50.28  Aligned_cols=34  Identities=29%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|.+|+-+|..|++. |.+|+++++++..
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  172 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI  172 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence            799999999999999999998 9999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.87  E-value=0.16  Score=48.32  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            589999999999999999998 99999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=91.72  E-value=0.19  Score=50.54  Aligned_cols=34  Identities=41%  Similarity=0.554  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  210 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRL  210 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            699999999999999999998 9999999998755

>TIGR02731 phytoene_desat phytoene desaturase

Probab=91.64  E-value=0.36  Score=48.35  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +|+|||+|++|+++|++|+++ |++|+|+|+.+...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G   35 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG   35 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            489999999999999999998 99999999987654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=91.55  E-value=0.2  Score=54.29  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHhHhhcC---CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV---PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~---~G~~VlvLE~G~~~   59 (385)
                      .+||||+|++|+.+|.+|.+.   .+.+|+|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            799999999999999999753   36899999998764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=91.35  E-value=0.22  Score=50.13  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRI  204 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence            799999999999999999998 9999999998765

>TIGR03452 mycothione_red mycothione reductase

Probab=91.25  E-value=0.22  Score=50.01  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l  204 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL  204 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            799999999999999999998 9999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.08  E-value=0.22  Score=50.11  Aligned_cols=32  Identities=25%  Similarity=0.518  Sum_probs=29.6

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      |.|||.|.+|+++|..|+++ |++|++.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence            79999999999999999998 999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=90.86  E-value=0.26  Score=49.43  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=31.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence            589999999999999999998 9999999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.80  E-value=0.3  Score=38.78  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.8

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |||+|.|..|..+|..|.+. +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence            69999999999999999996 89999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.80  E-value=0.27  Score=47.00  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|...|..++.+ |++|++.|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            388999999999999999998 99999999764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.74  E-value=0.18  Score=46.87  Aligned_cols=47  Identities=30%  Similarity=0.442  Sum_probs=36.3

Q ss_pred             hhhhcCCC--CCCCcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417         11 EEFLYGNK--RLLDEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE   58 (385)
Q Consensus        11 ~~~~~~~~--~~~~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~   58 (385)
                      ++.+++..  ......-|+|||.|..|+.+|..||+. | .+++++|....
T Consensus        16 ~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V   65 (268)
T PRK15116         16 TARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV   65 (268)
T ss_pred             HHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence            34444443  224567899999999999999999998 8 69999996543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.70  E-value=0.26  Score=47.75  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|++.|..||+. |+.|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            478999999999999999998 99999999743

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.67  E-value=0.25  Score=47.49  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|+++ |++|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            489999999999999999998 99999999853

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.57  E-value=0.29  Score=51.50  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..-
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll  348 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLL  348 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccc
Confidence            699999999999999999998 99999999988653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.48  E-value=0.29  Score=45.98  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+++ |.+|.++|+..
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            489999999999999999998 99999999754

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.47  E-value=0.28  Score=49.11  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|.+|+.+|..|+++ |++|.+.|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            4689999999999999999998 99999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=90.35  E-value=0.19  Score=49.32  Aligned_cols=38  Identities=34%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             cccEEEECCCchHHHHHhHhhcC-C-----------CceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV-P-----------SWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~-~-----------G~~VlvLE~G~~~~   60 (385)
                      .-+++|||||+.|.=.|-+|++. +           ..+|.++|+++..-
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL  204 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL  204 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence            45799999999999999999863 1           13999999999763

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.30  E-value=0.28  Score=46.09  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|..+|..|+++ |++|+++|+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            378999999999999999998 99999999864

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.30  E-value=0.31  Score=45.79  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|.|||+|..|...|..|+.+ |++|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            588999999999999999998 999999998653

>PRK04148 hypothetical protein; Provisional

Probab=90.29  E-value=0.29  Score=40.34  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=28.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -.+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence            358999999 888889999998 999999997653

>PRK06116 glutathione reductase; Validated

Probab=90.28  E-value=0.32  Score=48.79  Aligned_cols=34  Identities=26%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++++++..
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  202 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAP  202 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            799999999999999999998 9999999998754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=90.26  E-value=0.33  Score=49.01  Aligned_cols=35  Identities=34%  Similarity=0.513  Sum_probs=32.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l  213 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVL  213 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCC
Confidence            689999999999999999998 99999999987653

>KOG3923|consensus

Probab=90.09  E-value=0.32  Score=45.28  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=26.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcC------CCceEEEEec
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV------PSWKVLLIEA   55 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~------~G~~VlvLE~   55 (385)
                      ..+++|||+|..||++|..+.+.      |-.+|.|++-
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            45899999999999999776662      4468888874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.00  E-value=0.35  Score=43.00  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      --++|||+|-.|...|..|.++ |.+|+|+++
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~   41 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISP   41 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Confidence            3689999999999999999998 999999975

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=89.97  E-value=0.32  Score=50.24  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++++++..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence            3799999999999999999998 9999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.95  E-value=0.29  Score=38.39  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .-.++|||+|..|..-+..|.+. |.+|+|+-.-
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            34689999999999999999998 9999999864

>PTZ00058 glutathione reductase; Provisional

Probab=89.87  E-value=0.32  Score=50.20  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i  272 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL  272 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence            3699999999999999999998 9999999998754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.87  E-value=0.36  Score=47.15  Aligned_cols=32  Identities=31%  Similarity=0.557  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      +++|||+|-.|.++|+.||++ | .+|++.+|..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence            689999999999999999998 7 8999999963

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.85  E-value=0.37  Score=48.15  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l  194 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLFL  194 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            799999999999999999998 99999999987553

>PLN02507 glutathione reductase

Probab=89.82  E-value=0.35  Score=49.28  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~  238 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP  238 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence            699999999999999999998 9999999998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=89.76  E-value=0.37  Score=42.77  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      ....|+|||+|..|+.+|..|++. |. +++++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            346799999999999999999998 98 69999975

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.74  E-value=0.39  Score=40.83  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=27.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEe
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIE   54 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE   54 (385)
                      --++|||+|..|.--|..|.+. |.+|+|+.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence            3589999999999999999998 99999994

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=89.38  E-value=0.4  Score=39.58  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCce-EEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G   56 (385)
                      .--++|||+|-+|-.+|..|++. |.+ |.|+-|-
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            44789999999999999999998 776 9999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.20  E-value=0.47  Score=44.65  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|..+|..|+++ |.+|++.|+..
T Consensus         6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            489999999999999999998 99999999754

>PLN02546 glutathione reductase

Probab=89.18  E-value=0.42  Score=49.39  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i  287 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV  287 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence            799999999999999999998 9999999998754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.17  E-value=0.42  Score=45.00  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+.+ |.+|+++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            488999999999999999998 99999999754

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.94  E-value=0.43  Score=45.69  Aligned_cols=32  Identities=31%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|+++ |.+|.++.|..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence            378999999999999999998 99999999843

>PRK13748 putative mercuric reductase; Provisional

Probab=88.85  E-value=0.43  Score=49.27  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARL-GSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence            699999999999999999998 99999999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.77  E-value=0.47  Score=45.76  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ....-|+|||+|..|+.+|..|+.+ |. ++.++|...
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence            3456799999999999999999998 88 999999854

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.75  E-value=0.44  Score=45.93  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      +.-|+|||.|..|+.+|..|+.+ |. ++.++|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            45799999999999999999998 87 899999865

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=88.59  E-value=0.47  Score=39.08  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      .-|+|||+|..|+.+|..|+.. |. ++.++|....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence            4589999999999999999998 87 7999997643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14694 putative mercuric reductase; Provisional

Probab=88.56  E-value=0.52  Score=47.54  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|++++++.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            699999999999999999998 99999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=88.45  E-value=0.45  Score=46.05  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCce-EEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+ |.|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence            699999999999999999987 886 99999764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.44  E-value=0.46  Score=44.47  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|..+|..|+++ |.+|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence            489999999999999999998 99999999754

>PRK14727 putative mercuric reductase; Provisional

Probab=88.31  E-value=0.5  Score=47.88  Aligned_cols=32  Identities=13%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++++..
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~  221 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARST  221 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence            699999999999999999998 99999999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=88.27  E-value=0.56  Score=38.97  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=28.1

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      |+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus         2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            78999999999999999998 87 799999754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.27  E-value=0.53  Score=41.94  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      -|+|||+|..|..-|..|.+. |.+|+|+..
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp   40 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAE   40 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCEEEEEcC
Confidence            689999999999999999998 999999975

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.25  E-value=0.6  Score=44.74  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|+++ |++|.+++|..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999853

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.00  E-value=0.58  Score=41.50  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      --++|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3599999999999999999998 9999999865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PTZ00052 thioredoxin reductase; Provisional

Probab=87.85  E-value=0.51  Score=48.08  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence            699999999999999999998 9999999974

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=87.84  E-value=0.78  Score=39.50  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             CCcccEEEECCCc-hHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGV-GGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~-aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .....++|||+|- +|..+|..|.+. |.+|.++.|-
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            4567899999995 699999999998 9999999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.81  E-value=0.51  Score=44.82  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -+.|+|+|..|+..|++|+++ |..|+++=|...
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence            378999999999999999999 889999988764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=87.76  E-value=0.59  Score=46.50  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcC-------------CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-------------PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-------------~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|.+|++.             ++.+|+++|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            799999999999999999861             27899999998754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=87.61  E-value=0.77  Score=44.70  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +.+.+|+|.||-|++-+.+|..|.+..+.+++.|||-+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            3567999999999999999999999856899999997654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=87.55  E-value=0.64  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.073  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHhHh---hcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRL---SEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~L---a~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..+   .+. |.+|+|+|+++...
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il  226 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMIL  226 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccc
Confidence            699999999999999655   445 89999999998653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.54  E-value=0.66  Score=40.17  Aligned_cols=31  Identities=26%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      |+|||.|..|+.+|..|++. |. ++.++|...
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            78999999999999999998 87 599999754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.30  E-value=0.65  Score=44.10  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|..+|..|+++ |++|+++++..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999998 99999999754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=87.21  E-value=0.67  Score=44.00  Aligned_cols=31  Identities=29%  Similarity=0.531  Sum_probs=28.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      -+.|||+|..|+.+|..|+.. |. +|+++|.-
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            478999999999999999997 76 89999983

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.20  E-value=0.64  Score=45.40  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+++|||+|.+|..+|..|... |.+|.++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence            45699999999999999999998 9999999975

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=87.08  E-value=0.7  Score=45.82  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||.|..|+..|..|+++ |++|+++++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence            478999999999999999998 99999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.04  E-value=0.7  Score=43.54  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+.+ |.+|.+.|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            389999999999999999998 99999999754

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=86.84  E-value=0.74  Score=43.78  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~   57 (385)
                      .+.|||+|..|+++|..|+.+ |  ..|.++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence            489999999999999999998 8  5899999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=86.79  E-value=0.74  Score=40.87  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..+.-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence            4456899999999999999999998 86 899999764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02612 phytoene desaturase

Probab=86.70  E-value=1.1  Score=46.41  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=36.1

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA  316 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa  316 (385)
                      +++.|.+|++++.|++|..++ ++++++|++.+ |+  .+.++ .||+|+..
T Consensus       318 l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~-G~--~~~ad-~VI~a~p~  364 (567)
T PLN02612        318 FQSLGGEVRLNSRIKKIELND-DGTVKHFLLTN-GS--VVEGD-VYVSATPV  364 (567)
T ss_pred             HHhcCCEEEeCCeeeEEEECC-CCcEEEEEECC-Cc--EEECC-EEEECCCH
Confidence            345799999999999999864 46777887754 43  57885 79999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.55  E-value=0.76  Score=43.72  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|...|..|+++ |..|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            489999999999999999998 99999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=86.45  E-value=0.75  Score=45.68  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -+.|||.|..|++.|..|+++ |++|+++|+.+.
T Consensus         5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~   37 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH   37 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence            489999999999999999998 999999997543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.08  E-value=0.81  Score=42.97  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      -.++|||+|.+|.++|+.|++. |. +|.|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence            4699999999999999999998 76 799999853

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=85.95  E-value=0.93  Score=38.90  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...-|+|+|+|.+|.-||.-|... |.+|.++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence            346899999999999999988888 99999999753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.50  E-value=0.94  Score=43.00  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..|.|||+|..|..+|..|+++ |++|.+..|...
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~~   38 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRSG   38 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            3589999999999999999998 999999998643

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=85.46  E-value=0.67  Score=42.42  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCC----------CceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVP----------SWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~----------G~~VlvLE~G~   57 (385)
                      .....|+|||+|..|+.+|..||+..          |.+++|+|...
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            45678999999999999999999861          23889998654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK07233 hypothetical protein; Provisional

Probab=85.16  E-value=1.4  Score=43.60  Aligned_cols=53  Identities=21%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      .+++.|++|+++++|++|..+  +++++++.. + ++  ++.++ .||+|+..-..+.||
T Consensus       207 ~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~~-~-~~--~~~ad-~vI~a~p~~~~~~ll  259 (434)
T PRK07233        207 AIEARGGEIRLGTPVTSVVID--GGGVTGVEV-D-GE--EEDFD-AVISTAPPPILARLV  259 (434)
T ss_pred             HHHhcCceEEeCCCeeEEEEc--CCceEEEEe-C-Cc--eEECC-EEEECCCHHHHHhhc
Confidence            445678999999999999987  556665542 2 32  68885 799999875555543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=85.13  E-value=0.85  Score=41.29  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc---eEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW---KVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~---~VlvLE~G~~   58 (385)
                      --++|+|+|.+|..+|..|++. |.   +|.+++|-+.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~gl   62 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKGV   62 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCCc
Confidence            4699999999999999999998 86   5999999753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=85.03  E-value=1  Score=45.08  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +|+|||+|.+|.-+|.+|++. |.+|.++=|.+..
T Consensus       177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~  210 (443)
T COG2072         177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH  210 (443)
T ss_pred             eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence            799999999999999999998 9999999987644

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=84.85  E-value=1.1  Score=40.19  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.||| +|..|.++|..|+++ |.+|.+..+..
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence            378997 799999999999998 99999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=84.80  E-value=0.96  Score=42.59  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCce-EEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~   57 (385)
                      -++|+|+|-+|.++|..|++. |.+ |.|+.|..
T Consensus       128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~  160 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD  160 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence            589999999999999999998 876 99998853

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=84.25  E-value=1.1  Score=44.20  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..-.|+|+|.|..|..+|..|... |.+|+++|..+.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChh
Confidence            345799999999999999998887 999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.25  E-value=1.2  Score=40.61  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      ....|+|||.|..|+.+|..|+.. |. ++.++|....
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~v   59 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTV   59 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcc
Confidence            347899999999999999999998 64 7888887543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=84.05  E-value=1.1  Score=40.58  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ...-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            356799999999999999999998 75 788887654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=83.98  E-value=1.1  Score=45.53  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|...|..|+.+ |++|+|.++.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            488999999999999999998 99999999854

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.95  E-value=1.6  Score=32.82  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      ..-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3346999999999999999999964678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.95  E-value=1.1  Score=44.95  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|+|+|..|.++|..|+++ |.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            379999999999999999998 99999999764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=83.77  E-value=1.2  Score=39.87  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ...-|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            456899999999999999999998 87 599999754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=83.55  E-value=1.5  Score=36.39  Aligned_cols=31  Identities=19%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|+|+|..+..+|.-++.- |++|+|+|-.+
T Consensus         1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            48999999999999888888 99999999654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=83.54  E-value=1.2  Score=44.74  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      =.|+|||+|..|+-+|..|++. |. +|+++++.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence            3799999999999999999997 87 899999753

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=83.50  E-value=1.3  Score=41.97  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=28.5

Q ss_pred             EEEECCCchHHHHHhHhhcCCC--ceEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~   58 (385)
                      |.|||+|..|.++|+.|+.. |  ..|.++++...
T Consensus         3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~   36 (306)
T cd05291           3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE   36 (306)
T ss_pred             EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence            78999999999999999998 7  47999998653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=83.50  E-value=1.2  Score=45.43  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|.|||+|.-|.-+|..|+.+ |+.|.+.|+...
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            388999999999999999998 999999997553

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=83.46  E-value=1.4  Score=44.97  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|.-|.-+|..|+++ |+.|++.|+.+
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            489999999999999999998 99999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=83.41  E-value=1.2  Score=44.85  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|+++|..||++ .|.+|+.+|...
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            489999999999999999987 258899999643

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.35  E-value=1.2  Score=47.51  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|.-+|..+|.+ |++|+++|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence            489999999999999999998 99999999764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=83.34  E-value=1.4  Score=40.44  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .+..|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            457899999999999999999998 75 899998754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=83.31  E-value=1.3  Score=41.70  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..-+|+|||+|.+|.-+|.-+.-- |.+|++||...
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence            356899999999999999888887 99999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.09  E-value=1.2  Score=41.54  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||.|..|.+.|..|+++ |.+|+++++..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999998 99999999753

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=83.00  E-value=1.3  Score=47.31  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|.-+|..+|.+ |+.|+++|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=82.92  E-value=1.3  Score=44.75  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .|+|||+|..|+=+|.+|++. +.+|.++.+++.
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence            699999999999999999998 999999998764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=82.87  E-value=2.9  Score=42.21  Aligned_cols=61  Identities=20%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----------NGHKRSVFARKEVIVSSGAFNS-PKLLMLSGV  328 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----------~g~~~~i~a~k~VVlAaGa~~t-p~LL~~Sgi  328 (385)
                      +++.|+++++++.+++|.-+  ++++++|++.+           .++..++.++ .||+|.|...+ ..|+...|+
T Consensus       339 ~~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl  411 (471)
T PRK12810        339 AHEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV  411 (471)
T ss_pred             HHHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence            34579999999999999754  67898888652           2455689996 89999995444 346555554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=82.70  E-value=1.4  Score=41.47  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||.|..|..+|..|... |.+|.+.+|..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4689999999999999999998 99999999853

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=82.57  E-value=1.4  Score=41.69  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|.-|.-+|..+|.. |+.|++.|...
T Consensus         5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~   36 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDISP   36 (307)
T ss_pred             EEEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence            478999999999999999996 99999999863

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=82.54  E-value=1.4  Score=39.84  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .+.-|+|||.|..|+.+|..|+.. |. +++++|...
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            356899999999999999999998 76 788888653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08017 oxidoreductase; Provisional

Probab=82.50  E-value=1.6  Score=39.58  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=28.0

Q ss_pred             EEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|+|+ |..|..+|..|+++ |.+|+++.+..
T Consensus         5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~   36 (256)
T PRK08017          5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP   36 (256)
T ss_pred             EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            889998 99999999999998 99999998753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=82.31  E-value=1.6  Score=38.59  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..+.-|+|||.|..|+.+|..|+.. |. +++++|...
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~   53 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRL   53 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence            3457899999999999999999998 86 599998654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=82.07  E-value=1.6  Score=40.54  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|+|+|.+|.++|..|++. |.+|.++.|..
T Consensus       118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3689999999999999999998 89999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.97  E-value=1.2  Score=42.57  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      --||.|||+|..|.-+|..||-- =..|+|||=.+.
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e  388 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE  388 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence            34899999999999999999985 568999996554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=81.96  E-value=1.4  Score=45.14  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -++|+|+|.+|.++|+.|++. |.+|+++.|.
T Consensus       381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~  411 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT  411 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            589999999999999999998 8999999874

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=81.89  E-value=1.6  Score=41.12  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=28.4

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      |+|||+|.-|+.+|..|+.. |. +++++|.+..
T Consensus         2 VLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D~V   34 (307)
T cd01486           2 CLLLGAGTLGCNVARNLLGW-GVRHITFVDSGKV   34 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEe
Confidence            79999999999999999998 76 7999987653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.86  E-value=1.5  Score=43.92  Aligned_cols=32  Identities=38%  Similarity=0.522  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|+|+|+|..|..+|..|.+. |.+|+++|+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            589999999999999999998 99999999854

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=81.78  E-value=1.7  Score=38.35  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..+.-|+|||.|..|+.+|..|+.. |. ++.++|-..
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~   55 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT   55 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence            3467899999999999999999998 87 688988653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08223 hypothetical protein; Validated

Probab=81.75  E-value=1.6  Score=40.97  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..+.-|+|||.|..|+.+|..||.+ |. ++.++|...
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~   61 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV   61 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            4467899999999999999999998 76 788888654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=81.73  E-value=1.7  Score=37.00  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=27.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|-|||-|..|...|.+|+++ |++|.+.++..
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence            478999999999999999998 99999999753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=81.64  E-value=1.4  Score=41.56  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      |.|||+|..|..+|..|+.. |. .|+++|....
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence            47999999999999999987 76 9999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=81.39  E-value=1.7  Score=39.58  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=27.9

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      |+|||+|..|+.++..|+.. |. ++.|+|....
T Consensus         2 VlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D~V   34 (234)
T cd01484           2 VLLVGAGGIGCELLKNLALM-GFGQIHVIDMDTI   34 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEE
Confidence            78999999999999999998 65 7899987543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=81.18  E-value=1.6  Score=43.49  Aligned_cols=32  Identities=19%  Similarity=0.435  Sum_probs=28.9

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc------eEEEEecCCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW------KVLLIEAGDE   58 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~------~VlvLE~G~~   58 (385)
                      |+|||+|..|+-++..||.. |.      ++.|+|....
T Consensus         2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I   39 (435)
T cd01490           2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI   39 (435)
T ss_pred             EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence            79999999999999999998 87      8999997654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=81.11  E-value=2.3  Score=32.38  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=27.4

Q ss_pred             EEEECCCchHHHHHhHhhcCCC---ceEEEE-ecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPS---WKVLLI-EAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G---~~VlvL-E~G~   57 (385)
                      +.|||+|-.|.++|..|.++ |   .+|+++ ++.+
T Consensus         2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence            57899999999999999998 9   899966 8754

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=80.92  E-value=1.7  Score=45.10  Aligned_cols=36  Identities=25%  Similarity=0.493  Sum_probs=31.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~   59 (385)
                      ..-|+|||+|.-|+.+|..|+.. |. +++++|.+...
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~Ve  374 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGKVS  374 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEEC
Confidence            45799999999999999999998 76 78999977543

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=80.72  E-value=1.6  Score=37.14  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .---++|+|-|..|-.+|..|... |.+|.|.|..+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence            334689999999999999999998 99999999865

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=80.72  E-value=2  Score=37.64  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=28.5

Q ss_pred             ccEEEECC-CchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            46899996 99999999999998 9999999775

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06223 malate dehydrogenase; Reviewed

Probab=80.46  E-value=2  Score=40.66  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=28.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .|.|||+|..|..+|..|+.. |. .|.++|.-.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            589999999999999999997 65 999999844

>TIGR00936 ahcY adenosylhomocysteinase

Probab=80.44  E-value=2  Score=42.38  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...--|+|||.|..|..+|..|... |.+|+|+|..+
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence            3445799999999999999999987 99999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=80.36  E-value=1.9  Score=40.32  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      -.++|+|+|-+|.++|..|++. | .+|.|+.|..
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~  157 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV  157 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            3689999999999999999998 8 7999998853

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=80.22  E-value=1.7  Score=46.56  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|.-+|..+|.+ |++|+++|..+
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~  368 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP  368 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence            489999999999999999998 99999999764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	385
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		1e-29
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		5e-29
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		6e-29
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		7e-29
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		5e-25
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		5e-24
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		3e-22
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		4e-18
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		5e-09
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		3e-07
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		4e-07

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 177/360 (49%), Gaps = 47/360 (13%)
Query: 23  EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG--DEDRIFTDLVLIS-HYYQFTPYNW 79
           ++D+++            RL+E P   VL++EAG  DE+ +  +  L++      + ++W
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
            + TT Q     G       +P+G+ +GGS+ ++  +  RG   DF+ + ++ G+ GW++
Sbjct: 62  NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           D++ ++ +K E +  P  N     HNT+G    E+ P                     H 
Sbjct: 118 DNIQQFVRKNEMVVPPADN-----HNTSG----EFIP-------------------AVHG 149
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELG---YTNIDYNNPNTKIGFSIVQSTIKNGRRMT 255
           TNG +++    + + L D  L +++E     + N D       +G S   +++ NG+R +
Sbjct: 150 TNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGT-GHPLGISWSIASVGNGQRSS 208
Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKR-----SVFARKEV 310
           +S AYL+P   R NL V+ N++V K++    +        V+   +      +V A+KEV
Sbjct: 209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEV 268
Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHVAYSALTF-GINKTF 368
           ++S+G+  +P LL LSG+G    L+ +GI  +V +  VG NL +H+   A  F   N+TF
Sbjct: 269 VLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTF 328

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23  EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
           E+D+I+            RLSE P+  V L+EAG +DR   +++ +  + +   + Y+W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
           +   PQ+N      N+     + K +GG +  N  I       D +EWE+  G TGW+ +
Sbjct: 73  YPIEPQENG-----NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
                +K+ E                    N +  P                 D  +H  
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
           +G +++   P K       L + ++ G     +N   T + G +  Q   + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
            +Y+ PI+++ N  ++   R  +++ D   ++  GV++V +  GH   + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           A ++PKLLMLSG+GP  HL E GI V+ D   VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23  EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
           E+D+I+            RLSE P+  V L+EAG +DR   +++ +  + +   + Y+W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
           +   PQ+N      N+     + K +GG +  N  I       D +EWE+  G TGW+ +
Sbjct: 73  YPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
                +K+ E                    N +  P                 D  +H  
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
           +G +++   P K       L + ++ G     +N   T + G +  Q   + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
            +Y+ PI+++ N  ++   R  +++ D   ++  GV++V +  GH   + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           A ++PKLLMLSG+GP  HL E GI V+ D   VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 23  EYDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNWG 80
           E+D+I+            RLSE P+  V L+EAG +DR   +++ +  + +   + Y+W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFD 139
           +   PQ+N      N+     + K +GG +  N  I       D +EWE+  G TGW+ +
Sbjct: 73  YPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
                +K+ E                    N +  P                 D  +H  
Sbjct: 128 AAWPLYKRLE-------------------TNEDAGP-----------------DAPHHGD 151
Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKI-GFSIVQSTIK-NGRRMTAS 257
           +G +++   P K       L + ++ G     +N   T + G +  Q   + +G R ++S
Sbjct: 152 SGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSG 315
            +Y+ PI+++ N  ++   R  +++ D   ++  GV++V +  GH   + AR EV++S+G
Sbjct: 212 VSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTG 270
Query: 316 AFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           A ++PKLLMLSG+GP  HL E GI V+ D   VG++L +H
Sbjct: 271 AIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 156/336 (46%), Gaps = 50/336 (14%)
Query: 25  DFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHY--YQFTPYNWGFK 82
           D +I            RLSE P  +VLLIEAG+E     D+   + +   Q   Y+W ++
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP-TDPDIWNPAAWPALQGRSYDWDYR 77
Query: 83  TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNTGWSFDDV 141
           T  Q     G       W +G+ +GGS+ ++   + RG P+DF  W ++ G+  W +D++
Sbjct: 78  TEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133
Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
           L     F+ I    L  D ++     L              I L      +D V      
Sbjct: 134 LPV---FQAIEDHPLGGDGIHGKGGPL-------------PIHLP-----ADEV------ 166
Query: 202 LLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYL 261
                     S L+  F+++   LG   ++ +N    IG +     I++GRR+TA+ A+L
Sbjct: 167 ----------SPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWL 216
Query: 262 -KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP 320
            K +  R NL ++  SRV ++ ++    Q + +E+V       VFA  ++++ +GA  SP
Sbjct: 217 TKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFA-DQIVLCAGALESP 273
Query: 321 KLLMLSGVGPREHLTELGIPVVQDL-RVGDNLMEHV 355
            LLM SG+GP + L   G+  + D+  +G NL +H+
Sbjct: 274 ALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHL 309

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 46/339 (13%)
Query: 24  YDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG---DEDRIFTDLVLISHYYQFTPYNWG 80
           +DF+I            RL+E P+  VL++EAG    ED         +   + + Y+W 
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 81  FKTTPQKN---ACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWS 137
           +KTT  +      +  PN +     GK +GGS+ +N   +  G    F++WE  G   W+
Sbjct: 67  YKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           +D ++ Y +K              YH+   L    YSP          K+G      + H
Sbjct: 122 WDPLVPYLRK-----------SATYHDDPRL----YSPE-------LEKIGGGGPIPISH 159
Query: 198 NTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
                L  E +P++  L+    K+ K +G   I+        G +    TI  G+R + S
Sbjct: 160 AE---LIDEMAPFRENLT----KAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQR-SGS 211
Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGA 316
             ++K   ++ N+ ++      ++II+   +  KGV +V   G++ + FA +EVI+S G 
Sbjct: 212 FLFVK---NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGV 268
Query: 317 FNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEH 354
           F +PKLLMLSG+GP   L+  GI  + D R VG NLM+H
Sbjct: 269 FETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDH 307

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 154/351 (43%), Gaps = 61/351 (17%)
Query: 25  DFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAG----DEDRIFTDLVLISHYYQFTPYNWG 80
           D+II            RL+E P+  VL+IE+G    D   I  DL      +  +  +  
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFG-SSVDHA 79
Query: 81  FKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFD 139
           ++T       L   N   L   G G+GGST++NG  +TR      + WE++ GN GW++D
Sbjct: 80  YETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWD 134
Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
           +V  Y  + ER   P        H                          FN+    H  
Sbjct: 135 NVAAYSLQAERARAPNAKQIAAGH-------------------------YFNASC--HGV 167
Query: 200 NGLLNV-------EYSP----YKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTI 248
           NG ++        +YSP      S + D  + + K+ G       +P+   G S+  +T+
Sbjct: 168 NGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGC-----GDPH---GVSMFPNTL 219
Query: 249 KNGR-RMTASKAYLKPIIDRTNLHVIKNSRVVKIII--DPISKQAKGVEL-VKNGHKRSV 304
              + R  A++ +L P   R NL V+    V K+++  +  + +A GVE     G+  +V
Sbjct: 220 HEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNV 279
Query: 305 FARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHV 355
           +A+ EV++++G+  SP +L  SG+G +  L  LGI  V DL VG NL +  
Sbjct: 280 YAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQT 330

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 42/341 (12%)
Query: 24  YDFIIXXXXXXXXXXXHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWG--F 81
           YD+II            +L+E P  KVL+IE G  +    D  +I       P  +G  F
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES--NDGAIIED-----PNAYGQIF 77
Query: 82  KTTPQKN-ACLGLPNNQCL-WPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
            TT  +N   + L NN+      GKG+GGST+ING+ +TR      + WE + G  GW++
Sbjct: 78  GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           D++ +Y KK E    P        H+ N   +      +S   D                
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARD---------------- 181
Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGRRMTA 256
            NG     +SP    L    + +   LG     D+   + + G S++ + + +N  R+ A
Sbjct: 182 -NGQ---PWSPIMKAL----MNTVSALGVPVQQDFLCGHPR-GVSMIMNNLDENQVRVDA 232
Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISK--QAKGVELVKN-GHKRSVFARKEVIVS 313
           ++A+L P   R+NL ++    V K++    +   QA GV    N      VFA+ EV+++
Sbjct: 233 ARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLA 292
Query: 314 SGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
           +G+  SP +L  SG+G +  L +  +  + DL VG N+ + 
Sbjct: 293 AGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQ 333

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 238 KIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV- 296
           + G  +  ST  N     AS   L    D  NL V  ++ V KII    S     + ++ 
Sbjct: 178 EAGTRLTGSTFDNNGTRHASDELLNKG-DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIY 236
Query: 297 --KNGHKRSVFARKE--VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
              NG     F R E  VIVS+G   SP+LL+LSGVGP  +L+ L IPVV
Sbjct: 237 KDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVV 286

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 240 GFSIVQSTIKN-GRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELV 296
           G  I  ST  N G R  A +   K   +  NL V  ++ V KII    P       +   
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD 237
Query: 297 KNGHKRSVFARK--EVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
            NG     F R   EVIVS+G   +P+LL+LSGVGP  +L+ L IPVV
Sbjct: 238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 240 GFSIVQSTIKN-GRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELV 296
           G  I  ST  N G R  A +   K   +  NL V  ++ V KII    P       +   
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD 237
Query: 297 KNGHKRSVFARK--EVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV 342
            NG     F R   EVIVS+G   +P+LL+LSGVGP  +L+ L IPVV
Sbjct: 238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-131
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-131
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	1e-127
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-123
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-117
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	1e-112
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-102
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	9e-95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-27
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	9e-25
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	7e-24
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	2e-05
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	5e-05
3atr_A	453	Conserved archaeal protein; saturating double bond	7e-05
3dme_A	369	Conserved exported protein; structural genomics, P	8e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	9e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	2e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	2e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	3e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	3e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	3e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	4e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	4e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	5e-04
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	7e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  388 bits (1000), Expect = e-131
 Identities = 91/360 (25%), Positives = 153/360 (42%), Gaps = 47/360 (13%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR---IFTDLVLISHYYQFTPYN 78
             YD+II G G+ G  VA +L+E P  KVL+IE G  +       +          T  +
Sbjct: 23  KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
             + T P  N      N       GKG+GGST+ING+ +TR      + WE + G  GW+
Sbjct: 83  QNYLTVPLIN------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136

Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           +D++ +Y KK E    P        H+                            +   H
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHS---------------------------FNATCH 169

Query: 198 NTNGLLNVEYSPY---KSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGR 252
            TNG +           S +    + +   LG     D+   +   G S++ + + +N  
Sbjct: 170 GTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHP-RGVSMIMNNLDENQV 228

Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELVKNGHKR-SVFARKE 309
           R+ A++A+L P   R+NL ++    V K++    +   QA GV    N      VFA+ E
Sbjct: 229 RVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHE 288

Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
           V++++G+  SP +L  SG+G +  L +  +  + DL VG N+ +    + ++   +   +
Sbjct: 289 VLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTT-VSSRASSAGA 347

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  386 bits (993), Expect = e-131
 Identities = 100/373 (26%), Positives = 181/373 (48%), Gaps = 49/373 (13%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG--DEDRIFTDL-VLISHYYQFTPYNW 79
           ++D+++VGAG  G VVA RL+E P   VL++EAG  DE+ +  +  +L       + ++W
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSF 138
            + TT Q     G       +P+G+ +GGS+ ++  +  RG   DF+ + ++ G+ GW++
Sbjct: 62  NYTTTAQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117

Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           D++ ++ +K E +  P  N     HNT+G                             H 
Sbjct: 118 DNIQQFVRKNEMVVPPADN-----HNTSGEFIPA-----------------------VHG 149

Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGYT---NIDYNNPNTKIGFSIVQSTIKNGRRMT 255
           TNG +++    + + L D  L +++E       N D    +  +G S   +++ NG+R +
Sbjct: 150 TNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHP-LGISWSIASVGNGQRSS 208

Query: 256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDP-----ISKQAKGVELVKNGHKRSVFARKEV 310
           +S AYL+P   R NL V+ N++V K++         + +       +     +V A+KEV
Sbjct: 209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEV 268

Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINK--T 367
           ++S+G+  +P LL LSG+G    L+ +GI  + +   VG NL +H+      F +N   T
Sbjct: 269 VLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSNQT 327

Query: 368 FSVVTKRLLRQPI 380
           F  + +      +
Sbjct: 328 FDNIFRDSSEFNV 340

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  376 bits (967), Expect = e-127
 Identities = 91/360 (25%), Positives = 156/360 (43%), Gaps = 46/360 (12%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLI-SHYYQF--TPYN 78
              D+II G G+ G   A RL+E P+  VL+IE+G  +     ++   + Y     +  +
Sbjct: 18  RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWS 137
             ++T           N   L   G G+GGST++NG  +TR      + WE++ GN GW+
Sbjct: 78  HAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132

Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           +D+V  Y  + ER   P        H                             +   H
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHY---------------------------FNASCH 165

Query: 198 NTNGLLNVE---YSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTI-KNGR 252
             NG ++          S +    + + ++ G  T  D+   +   G S+  +T+ ++  
Sbjct: 166 GVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDP-HGVSMFPNTLHEDQV 224

Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDP--ISKQAKGVE-LVKNGHKRSVFARKE 309
           R  A++ +L P   R NL V+    V K+++     + +A GVE     G+  +V+A+ E
Sbjct: 225 RSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHE 284

Query: 310 VIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
           V++++G+  SP +L  SG+G +  L  LGI  V DL VG NL +    + +   I    +
Sbjct: 285 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTAT-VRSRITSAGA 343

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  366 bits (942), Expect = e-123
 Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 53/374 (14%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR---IFTDLVLISHYYQFTPYN 78
             +DF+IVG G  G  VA RL+E P+  VL++EAG  +            +   + + Y+
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64

Query: 79  WGFKTTPQKNACLGLPNNQCLWP--QGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW 136
           W +KTT  +         +   P  +GK +GGS+ +N   +  G    F++WE  G   W
Sbjct: 65  WAYKTTMVR----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120

Query: 137 SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVY 196
           ++D ++ Y +K                  +                      L++ +   
Sbjct: 121 TWDPLVPYLRKSA-------------TYHDD-------------------PRLYSPELEK 148

Query: 197 HNTNGLLNVEYSPYKSK---LSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIKNGR 252
               G + + ++    +     +   K+ K +G     +  +     G +    TI  G+
Sbjct: 149 IGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDG-EMDGLTHCCDTIYRGQ 207

Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVI 311
           R   S ++L  + ++ N+ ++      ++II+   +  KGV +V   G++ + FA +EVI
Sbjct: 208 R---SGSFL-FVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVI 263

Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSV 370
           +S G F +PKLLMLSG+GP   L+  GI  + D R VG NLM+H         +   F +
Sbjct: 264 LSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFGM 322

Query: 371 VTKRLLRQPIKTGV 384
               L   P +  V
Sbjct: 323 DDVLLRHGPKRDAV 336

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  349 bits (898), Expect = e-117
 Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQF--TPYNW 79
            E+D+I+VG G  G  VA RLSE P+  V L+EAG +DR   +++ +  + +   + Y+W
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSF 138
            +   PQ+N      N+     + K +GG +  N  I       D +EWE+  G TGW+ 
Sbjct: 72  DYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126

Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           +     +K+ E              N +                          D  +H 
Sbjct: 127 EAAWPLYKRLE-------------TNEDA-----------------------GPDAPHHG 150

Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIK-NGRRMTA 256
            +G +++   P K       L + ++ G              G +  Q   + +G R ++
Sbjct: 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSS 210

Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSS 314
           S +Y+ PI+++ N  ++   R  +++ D   ++  GV++V +  GH   + AR EV++S+
Sbjct: 211 SVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCTGVDIVDSAFGHTHRLTARNEVVLST 269

Query: 315 GAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
           GA ++PKLLMLSG+GP  HL E GI V+ D   VG++L +H 
Sbjct: 270 GAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  338 bits (869), Expect = e-112
 Identities = 94/356 (26%), Positives = 157/356 (44%), Gaps = 62/356 (17%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISH------YYQFT 75
              D +IVG G  G ++A RLSE P  +VLLIEAG+E         I          Q  
Sbjct: 16  PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDP----DI-WNPAAWPALQGR 70

Query: 76  PYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEW-ESLGNT 134
            Y+W ++T  Q     G       W +G+ +GGS+ ++   + RG P+DF  W ++ G+ 
Sbjct: 71  SYDWDYRTEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDR 126

Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
            W +D++L  F+  E              +  G                           
Sbjct: 127 RWGWDELLPVFQAIE-------------DHPLG-------------------------GD 148

Query: 195 VYHNTNGLLNVEY-SPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIKNGR 252
             H   G L +   +   S L+  F+++   LG      +N+     G +     I++GR
Sbjct: 149 GIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMI-GVTPNSLNIRDGR 207

Query: 253 RMTASKAYLKPII-DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVI 311
           R+TA+ A+L   +  R NL ++  SRV ++ ++    Q + +E+V       VFA  +++
Sbjct: 208 RVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFAD-QIV 264

Query: 312 VSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINK 366
           + +GA  SP LLM SG+GP + L   G+  + D+  +G NL +H+  +   +   K
Sbjct: 265 LCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARK 320

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  312 bits (801), Expect = e-102
 Identities = 78/342 (22%), Positives = 130/342 (38%), Gaps = 71/342 (20%)

Query: 20  LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
           L   YD++IVG G  GC +A  LSE   +KVL++E G     + +++    +        
Sbjct: 23  LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQED 80

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFD 139
             KT  ++     +  +     +G+ +GG++IIN  ++ R   + ++         W  D
Sbjct: 81  DGKTPVER----FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMD 132

Query: 140 DVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNT 199
            V + ++  E                  +       ++S     FL+ G+          
Sbjct: 133 LVNQTYEWVE---------------DTIVYKPNSQSWQSVTKTAFLEAGV---------- 167

Query: 200 NGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNP-NTKIGFSIVQSTIKNGRRMTASK 258
                                      +    ++       G  I  ST  N     A+ 
Sbjct: 168 ------------------------HPNH---GFSLDHEE--GTRITGSTFDNKGTRHAAD 198

Query: 259 AYLKPIIDRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVKNG---HKRSVFARKEVIVSS 314
             L    +  NL V  ++ V KII        A GV    +    H+  V ++ EVIVS+
Sbjct: 199 ELLNKG-NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSA 257

Query: 315 GAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHV 355
           G   +P+LL+LSGVGP  +L+ L IPVV     VG  L ++ 
Sbjct: 258 GTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP 299

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  292 bits (750), Expect = 9e-95
 Identities = 75/358 (20%), Positives = 113/358 (31%), Gaps = 80/358 (22%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP----- 76
             YD+IIVGAG GG + A RLSE    KVLL+E G      T    ++ +   +      
Sbjct: 6   TPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD 64

Query: 77  ---YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGN 133
                    T                   G  VGG T +NG ++      DF+      +
Sbjct: 65  IPGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SS 115

Query: 134 TGW--SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFN 191
            GW  S+ +   Y  K                                            
Sbjct: 116 VGWPSSWTNHAPYTSKLS-------------SRLPS------------------------ 138

Query: 192 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNG 251
             T + +T+G   +E S     +    LK       T  D  N      F        NG
Sbjct: 139 --TDHPSTDGQRYLEQSF---NVVSQLLKGQGYNQATINDNPNYKDH-VFGYSAFDFLNG 192

Query: 252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN----GHKRSVFAR 307
           +R      YL+  + R N     N  V  ++ +    Q  GV+             V  +
Sbjct: 193 KRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPK 250

Query: 308 KEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-----------VGDNLMEH 354
             VI+S+GAF + ++L  SG+GP + +  +                    VG N  ++
Sbjct: 251 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDN 308

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score =  112 bits (281), Expect = 2e-27
 Identities = 51/356 (14%), Positives = 100/356 (28%), Gaps = 66/356 (18%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRIFTDLVLISHYYQFTPYNW 79
                +++G G G  V A RL E    + L++E G           +           +W
Sbjct: 4   GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 62

Query: 80  ------------------GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGF 121
                                  P       +  +Q     G+GVGG +++NG +     
Sbjct: 63  FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPK 122

Query: 122 PNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLS 181
            + F E         S +   +YF +   +          + +T      E+  +     
Sbjct: 123 RSYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT------EWYKFARVSR 173

Query: 182 DIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGF 241
           +   K G                         L  +F+ +  + GY   +      K   
Sbjct: 174 EQAGKAG-------------------------LGTVFVPNVYDFGYMQREAAGEVPKSAL 208

Query: 242 SIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNG-- 299
           +       N  + +  K YL   +    + +    +V  I        A  VE       
Sbjct: 209 ATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGK 268

Query: 300 -HKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
                  + + + + +G+  S +LL+ +         + G     +  VG     +
Sbjct: 269 LLATKEISCRYLFLGAGSLGSTELLVRAR--------DTGTLPNLNSEVGAGWGPN 316

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score =  105 bits (262), Expect = 9e-25
 Identities = 50/358 (13%), Positives = 119/358 (33%), Gaps = 41/358 (11%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGF 81
            +YD +IVG+G  GC  A  L     +KV + + G+ D          +  ++      F
Sbjct: 45  IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 103

Query: 82  KTTPQKN-----ACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES---LGN 133
               Q         +       L P         + NG+   +    + +       +G 
Sbjct: 104 VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 163

Query: 134 TGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSD 193
              ++      F + +R  + + ++D            E+    +K    F        +
Sbjct: 164 MSTAWTCATPRFDREQRPLLVKDDADADDA--------EWDRLYTKAESYFQTGTDQFKE 215

Query: 194 TVYHNTNGLLNVEYSPYKSKLSDIFL-KSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGR 252
           ++ HN   +LN     YK +     +  ++     T +++++ NT        +T     
Sbjct: 216 SIRHNL--VLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEE 273

Query: 253 RMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KNGHKRSVFARKEV 310
           R                  +       +++ + ++ + + + +    +G +  + A    
Sbjct: 274 RFN----------------LFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-Y 316

Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTF 368
           ++++GA ++ +LL+ SG G          P +    +G  + E  +       ++   
Sbjct: 317 VLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQ-SLVFCQTVMSTEL 372

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score =  102 bits (254), Expect = 7e-24
 Identities = 61/355 (17%), Positives = 109/355 (30%), Gaps = 65/355 (18%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG-------DEDRIFTDLV-------- 66
           D    +++G+G GG V A RL++       ++E G        + +IF  ++        
Sbjct: 10  DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 68

Query: 67  LISHYYQFTPYNWGFKTTPQKNACLGL----PNNQCLWPQGKGVGGSTIINGNIFTRGFP 122
           L     Q      GF      +  +G+      +     QG+GVGG +++NG +      
Sbjct: 69  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 128

Query: 123 NDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSD 182
           N F E      +  S +   KYF +              + +T      E+  +      
Sbjct: 129 NYFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFEST------EWYKFARTGRK 179

Query: 183 IFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFS 242
              + G   +     N                            Y   +     TK G  
Sbjct: 180 TAQRSGF--TTAFVPNVYD-----------------------FEYMKKEAAGQVTKSGLG 214

Query: 243 IVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV---KNG 299
                  N  + +  K YL        L +    RV K+     S  +  +E +    N 
Sbjct: 215 GEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNV 274

Query: 300 HKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
               V     V  ++G+  + KLL+              +P +   +VG+    +
Sbjct: 275 VATKVVTADRVFFAAGSVGTSKLLVSMKAQG-------HLPNLSS-QVGEGWGNN 321

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          + +   +D  +VG+G  G  +A R++     +VL++E    
Sbjct: 2  QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH 42

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD 57
           +D +++GAG  G   A  L ++ P   +LL+E G 
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
            +D++IVGAG  G V+A RL+     +VL+++    
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH 63

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
            +  +D+++VGAGV G   A+ L       VL+++AG 
Sbjct: 19 SHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
           D +++GAG  G   A RL+++     +++++ + 
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          YD+IIVG+G+ G V A+ L ++ + KVL+IE  + 
Sbjct: 2  YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
              +IVGAG  G V+  +L+E    +V +I+  D 
Sbjct: 3  SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 37

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI 61
           +YD +I+G G  G   A++LS     K+LL+++   +RI
Sbjct: 5  LKYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPWNRI 43

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
           + D I++GAGV G  +A  L+     +VL+ EA + 
Sbjct: 3  TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5  TLAPKREEFLYGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAG 56
           L P+  EFL+ N      YD IIVG G  G   A+ L++      V ++E G
Sbjct: 3  DLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58
             D IIVGAG  G   A+ +++  P  KV +IE+   
Sbjct: 65  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 101

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          E D ++VGAG  G   A+ +S+ P+ +V +IE    
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA----GDEDRIFTDLVLISHYYQFTPY 77
          + YD II+G G+  C+++  LS      +L+++     G E        L + +      
Sbjct: 19 EHYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNPYYGGETASLNLTNLYNTFKPKENI 77

Query: 78 NWGFKTTPQKNACLG 92
             +      N  L 
Sbjct: 78 PSKYGENRHWNVDLI 92

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          + +D I++G G GG  +A  ++     +VLL+E     R
Sbjct: 6  EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAFPR 43

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
             D +++GAG GG    H+L        +  +  D 
Sbjct: 7  HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          +YD II+G+G  G    +  +      VL+ +A  
Sbjct: 2  KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHM 35

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE 58
           E D +IVGAG  G   A+ LS + P  ++ ++EAG  
Sbjct: 79  ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA 115

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          ++ D +++GAG  G V A  +++   +KV ++E     R
Sbjct: 4  EKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKFPR 41

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          +E D ++VGAG  G    +RL E     V +IE   +
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          + YD ++VG G  G   A +++E    +VL++E   
Sbjct: 3  ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
           Y+ +++G G+ G  +A+ L++  +    L E+G 
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT 50

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
             D +++GAGV G   A  +++    KVL IEAG++
Sbjct: 8  PALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
            YD ++VGAG+ G    HR        V   EA   
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
              +IVGAG  G   A  L+      V +++   
Sbjct: 6  SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.91
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.66
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.49
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.47
3dme_A	369	Conserved exported protein; structural genomics, P	99.45
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.39
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.39
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.36
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.35
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.35
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.33
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.33
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.31
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.29
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.29
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.29
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.25
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.24
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.22
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.22
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.22
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.22
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.22
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.19
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.18
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.18
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.16
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.14
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.11
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.1
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.09
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.03
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.96
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.95
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.95
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.94
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.94
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.88
3atr_A	453	Conserved archaeal protein; saturating double bond	98.87
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.85
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.84
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.77
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.77
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.73
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.73
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.73
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.71
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.7
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.69
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.69
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.69
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.69
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.67
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.66
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.64
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.63
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.62
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.61
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.6
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.56
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.53
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.53
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.51
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.47
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.41
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.38
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.36
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.34
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.34
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.34
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.26
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.25
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.21
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.21
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.2
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.16
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.13
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.08
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.02
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.01
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.01
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.01
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.01
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.01
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.99
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.99
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.98
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.98
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.97
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.97
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.97
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.97
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.95
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.95
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.94
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.94
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.94
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.93
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.92
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.91
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.9
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.89
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.88
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.88
4dna_A	463	Probable glutathione reductase; structural genomic	97.87
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.86
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.86
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.85
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.84
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.84
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.84
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.83
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.83
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.82
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.82
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.81
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.81
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.8
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.8
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.8
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.8
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.8
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.79
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.78
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.77
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.77
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.77
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.74
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.73
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.73
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.73
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.73
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.72
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.72
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.72
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.71
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.71
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.71
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.7
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.7
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.68
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.67
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.67
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.67
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.66
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.65
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.63
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.63
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.62
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.61
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.6
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.58
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.58
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.56
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.55
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.54
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.54
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.5
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.49
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.47
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.44
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.39
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.38
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.37
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.35
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.34
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.33
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.32
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.31
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.31
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.31
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.3
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.3
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.3
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.3
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.29
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.27
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.25
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.24
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.24
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.23
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.23
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.22
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.21
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.18
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.16
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.16
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.15
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.13
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.12
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.1
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.08
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.07
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.03
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.01
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.97
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.94
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.91
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.88
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.87
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.87
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.83
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.81
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.8
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.78
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.75
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.72
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.71
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.7
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.7
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.66
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.64
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.64
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.6
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.45
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.43
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.43
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.4
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.39
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.32
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.22
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.13
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.13
4dna_A	463	Probable glutathione reductase; structural genomic	96.06
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.78
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.63
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.25
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.12
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	94.73
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.66
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.58
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.58
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.52
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.28
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.05
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.81
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.8
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	93.78
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	93.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.61
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.14
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	92.49
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	92.32
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.3
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.22
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.19
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	91.88
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	91.78
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.75
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	91.73
1ojt_A	482	Surface protein; redox-active center, glycolysis,	91.7
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	91.67
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.6
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	91.59
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.24
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.21
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	91.17
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	91.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.0
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	90.87
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	90.77
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.64
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	90.44
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	90.36
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	90.35
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.29
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	90.24
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.02
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.99
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	89.98
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.98
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.91
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	89.84
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	89.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.66
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.63
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	89.59
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	89.56
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.41
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.2
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.95
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	88.78
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	88.7
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.57
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.35
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.33
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.18
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.16
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	87.99
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	87.96
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	87.76
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	87.73
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	87.73
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	87.58
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	87.48
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	87.44
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.44
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	87.37
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.23
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.2
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.75
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	86.72
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	86.7
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	86.53
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.5
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	86.48
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	86.47
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	86.45
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	86.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	86.4
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.37
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.22
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	86.05
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.8
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	85.78
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	85.71
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	85.66
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	85.58
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	85.57
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	85.53
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	85.51
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	85.4
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	85.33
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	85.24
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.23
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	85.16
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.1
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.02
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.0
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	85.0
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	84.98
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	84.95
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	84.92
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.88
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	84.83
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	84.74
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	84.69
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	84.69
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.5
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.48
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	84.45
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	84.42
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	84.41
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.39
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	84.32
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	84.31
4ezb_A	317	Uncharacterized conserved protein; structural geno	84.3
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.17
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	84.13
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	84.04
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	83.89
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	83.88
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	83.87
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	83.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.85
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	83.81
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	83.77
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	83.67
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	83.64
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	83.57
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	83.53
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.48
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	83.31
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	83.22
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.18
3tl2_A	315	Malate dehydrogenase; center for structural genomi	83.14
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	83.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	83.05
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	83.04
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.04
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	82.95
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	82.93
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	82.72
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.65
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	82.58
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.58
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	82.41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	82.4
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.4
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	82.36
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	82.31
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	82.3
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	82.29
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	82.06
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	82.01
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	81.83
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	81.82
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	81.8
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	81.79
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	81.77
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	81.44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	81.41
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	81.4
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	81.29
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	81.26
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	81.06
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	81.06
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	80.96
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	80.9
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	80.88
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	80.88
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	80.86
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	80.78
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	80.74
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	80.74
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	80.72
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	80.68
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	80.57
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	80.45
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	80.32
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	80.22
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	80.12
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	80.08
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	80.04

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=6.6e-55  Score=443.50  Aligned_cols=314  Identities=30%  Similarity=0.541  Sum_probs=271.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC--Cccccchhhhcccc-CCCCccccccccCCccccCCCCCeee
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED--RIFTDLVLISHYYQ-FTPYNWGFKTTPQKNACLGLPNNQCL   99 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~--~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
                      +|||||||+|.+||++|.+|++.++.+|||||+|+..  ......|....... ++.++|.|.+.||+.    ++++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~----~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG----YNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGG----GTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCC----CCCceEe
Confidence            6999999999999999999999659999999999876  34445565544443 478999999999876    6788999


Q ss_pred             ecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417        100 WPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS  178 (385)
Q Consensus       100 ~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
                      |++|++|||+|.+|+|++.|+.+.||+.|++. |+.+|+|++|+|||+++|++..+...         -..+..+     
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~---------~~~~~~~-----  143 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADN---------HNTSGEF-----  143 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTC---------CCCTTTS-----
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCcccc---------ccccccC-----
Confidence            99999999999999999999999999999998 89999999999999999998754210         0000011     


Q ss_pred             cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHc--CCCC-CCCCCCCCCceeeeeeccccCCcccc
Q psy10417        179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKEL--GYTN-IDYNNPNTKIGFSIVQSTIKNGRRMT  255 (385)
Q Consensus       179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~  255 (385)
                                    +..+|+..||+.+....+..+....+.++++++  |++. .++++.. ..|++.+...+..+.|.+
T Consensus       144 --------------~~~~hG~~Gp~~v~~~~~~~~~~~~~~~a~~~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~s  208 (566)
T 3fim_B          144 --------------IPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGH-PLGISWSIASVGNGQRSS  208 (566)
T ss_dssp             --------------CGGGSCBSSSEEEBSCSSCCTHHHHHHHHHHHTHHHHCBCSCGGGSC-CCEEEECCBSEETTEECC
T ss_pred             --------------CccccCCCCCeeeecCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCC-cceEEeeeeecCCCEEcC
Confidence                          456788899999998888889999999999999  9887 5777766 789999998888999999


Q ss_pred             hhHHhhhhhccCCCeEEEeCcEEEEEEEc---CCCCeEEEEEEEeC-C-eEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        256 ASKAYLKPIIDRTNLHVIKNSRVVKIIID---PISKQAKGVELVKN-G-HKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       256 ~~~~~l~~~~~~~g~~i~~~~~V~~i~~~---~~~~~v~GV~~~~~-g-~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      +..+||.++.+++|++|++++.|++|+++   ++.++|+||++.+. | +.++++|+|+||||||+|+||+||++|||||
T Consensus       209 a~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp  288 (566)
T 3fim_B          209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGD  288 (566)
T ss_dssp             HHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEEC
T ss_pred             HHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCC
Confidence            99999998888999999999999999997   22268999999974 5 7789999889999999999999999999999


Q ss_pred             hhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCccc
Q psy10417        331 REHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSV  370 (385)
Q Consensus       331 ~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~~  370 (385)
                      .++|+++||+++.|+| ||+||+||+.+ .+.|.++.+...
T Consensus       289 ~~~L~~~gI~vv~dlPgVG~NLqDH~~~-~~~~~~~~~~~~  328 (566)
T 3fim_B          289 ENDLSSVGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQTF  328 (566)
T ss_dssp             HHHHHHTTCCCSEECTTTTCSBBCCEEE-CCEEEESCSCSS
T ss_pred             hHHHhhcCCCceecCcchhhhhhcCccc-eEEEEeCCCccc
Confidence            9999999999999999 99999999996 788888776544

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=8.2e-54  Score=436.13  Aligned_cols=313  Identities=28%  Similarity=0.465  Sum_probs=264.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC---CccccchhhhccccCCCCccccccccCCccccCCCCCe
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED---RIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQ   97 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
                      .++|||||||||.|||++|.+|++.++.+|||||+|+..   .+....|..+....++.++|.|.+.|+.     ..++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r~   91 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQT   91 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCCe
Confidence            458999999999999999999999779999999999843   2233344444444567899999998875     36778


Q ss_pred             eeecCcceecccccccCcEEecCChhhHHHHHhcCCC-CCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCc
Q psy10417         98 CLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNT-GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY  176 (385)
Q Consensus        98 ~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~-~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
                      +.|++|++|||+|.+|+|++.|+++.||+.|++++.. +|+|++++|||+++|.+..+...                   
T Consensus        92 ~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~-------------------  152 (583)
T 3qvp_A           92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAK-------------------  152 (583)
T ss_dssp             CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHH-------------------
T ss_pred             eeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcch-------------------
Confidence            8999999999999999999999999999999999866 99999999999999998654210                   


Q ss_pred             cccchhhhhhccccCCCCcccCCCcceEeeeC---CCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeecccc-CC
Q psy10417        177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYS---PYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIK-NG  251 (385)
Q Consensus       177 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~-~g  251 (385)
                             ....|.. .+..+|+..||+.+...   ....+....++++++++|++. .++++.. ..|++.++..+. .+
T Consensus       153 -------~~~~~~~-~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~-~~G~~~~~~t~~~~g  223 (583)
T 3qvp_A          153 -------QIAAGHY-FNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQ  223 (583)
T ss_dssp             -------HHHHTCC-CCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTC
T ss_pred             -------hhccccc-CCccccCCCCCEEecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCC-CceecccceeEcCCC
Confidence                   0001110 14567888999998776   334678889999999999987 5788777 888888877764 68


Q ss_pred             cccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       252 ~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .|.++..+||.++.+++|++|++++.|++|++++.  +++|+||++. .+|+.++++|+|+||||||+|+||+||++|||
T Consensus       224 ~R~saa~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          224 VRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             BBCCHHHHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             cEecHHHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            89999999999888899999999999999999842  5799999998 57888899998899999999999999999999


Q ss_pred             CChhhhhhcCCCccccccchhhhhhccCCCceEEEEcCC
Q psy10417        329 GPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       329 g~~~~l~~~gi~~~~~~pvG~~l~dh~~~~~~~~~~~~~  367 (385)
                      ||.++|+++||+++.|+|||+||+||+.+ .+.|.++++
T Consensus       304 Gp~~~L~~~GI~vv~dLPVG~NLqDH~~~-~~~~~~~~~  341 (583)
T 3qvp_A          304 GMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSA  341 (583)
T ss_dssp             SCHHHHGGGTCCCSBCCCTTCCBBCCEEE-EEEEEECGG
T ss_pred             CCHHHHHhCCCCceeeCccccchhhCccc-eEEEEecCC
Confidence            99999999999999999999999999996 888988753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=1.6e-50  Score=412.14  Aligned_cols=306  Identities=28%  Similarity=0.498  Sum_probs=254.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC---CccccchhhhccccCCCCccccccccCCccccCCCCCe
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED---RIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQ   97 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
                      .++|||||||||.|||++|.+|++++..+|||||+|+..   .+....|.......++.++|.|.+..        .++.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~--------~~r~   75 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM--------VRRD   75 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEE--------EEET
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEE--------CCcc
Confidence            357999999999999999999999844799999999873   23445666666667778999987752        2223


Q ss_pred             ee------ecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCcccc
Q psy10417         98 CL------WPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNV  171 (385)
Q Consensus        98 ~~------~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  171 (385)
                      +.      |++|+++||+|.+|+|++.|..+.||+.|++.++.+|+|+++.|||++.|.+......              
T Consensus        76 ~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~--------------  141 (577)
T 3q9t_A           76 DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRL--------------  141 (577)
T ss_dssp             TEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCC--------------
T ss_pred             ccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccc--------------
Confidence            33      8999999999999999999999999999999899999999999999999988653210              


Q ss_pred             ccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCc---hHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeecc
Q psy10417        172 EYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKS---KLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQST  247 (385)
Q Consensus       172 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~  247 (385)
                          |              ..+..+|+..||+.+....+..   ++...+.++++++|++. .++++.. ..|++.+...
T Consensus       142 ----~--------------~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~  202 (577)
T 3q9t_A          142 ----Y--------------SPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGE-MDGLTHCCDT  202 (577)
T ss_dssp             ----S--------------CGGGGGGCCSCSEEEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSC-CCEEEECEES
T ss_pred             ----c--------------CCccccCCCCCCEEeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCCCCC-cCeEEeecce
Confidence                0              0023467888999988876543   36777888889999987 5677766 7898888888


Q ss_pred             ccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        248 IKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN-GHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       248 ~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~-g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      +..+.|.++. .+   +.+++|++|++++.|++|++++.+++++||++.+. |+.++++|+|+||||||+|+||+||++|
T Consensus       203 ~~~g~R~s~~-~~---l~~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~S  278 (577)
T 3q9t_A          203 IYRGQRSGSF-LF---VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLS  278 (577)
T ss_dssp             EETTEECCGG-GG---SSSCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             ecCCeEeeHH-HH---HhcCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHc
Confidence            8888888754 33   34678999999999999999865679999999975 8888999988999999999999999999


Q ss_pred             CCCChhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCCccchh
Q psy10417        327 GVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVT  372 (385)
Q Consensus       327 gig~~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~~~~~  372 (385)
                      ||||.++|+++||+++.|+| ||+||+||+.+ .+.|++++++.+.+
T Consensus       279 GIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~-~~~~~~~~~~~~~~  324 (577)
T 3q9t_A          279 GIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGFGMDD  324 (577)
T ss_dssp             TEECHHHHHTTTCCCSEECTTTTEEEBCCEEE-EEEEEECTTSSSHH
T ss_pred             CCCCHHHHHHcCCCeeccCchhhhhhhcCcce-eEEEEeCCCCccch
Confidence            99999999999999999999 99999999996 89999988776543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=2.7e-49  Score=405.40  Aligned_cols=313  Identities=29%  Similarity=0.431  Sum_probs=260.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC--cccc-chhhhccccCCCCccccccccCCccccCCCCCe
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR--IFTD-LVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQ   97 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
                      ..+|||||||+|.+|+++|.+|++++|.+|+|||+|....  .... .|.......++.++|.+.+.|      ...++.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~~~~   95 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRT   95 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTTSCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCCCce
Confidence            3579999999999999999999993399999999998663  2223 554444444556788887766      256778


Q ss_pred             eeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCc
Q psy10417         98 CLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY  176 (385)
Q Consensus        98 ~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
                      +.+++|++|||+|.+|+|++.|+.+.||+.|++. |..+|+|++|+|||+++|+++++....                  
T Consensus        96 ~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~------------------  157 (587)
T 1gpe_A           96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQ------------------  157 (587)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHH------------------
T ss_pred             eeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccc------------------
Confidence            8999999999999999999999999999999988 899999999999999999988752110                  


Q ss_pred             cccchhhhhhccccCCCCcccCCCcceEeeeC---CCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccc-cCC
Q psy10417        177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYS---PYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTI-KNG  251 (385)
Q Consensus       177 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~-~~g  251 (385)
                              ...|.. .+..+++..||+.+..+   ....+..+.|.++++++|++. .++++.. +.|++.|...+ ..+
T Consensus       158 --------~~~G~~-~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~~g  227 (587)
T 1gpe_A          158 --------LAAGHS-FNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQ  227 (587)
T ss_dssp             --------HHHTCC-CCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTC
T ss_pred             --------cccccc-cCccccCCCCCEEEccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCC-CCEEEecceEECCCC
Confidence                    001111 13456778889888744   355788899999999999987 4777776 78998887765 468


Q ss_pred             cccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       252 ~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .|+++..+|+.+++++.|++|++++.|++|++++++  ++++||++. .+|+.++++|+|+||||||+|+||+||++|||
T Consensus       228 ~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          228 VRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             CBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             cccCHHHHHHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            999999999987778899999999999999997422  589999998 67888899997799999999999999999999


Q ss_pred             CChhhhhhcCCCccccccchhhhhhccCCCceEEEEcCCc
Q psy10417        329 GPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFGINKTF  368 (385)
Q Consensus       329 g~~~~l~~~gi~~~~~~pvG~~l~dh~~~~~~~~~~~~~~  368 (385)
                      ||.++|+++||+++.|+|||+||+||+.+ .+.|.+++++
T Consensus       308 Gp~~~L~~~gI~vv~dlPVG~nL~DH~~~-~~~~~~~~~~  346 (587)
T 1gpe_A          308 GLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSAG  346 (587)
T ss_dssp             ECHHHHHHTTCCCSEECCTTCSBBCCEEE-EEEEEECGGG
T ss_pred             CCHHHHHhCCCCeEEeCCCCcchhcCccc-ceEEEeCCCc
Confidence            99999999999999999999999999996 7888887654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=2.4e-48  Score=394.32  Aligned_cols=303  Identities=30%  Similarity=0.540  Sum_probs=251.3

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC-ccccchhhhccccCCCCccccccccCCccccCCCCCee
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR-IFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQC   98 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (385)
                      ..++|||||||||++|+++|.+||+++|++|||||+|+... +....|.....+.++.++|.|.+.|+..    ..++.+
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~~~   89 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGRAH   89 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTBCC
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCCeE
Confidence            34589999999999999999999996589999999998653 3345566666667788999999988876    677889


Q ss_pred             eecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCcc
Q psy10417         99 LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYK  177 (385)
Q Consensus        99 ~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (385)
                      .|++|++|||+|.+|++++.|+.+.||+.|.+. ++.+|+|++++|||+++|+....                       
T Consensus        90 ~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~-----------------------  146 (526)
T 3t37_A           90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG-----------------------  146 (526)
T ss_dssp             EECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT-----------------------
T ss_pred             eccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC-----------------------
Confidence            999999999999999999999999999999875 68899999999999999987653                       


Q ss_pred             ccchhhhhhccccCCCCcccCCCcceEeeeCC-CCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccc
Q psy10417        178 SKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSP-YKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMT  255 (385)
Q Consensus       178 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~  255 (385)
                                     ....++..|+.+..... ...++.+.+.++++.+|++. .+.+... +.+++.|...+..+.+.+
T Consensus       147 ---------------~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~g~r~s  210 (526)
T 3t37_A          147 ---------------GDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGE-MIGVTPNSLNIRDGRRVT  210 (526)
T ss_dssp             ---------------TSSSSCSSCSEECBCCSTTSCHHHHHHHHHHHHTTCCBCSSSCSSC-CBSBCCCCBCEETTEECC
T ss_pred             ---------------CccccCcCCCcCcccccccCCHHHHHHHHHHHHcCCCcccCCCCCc-ccccccccccccCCcccc
Confidence                           22334455666554433 34678888999999999987 3455544 677777777788888999


Q ss_pred             hhHHhhhhh-ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhh
Q psy10417        256 ASKAYLKPI-IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHL  334 (385)
Q Consensus       256 ~~~~~l~~~-~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l  334 (385)
                      ...+++.+. ..++|++|++++.|++|+++  +++++||++...+....+.| |+||||||+|+||+||++||||+...+
T Consensus       211 ~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~--~~~a~gv~~~~~~~~~~~~a-~~VILsAGai~SP~LLl~SGig~~~~l  287 (526)
T 3t37_A          211 AADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVL  287 (526)
T ss_dssp             HHHHHSCHHHHTCTTEEEECSCEEEEEEEE--TTEEEEEEEEETTEEEEEEE-EEEEECSHHHHHHHHHHHTTEECHHHH
T ss_pred             cccccccccccCCCCeEEEeCCEEEEEEec--CCeEEEEEEEecCceEEEee-cceEEcccccCCcchhhhccCCchhhh
Confidence            888888654 46889999999999999999  78999999998888888999 699999999999999999999999999


Q ss_pred             hhcCCCcccccc-chhhhhhccCCCceEEEEcCCc
Q psy10417        335 TELGIPVVQDLR-VGDNLMEHVAYSALTFGINKTF  368 (385)
Q Consensus       335 ~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~~  368 (385)
                      .+.||+++.++| ||+||+||+......+...+++
T Consensus       288 ~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~  322 (526)
T 3t37_A          288 DAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV  322 (526)
T ss_dssp             HHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCC
T ss_pred             hccCCCeEecCCccccccccccccceeEEeccCCc
Confidence            999999999999 9999999997533444444443

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1.5e-47  Score=389.69  Aligned_cols=302  Identities=31%  Similarity=0.542  Sum_probs=258.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc--cccchhhhccccCCCCccccccccCCccccCCCCCeee
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI--FTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCL   99 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
                      .+|||||||+|.+|+++|.+|++++|.+|+|||+|.....  ....|.......++..+|.+.+.|++.     .++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceEE
Confidence            5799999999999999999999976899999999986642  234444333333556788888777653     456788


Q ss_pred             ecCcceecccccccCcEEecCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417        100 WPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS  178 (385)
Q Consensus       100 ~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~-~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
                      +++|++|||+|.+|++++.|+.+.||+.|.+ +|..+|+|++|+|||+++|+++...                       
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~-----------------------  143 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-----------------------  143 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCB-----------------------
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCC-----------------------
Confidence            9999999999999999999999999999998 6888999999999999999986521                       


Q ss_pred             cchhhhhhccccCCC-CcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCCCC-CCceeeeeecccc-CCcccc
Q psy10417        179 KLSDIFLKVGLFNSD-TVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPN-TKIGFSIVQSTIK-NGRRMT  255 (385)
Q Consensus       179 ~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~g~~~~~~~~~-~g~r~~  255 (385)
                                    + ..+++..|++++..+.+..+..+.+.++++++|++..++++.. .+.|++.|...|. .+.|++
T Consensus       144 --------------~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~d~n~~~~~~~g~~~~~~~~~~~g~R~s  209 (546)
T 2jbv_A          144 --------------PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSS  209 (546)
T ss_dssp             --------------TTBTTSCBSCSEEEEECCSCCHHHHHHHHHHHHTTCCBCCSSSSSCCSSEEEECEECBCTTSBBCC
T ss_pred             --------------CccccCCCCCCEEEecCCCCCHHHHHHHHHHHHCCCCccCCCCCCcCcceEEeeeeecCCCCeEcC
Confidence                          2 3467778899988777778899999999999999876555432 1678999998888 899999


Q ss_pred             hhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhh
Q psy10417        256 ASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREH  333 (385)
Q Consensus       256 ~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~--g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~  333 (385)
                      +..+|+.++.++.|++|++++.|++|++++ +++++||++.+.  |+.++++|+|+||||||+++||+||++|||||.+.
T Consensus       210 ~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~-~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~  288 (546)
T 2jbv_A          210 SSVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAH  288 (546)
T ss_dssp             HHHHHTGGGTTCTTEEEECSCEEEEEEECT-TSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHH
T ss_pred             HHHHHHHHHhcCCCcEEEeCCEEEEEEECC-CCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCCCchHH
Confidence            999999887778899999999999999983 289999999876  77888999669999999999999999999999999


Q ss_pred             hhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417        334 LTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       334 l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~  367 (385)
                      |+++||+++.++| ||+||+||+.+ .+.|.++++
T Consensus       289 L~~~gi~~~~dlP~VG~nL~dH~~~-~~~~~~~~~  322 (546)
T 2jbv_A          289 LAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQP  322 (546)
T ss_dssp             HHHTTCCCSEECTTTTCSBBCCEEC-CEEEEESSC
T ss_pred             HHhcCCceEeeCcchhhhhhhCccc-eEEEEecCC
Confidence            9999999999999 99999999996 788888765

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=2.6e-39  Score=328.36  Aligned_cols=277  Identities=28%  Similarity=0.377  Sum_probs=203.6

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC--ccccchh-hhccccCCCCccccccccCCccccCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR--IFTDLVL-ISHYYQFTPYNWGFKTTPQKNACLGLPNN   96 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~--~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (385)
                      +..+|||||||||.+|+++|.+|++  |.+|+|||+|+...  +....+. +...+...  .| +.+.+|..    ..++
T Consensus        23 ~~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~--~~-~~t~~q~~----~~~~   93 (536)
T 1ju2_A           23 LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQE--DD-GKTPVERF----VSED   93 (536)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHSC--CC-SSSSEEEE----ECTT
T ss_pred             ccCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhccCC--Cc-CcCCCccc----cCCC
Confidence            4467999999999999999999999  89999999998642  2222221 11111111  23 33344432    3455


Q ss_pred             eeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCc
Q psy10417         97 QCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY  176 (385)
Q Consensus        97 ~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
                      .+.+++|++|||+|.+|++++.|+.+.||+.+    +.+|.|+++.|||+++|+.+...                     
T Consensus        94 ~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~----G~~W~~~~~~p~~~~~e~~~~~~---------------------  148 (536)
T 1ju2_A           94 GIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIVYK---------------------  148 (536)
T ss_dssp             SCEEEEECBTTGGGGTSCCEECBCCTTSSTTS----SSCCCHHHHHHHHHHHHHHHCBC---------------------
T ss_pred             cceeecceeccccccccCeEEEeCCHHHHhhc----cCCCChHHHHHHHHhhhcccCCC---------------------
Confidence            67788999999999999999999999999642    23599999999999999865420                     


Q ss_pred             cccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCC-CCCCCCCCceee--eeeccccCCcc
Q psy10417        177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNI-DYNNPNTKIGFS--IVQSTIKNGRR  253 (385)
Q Consensus       177 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~g~~--~~~~~~~~g~r  253 (385)
                                                      +...+....+.++++++|++.. ..+... ..|..  .+. .+..|.|
T Consensus       149 --------------------------------~~~~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~g~~~-~~~~g~r  194 (536)
T 1ju2_A          149 --------------------------------PNSQSWQSVTKTAFLEAGVHPNHGFSLDH-EEGTRITGST-FDNKGTR  194 (536)
T ss_dssp             --------------------------------CCCCHHHHHHHHHHHHTTCCCEEEECCBC-CSEEEECEES-BCTTSBB
T ss_pred             --------------------------------CCCCcHHHHHHHHHHHcCCCCCCCcccCC-CCCceeeeEE-ECCCCeE
Confidence                                            0113455677888888888531 111011 11211  111 1246778


Q ss_pred             cchhHHhhhhhccCCCeEEEeCcEEEEEEEcCC-CCeEEEEEEEe-CCeEEEEE--eCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPI-SKQAKGVELVK-NGHKRSVF--ARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~-~g~~~~i~--a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +++.. ++. .+++.|++|++++.|++|+++++ +++++||++.+ +|+.++++  +.|+||||||+++||+||++||||
T Consensus       195 ~s~~~-~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig  272 (536)
T 1ju2_A          195 HAADE-LLN-KGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVG  272 (536)
T ss_dssp             CCGGG-GGG-GSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred             ecHHH-hhh-hhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCC
Confidence            77765 665 45788999999999999999842 25899999986 56665664  557999999999999999999999


Q ss_pred             ChhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417        330 PREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       330 ~~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~  367 (385)
                      +.+.|+++||+++.++| ||+||+||+.+ .+.+.++++
T Consensus       273 ~~~~l~~~gi~~~~dlP~VG~NL~DH~~~-~~~~~~~~~  310 (536)
T 1ju2_A          273 PESYLSSLNIPVVLSHPYVGQFLHDNPRN-FINILPPNP  310 (536)
T ss_dssp             CHHHHHHTTCCCSEECTTTTEEEECCEEE-EEEECCSSC
T ss_pred             CHHHHHhcCCceEecCcccccchhcCcce-eEEEEeCCC
Confidence            99999999999999999 99999999985 677766644

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=1.5e-37  Score=313.47  Aligned_cols=280  Identities=19%  Similarity=0.236  Sum_probs=209.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc-cc--cchhhhccccCCCCccccccccCC-----------
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI-FT--DLVLISHYYQFTPYNWGFKTTPQK-----------   87 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~-~~--~~p~~~~~~~~~~~~~~~~~~~~~-----------   87 (385)
                      .+||+||||+|++|+++|.+|++. |.+|+|||+|..... ..  ..+... .......+|.+.+.|+.           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            579999999999999999999997 999999999985431 11  111111 11223467877766651           


Q ss_pred             ---ccccC----CCCCeeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHH-HHHHHHhhccCCCCCcc
Q psy10417         88 ---NACLG----LPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL-KYFKKFERINIPELNSD  159 (385)
Q Consensus        88 ---~~~~~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~-~~~~~~e~~~~~~~~~~  159 (385)
                         .....    ..++.+.|++|++|||+|.+|++++.|+.+.||+.|.    ..|.|++|+ |||+++|+++++...  
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~--  155 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHI--  155 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCC--
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCC--
Confidence               01111    1456788999999999999999999999999999995    578999999 999999998775311  


Q ss_pred             cccccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCC-----C-CCCC
Q psy10417        160 TVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYT-----N-IDYN  233 (385)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~-----~-~~~~  233 (385)
                                                       ...++ ..++        ..+..+.+.++++++|++     . .+++
T Consensus       156 ---------------------------------~~~~~-~~~~--------~~p~~~~~~~a~~~~G~~~~~~p~~~d~n  193 (504)
T 1n4w_A          156 ---------------------------------DTKWF-EDTE--------WYKFARVSREQAGKAGLGTVFVPNVYDFG  193 (504)
T ss_dssp             ---------------------------------CHHHH-HHCG--------GGHHHHHHHHHHHHTTCCEEECCBSBCHH
T ss_pred             ---------------------------------Ccccc-cCCC--------cchHHHHHHHHHHHcCCCCccCCcccccC
Confidence                                             00010 0000        135677888899999983     2 2222


Q ss_pred             -------C-CCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CC---eE
Q psy10417        234 -------N-PNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NG---HK  301 (385)
Q Consensus       234 -------~-~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g---~~  301 (385)
                             + ...|..++.|...|..+ |+++..+|+.++.++.|++|++++.|++|++++++++++||++.+ +|   +.
T Consensus       194 ~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~  272 (504)
T 1n4w_A          194 YMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLAT  272 (504)
T ss_dssp             HHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccee
Confidence                   1 11266777788888999 999999999887777789999999999999985345899999985 55   56


Q ss_pred             EEEEeCcEEEEcCCCcccHHHHHHcC-CCChhhhhhcCCCccccccchhhhhhccCCCceEEE
Q psy10417        302 RSVFARKEVIVSSGAFNSPKLLMLSG-VGPREHLTELGIPVVQDLRVGDNLMEHVAYSALTFG  363 (385)
Q Consensus       302 ~~i~a~k~VVlAaGa~~tp~LL~~Sg-ig~~~~l~~~gi~~~~~~pvG~~l~dh~~~~~~~~~  363 (385)
                      ++++|+ +||||||+|+||+||++|| +|        ||+++.+ .||+||+||+.+ .+.+.
T Consensus       273 ~~v~A~-~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~~~-~VG~nl~dh~~~-~~~~~  324 (504)
T 1n4w_A          273 KEISCR-YLFLGAGSLGSTELLVRARDTG--------TLPNLNS-EVGAGWGPNGNI-MTARA  324 (504)
T ss_dssp             EEEEEE-EEEECSHHHHHHHHHHHHHHTT--------SSTTCCT-TTTCCBBCTTCE-EEEEE
T ss_pred             EEEeeC-EEEEccCCCCCHHHHHhccccC--------CCCCCCh-hhccccccCCcc-eeeec
Confidence            789995 9999999999999999999 87        5665533 299999999985 44443

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=1.8e-36  Score=308.65  Aligned_cols=283  Identities=27%  Similarity=0.387  Sum_probs=204.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccc--cc-hhhhccccCCCCccc-----cccccCCccccC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFT--DL-VLISHYYQFTPYNWG-----FKTTPQKNACLG   92 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~--~~-p~~~~~~~~~~~~~~-----~~~~~~~~~~~~   92 (385)
                      ..+|||||||||++|+++|.+|+++ |.+|+|||+|+......  .. +..........+++.     ....+...    
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----   79 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----   79 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCcc----
Confidence            3579999999999999999999998 99999999998543210  00 000000000000000     00000000    


Q ss_pred             CCCCeeeecCcceecccccccCcEEecCChhhHHH---HHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCcc
Q psy10417         93 LPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNE---WESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLL  169 (385)
Q Consensus        93 ~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~---~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~  169 (385)
                      .......+.+|+++||+|.+|++++.|+.+.||+.   |.    .+|+|++  +||+++|......              
T Consensus        80 ~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~----~~w~~~~--p~~~k~e~~~~~~--------------  139 (546)
T 1kdg_A           80 WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP----SSWTNHA--PYTSKLSSRLPST--------------  139 (546)
T ss_dssp             TBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC----GGGSCCH--HHHHHHHHHSCCB--------------
T ss_pred             ccccccccccceeecccccccceEEecCChHHhcCcccCc----cccCccc--HHHHHHHhcCCCC--------------
Confidence            00112456789999999999999999999999987   83    4677777  9999999865421              


Q ss_pred             ccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCCCCC---CCCCceeeeeec
Q psy10417        170 NVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNN---PNTKIGFSIVQS  246 (385)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~~g~~~~~~  246 (385)
                                               ..+...++      .+..+....+.++++++|++..+.+.   .. +.|++.+..
T Consensus       140 -------------------------~~~~~~g~------~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~-~~g~~~~~~  187 (546)
T 1kdg_A          140 -------------------------DHPSTDGQ------RYLEQSFNVVSQLLKGQGYNQATINDNPNYK-DHVFGYSAF  187 (546)
T ss_dssp             -------------------------SCCSTTSC------CCSCHHHHHHHHHHHTTTCEECCGGGSTTCC-TTEEEECCB
T ss_pred             -------------------------ccCCCCCC------ccCCHHHHHHHHHHHHCCCCcCCccCCcCCC-CcEEeeeee
Confidence                                     01111121      12345667788888899986543221   12 567788887


Q ss_pred             cccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCe--EEEEEeCcEEEEcCCCcccHHH
Q psy10417        247 TIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGH--KRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       247 ~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~--~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      .+..+.|.++..+|+.++.++.|++|++++.|++|+++  +++++||++.+  +|+  ..++.+.|+||||||+++||+|
T Consensus       188 ~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~--~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~l  265 (546)
T 1kdg_A          188 DFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRI  265 (546)
T ss_dssp             CEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHH
T ss_pred             ccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHH
Confidence            88889999988889988777789999999999999998  67999999986  354  3345444799999999999999


Q ss_pred             HHHcCCCChhhhhhc------CCCcc-----ccccchhhhhhccCCCceEEE
Q psy10417        323 LMLSGVGPREHLTEL------GIPVV-----QDLRVGDNLMEHVAYSALTFG  363 (385)
Q Consensus       323 L~~Sgig~~~~l~~~------gi~~~-----~~~pvG~~l~dh~~~~~~~~~  363 (385)
                      |++|||||.++|+++      ||+++     .|+|||+||+||+.+ .+.|.
T Consensus       266 L~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlpVG~nL~DH~~~-~~~~~  316 (546)
T 1kdg_A          266 LFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVFT  316 (546)
T ss_dssp             HHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTBBCCCCE-EEEEE
T ss_pred             HHHcCCCcHHHHHHhhccccCCcccccccccccCCcccCcccCcce-eEEEe
Confidence            999999999999999      58874     788899999999996 67776

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=2.2e-36  Score=305.01  Aligned_cols=275  Identities=21%  Similarity=0.241  Sum_probs=206.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchh---hhccc-cCCCCccccccccCCc-------
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVL---ISHYY-QFTPYNWGFKTTPQKN-------   88 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~---~~~~~-~~~~~~~~~~~~~~~~-------   88 (385)
                      +..+||+||||+|.+|+++|.+|++. |.+|+|||+|.....  ..|.   +.... .....+|.+.+.||..       
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~   84 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   84 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccc
Confidence            45689999999999999999999997 999999999985431  1221   11111 2335788887777621       


Q ss_pred             ------cccCC----CCCeeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHH-HHHHHHhhccCCCCC
Q psy10417         89 ------ACLGL----PNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL-KYFKKFERINIPELN  157 (385)
Q Consensus        89 ------~~~~~----~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~-~~~~~~e~~~~~~~~  157 (385)
                            .....    .++.+.+++|++|||+|.+|+|++.|+.+.||+.|.    .+|.|++|+ |||+++|++++++..
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~  160 (507)
T 1coy_A           85 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNNI  160 (507)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCC
T ss_pred             cccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCCCC
Confidence                  11111    456788899999999999999999999999999995    368999999 999999998875311


Q ss_pred             cccccccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCC-----CCC-C
Q psy10417        158 SDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGY-----TNI-D  231 (385)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~-----~~~-~  231 (385)
                                                         ...+      +   ......+..+.+.++++++|+     +.. +
T Consensus       161 -----------------------------------~~~~------~---~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d  196 (507)
T 1coy_A          161 -----------------------------------DQAW------F---ESTEWYKFARTGRKTAQRSGFTTAFVPNVYD  196 (507)
T ss_dssp             -----------------------------------CHHH------H---HHCGGGHHHHHHHHHHHHTTCCEEECCBSBC
T ss_pred             -----------------------------------CCcc------c---cccccchHHHHHHHHHHHcCCCCccCCcccc
Confidence                                               0000      0   000013567788889999998     331 2


Q ss_pred             CCC--------CCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CC---
Q psy10417        232 YNN--------PNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NG---  299 (385)
Q Consensus       232 ~~~--------~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g---  299 (385)
                      +++        ...|..++.|...|..+ |+++..+|+.++.++.|++|++++.|++|++++++.+++||++.+ +|   
T Consensus       197 ~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~  275 (507)
T 1coy_A          197 FEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVV  275 (507)
T ss_dssp             HHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEE
T ss_pred             cCcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccc
Confidence            221        11256677788888999 999999999887777889999999999999984224899999986 55   


Q ss_pred             eEEEEEeCcEEEEcCCCcccHHHHHHcC-CCChhhhhhcCCCcccccc-chhhhhhccCC
Q psy10417        300 HKRSVFARKEVIVSSGAFNSPKLLMLSG-VGPREHLTELGIPVVQDLR-VGDNLMEHVAY  357 (385)
Q Consensus       300 ~~~~i~a~k~VVlAaGa~~tp~LL~~Sg-ig~~~~l~~~gi~~~~~~p-vG~~l~dh~~~  357 (385)
                      +.++++|+ +||||||+|+||+||++|| +|.        +|..  .+ ||+||+||+..
T Consensus       276 ~~~~~~A~-~VIlaaGa~~sp~lL~~Sg~iG~--------lpnl--~d~VG~~l~~h~~~  324 (507)
T 1coy_A          276 ATKVVTAD-RVFFAAGSVGTSKLLVSMKAQGH--------LPNL--SSQVGEGWGNNGNI  324 (507)
T ss_dssp             EEEEEEEE-EEEECSHHHHHHHHHHHHHHTTS--------STTS--CTTTTCCBBCTTEE
T ss_pred             ccEEEEeC-EEEEccCccCCHHHHHhcccCCC--------CCcc--ChhhCCccccCCcc
Confidence            46789995 9999999999999999999 872        2311  23 99999999973

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.91  E-value=3.8e-24  Score=220.24  Aligned_cols=280  Identities=14%  Similarity=0.162  Sum_probs=174.5

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCcccc------chhhh---c--------cccC--CCC---
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTD------LVLIS---H--------YYQF--TPY---   77 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~------~p~~~---~--------~~~~--~~~---   77 (385)
                      +..+|||||||+|++|+++|..|+++ |++|+|||+++.......      .....   .        ....  -..   
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~  121 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTL  121 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCC
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccc
Confidence            34579999999999999999999998 999999999876542110      00000   0        0000  000   


Q ss_pred             --------ccccccccCCccccCCCC----Ceeee----cCcceecccccccCcEEecCChhhHHHHHhcCCCCC-Chhh
Q psy10417         78 --------NWGFKTTPQKNACLGLPN----NQCLW----PQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW-SFDD  140 (385)
Q Consensus        78 --------~~~~~~~~~~~~~~~~~~----~~~~~----~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w-~~~~  140 (385)
                              .|...     ........    ..+..    ..+..+||.+.+|.+..+|..+.+  .+....+..+ .+.+
T Consensus       122 ~~~~~~~~~~~~~-----~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e--~~~~l~~~~v~~~~~  194 (623)
T 3pl8_A          122 VVDTLSPTSWQAS-----TFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQ--RPLLVKDDADADDAE  194 (623)
T ss_dssp             CCCCSCTTSCCCS-----SCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGG--SCCSSTTCHHHHHHH
T ss_pred             ccccccccccccC-----cEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHH--hhhhhcccCccChhh
Confidence                    01000     00000000    00111    245668999999999998887753  1111111112 4678


Q ss_pred             HHHHHHHHhhccCCCCCcccccccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHH-HHHH
Q psy10417        141 VLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLS-DIFL  219 (385)
Q Consensus       141 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~  219 (385)
                      +.++|+..+.+++...                                     ..+              ..... ....
T Consensus       195 l~~~~~~~~~l~~vgg-------------------------------------~~~--------------~~~~~~~~~~  223 (623)
T 3pl8_A          195 WDRLYTKAESYFQTGT-------------------------------------DQF--------------KESIRHNLVL  223 (623)
T ss_dssp             HHHHHHHHHHHHTEES-------------------------------------CTT--------------TTCHHHHHHH
T ss_pred             HHHHHHHHHHhccccc-------------------------------------ccc--------------cCccccccch
Confidence            8899999888765321                                     000              00011 1111


Q ss_pred             HHHHHcCCCCCCCCCCCCCceeeeeeccccCCcccchhHHhhhhh------ccCCCeEEEeCcEEEEEEEcCCCCeEEEE
Q psy10417        220 KSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPI------IDRTNLHVIKNSRVVKIIIDPISKQAKGV  293 (385)
Q Consensus       220 ~~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~------~~~~g~~i~~~~~V~~i~~~~~~~~v~GV  293 (385)
                      ..+.........+...  +......   .....+.++..+++.+.      .+++|++|++++.|++|+.++++++++||
T Consensus       224 ~~l~~~~~~~~~~~~~--p~a~~~~---~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~v~~~~~V~~i~~~~~~~~v~GV  298 (623)
T 3pl8_A          224 NKLTEEYKGQRDFQQI--PLAATRR---SPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESL  298 (623)
T ss_dssp             HHHHHHTTTTSCCEEC--CEEEEEE---ETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEEEEEEEECTTSSCEEEE
T ss_pred             HHHHHhhhhccccccc--chhhccC---CCCccccchHHhhhhhhhcchhhccCCCEEEEeCCEEEEEEEECCCCEEEEE
Confidence            1111110000000000  1111000   11234666677788766      55679999999999999998544699999


Q ss_pred             EEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc-chhhhhhccCCCceEEEEcCC
Q psy10417        294 ELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVAYSALTFGINKT  367 (385)
Q Consensus       294 ~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p-vG~~l~dh~~~~~~~~~~~~~  367 (385)
                      ++.+  +|+.+++.|+ +||||+|++.+|+||+.||||+...++.+||++  ++| ||+||+||+.+ .+.|.+++.
T Consensus       299 ~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~-~~~~~~~~~  371 (623)
T 3pl8_A          299 HIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLV-FCQTVMSTE  371 (623)
T ss_dssp             EEEETTTCCEEEECEE-EEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEE-EEEEEECHH
T ss_pred             EEEEcCCCcEEEEECC-EEEEcCCCcCCHHHHHhcCCCccccccccCCCC--CCcccccchhhCcCc-eEEEEECCc
Confidence            9987  5778899995 999999999999999999999999999999998  999 99999999996 888888764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.66  E-value=5e-15  Score=149.17  Aligned_cols=65  Identities=20%  Similarity=0.357  Sum_probs=52.4

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc-cHHHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN-SPKLLML  325 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~-tp~LL~~  325 (385)
                      .|...+++.|++|+++++|++|+.++ +++|+||++.++++.++++|+|.||||+|++. ++.++..
T Consensus       207 ~L~~~~~~~Gv~i~~~t~v~~L~~~~-~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~  272 (510)
T 4at0_A          207 PLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIEA  272 (510)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEECT-TCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHcCCEEEecCEeEEEEECC-CCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence            34344555699999999999999874 47999999998888888999558999999998 5555543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.49  E-value=4.8e-13  Score=136.36  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=48.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCC-CeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~-~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      .|...+++.|++|+++++|++|+.+  + ++++||++.+ +|+..+++| +.||||+|++...+
T Consensus       255 ~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A-~~VVlAtGg~s~~~  315 (566)
T 1qo8_A          255 TLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNK  315 (566)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEE-EEEEECCCCCTTCH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEc-CEEEEecCCcccCH
Confidence            3434455679999999999999987  5 8999999985 677778999 58999999998643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.47  E-value=6.2e-13  Score=135.66  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .|...+++.|++|+++++|++|+.++ +++++||.+.+ +|+..++.|+ .||+|+|++..
T Consensus       260 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg~~~  318 (571)
T 1y0p_A          260 VLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKAD-AVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECS-EEEECCCCCTT
T ss_pred             HHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECC-eEEEeCCCccc
Confidence            34444556799999999999999873 37999999987 6777789995 79999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.45  E-value=4.7e-13  Score=128.02  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc-CCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLS-GVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~S-gig  329 (385)
                      ..+++.|++|+++++|++|..++  +.+..|.+. +|+..+++|+ .||+|+|+ ++..|+... |+.
T Consensus       158 ~~~~~~Gv~i~~~~~v~~i~~~~--~~~~~v~~~-~g~~~~~~a~-~VV~A~G~-~s~~l~~~~~g~~  220 (369)
T 3dme_A          158 GDAESDGAQLVFHTPLIAGRVRP--EGGFELDFG-GAEPMTLSCR-VLINAAGL-HAPGLARRIEGIP  220 (369)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECT--TSSEEEEEC-TTSCEEEEEE-EEEECCGG-GHHHHHHTEETSC
T ss_pred             HHHHHCCCEEECCCEEEEEEEcC--CceEEEEEC-CCceeEEEeC-EEEECCCc-chHHHHHHhcCCC
Confidence            34556799999999999999873  332335443 4545579995 89999997 588888877 764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.39  E-value=6.6e-12  Score=121.92  Aligned_cols=61  Identities=21%  Similarity=0.408  Sum_probs=45.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +...+++.|++|+++++|++|..+  ++++.+|++.+ |   +++++ .||+|+|+ .++.++...|+.
T Consensus       180 l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~-g---~~~a~-~vV~a~G~-~s~~l~~~~g~~  240 (405)
T 2gag_B          180 FARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTR-G---TIHAG-KVALAGAG-HSSVLAEMAGFE  240 (405)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETT-C---CEEEE-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCC-c---eEECC-EEEECCch-hHHHHHHHcCCC
Confidence            333445679999999999999987  56777777643 3   68894 89999997 566777766653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.39  E-value=2.2e-12  Score=124.55  Aligned_cols=59  Identities=17%  Similarity=0.259  Sum_probs=45.3

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ..+++.|++|+++++|++|..+  ++++++|++.+ |   +++|+ .||+|+|+ +++.|+...|+.
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~-g---~i~a~-~VV~A~G~-~s~~l~~~~g~~  215 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNK-G---IIKTG-IVVNATNA-WANLINAMAGIK  215 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEES--SSBEEEEEETT-E---EEECS-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHCCCEEECCceEEEEEEE--CCEEEEEEECC-c---EEECC-EEEECcch-hHHHHHHHcCCC
Confidence            3445679999999999999987  57888887632 3   68995 79999997 566777666653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.36  E-value=1.8e-11  Score=125.51  Aligned_cols=56  Identities=14%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+.+.|++|++++.|++|+.+  ++++.||.+.+  +|+.+.+.| +.||||+|++..
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-~~VVlATGG~~~  218 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRA-KNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccc
Confidence            333455689999999999999987  68999999875  577778999 589999999874

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.36  E-value=3.5e-12  Score=122.68  Aligned_cols=58  Identities=24%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ..+++.|++|+++++|++|..+  +++ .+|++.+ |   +++|+ .||+|+|+ +++.|+...|+.
T Consensus       162 ~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~-g---~i~a~-~VV~A~G~-~s~~l~~~~g~~  219 (381)
T 3nyc_A          162 RGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDA-G---SYRAA-VLVNAAGA-WCDAIAGLAGVR  219 (381)
T ss_dssp             HHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSS-E---EEEES-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCC-C---EEEcC-EEEECCCh-hHHHHHHHhCCC
Confidence            3455679999999999999987  444 4454432 2   78995 79999996 678888777754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.35  E-value=1.9e-11  Score=124.70  Aligned_cols=62  Identities=23%  Similarity=0.259  Sum_probs=48.9

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCC-CeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPIS-KQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS-PKLLM  324 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~-~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t-p~LL~  324 (385)
                      .|...+++.|++|+++++|++|+.+  + ++++||.+.+ +|+..++.| +.||||+|++.. +.++.
T Consensus       260 ~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A-~~VVlAtGg~~~~~~~~~  324 (572)
T 1d4d_A          260 VLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERVS  324 (572)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHHH
T ss_pred             HHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEc-CEEEEeCCCCccCHHHHH
Confidence            3434455679999999999999987  5 7999999985 677778999 589999999874 55543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.35  E-value=1.3e-11  Score=125.62  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+.+.|++|+++++|++|..+  ++++.||++.+  +|+...++| +.||+|+|+ ++..++...|+.
T Consensus       179 ~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A-~~VV~AaG~-~s~~l~~~~g~~  242 (561)
T 3da1_A          179 EAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYA-KKVVNAAGP-WVDTLREKDRSK  242 (561)
T ss_dssp             HHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEE-EEEEECCGG-GHHHHHHTTTCC
T ss_pred             HHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEEC-CEEEECCCc-chHHHHHhcCCC
Confidence            345679999999999999998  68999999987  566778999 589999996 688888877765

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.33  E-value=4.3e-11  Score=122.30  Aligned_cols=54  Identities=7%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+.+.|++|++++.|++|+.++ +++++||.+.+  +|+.+.+.| +.||||+|++..
T Consensus       152 ~~~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGg~~~  207 (588)
T 2wdq_A          152 QNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKA-RATVLATGGAGR  207 (588)
T ss_dssp             HHHHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred             HHHhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEc-CEEEECCCCCcc
Confidence            4445699999999999999853 47899999874  566678999 589999999764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.33  E-value=2.6e-11  Score=125.28  Aligned_cols=53  Identities=9%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+.+.|++|++++.|++|+.+  +++++||.+.+  +|+.+.+.|+ .||||+|++..
T Consensus       167 ~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  221 (660)
T 2bs2_A          167 ECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYGR  221 (660)
T ss_dssp             HHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCGG
T ss_pred             HHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcC-EEEEccCcchh
Confidence            444569999999999999987  68999999874  5777789994 89999999874

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.31  E-value=6.8e-11  Score=114.69  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..++||||||+|++|+++|+.|+++ |.+|+||||+..
T Consensus         2 ~~~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~   38 (397)
T 2oln_A            2 TESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTF   38 (397)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            3469999999999999999999998 999999999763

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.29  E-value=9.5e-12  Score=122.42  Aligned_cols=57  Identities=21%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             hhhhccCCCeEEEeCc---EEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNS---RVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~---~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      |...+++.|++|++++   +|++|+.+  +++++||++.+ |+  +++|+ .||+|+|++ ++.|+.
T Consensus       167 L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~-G~--~i~Ad-~VV~AtG~~-s~~l~~  226 (438)
T 3dje_A          167 AAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTAD-GK--IWRAE-RTFLCAGAS-AGQFLD  226 (438)
T ss_dssp             HHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETT-TE--EEECS-EEEECCGGG-GGGTSC
T ss_pred             HHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECC-CC--EEECC-EEEECCCCC-hhhhcC
Confidence            3334556799999999   99999987  67899998765 32  68895 799999985 666654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.29  E-value=3.3e-11  Score=122.77  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=49.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .+.+.|++|+++++|++|..+  ++++.+|++.+  +++..+++|+ .||+|+|+ ++..++...|+
T Consensus       197 ~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~-ws~~l~~~~g~  259 (571)
T 2rgh_A          197 KAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAK-LVINTSGP-WVDKVRNLNFT  259 (571)
T ss_dssp             HHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBS-CEEECCGG-GHHHHHTTCCS
T ss_pred             HHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcC-EEEECCCh-hHHHHHHhhcc
Confidence            345679999999999999988  67899999886  4666689995 89999997 57787765554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.29  E-value=1.4e-11  Score=131.13  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      ..+++.|++|++++.|++|..+  ++++++|.+.+ |   +++|+ .||+|+|+ +++.++...|+
T Consensus       159 ~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~-G---~i~Ad-~VV~AaG~-~s~~l~~~~g~  216 (830)
T 1pj5_A          159 KRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTAD-G---VIPAD-IVVSCAGF-WGAKIGAMIGM  216 (830)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETT-E---EEECS-EEEECCGG-GHHHHHHTTTC
T ss_pred             HHHHHcCCEEECCceEEEEEEe--CCEEEEEEECC-c---EEECC-EEEECCcc-chHHHHHHhCC
Confidence            3455679999999999999987  57787876643 3   68995 89999997 56777766664

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.25  E-value=1.1e-10  Score=118.13  Aligned_cols=51  Identities=18%  Similarity=0.351  Sum_probs=42.8

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCC------eEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISK------QAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~------~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ..|++|++++.|++|+.++ ++      ++.||.+.+  +|+.+++.| +.||+|+|++..
T Consensus       151 ~~gv~i~~~~~v~~L~~~~-~g~~~~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~  209 (540)
T 1chu_A          151 HPNIRVLERTNAVDLIVSD-KIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGASK  209 (540)
T ss_dssp             CTTEEEECSEEEEEEEEGG-GTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCGG
T ss_pred             CCCCEEEeCcEEEEEEEcC-CCCcccCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence            3799999999999999842 34      899999986  677778999 589999999774

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.24  E-value=2.3e-11  Score=125.54  Aligned_cols=50  Identities=16%  Similarity=0.225  Sum_probs=41.6

Q ss_pred             CeEEEeCcEEEEEEEcCC-CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        269 NLHVIKNSRVVKIIIDPI-SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       269 g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |++|+.++.|++|+.+++ .+++.||.+.+  +|+.+.+.| +.||||+|++..
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVLATGG~g~  234 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKA-NAMVVACGGAVN  234 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBCS
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEe-CEEEECCCcccc
Confidence            999999999999998741 14999998875  567778999 589999999873

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.22  E-value=2.1e-10  Score=110.61  Aligned_cols=35  Identities=37%  Similarity=0.559  Sum_probs=33.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ++||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            68999999999999999999998 999999999753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.22  E-value=1.1e-10  Score=119.63  Aligned_cols=54  Identities=15%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             hccCCC-eEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccH
Q psy10417        264 IIDRTN-LHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       264 ~~~~~g-~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      .+.+.+ ++|++++.|++|+.+  +++++||.+.+  +|+.+.+.|+ .||+|+|++...
T Consensus       143 ~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s~~  199 (602)
T 1kf6_A          143 TSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGRV  199 (602)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCGGG
T ss_pred             HHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCccc
Confidence            344445 999999999999988  67999998774  5777789995 799999997754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.22  E-value=1.5e-10  Score=120.29  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||||||+|++|+++|+.|+++ |.+|+|||+..
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRR-GWQVTLYCADE  305 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            458999999999999999999998 99999999965

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.22  E-value=1e-10  Score=120.78  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=44.1

Q ss_pred             hhhhccCC-Ce-EEEeCcEEEEEEEcCC-CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRT-NL-HVIKNSRVVKIIIDPI-SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~-g~-~i~~~~~V~~i~~~~~-~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      +...+++. |+ +|++++.|++|+.+++ .++|+||.+.+  +|+.+.+.| +.||+|+|++..
T Consensus       157 l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGG~~~  219 (643)
T 1jnr_A          157 IAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA-KAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBCS
T ss_pred             HHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEc-CEEEECCCcccc
Confidence            33344444 89 9999999999998731 03999998763  566668999 589999999874

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.22  E-value=3.5e-11  Score=118.75  Aligned_cols=35  Identities=40%  Similarity=0.651  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G   56 (385)
                      +.++||||||+|++|+++|++|+++ | .+|+|||+.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~-G~~~V~vlE~~   56 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAG   56 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHH-HCSCEEEEESS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEccC
Confidence            3689999999999999999999998 9 999999993

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.19  E-value=1.1e-11  Score=122.71  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      |...+++.|++|+++++|++|..+  ++++.+|++.+ |+  +++|+ .||+|+|++..|
T Consensus       140 L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~-G~--~i~Ad-~VVlAtGg~s~~  193 (447)
T 2i0z_A          140 LLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQT-GE--VLETN-HVVIAVGGKSVP  193 (447)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETT-CC--EEECS-CEEECCCCSSSG
T ss_pred             HHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECC-CC--EEECC-EEEECCCCCcCC
Confidence            333455579999999999999987  57888887754 43  58895 799999998755

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.18  E-value=5.5e-11  Score=114.52  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=34.7

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ....++||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus        13 ~~~~~~dvvIIGgG~~Gl~~A~~La~~-G~~V~llE~~~~   51 (382)
T 1ryi_A           13 AMKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTM   51 (382)
T ss_dssp             -CCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            345679999999999999999999998 999999999753

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.18  E-value=8.3e-11  Score=113.22  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      +|...+.+.|++++.++.|+.+..+  ++++++|....+++..+++| +.||-|.|+ .|.
T Consensus       107 ~L~~~a~~~G~~~~~~~~v~~~~~~--~~~~~~v~~~~~~~~~~~~a-~~vIgAdG~-~S~  163 (397)
T 3oz2_A          107 HLAALAAKAGADVWVKSPALGVIKE--NGKVAGAKIRHNNEIVDVRA-KMVIAADGF-ESE  163 (397)
T ss_dssp             HHHHHHHHHTCEEESSCCEEEEEEE--TTEEEEEEEEETTEEEEEEE-EEEEECCCT-TCH
T ss_pred             HHHHHHHhcCcEEeeeeeeeeeeec--cceeeeeeecccccceEEEE-eEEEeCCcc-ccH
Confidence            4444555679999999999999988  78999999888888889999 467777775 443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.16  E-value=5.9e-10  Score=106.87  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=32.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ++||||||+|++|+++|++|+++ |.+|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            58999999999999999999998 999999999764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.14  E-value=4.1e-10  Score=112.97  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=44.6

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .+.+.|++|+++++|++|..+  + ++.+|.+.+  +|+..+++|+ .||+|+|+ ++..++.
T Consensus       158 ~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~-~s~~l~~  215 (501)
T 2qcu_A          158 MVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQAR-GLVNATGP-WVKQFFD  215 (501)
T ss_dssp             HHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEES-CEEECCGG-GHHHHHH
T ss_pred             HHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECC-EEEECCCh-hHHHHHH
Confidence            344579999999999999987  3 577888875  5666789995 89999997 5777765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.11  E-value=5.4e-11  Score=119.04  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=41.2

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLML  325 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~  325 (385)
                      |...+++.|++|+++++|++|+.+  +++++||++.++.   ++.|+ .||+++....+.+.|+.
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~---~~~ad-~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGR---RFLTQ-AVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSC---EEECS-CEEECCC----------
T ss_pred             HHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCc---EEEcC-EEEECCCHHHHHHHhcc
Confidence            334556789999999999999999  7899999987653   68895 79999998888776653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.10  E-value=9.9e-10  Score=114.42  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||||||+|++|+++|+.|+++ |++|+|||++..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCc
Confidence            468999999999999999999998 999999999753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.05  E-value=3.2e-10  Score=111.08  Aligned_cols=39  Identities=26%  Similarity=0.483  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +..++||||||+|++|+++|..|+++ |.+|+|||+++..
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~   62 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAP   62 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            35679999999999999999999998 9999999998754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.03  E-value=5.5e-09  Score=96.86  Aligned_cols=37  Identities=35%  Similarity=0.516  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||||||+|++|+++|..|++++|.+|+|||+.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            4689999999999999999999944999999999764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.96  E-value=6.9e-10  Score=108.41  Aligned_cols=57  Identities=23%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      |...+++.|++|+++++|++|..+  +++++||.+.  |+  ++.|+ .||+|+++..+.+||.
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~~--g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIE--NGKAAGIIAD--DR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET--TE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEEC--CE--EEECC-EEEECCCHHHHHHhcC
Confidence            333455679999999999999998  6789888763  43  68895 8999999988887654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.95  E-value=9.5e-10  Score=107.16  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +++|||||||+|++|+++|..|+++ |.+|+|||+++..
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~~   39 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKI   39 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            3579999999999999999999998 9999999998653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.95  E-value=4.8e-09  Score=105.86  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=45.8

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH--HHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK--LLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~--LL~~Sgig  329 (385)
                      +...+++.|++|+++++|++|..+  ++++.+|.+.++ +  ++.|+ .||+|+|+.....  +|...|+.
T Consensus       226 L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G-~--~i~Ad-~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          226 MRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNG-E--EIKSR-HVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTS-C--EEECS-CEEECCCTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCC-C--EEECC-EEEECCCCChhhHHHHHHHcCCC
Confidence            333445579999999999999987  678888887653 2  58895 7999999865433  44444543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.94  E-value=8.8e-09  Score=102.45  Aligned_cols=50  Identities=14%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .+++.|++|+.++.| +|..+  ++++.||.+...+.  .+.+ +.||+|+|++..
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g--~~~a-~~VVlAtGg~~~  177 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGL--VEDV-DKLVLATGGYSY  177 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEE--ECCC-SEEEECCCCCGG
T ss_pred             HHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCC--eEEe-eeEEECCCCCcc
Confidence            345679999999999 99887  67899998754222  4668 589999998663

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.94  E-value=8.9e-10  Score=109.10  Aligned_cols=43  Identities=26%  Similarity=0.388  Sum_probs=38.1

Q ss_pred             CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      ..++++|||||||+|.+|+++|+.|+++ |++|+|||+++....
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGG   57 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCCC
Confidence            3677899999999999999999999998 999999999987743

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.88  E-value=3.1e-08  Score=93.77  Aligned_cols=37  Identities=41%  Similarity=0.613  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      .+|||||||+|++|+++|+.|+++ +|.+|+|||++..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            468999999999999999999994 5999999999753

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.87  E-value=1.1e-08  Score=101.00  Aligned_cols=56  Identities=16%  Similarity=0.257  Sum_probs=44.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      |...+.+.|++|+.++.|+++..+  +++++||.+.+  +|+..+++|+ .||.|.|+...
T Consensus       106 L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~s~  163 (453)
T 3atr_A          106 VLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-EEEECCGGGCT
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcC-EEEECcCCchh
Confidence            433444579999999999999987  67899998876  5766789995 89999997543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.85  E-value=9.2e-09  Score=105.00  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=43.6

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA  316 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa  316 (385)
                      +|...+++.|++++.++.|++|..+  ++.+.+|.+.++|+..+++|+ .||.|+|+
T Consensus       133 ~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~Ad-lVV~AdG~  186 (591)
T 3i3l_A          133 LLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESD-FVIDAGGS  186 (591)
T ss_dssp             HHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEES-EEEECCGG
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcC-EEEECCCC
Confidence            4444555679999999999999987  566778888877777789995 89999996

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.84  E-value=1.8e-08  Score=101.17  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      +|...+++.|++|+.+++|++|..+  ++++++|.+.. +|+..++++ +.||.|+|...
T Consensus       116 ~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~a-d~VI~AdG~~S  172 (512)
T 3e1t_A          116 MLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHA-RFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEE-EEEEECCCTTC
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEc-CEEEECCCcch
Confidence            4444455579999999999999987  68999999875 466568999 58999999754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.77  E-value=3.1e-08  Score=96.53  Aligned_cols=35  Identities=29%  Similarity=0.577  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++||||||+|++|+++|..|+++ |.+|+|||+..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            359999999999999999999998 99999999975

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.77  E-value=1.6e-08  Score=102.98  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+|||||||+|.+|+.+|..||+. |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecc
Confidence            469999999999999999999998 99999999873

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.73  E-value=2.6e-08  Score=97.22  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=41.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      +...+++.|++|+++++|++|..+  ++++  |  ..+|+  ++.|+ .||+|+|+...++||-
T Consensus       195 l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V--~~~g~--~~~ad-~Vv~a~~~~~~~~ll~  249 (421)
T 3nrn_A          195 LERIIMENKGKILTRKEVVEINIE--EKKV--Y--TRDNE--EYSFD-VAISNVGVRETVKLIG  249 (421)
T ss_dssp             HHHHHHTTTCEEESSCCEEEEETT--TTEE--E--ETTCC--EEECS-EEEECSCHHHHHHHHC
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEEE--CCEE--E--EeCCc--EEEeC-EEEECCCHHHHHHhcC
Confidence            333556679999999999999977  5666  4  33343  68895 8999999988887663

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.73  E-value=1e-08  Score=104.64  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+|||||||||++|+.+|..||+. |.+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecc
Confidence            579999999999999999999998 99999999873

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.73  E-value=1.6e-07  Score=94.76  Aligned_cols=36  Identities=36%  Similarity=0.559  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||||||+|++|+++|..|+++ |.+|+||||.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            469999999999999999999998 999999999764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.71  E-value=3.5e-08  Score=100.73  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-----CCeE-------EEEEeCcEEEEcCCCcccH--HHHH
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-----NGHK-------RSVFARKEVIVSSGAFNSP--KLLM  324 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-----~g~~-------~~i~a~k~VVlAaGa~~tp--~LL~  324 (385)
                      .+|...+++.|++|+.++.|++|+.++ +++++||.+.+     +|+.       .+++| +.||+|.|+...-  +|+.
T Consensus       148 ~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~A-d~VV~AdG~~S~vr~~l~~  225 (584)
T 2gmh_A          148 SWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHA-KVTIFAEGCHGHLAKQLYK  225 (584)
T ss_dssp             HHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEEC-SEEEECCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEEC-CEEEEeeCCCchHHHHHHH
Confidence            344444555699999999999999874 46888998763     3432       47899 4899999986653  3333


Q ss_pred             HcCCC
Q psy10417        325 LSGVG  329 (385)
Q Consensus       325 ~Sgig  329 (385)
                      ..|+.
T Consensus       226 ~~gl~  230 (584)
T 2gmh_A          226 KFDLR  230 (584)
T ss_dssp             HTTTT
T ss_pred             HhCCC
Confidence            34543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.70  E-value=4.9e-08  Score=87.60  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ++|||+|||+|++|+.+|..|++. |.+|+|||++
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecC
Confidence            469999999999999999999998 9999999986

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.69  E-value=1.4e-07  Score=94.41  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=35.0

Q ss_pred             CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.+++||+|||+|++|+++|..|+++ |.+|+||||.+
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~   44 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLV   44 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            3567889999999999999999999998 99999999975

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.69  E-value=6.7e-08  Score=90.93  Aligned_cols=37  Identities=38%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      .++||+|||+|++|+++|..|+++ +|.+|+|+|+.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            457999999999999999999984 4899999999764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.69  E-value=7.3e-07  Score=86.90  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++....++.|++|++++.|++|..+  ++++++|++.++.   ++.++ .||+|+|...+..+|..+|+.
T Consensus       199 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~---~i~aD-~Vv~a~G~~p~~~l~~~~gl~  262 (415)
T 3lxd_A          199 FYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGS---VIPAD-IVIVGIGIVPCVGALISAGAS  262 (415)
T ss_dssp             HHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSC---EEECS-EEEECSCCEESCHHHHHTTCC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCC---EEEcC-EEEECCCCccChHHHHhCCCC
Confidence            4444556789999999999999876  6788888886542   68896 899999988888888888764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.69  E-value=7.6e-09  Score=100.77  Aligned_cols=37  Identities=32%  Similarity=0.674  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      .++||||||+|++|+++|+.|+++ +|.+|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            359999999999999999999985 4999999999753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.67  E-value=1.3e-07  Score=88.06  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=51.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++..+.++.|+++++++.|+++..+   +++.+|++.+  +|+..++.++ .||+|+|.-.+..+|..+|+.
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~g~~  262 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAKSNGIE  262 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHHHTTCC
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEecc---CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHhhcCee
Confidence            3444455669999999999999865   4677888876  4666678996 899999987776788877764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.66  E-value=1.1e-07  Score=89.35  Aligned_cols=57  Identities=9%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      ..+..|+++++++.|++|..+  ++++++|.+.+  +++..++.++ .||+|+|...++.++
T Consensus       218 l~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  276 (338)
T 3itj_A          218 AEKNEKIEILYNTVALEAKGD--GKLLNALRIKNTKKNEETDLPVS-GLFYAIGHTPATKIV  276 (338)
T ss_dssp             HHHCTTEEEECSEEEEEEEES--SSSEEEEEEEETTTTEEEEEECS-EEEECSCEEECCGGG
T ss_pred             HHhcCCeEEeecceeEEEEcc--cCcEEEEEEEECCCCceEEEEeC-EEEEEeCCCCChhHh
Confidence            334569999999999999877  56788999987  4666789996 899999976665554

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.64  E-value=1.4e-08  Score=91.05  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=33.8

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+||+|||+|++|+++|+.|+++ |++|+||||.+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            58999999999999999999999 9999999998765

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.63  E-value=4.3e-08  Score=92.72  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +.|||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~   37 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            468999999999999999999998 999999999753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.62  E-value=1.4e-07  Score=96.28  Aligned_cols=37  Identities=35%  Similarity=0.494  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+|||||||+|.+|+.+|..||+. |.+|+|||+..
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   54 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDL   54 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecc
Confidence            34579999999999999999999998 99999999863

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.61  E-value=9.2e-08  Score=90.67  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~~   59 (385)
                      +||+|||+|++|+++|+.|++   + |.+|+|+||+...
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCCC
Confidence            599999999999999999999   8 9999999997643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.60  E-value=2.6e-07  Score=92.48  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..+++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            34679999999999999999999998 999999999753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.56  E-value=2.2e-07  Score=94.47  Aligned_cols=36  Identities=28%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+|||||||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            469999999999999999999998 999999999754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.53  E-value=4.1e-07  Score=93.77  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhc-CCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G~   57 (385)
                      +..++||||||+|++|+++|..|++ . |.+|+||||.+
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~   66 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKE   66 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            3457999999999999999999999 9 99999999975

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.53  E-value=3e-07  Score=85.40  Aligned_cols=62  Identities=15%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      ++....++.|+++++++.|.+|..+  ++++.+|.+.. +|+..++.++ .||+|+|...+..++.
T Consensus       188 ~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  250 (315)
T 3r9u_A          188 TVEKVKKNEKIELITSASVDEVYGD--KMGVAGVKVKLKDGSIRDLNVP-GIFTFVGLNVRNEILK  250 (315)
T ss_dssp             HHHHHHHCTTEEEECSCEEEEEEEE--TTEEEEEEEECTTSCEEEECCS-CEEECSCEEECCGGGB
T ss_pred             HHHHHHhcCCeEEEeCcEEEEEEcC--CCcEEEEEEEcCCCCeEEeecC-eEEEEEcCCCCchhhh
Confidence            3444445789999999999999877  57888888872 4666689996 7999999766555543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.51  E-value=6.7e-08  Score=96.69  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ....+||+|||+|++|+++|..|++. |.+|+|||+.+.
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~  126 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIK  126 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSS
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccc
Confidence            34578999999999999999999998 999999999753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.47  E-value=6.5e-06  Score=79.85  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+....++.|+++++++.|++|..+  ++++++|++.++ +  ++.++ .||+|+|...+..++..+|+.
T Consensus       189 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG-~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          189 YFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDG-N--TLPCD-LVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTS-C--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCC-C--EEEcC-EEEECcCCccCHHHHHhCCCC
Confidence            4444556789999999999999877  578888887654 3  68896 899999987777888888764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.41  E-value=1.2e-07  Score=88.47  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+++|||+|||||+||++||.+|+++ |++|+|+|++..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~~~   40 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNNTN   40 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            45679999999999999999999998 999999999753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.38  E-value=1.1e-06  Score=82.25  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+|||+|++|+++|..|++. |.+|+|+|+.+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence            58999999999999999999998 99999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.36  E-value=1.1e-06  Score=86.66  Aligned_cols=37  Identities=27%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCC-----ceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPS-----WKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G-----~~VlvLE~G~~~   59 (385)
                      +.|||||||+|++|+++|..|++. |     .+|+|||+.+..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCCC
Confidence            568999999999999999999998 8     999999998743

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.34  E-value=2e-07  Score=93.02  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCcc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIF   62 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~   62 (385)
                      ...+||||||||++||+||++|+++.|++|+|||+.+.....
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~   49 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGL   49 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCC
Confidence            347999999999999999999998449999999998877543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.34  E-value=2.2e-07  Score=86.78  Aligned_cols=35  Identities=34%  Similarity=0.546  Sum_probs=32.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +|||+|||+|+||+++|.+|++. |++|+|+|++..
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~~~   40 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERGIP   40 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            79999999999999999999998 999999999643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.34  E-value=3e-07  Score=90.79  Aligned_cols=42  Identities=31%  Similarity=0.483  Sum_probs=38.2

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .+..++||||||+|++|+++|..|+++ |++|+|||+.+....
T Consensus         7 ~~~~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            7 TIDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             hccccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCc
Confidence            456789999999999999999999998 999999999987754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.32  E-value=2.1e-07  Score=86.65  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      .....+...+..+.+.++...  +....++.+.+  .+...++.++ .|++|.|...+..+|
T Consensus       197 ~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~d-~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          197 VLNHPKIEVIWNSELVELEGD--GDLLNGAKIHNLVSGEYKVVPVA-GLFYAIGHSPNSKFL  255 (314)
T ss_dssp             HHTCTTEEEECSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             hhcccceeeEeeeeeEEEEee--eeccceeEEeecccccceeeccc-cceEecccccChhHh
Confidence            345678999999999999876  56677787764  3556689996 899999977666665

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.29  E-value=4e-07  Score=85.77  Aligned_cols=39  Identities=36%  Similarity=0.474  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhc-CCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G~~~   59 (385)
                      ..++||+|||||++|+++|++|++ +.|++|+|+|+++..
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            346899999999999999999985 249999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.26  E-value=5.1e-07  Score=86.16  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |..++||||||+|++|+++|++|+++ |.+|+|||+..
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccC
Confidence            34579999999999999999999998 99999999975

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.25  E-value=3.8e-06  Score=84.74  Aligned_cols=36  Identities=28%  Similarity=0.562  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhh-cCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLS-EVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La-~~~G~~VlvLE~G~~   58 (385)
                      ..+||||||+|++|+++|.+|+ +. |.+|+|+|+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~-G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEECCCC
Confidence            4689999999999999999999 87 999999999753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.21  E-value=3.6e-06  Score=85.09  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...+||||||+|++|+.+|.+|++. |.+|+|||+++.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            4579999999999999999999998 999999999753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.21  E-value=7.1e-07  Score=86.58  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...+.|||||||+|++|+++|..|+++ |.+|+||||.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~   57 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKE   57 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            456679999999999999999999998 999999999753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.20  E-value=5.2e-06  Score=82.16  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             HHhhhhhccCCCeE--EEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417        258 KAYLKPIIDRTNLH--VIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSG  327 (385)
Q Consensus       258 ~~~l~~~~~~~g~~--i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg  327 (385)
                      ..++...+++.|++  |+.++.|++|..++++++. .|.+.+  +|+..++.++ .||+|+|.+..|++....|
T Consensus       104 ~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~-~V~~~~~~~g~~~~~~~d-~VVvAtG~~s~p~~p~ipG  175 (464)
T 2xve_A          104 WDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTF-TVTVQDHTTDTIYSEEFD-YVVCCTGHFSTPYVPEFEG  175 (464)
T ss_dssp             HHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEE-EEEEEETTTTEEEEEEES-EEEECCCSSSSBCCCCCBT
T ss_pred             HHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcE-EEEEEEcCCCceEEEEcC-EEEECCCCCCCCccCCCCC
Confidence            34555555555777  8999999999987422233 355555  3555678895 8999999887776543334

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.16  E-value=8.4e-07  Score=86.58  Aligned_cols=35  Identities=43%  Similarity=0.683  Sum_probs=33.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      |||||||+|++|+++|++|+++ |.+|+|||+.+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            7999999999999999999999 9999999997655

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.08  E-value=1.7e-06  Score=83.96  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=36.6

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      |.+++||+|||+|++|+++|++|++++|.+|+|||+.+....
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            445799999999999999999999954899999999987643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.06  E-value=1.9e-06  Score=83.72  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCce-EEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~~   58 (385)
                      +.++||||||+|++|+++|..|+++ |.+ |+|||+.+.
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   39 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   39 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCC
Confidence            4568999999999999999999998 999 999999753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.06  E-value=2.7e-06  Score=82.23  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +..++||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus        23 ~~~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   60 (398)
T 2xdo_A           23 LLSDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDND   60 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            35679999999999999999999998 999999999753

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.02  E-value=2.5e-06  Score=85.60  Aligned_cols=39  Identities=28%  Similarity=0.523  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+||||||||++|+++|++|+++ |++|+|||+.+...
T Consensus         2 ~~~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            2 SNKCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVG   40 (520)
T ss_dssp             -CBCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSB
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            3568999999999999999999998 99999999987663

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.01  E-value=3.4e-06  Score=81.66  Aligned_cols=40  Identities=33%  Similarity=0.580  Sum_probs=36.3

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ....+||+|||+|++|+++|++|+++ |.+|+|||+.+...
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCC
Confidence            45679999999999999999999998 99999999987664

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.01  E-value=3.6e-06  Score=83.65  Aligned_cols=40  Identities=23%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +.+.+||+|||+|++|+++|++|+++ |.+|+|||+.+...
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~G   47 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPG   47 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCC
Confidence            45678999999999999999999998 99999999988764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.01  E-value=3e-06  Score=81.30  Aligned_cols=37  Identities=43%  Similarity=0.661  Sum_probs=34.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ++||+|||+|++|+++|++|+++ |.+|+|+|+++...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIG   37 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence            47999999999999999999998 99999999987654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.01  E-value=3.4e-06  Score=82.09  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~~~   60 (385)
                      .+.+||+|||||++|+++|++|+++ | .+|+|+|+.+...
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVG   43 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCC
Confidence            3568999999999999999999998 9 9999999987664

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.01  E-value=2.7e-06  Score=84.70  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             CCC-CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         19 RLL-DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        19 ~~~-~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|. .+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus        21 ~M~~~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   59 (484)
T 3o0h_A           21 SMGSFDFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEYR   59 (484)
T ss_dssp             ---CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCcCCCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeCCC
Confidence            443 379999999999999999999998 99999999943

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.00  E-value=2.9e-06  Score=79.25  Aligned_cols=61  Identities=28%  Similarity=0.432  Sum_probs=47.9

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +.+.|+++++++.|++|..+  ++++.+|.+.+  +|+..++.++ .||+|+|...+..+|..+|+
T Consensus       200 l~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          200 IKKRNIPYIMNAQVTEIVGD--GKKVTGVKYKDRTTGEEKLIETD-GVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HHHTTCCEECSEEEEEEEES--SSSEEEEEEEETTTCCEEEECCS-EEEECCCEEECCGGGTTSCC
T ss_pred             HhcCCcEEEcCCeEEEEecC--CceEEEEEEEEcCCCceEEEecC-EEEEeeCCccChHHHhhccc
Confidence            34579999999999999876  56788898885  5666679996 89999997766667665554

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.00  E-value=3e-06  Score=81.83  Aligned_cols=36  Identities=28%  Similarity=0.583  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            368999999999999999999998 999999999753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.99  E-value=2.7e-06  Score=85.28  Aligned_cols=39  Identities=31%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCCCCc
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDEDRI   61 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~~~~   61 (385)
                      ..+||||||||++|+++|++|+++ | .+|+|||+.+....
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCCC
Confidence            468999999999999999999998 9 99999999887643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.99  E-value=3.6e-06  Score=80.81  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..+||+|||+|++|+++|..|+++ |.+|+|+|+...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            468999999999999999999998 999999999764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.98  E-value=2.2e-06  Score=84.33  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCC------ceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPS------WKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G------~~VlvLE~G~~~~   60 (385)
                      .+||||||+|++|+++|++|+++ |      .+|+|||+.+...
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCC
Confidence            58999999999999999999998 8      9999999987653

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.98  E-value=2.7e-06  Score=81.98  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++||+|||+|++|+++|..|+++ |.+|+|||+.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            58999999999999999999998 99999999965

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.97  E-value=3.7e-06  Score=83.14  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +...+||||||+|++|+++|+.|+++ |.+|+|||+.+...
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLG   52 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCC
Confidence            45578999999999999999999998 99999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.97  E-value=3e-06  Score=84.09  Aligned_cols=35  Identities=37%  Similarity=0.639  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|||+|||+|++|+++|.+|++. |++|+|+|++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            479999999999999999999998 99999999986

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.97  E-value=3.9e-06  Score=82.92  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=33.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~~~~   60 (385)
                      +||+|||||++|+++|++|+++ |.  +|+|||+.+...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCC
Confidence            6999999999999999999998 99  999999987654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.97  E-value=4.8e-06  Score=81.66  Aligned_cols=40  Identities=28%  Similarity=0.487  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +..++||||||+|++|+++|..|+++ |++|+|+|+.+...
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYG   42 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCcc
Confidence            56689999999999999999999998 99999999987664

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.95  E-value=4.7e-06  Score=80.55  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..+||+|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            468999999999999999999998 999999999753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.95  E-value=2.8e-06  Score=80.59  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC------ceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS------WKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G------~~VlvLE~G~   57 (385)
                      .||||||+|++|+++|++|+++ |      .+|+|||++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            3999999999999999999998 7      9999999975

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.94  E-value=4.6e-06  Score=83.07  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=45.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      +...+++.|++|++++.|+++..+  ++.+ .|.+.+  +|+..++.++ .||+|+|.-.+..+  |..+|+
T Consensus       245 l~~~l~~~gV~v~~~~~v~~i~~~--~~~~-~v~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~l~l~~~g~  312 (491)
T 3urh_A          245 LQRMLTKQGIDFKLGAKVTGAVKS--GDGA-KVTFEPVKGGEATTLDAE-VVLIATGRKPSTDGLGLAKAGV  312 (491)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEE--TTEE-EEEEEETTSCCCEEEEES-EEEECCCCEECCTTSCHHHHTC
T ss_pred             HHHHHHhCCCEEEECCeEEEEEEe--CCEE-EEEEEecCCCceEEEEcC-EEEEeeCCccCCCccCchhcCc
Confidence            444556679999999999999876  3433 355654  2544578996 89999997666554  555665

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.94  E-value=4.2e-06  Score=82.85  Aligned_cols=38  Identities=32%  Similarity=0.527  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..+|||||||+|++|+++|.+|++. |.+|+|+|+.+..
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~~   39 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGEL   39 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSSS
T ss_pred             CccceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCC
Confidence            3469999999999999999999998 9999999976654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.94  E-value=5.4e-06  Score=82.63  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +.+.+||+|||+|++|+++|+.|+++ |++|+|||+.+...
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~G   49 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAG   49 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence            45678999999999999999999998 99999999988764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.93  E-value=5e-06  Score=79.07  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +....++.|+++++++.|++|..+  ++++.+|.+. .+|+..++.++ .||+|+|.-.+..+|..+|+
T Consensus       208 l~~~~~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~  273 (360)
T 3ab1_A          208 VERARANGTIDVYLETEVASIEES--NGVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLARWDL  273 (360)
T ss_dssp             SHHHHHHTSEEEESSEEEEEEEEE--TTEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGGSSC
T ss_pred             HHHHhhcCceEEEcCcCHHHhccC--CCceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHhhcc
Confidence            333445578999999999999877  5788888886 34655678996 89999996555556655554

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.92  E-value=6.4e-06  Score=79.10  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=35.8

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC-CCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG-DED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G-~~~   59 (385)
                      .....+||+|||+|++|+++|++|+++ |++|+|||+. +..
T Consensus        40 ~~~~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           40 PPGPPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRV   80 (376)
T ss_dssp             SCCSCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCC
T ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHC-CCcEEEEecccccc
Confidence            345578999999999999999999998 9999999998 655

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.92  E-value=5.9e-06  Score=77.57  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +...+++.|+++++++.|++|..+   +++.+|.+..  +|+..++.++ .||+|+|.-.+..+|..+|+
T Consensus       197 l~~~l~~~gv~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~  262 (335)
T 2zbw_A          197 LMKAHEEGRLEVLTPYELRRVEGD---ERVRWAVVFHNQTQEELALEVD-AVLILAGYITKLGPLANWGL  262 (335)
T ss_dssp             HHHHHHTTSSEEETTEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEEEECGGGGGSCC
T ss_pred             HHhccccCCeEEecCCcceeEccC---CCeeEEEEEECCCCceEEEecC-EEEEeecCCCCchHhhhcce
Confidence            444456679999999999999864   4677788774  4655679996 89999996655556655554

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.91  E-value=5.4e-06  Score=81.43  Aligned_cols=38  Identities=37%  Similarity=0.417  Sum_probs=34.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++||||||+|++|+++|++|+++ |++|+|||+.+...
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence            368999999999999999999998 99999999987653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.90  E-value=5.7e-06  Score=82.29  Aligned_cols=36  Identities=33%  Similarity=0.582  Sum_probs=33.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +||+|||+|++|+++|++|+++ |++|+|||+.+...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIG   75 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            8999999999999999999998 99999999987664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.89  E-value=6.2e-06  Score=75.74  Aligned_cols=34  Identities=32%  Similarity=0.647  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+|||+|++|+++|..|+++ |.+|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            48999999999999999999998 99999999865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.88  E-value=6.8e-06  Score=76.91  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=44.6

Q ss_pred             hhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        262 KPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       262 ~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      ....++.|++|++++.|++|..+   +++.+|.+.+  +|+..++.++ .||+|+|.-.+..+|.
T Consensus       195 ~~l~~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  255 (325)
T 2q7v_A          195 ARAFANPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFVK  255 (325)
T ss_dssp             HHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             HHHHhcCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHHh
Confidence            33344579999999999999864   4677888885  5666689996 8999999665555543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.88  E-value=5.3e-06  Score=81.23  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+|||+|++|+++|..|+++ |.+|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            347999999999999999999998 99999999975

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.87  E-value=6.6e-06  Score=81.32  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+|||+|||+|++|+++|.+|+++ |++|+|+|++.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk~~   38 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEFR   38 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            369999999999999999999998 99999999943

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.86  E-value=6.4e-06  Score=81.43  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=33.5

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~   59 (385)
                      .+||+|||+|++|+++|++|+++ |  .+|+|||+.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence            58999999999999999999998 8  999999997665

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.86  E-value=8e-06  Score=69.65  Aligned_cols=33  Identities=36%  Similarity=0.639  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ||++|||+|++|+.+|..|++. |.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            7999999999999999999998 99999999975

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.85  E-value=8.8e-06  Score=82.00  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~   58 (385)
                      ..+||||||+|++|+++|..|++   + |.+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ-QANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS-SCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC-CCEEEEECCCCC
Confidence            46899999999999999999999   8 999999999653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.84  E-value=1e-05  Score=81.24  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH-HHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPK-LLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~-LL~~Sgig  329 (385)
                      .+...+++.|++|++++.|++|..++ +++++++.+.. +|+ .++.++ .||+|+|...+.. +|..+|+.
T Consensus       260 ~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~v~~~~v~~~~G~-~~i~aD-~Vv~A~G~~p~~~~~l~~~gl~  328 (523)
T 1mo9_A          260 YVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGE-MRIETD-FVFLGLGEQPRSAELAKILGLD  328 (523)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEE-EEEECS-CEEECCCCEECCHHHHHHHTCC
T ss_pred             HHHHHHHhCCcEEEECCEEEEEEEcC-CCceEEEEEEECCCc-EEEEcC-EEEECcCCccCCccCHHHcCCc
Confidence            34445566799999999999998753 45665555543 343 368996 7999999877766 67777753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.84  E-value=1.1e-05  Score=77.73  Aligned_cols=37  Identities=32%  Similarity=0.544  Sum_probs=34.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ++||+|||+|++|+++|++|+++ |.+|+|+|+.+...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcC
Confidence            58999999999999999999998 99999999987664

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.84  E-value=7.9e-06  Score=81.20  Aligned_cols=60  Identities=8%  Similarity=0.081  Sum_probs=43.2

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~--g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      +...+++.|++|++++.|++|..++ ++++ .|.+.++  ++..++.++ .||+|+|.-.+..+|
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~-~v~~~~~~~~~~~~~~~D-~vi~a~G~~p~~~~l  294 (483)
T 3dgh_A          233 VAASMEERGIPFLRKTVPLSVEKQD-DGKL-LVKYKNVETGEESEDVYD-TVLWAIGRKGLVDDL  294 (483)
T ss_dssp             HHHHHHHTTCCEEETEEEEEEEECT-TSCE-EEEEEETTTCCEEEEEES-EEEECSCEEECCGGG
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcC-CCcE-EEEEecCCCCceeEEEcC-EEEECcccccCcCcC
Confidence            4445567899999999999998753 3333 4666653  456679996 899999976665554

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.83  E-value=8.7e-06  Score=81.16  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +|||+|||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            59999999999999999999998 99999999975

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.83  E-value=9e-06  Score=80.07  Aligned_cols=36  Identities=36%  Similarity=0.599  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+||+||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   37 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCCC
Confidence            3579999999999999999999998 99999999974

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.83  E-value=8.3e-06  Score=82.47  Aligned_cols=36  Identities=31%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++||+|||+|++|+++|..|+++ |.+|+||||.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            468999999999999999999998 999999999753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.82  E-value=7.8e-06  Score=81.09  Aligned_cols=37  Identities=27%  Similarity=0.623  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...|||||||+|++|+++|.+|++. |.+|+|+|++..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~~~   54 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKL   54 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            4579999999999999999999998 999999998743

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.82  E-value=9.7e-06  Score=77.07  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .++||+|||+|++|+++|.+|++. |. +|+|||+.+
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            368999999999999999999998 99 999999986

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.81  E-value=9.7e-06  Score=80.17  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+|||||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            579999999999999999999998 99999999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=9.6e-06  Score=80.56  Aligned_cols=36  Identities=36%  Similarity=0.682  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+|||||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            4579999999999999999999998 99999999974

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.80  E-value=1.2e-05  Score=81.23  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~   58 (385)
                      ..+||||||+|++|+++|..|++   . |.+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQG-TADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTT-SSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC-CCcEEEEeCCCC
Confidence            47899999999999999999999   8 999999999653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.80  E-value=1.2e-05  Score=79.63  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..++||||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~   37 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGT   37 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            4579999999999999999999998 99999999984

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.80  E-value=9.3e-06  Score=80.68  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      |..+|||||||+|++|+++|.+|++. |.+|+|+|+.+..
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~   41 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            44579999999999999999999998 9999999996544

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.80  E-value=8.4e-06  Score=80.85  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..+|||||||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~   40 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCc
Confidence            3579999999999999999999998 9999999996544

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.80  E-value=9.4e-06  Score=80.77  Aligned_cols=66  Identities=15%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      .+...+++.|+++++++.|++|...+ ++.+ .|.+.+  +|+..++.++ .||+|+|-..+..+  |..+|+
T Consensus       230 ~l~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-~v~~~~~~~g~~~~~~~D-~vi~a~G~~p~~~~l~l~~~g~  299 (488)
T 3dgz_A          230 LVTEHMESHGTQFLKGCVPSHIKKLP-TNQL-QVTWEDHASGKEDTGTFD-TVLWAIGRVPETRTLNLEKAGI  299 (488)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEECT-TSCE-EEEEEETTTTEEEEEEES-EEEECSCEEESCGGGTGGGGTC
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcC-CCcE-EEEEEeCCCCeeEEEECC-EEEEcccCCcccCcCCccccCc
Confidence            34445567899999999999998743 3333 355655  3666678996 89999997666655  334444

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.79  E-value=7.8e-06  Score=76.10  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=44.9

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN---GHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~---g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .+++.|+++++++.|++|..+  ++++.+|.+.+.   |+..++.++ .||+|+|.-.++.+|.
T Consensus       193 ~l~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~~~  253 (320)
T 1trb_A          193 KVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIFE  253 (320)
T ss_dssp             HHHTSSEEEECSCEEEEEEEC--SSSEEEEEEECCTTCCCCEEEECS-EEEECSCEEESCGGGT
T ss_pred             hcccCCeEEEcCceeEEEEcC--CCceEEEEEEeccCCCceEEEEcC-EEEEEeCCCCChHHhc
Confidence            445689999999999999876  567888988762   555679996 8999999765555543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.79  E-value=1.1e-05  Score=80.95  Aligned_cols=36  Identities=31%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+|||||||+|++|+++|.+|++. |.+|+|+|+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence            4579999999999999999999998 99999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.78  E-value=1.1e-05  Score=81.16  Aligned_cols=34  Identities=29%  Similarity=0.626  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +||+||||+|++|.++|.++|+. |++|+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            49999999999999999999998 99999999754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.77  E-value=7.6e-06  Score=81.84  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             cccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~   58 (385)
                      .+||||||+|++|+++|..|++   + |.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~-G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDD-RIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGG-GSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCC-CCEEEEEecCCC
Confidence            4799999999999999999999   8 999999999753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.77  E-value=1.7e-05  Score=78.03  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~~~   59 (385)
                      ...+||+|||+|++|+++|..|++. |.  +|+|+|+.+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSP   43 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCC
Confidence            3468999999999999999999998 99  99999998654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.77  E-value=1.3e-05  Score=79.24  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             hhhhhc-cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        260 YLKPII-DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       260 ~l~~~~-~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      .+...+ ++.|++|++++.|++|..+  ++. ..|.+.+ +|+..++.++ .||+|+|.-.+..+  |...|+
T Consensus       220 ~l~~~l~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~l~l~~~gl  288 (468)
T 2qae_A          220 ALVGALAKNEKMKFMTSTKVVGGTNN--GDS-VSLEVEGKNGKRETVTCE-ALLVSVGRRPFTGGLGLDKINV  288 (468)
T ss_dssp             HHHHHHHHHTCCEEECSCEEEEEEEC--SSS-EEEEEECC---EEEEEES-EEEECSCEEECCTTSCHHHHTC
T ss_pred             HHHHHHhhcCCcEEEeCCEEEEEEEc--CCe-EEEEEEcCCCceEEEECC-EEEECCCcccCCCCCCchhcCC
Confidence            344455 6689999999999999876  333 2345442 3444578996 89999997766666  555565

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.74  E-value=1.3e-05  Score=74.35  Aligned_cols=60  Identities=12%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      ..++.|+++++++.|++|..+  ++++.+|.+.+  +|+..++.++ .||+|+|...+..+|..+
T Consensus       188 l~~~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~  249 (311)
T 2q0l_A          188 AKNNDKIEFLTPYVVEEIKGD--ASGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLKQE  249 (311)
T ss_dssp             HHTCTTEEEETTEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGBCT
T ss_pred             HhhCCCeEEEeCCEEEEEECC--CCcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhhcc
Confidence            334579999999999999876  46777888885  5766689996 899999976665555443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.73  E-value=1.9e-05  Score=79.73  Aligned_cols=39  Identities=33%  Similarity=0.481  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...++||||||+|++|+++|.+|+++ |.+|+|+|+++..
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~   51 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   51 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            45579999999999999999999998 9999999998654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.73  E-value=0.00022  Score=69.63  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .++....++.|+++++++.|+++.-    ++   +.+.+ +|...++.++ .||+++|. ..+.++..++.
T Consensus       204 ~~l~~~l~~~GV~~~~~~~v~~v~~----~~---~~~~~~~g~~~~i~~d-~vi~~~G~-~~~~~~~~~~~  265 (430)
T 3hyw_A          204 RLVEDLFAERNIDWIANVAVKAIEP----DK---VIYEDLNGNTHEVPAK-FTMFMPSF-QGPEVVASAGD  265 (430)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEECS----SE---EEEECTTSCEEEEECS-EEEEECEE-ECCHHHHTTCT
T ss_pred             HHHHHHHHhCCeEEEeCceEEEEeC----Cc---eEEEeeCCCceEeecc-eEEEeccC-CCchHHHhccc
Confidence            3455556678999999999999842    22   44443 3556689996 89999995 44567777764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.73  E-value=1.7e-05  Score=76.27  Aligned_cols=34  Identities=35%  Similarity=0.554  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..|+|||+|++|+++|..|+++ |++|+|+||.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            3699999999999999999998 999999998653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.73  E-value=1.6e-05  Score=78.23  Aligned_cols=36  Identities=36%  Similarity=0.604  Sum_probs=33.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +|||||||+|++|+++|.+|++. |.+|+|+|+.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            48999999999999999999998 9999999998644

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.72  E-value=2e-05  Score=78.46  Aligned_cols=38  Identities=32%  Similarity=0.344  Sum_probs=34.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~~~   60 (385)
                      ..+||+|||+|++|+++|++|+++ | .+|+|+|+.+...
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCC
Confidence            468999999999999999999998 8 7999999988664

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.72  E-value=1.6e-05  Score=73.69  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=43.9

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      ..|+++++++.|++|..+  ++++.+|++.+  +|+..++.++ .||+|+|...+..+|.
T Consensus       192 ~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  248 (310)
T 1fl2_A          192 LKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWLE  248 (310)
T ss_dssp             CTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             CCCeEEecCCceEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHHh
Confidence            369999999999999865  56888999886  3666789996 8999999766555553

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.72  E-value=1.4e-05  Score=78.92  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      +...+++.|+++++++.|++|..+  ++.+ .|.+..+|+..++.++ .||+|+|.-.+..+  |..+|+
T Consensus       218 l~~~l~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~~~~D-~vv~a~G~~p~~~~l~~~~~gl  283 (464)
T 2a8x_A          218 IEKQFKKLGVTILTATKVESIADG--GSQV-TVTVTKDGVAQELKAE-KVLQAIGFAPNVEGYGLDKAGV  283 (464)
T ss_dssp             HHHHHHHHTCEEECSCEEEEEEEC--SSCE-EEEEESSSCEEEEEES-EEEECSCEEECCSSSCHHHHTC
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEc--CCeE-EEEEEcCCceEEEEcC-EEEECCCCCccCCCCCchhcCC
Confidence            444455679999999999999866  3332 3444434555578996 89999997666655  555554

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.71  E-value=1.2e-05  Score=75.60  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      ..++.|+++++++.|++|..+   +++.+|.+.+  +|+..++.++ .||+|+|.-.+..+|
T Consensus       200 ~~~~~gV~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  257 (335)
T 2a87_A          200 ARNNDKIRFLTNHTVVAVDGD---TTVTGLRVRDTNTGAETTLPVT-GVFVAIGHEPRSGLV  257 (335)
T ss_dssp             HHHCTTEEEECSEEEEEEECS---SSCCEEEEEEETTSCCEEECCS-CEEECSCEEECCTTT
T ss_pred             HhccCCcEEEeCceeEEEecC---CcEeEEEEEEcCCCceEEeecC-EEEEccCCccChhHh
Confidence            335679999999999999755   2456677764  4555678996 799999976555554

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.71  E-value=1.8e-05  Score=78.75  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ....+||+|||+|++|+++|+.|+++ |.+|+|||+.+...
T Consensus        30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~g   69 (498)
T 2iid_A           30 TSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPG   69 (498)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSB
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCC
Confidence            34578999999999999999999998 99999999987654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.71  E-value=1.7e-05  Score=79.64  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhc------------CCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSE------------VPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~------------~~G~~VlvLE~G~   57 (385)
                      ..+||||||+|++|+++|..|++            + |.+|+|||+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~-G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP-KLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC-SCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC-CCeEEEEeCCC
Confidence            46899999999999999999999            7 99999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.70  E-value=1.8e-05  Score=78.40  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +.+|||||||+|++|+++|.+|++. |.+|+|+|+.+..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCc
Confidence            3469999999999999999999998 9999999998654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.70  E-value=1.9e-05  Score=78.88  Aligned_cols=34  Identities=38%  Similarity=0.658  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +|||||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            58999999999999999999998 99999999985

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.68  E-value=1.9e-05  Score=78.06  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=34.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+|||+|||+|++|+++|.+|++. |.+|+|+|+.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            469999999999999999999998 9999999998644

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.67  E-value=2e-05  Score=75.72  Aligned_cols=36  Identities=33%  Similarity=0.740  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .||||||+|++|+++|..|+++ +|.+|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999984 59999999998654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=2e-05  Score=77.56  Aligned_cols=34  Identities=41%  Similarity=0.635  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .+|||||||+|++|+++|.+|++. |.+|+|+|+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            368999999999999999999998 9999999997

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.67  E-value=9.2e-05  Score=73.91  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=40.6

Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCCCC-----eEEEEEEEe--CCeEEEEEeCcEEEEcCCC
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISK-----QAKGVELVK--NGHKRSVFARKEVIVSSGA  316 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~-----~v~GV~~~~--~g~~~~i~a~k~VVlAaGa  316 (385)
                      ..|+...+++-+..|..+++|+++..++.++     ..--|++.+  .|+..++.| +.||+|+|.
T Consensus       148 ~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~a-r~vVlatG~  212 (501)
T 4b63_A          148 EDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRT-RKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEE-EEEEECCCC
T ss_pred             HHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEe-CEEEECcCC
Confidence            3466666666667799999999999764322     133455554  366778899 589999994

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.66  E-value=1.6e-05  Score=74.41  Aligned_cols=60  Identities=20%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      ...++.|+++++++.|++|..++++.++.+|.+.+  +|+..++.++ .||+|+|.-.+..+|
T Consensus       203 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          203 RALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGHEPATKFL  264 (333)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             HHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecC-EEEEEeCCccchHHh
Confidence            34456899999999999998762112788888885  4666689996 899999976666554

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.65  E-value=2.4e-05  Score=74.87  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +||+|||+|.+|+.+|..||++ |.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            6999999999999999999998 999999998763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.63  E-value=2.3e-05  Score=78.12  Aligned_cols=32  Identities=28%  Similarity=0.585  Sum_probs=30.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhc-CCCceEEEEe
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIE   54 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE   54 (385)
                      .+|||||||+|++|+++|.+|++ . |++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc-CCEEEEEe
Confidence            46999999999999999999999 9 99999999

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.63  E-value=3.6e-05  Score=78.55  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=38.4

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .++.+|||+|||+|..|+++|..|++. |++||+|||.+++..
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccC
Confidence            456789999999999999999999998 999999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.62  E-value=2e-05  Score=78.60  Aligned_cols=35  Identities=20%  Similarity=0.525  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhc-CCCceEEEEec
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEA   55 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~   55 (385)
                      |..+|||||||+|++|+++|.+|++ . |++|+|+|+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhc-CCeEEEEec
Confidence            4457999999999999999999999 9 999999994

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.61  E-value=2.6e-05  Score=80.62  Aligned_cols=34  Identities=41%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHhHhhc-----CCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSE-----VPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~-----~~G~~VlvLE~G~   57 (385)
                      ++||+|||+|++|+++|..|++     . |.+|+||||.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~   46 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCC
Confidence            6899999999999999999999     8 99999999875

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.60  E-value=2.9e-05  Score=76.72  Aligned_cols=38  Identities=39%  Similarity=0.518  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~~   60 (385)
                      ..+||+|||+|++|+++|+.|+++ |. +|+|+|+++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCC
Confidence            468999999999999999999998 98 899999987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.58  E-value=3.4e-05  Score=76.27  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=45.3

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN--GHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~--g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      .+...+++.|+++++++.|++|..+  ++.+ .|.+.++  |+..++.++ .||+|+|.-.+..+  |..+|+
T Consensus       215 ~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~l~l~~~g~  283 (464)
T 2eq6_A          215 LLRRALEKEGIRVRTKTKAVGYEKK--KDGL-HVRLEPAEGGEGEEVVVD-KVLVAVGRKPRTEGLGLEKAGV  283 (464)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEE--TTEE-EEEEEETTCCSCEEEEES-EEEECSCEEESCTTSSHHHHTC
T ss_pred             HHHHHHHhcCCEEEcCCEEEEEEEe--CCEE-EEEEeecCCCceeEEEcC-EEEECCCcccCCCCCChhhcCc
Confidence            3444455679999999999999876  3443 3555534  655578996 89999997666554  455554

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.58  E-value=3.6e-05  Score=79.92  Aligned_cols=40  Identities=30%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ....+||+|||+|++|+++|+.|+++ |++|+|+|+++...
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~G  427 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDLG  427 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSC
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            45578999999999999999999998 99999999987543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.56  E-value=3e-05  Score=76.51  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..||+||||+|++|+++|.+|++. |.+|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEccCC
Confidence            468999999999999999999998 99999999943

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.55  E-value=4.2e-05  Score=77.19  Aligned_cols=38  Identities=37%  Similarity=0.527  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+||||||+|++|+.+|.+|++. |.+|+|||+++..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~~   44 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGEDV   44 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            3568999999999999999999997 9999999998654

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.54  E-value=3.8e-05  Score=80.58  Aligned_cols=39  Identities=33%  Similarity=0.458  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+||+|||+|++|+++|..|+++ |++|+|||+.+...
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~g  372 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIG  372 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccee
Confidence            3468999999999999999999998 99999999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.54  E-value=3.8e-05  Score=75.74  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+||+|||||++|+++|..|++. |++|+|+|+.+..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            3468999999999999999999998 9999999998765

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.50  E-value=4.5e-05  Score=77.83  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ...|||+|||+|++|+++|.+|++. |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC-CCeEEEEecc
Confidence            4579999999999999999999998 9999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.49  E-value=5.8e-05  Score=72.51  Aligned_cols=63  Identities=10%  Similarity=0.135  Sum_probs=45.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+...+++.|+++++++.|++|..+  ++. ..|++. +|+  ++.++ .||+|+|...+..+|..+|+.
T Consensus       192 ~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~-~g~--~i~~d-~vv~a~G~~p~~~l~~~~g~~  254 (384)
T 2v3a_A          192 AVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLS-DGE--VIPCD-LVVSAVGLRPRTELAFAAGLA  254 (384)
T ss_dssp             HHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEET-TSC--EEEES-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEEC-CCC--EEECC-EEEECcCCCcCHHHHHHCCCC
Confidence            3444556789999999999999876  333 244443 343  68896 799999987776777777764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.47  E-value=6.5e-05  Score=73.46  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +...+++.|+++++++.|++|..++.++++.+|.+.+ |+  ++.++ .||+|+|...+..++..+|+.
T Consensus       197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~-G~--~i~~D-~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED-GT--RLPAD-LVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT-SC--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCC-CC--EEEcC-EEEECCCCCcCcchhhccCCC
Confidence            4444556799999999999998620146777777654 32  68896 899999977676788777764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.44  E-value=6e-05  Score=75.65  Aligned_cols=54  Identities=22%  Similarity=0.330  Sum_probs=43.7

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .|+++++++.|++|.-+  ++++++|.+.+  +|+..++.++ .||+|+|...+..+|.
T Consensus       404 ~gV~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~  459 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHSVALA-GIFVQIGLLPNTHWLE  459 (521)
T ss_dssp             TTEEEECSEEEEEEEEC--SSSEEEEEEEETTTCCEEEEECS-EEEECCCEEESCGGGT
T ss_pred             CCcEEEeCCEEEEEEcC--CCcEEEEEEEeCCCCceEEEEcC-EEEECcCCCCCchHHh
Confidence            69999999999999866  57888999986  4666789996 8999999765555543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.42  E-value=5.9e-05  Score=75.22  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcC-C-CceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV-P-SWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~-~-G~~VlvLE~G~   57 (385)
                      +|||||||+|++|+++|.+|++. + |.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999985 3 89999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.39  E-value=0.00014  Score=75.14  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+||+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            4468999999999999999999998 9999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.38  E-value=0.0001  Score=70.46  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .|++|||+|++|+++|.+|++. | +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCC
Confidence            5999999999999999999998 8 99999998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.37  E-value=0.00012  Score=75.64  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+||+|||+|++|+++|+.|+++ |++|+|+|+.+...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG  143 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSB
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            4468999999999999999999998 99999999987653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.35  E-value=9.1e-05  Score=73.24  Aligned_cols=63  Identities=16%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+...+++.|++|++++.|++|..+  +++++ |.+.+ |+  ++.++ .||+|+|...+..|+..+|+.
T Consensus       207 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~-v~~~~-g~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  269 (472)
T 3iwa_A          207 MLRHDLEKNDVVVHTGEKVVRLEGE--NGKVA-RVITD-KR--TLDAD-LVILAAGVSPNTQLARDAGLE  269 (472)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEES--SSBEE-EEEES-SC--EEECS-EEEECSCEEECCHHHHHHTCC
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEcc--CCeEE-EEEeC-CC--EEEcC-EEEECCCCCcCHHHHHhCCcc
Confidence            3444556789999999999999875  45655 55544 43  68896 899999987776777777753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.34  E-value=0.00012  Score=73.01  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+....++.|++|++++.|++|..+  ++++ .|++.+ |+  ++.++ .||+|+|...+..++..+|+.
T Consensus       231 ~~~~~l~~~GV~v~~~~~V~~i~~~--~~~~-~v~l~d-G~--~i~aD-~Vv~a~G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          231 WTMEKVRREGVKVMPNAIVQSVGVS--SGKL-LIKLKD-GR--KVETD-HIVAAVGLEPNVELAKTGGLE  293 (493)
T ss_dssp             HHHHHHHTTTCEEECSCCEEEEEEE--TTEE-EEEETT-SC--EEEES-EEEECCCEEECCTTHHHHTCC
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEec--CCeE-EEEECC-CC--EEECC-EEEECCCCCccHHHHHHcCCc
Confidence            3444556789999999999999865  4444 455443 43  68896 899999987777788777764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.33  E-value=0.0013  Score=63.03  Aligned_cols=34  Identities=24%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-+++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  178 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCE  178 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            34799999999999999999998 99999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.32  E-value=0.00011  Score=72.14  Aligned_cols=37  Identities=30%  Similarity=0.568  Sum_probs=33.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      .+||||||+|++|+++|..|++. +|.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999985 47899999998854

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.31  E-value=0.00014  Score=75.92  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+||+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            4468999999999999999999998 9999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.31  E-value=0.00011  Score=72.35  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .+...+++.|++|++++.|++|..+  ++++.+|..  +|+  ++.++ .||+|+|.-.+..+|.
T Consensus       196 ~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~--~g~--~i~~D-~vv~a~G~~p~~~ll~  253 (452)
T 2cdu_A          196 ILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL--DGK--EIKSD-IAILCIGFRPNTELLK  253 (452)
T ss_dssp             HHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET--TSC--EEEES-EEEECCCEEECCGGGT
T ss_pred             HHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe--CCC--EEECC-EEEECcCCCCCHHHHH
Confidence            3444556789999999999999865  466666654  343  68896 8999999776666543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.31  E-value=0.00011  Score=72.12  Aligned_cols=56  Identities=9%  Similarity=0.033  Sum_probs=41.0

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      .+...+++.|++|++++.|++|..+  ++++ .|.+ +++   ++.++ .||+|+|...+..+|
T Consensus       194 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~-~~g---~i~aD-~Vv~A~G~~p~~~~l  249 (452)
T 3oc4_A          194 EVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLET-SEQ---EISCD-SGIFALNLHPQLAYL  249 (452)
T ss_dssp             HHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEE-SSC---EEEES-EEEECSCCBCCCSSC
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEE-CCC---EEEeC-EEEECcCCCCChHHH
Confidence            3444566789999999999999865  4555 5554 333   68896 899999976665544

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.30  E-value=0.00072  Score=62.71  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-BSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCC
Confidence            3699999999999999999998 99999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.30  E-value=0.00011  Score=73.00  Aligned_cols=36  Identities=11%  Similarity=0.228  Sum_probs=33.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCC---ceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPS---WKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G---~~VlvLE~G~~~   59 (385)
                      ++||||||+|++|+++|.+|++. |   .+|+|+|+.+..
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTN-YGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-HGGGSEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-CCCCCeEEEEECCCCC
Confidence            58999999999999999999997 7   999999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.30  E-value=0.00083  Score=65.55  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.++|||+|..|+-+|..|++. |.+|+++|+.+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~  182 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAA  182 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCC
Confidence            34799999999999999999998 99999999865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.30  E-value=0.001  Score=65.48  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCC
Confidence            3799999999999999999998 99999999875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.29  E-value=0.00011  Score=71.03  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             cEEEECCCchHHHHHhHhhc---CCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~~   59 (385)
                      ||||||+|++|+++|..|++   . |.+|+|+|+.+..
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~~   39 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRFS   39 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCCc
Confidence            79999999999999999999   7 9999999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.27  E-value=0.00019  Score=75.97  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...+||+|||+|++|+++|+.|+++ |++|+|+|+.+...
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCC
Confidence            4468999999999999999999998 99999999987653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.24  E-value=0.0022  Score=64.17  Aligned_cols=33  Identities=6%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~  247 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTE  247 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence            4789999999999999999998 99999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.24  E-value=0.00014  Score=78.20  Aligned_cols=61  Identities=18%  Similarity=0.121  Sum_probs=47.0

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe------CCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK------NGHKRSVFARKEVIVSSGAFNSPKLLMLSG  327 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~------~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sg  327 (385)
                      +++.|++|++++.|++|.-++ ++++.+|.+.+      +|+..++.++ .||+|+|...+..++...+
T Consensus       326 l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~~~~~~~~~~~G~~~~i~~D-~Vv~a~G~~P~~~l~~~~~  392 (965)
T 2gag_A          326 AVADGVQVISGSVVVDTEADE-NGELSAIVVAELDEARELGGTQRFEAD-VLAVAGGFNPVVHLHSQRQ  392 (965)
T ss_dssp             HHHTTCCEEETEEEEEEEECT-TSCEEEEEEEEECTTCCEEEEEEEECS-EEEEECCEEECCHHHHHTT
T ss_pred             HHhCCeEEEeCCEeEEEeccC-CCCEEEEEEEeccccCCCCceEEEEcC-EEEECCCcCcChHHHHhCC
Confidence            345799999999999998631 35788888876      3555689996 8999999777777776654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.00012  Score=72.86  Aligned_cols=59  Identities=10%  Similarity=0.110  Sum_probs=43.8

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+++.|++|++++.|++|.-+   +++.+|...+ |  .++.++ .||+|+|...+..|+..+|+.
T Consensus       266 ~l~~~GV~v~~~~~v~~i~~~---~~v~~v~~~~-g--~~i~aD-~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          266 ELERWGIDYVHIPNVKRVEGN---EKVERVIDMN-N--HEYKVD-ALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHTCEEEECSSEEEEECS---SSCCEEEETT-C--CEEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHhCCcEEEeCCeeEEEecC---CceEEEEeCC-C--eEEEeC-EEEECCCcCcCchHHHhcCCC
Confidence            344579999999999999754   3455565433 3  268896 899999987777788888763

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.23  E-value=0.00015  Score=73.66  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +...+++.|++|++++.|++|..+  ++   +|.+.+ |+  ++.++ .||+|+|...+..+|..+|+.
T Consensus       234 l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~-g~--~i~~D-~Vi~a~G~~p~~~~l~~~g~~  293 (588)
T 3ics_A          234 VHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKS-GS--VIQTD-MLILAIGVQPESSLAKGAGLA  293 (588)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETT-SC--EEECS-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHHHHHHcCCEEEECCeEEEEecC--CC---EEEECC-CC--EEEcC-EEEEccCCCCChHHHHhcCce
Confidence            444556789999999999999765  33   354443 43  68896 899999987777788777764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.22  E-value=0.00018  Score=70.32  Aligned_cols=36  Identities=36%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             cccEEEECCCchHHHHHhHhhc---CCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSE---VPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~---~~G~~VlvLE~G~~~   59 (385)
                      ..||||||+|++|+++|..|++   . |.+|+|+|+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCCC
Confidence            3699999999999999999999   6 9999999998754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.21  E-value=0.00017  Score=69.98  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      .+...+++.|++|++++.|++|. +  +    +|++.+ |+  ++.++ .||+|+|.-.+..+|..+|+.
T Consensus       192 ~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~-g~--~i~~D-~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          192 FVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDD-GT--RIAAD-MVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETT-SC--EEECS-EEEECSCEEECCHHHHHHTCC
T ss_pred             HHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECC-CC--EEEcC-EEEECcCCCccHHHHHhCCCC
Confidence            34445566899999999999998 4  3    455543 43  68896 899999987776788877764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.18  E-value=0.002  Score=59.55  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  178 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD  178 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCC
Confidence            3699999999999999999998 99999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.16  E-value=0.0002  Score=70.30  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      +||||||+|++|+++|.+|++. +|.+|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            4899999999999999999984 48999999998754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.16  E-value=0.0025  Score=58.63  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  177 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  177 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-BSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCc
Confidence            699999999999999999998 99999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.15  E-value=0.00025  Score=70.29  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=43.2

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      +...+++.|++|++++.|++|..+   +++..|..  ++.  ++.++ .||+|+|...+..+|..+|+
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~---~~v~~v~~--~~~--~i~~D-~vi~a~G~~p~~~~l~~~g~  292 (480)
T 3cgb_A          233 IYKEADKHHIEILTNENVKAFKGN---ERVEAVET--DKG--TYKAD-LVLVSVGVKPNTDFLEGTNI  292 (480)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEES---SBEEEEEE--TTE--EEECS-EEEECSCEEESCGGGTTSCC
T ss_pred             HHHHHHHcCcEEEcCCEEEEEEcC---CcEEEEEE--CCC--EEEcC-EEEECcCCCcChHHHHhCCc
Confidence            444556679999999999999754   35555544  232  68896 89999998766667666665

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.13  E-value=0.00074  Score=65.38  Aligned_cols=57  Identities=19%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ++.|++|++++.|++|..+   +++.+|++.++ +  ++.++ .||+|+|...+..++..+|+.
T Consensus       196 ~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg-~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  252 (410)
T 3ef6_A          196 TELGVQVELGTGVVGFSGE---GQLEQVMASDG-R--SFVAD-SALICVGAEPADQLARQAGLA  252 (410)
T ss_dssp             HHHTCEEECSCCEEEEECS---SSCCEEEETTS-C--EEECS-EEEECSCEEECCHHHHHTTCC
T ss_pred             HHCCCEEEeCCEEEEEecc---CcEEEEEECCC-C--EEEcC-EEEEeeCCeecHHHHHhCCCc
Confidence            3468999999999999754   35566776553 3  68896 899999988787888888764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.12  E-value=0.0023  Score=60.36  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~  196 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKN-AASVTLVHRGH  196 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTT-SSEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            699999999999999999998 99999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.10  E-value=0.00028  Score=76.44  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe------------CCeEEEEEeCcEEEEcCCCc-ccHHHHHH-cCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK------------NGHKRSVFARKEVIVSSGAF-NSPKLLML-SGV  328 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~------------~g~~~~i~a~k~VVlAaGa~-~tp~LL~~-Sgi  328 (385)
                      ++.|+++++++.+++|..+  ++++++|++.+            .|+..++.++ .||+|.|.- .+..|+.. +|+
T Consensus       381 ~~~Gv~~~~~~~~~~i~~~--~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD-~Vi~A~G~~~~~~~l~~~~~gl  454 (1025)
T 1gte_A          381 KEEKCEFLPFLSPRKVIVK--GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKAD-VVISAFGSVLRDPKVKEALSPI  454 (1025)
T ss_dssp             HHTTCEEECSEEEEEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECS-EEEECSCEECCCHHHHHHTTTS
T ss_pred             HHcCCEEEeCCCceEEEcc--CCeEEEEEEEEeEEcCCCCcccCCCceEEEECC-EEEECCCCCCCchhhhhcccCc
Confidence            4569999999999999876  67888887752            1334578996 899999974 35666654 454

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.08  E-value=0.002  Score=63.24  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  203 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAG  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            4799999999999999999998 99999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.07  E-value=0.0039  Score=57.33  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  176 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRD  176 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCC
Confidence            4799999999999999999998 99999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.03  E-value=0.00031  Score=69.33  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~~   59 (385)
                      ..+||+|||+|++|+.+|..|++. |  .+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcC
Confidence            357999999999999999999997 7  999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.01  E-value=0.0052  Score=57.10  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~  192 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRD  192 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCC
Confidence            4799999999999999999998 99999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.97  E-value=0.00032  Score=69.06  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhc-C-C----CceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSE-V-P----SWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~-~-~----G~~VlvLE~G~~~   59 (385)
                      ..+||+|||+|++|+.+|..|++ . +    |.+|+|+|+.+..
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            35799999999999999999988 5 2    7999999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.97  E-value=0.0051  Score=57.04  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  185 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRD  185 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence            3699999999999999999998 99999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.96  E-value=0.0029  Score=61.18  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .-.++|||+|..|+-+|..|++. |.+|+++|+++.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTA-GVHVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCc
Confidence            35799999999999999999998 999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.94  E-value=0.00051  Score=66.53  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCce--EEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWK--VLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~--VlvLE~G~~~   59 (385)
                      .||+|||+|++|+++|.+|++. |.+  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~-g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE-GFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc-CcCCeEEEEECCCCC
Confidence            3899999999999999999998 876  9999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.91  E-value=0.003  Score=62.32  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  216 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP  216 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence            3799999999999999999998 99999999864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.88  E-value=0.00035  Score=72.21  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=33.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCC--------ceEEEEecCC-CC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPS--------WKVLLIEAGD-ED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G--------~~VlvLE~G~-~~   59 (385)
                      ..+|+|||+|++|+++|++|+++ |        .+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            57999999999999999999998 8        9999999987 55

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.87  E-value=0.0042  Score=62.11  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|+|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~  388 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  388 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-BSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCc
Confidence            3799999999999999999998 99999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.87  E-value=0.00047  Score=69.56  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~~   60 (385)
                      .||+|||+|++|+++|.+|++. +|.+|+|+|+.+...
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            3899999999999999999985 478999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.83  E-value=0.0062  Score=56.58  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~  185 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRP  185 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCC
Confidence            3799999999999999999998 99999999865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.81  E-value=0.0038  Score=61.29  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  204 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLP  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3799999999999999999998 99999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.80  E-value=0.0048  Score=60.75  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  211 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRL-GADVTAVEFLG  211 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEeccC
Confidence            3699999999999999999998 99999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.78  E-value=0.048  Score=53.18  Aligned_cols=50  Identities=12%  Similarity=0.037  Sum_probs=38.1

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ...|++|++++.|+++..+  ++. ..|.+.+  +|+..++.++ .||+|+|.-.+
T Consensus       327 ~~~~v~i~~~~~v~~v~~~--~~~-~~v~~~~~~~g~~~~~~~D-~Vv~AtG~~p~  378 (463)
T 3s5w_A          327 GIPRHAFRCMTTVERATAT--AQG-IELALRDAGSGELSVETYD-AVILATGYERQ  378 (463)
T ss_dssp             CCCCSEEETTEEEEEEEEE--TTE-EEEEEEETTTCCEEEEEES-EEEECCCEECC
T ss_pred             CCCCeEEEeCCEEEEEEec--CCE-EEEEEEEcCCCCeEEEECC-EEEEeeCCCCC
Confidence            3479999999999999876  333 3455553  4667789996 89999997655

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.75  E-value=0.00094  Score=66.56  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ..++..|||||+|.||+.+|.+|++. +.+|+|||+.++
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCCC
Confidence            34456799999999999999999997 999999999764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.72  E-value=0.0016  Score=64.35  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-+++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  219 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVEL-GKKVRMIERND  219 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCC
Confidence            35799999999999999999998 99999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.71  E-value=0.0046  Score=60.52  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  182 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHE  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            699999999999999999998 99999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.70  E-value=0.00082  Score=64.61  Aligned_cols=62  Identities=10%  Similarity=-0.015  Sum_probs=42.5

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      +....++.++++++++.|..+..+.+..   .|++.+ |+  ++.++ .||++.|. ..+.++..||+.+
T Consensus       208 ~~~~l~~~gi~v~~~~~v~~v~~~~~~~---~v~~~~-g~--~i~~D-~vi~~~g~-~~~~~~~~~gl~~  269 (401)
T 3vrd_B          208 YGFGTENALIEWHPGPDAAVVKTDTEAM---TVETSF-GE--TFKAA-VINLIPPQ-RAGKIAQSASLTN  269 (401)
T ss_dssp             SCTTSTTCSEEEECTTTTCEEEEETTTT---EEEETT-SC--EEECS-EEEECCCE-EECHHHHHTTCCC
T ss_pred             HHHHHHhcCcEEEeCceEEEEEecccce---EEEcCC-Cc--EEEee-EEEEecCc-CCchhHhhccccc
Confidence            3334567899999999999988764222   233333 43  68896 79998884 4456888888753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.70  E-value=0.0072  Score=59.39  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  207 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARL-GAEVTVVEFAP  207 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHh-CCEEEEEecCC
Confidence            3689999999999999999998 99999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.66  E-value=0.001  Score=65.09  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +....++.|+++++++.|+++.-    .+   |.+.+ |+  ++.++ .||+|+|...+..+|..+|+.
T Consensus       194 ~~~~l~~~gV~i~~~~~v~~~~~----~~---v~~~~-g~--~~~~D-~vl~a~G~~Pn~~~~~~~gl~  251 (437)
T 4eqs_A          194 ILDELDKREIPYRLNEEINAING----NE---ITFKS-GK--VEHYD-MIIEGVGTHPNSKFIESSNIK  251 (437)
T ss_dssp             HHHHHHHTTCCEEESCCEEEEET----TE---EEETT-SC--EEECS-EEEECCCEEESCGGGTTSSCC
T ss_pred             HHHHhhccceEEEeccEEEEecC----Ce---eeecC-Ce--EEeee-eEEEEeceecCcHHHHhhhhh
Confidence            44455678999999999998752    22   33433 33  67886 899999977666677777753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0027  Score=62.75  Aligned_cols=58  Identities=16%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH-HHHcCC
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL-LMLSGV  328 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L-L~~Sgi  328 (385)
                      +.|++|++++.|++|..++ ++++..|.+. +|+ .++.++ .||+|+|.-.+..| |..+|+
T Consensus       238 ~~Gv~i~~~~~v~~i~~~~-~~~~~~v~~~-~G~-~~i~~D-~vv~a~G~~p~~~l~l~~~gl  296 (479)
T 2hqm_A          238 KEGINVHKLSKIVKVEKNV-ETDKLKIHMN-DSK-SIDDVD-ELIWTIGRKSHLGMGSENVGI  296 (479)
T ss_dssp             HHTCEEECSCCEEEEEECC--CCCEEEEET-TSC-EEEEES-EEEECSCEEECCCSSGGGGTC
T ss_pred             hCCeEEEeCCEEEEEEEcC-CCcEEEEEEC-CCc-EEEEcC-EEEECCCCCCccccChhhcCc
Confidence            4589999999999998653 2334455554 342 368896 89999997655555 455554

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.64  E-value=0.0075  Score=59.80  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=39.4

Q ss_pred             eEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy10417        270 LHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKL--LMLSGV  328 (385)
Q Consensus       270 ~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~L--L~~Sgi  328 (385)
                      ++|++++.|+++..+  ++++. |.+.+ +|+..++.++ .||+|+|...+..+  |...|+
T Consensus       229 V~i~~~~~v~~i~~~--~~~v~-v~~~~~~G~~~~i~~D-~Vi~a~G~~p~~~~l~l~~~gl  286 (492)
T 3ic9_A          229 FYFDAKARVISTIEK--EDAVE-VIYFDKSGQKTTESFQ-YVLAATGRKANVDKLGLENTSI  286 (492)
T ss_dssp             SEEETTCEEEEEEEC--SSSEE-EEEECTTCCEEEEEES-EEEECSCCEESCSSSCGGGSCC
T ss_pred             cEEEECCEEEEEEEc--CCEEE-EEEEeCCCceEEEECC-EEEEeeCCccCCCCCChhhcCC
Confidence            999999999999876  34443 44442 4655689996 89999997666665  444554

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.60  E-value=0.0016  Score=62.57  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .+...|+|||+|++|+.+|..|+.. +.+|+|+|+.+..
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~-~~~itlie~~~~~   44 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGK-CDDITMINSEKYL   44 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTT-CSCEEEECSSSSC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCC-CCEEEEEECCCCC
Confidence            3466899999999999999999665 9999999998765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.45  E-value=0.014  Score=58.75  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+.+
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  184 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHL-GIKTTLLELAD  184 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCC
Confidence            799999999999999999998 99999999865

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.43  E-value=0.0094  Score=59.10  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHhHhhcC---CCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV---PSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~---~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++.   .|.+|+++++.+
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            699999999999999999872   278899999764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.43  E-value=0.01  Score=58.03  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~  181 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLEN  181 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence            3699999999999999999998 999999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.40  E-value=0.0035  Score=61.58  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  210 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFAS  210 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            3699999999999999999998 99999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.39  E-value=0.013  Score=57.93  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  231 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARL-GAKVTVVEFLD  231 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeccc
Confidence            689999999999999999998 99999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.32  E-value=0.027  Score=55.28  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  213 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMD  213 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence            699999999999999999998 99999999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.22  E-value=0.019  Score=56.69  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~  217 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGI-GLDTTVMMRS  217 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCceEEEEcC
Confidence            599999999999999999998 9999999975

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.17  E-value=0.012  Score=59.66  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  220 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRER-GIEVTLVEMAN  220 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            699999999999999999998 99999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.13  E-value=0.016  Score=53.43  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=44.1

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      +.|+++++++.|++|..+  ++ +.+|.+.+  +++..++.++ .||+|+|...+..+|..+|+.
T Consensus       201 ~~gv~~~~~~~v~~i~~~--~~-~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~~~~  261 (332)
T 3lzw_A          201 ASKVNVLTPFVPAELIGE--DK-IEQLVLEEVKGDRKEILEID-DLIVNYGFVSSLGPIKNWGLD  261 (332)
T ss_dssp             HSSCEEETTEEEEEEECS--SS-CCEEEEEETTSCCEEEEECS-EEEECCCEECCCGGGGGSSCC
T ss_pred             cCCeEEEeCceeeEEecC--Cc-eEEEEEEecCCCceEEEECC-EEEEeeccCCCchHHhhcCcc
Confidence            358999999999999765  33 56787776  3556678996 899999977666676666654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.13  E-value=0.011  Score=58.50  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            3789999999999999999998 99999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.06  E-value=0.012  Score=57.72  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~  203 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGL-GVKTTLIYRGK  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3689999999999999999998 99999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.00  E-value=0.024  Score=55.88  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|||+|..|+-+|..|++. |.+|+++++.
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~  219 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGL-GYEPTVMVRS  219 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCEEEEEeCC
Confidence            589999999999999999998 9999999974

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.00  E-value=0.009  Score=59.26  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  215 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQD  215 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3689999999999999999998 99999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.78  E-value=0.017  Score=57.34  Aligned_cols=57  Identities=19%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH-H-HHHcCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK-L-LMLSGV  328 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~-L-L~~Sgi  328 (385)
                      ++.|++|++++.|++|..++  +....|++. +|+  ++.++ .||+|+|...+.. | |..+|+
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~-~G~--~i~~D-~vv~a~G~~p~~~~L~l~~~gl  304 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNT--DGSKHVTFE-SGK--TLDVD-VVMMAIGRIPRTNDLQLGNVGV  304 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECT--TSCEEEEET-TSC--EEEES-EEEECSCEEECCGGGTGGGTTC
T ss_pred             HhCCCEEEeCCEEEEEEEcC--CceEEEEEC-CCc--EEEcC-EEEECCCCcccccccchhhcCc
Confidence            34689999999999998763  223345554 343  68896 8999999766554 3 344554

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.63  E-value=0.018  Score=57.05  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=38.9

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH-H-HHHcCC
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPK-L-LMLSGV  328 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~-L-L~~Sgi  328 (385)
                      ++.|++|++++.|++|..++  +....|++. +|+  ++.++ .||+|+|...+.. | |..+|+
T Consensus       242 ~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~-~G~--~i~~D-~vv~a~G~~p~~~~L~l~~~gl  300 (490)
T 1fec_A          242 RANGINVRTHENPAKVTKNA--DGTRHVVFE-SGA--EADYD-VVMLAIGRVPRSQTLQLEKAGV  300 (490)
T ss_dssp             HHTTEEEEETCCEEEEEECT--TSCEEEEET-TSC--EEEES-EEEECSCEEESCTTSCGGGGTC
T ss_pred             HhCCCEEEeCCEEEEEEEcC--CCEEEEEEC-CCc--EEEcC-EEEEccCCCcCccccCchhcCc
Confidence            45689999999999998763  222345543 343  68896 8999999765554 3 445554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.25  E-value=0.093  Score=56.77  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .|+|||+|..|+=+|..|++. |. +|+|+++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecC
Confidence            799999999999999999998 86 899999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.12  E-value=0.061  Score=57.79  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~-G~~Vtvv~~~~  317 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAAT-GGVVAVIDARS  317 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGG-TCCSEEEESCS
T ss_pred             eEEEEcCCHHHHHHHHHHHHc-CCcEEEEECCC
Confidence            699999999999999999998 99999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.96  E-value=0.018  Score=56.18  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ...+++|||+|.+|+-+|..|++. |.+|+|+|+++..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCccc
Confidence            356899999999999999999998 9999999998754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=94.73  E-value=0.087  Score=54.38  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             ccEEEEC--CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVG--AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVG--sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|+|||  +|..|+-+|..|++. |.+|.++++.+
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~  558 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGA  558 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhC-CCeeEEEeccc
Confidence            3599999  999999999999998 99999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.66  E-value=0.027  Score=51.73  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++...
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDELR  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEecccccC
Confidence            699999999999999999998 99999999987653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.65  E-value=0.023  Score=45.94  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||.|..|..+|..|.+. |.+|+++|+.+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~   40 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLAS-DIPLVVIETSR   40 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            589999999999999999998 99999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.58  E-value=0.026  Score=46.39  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|..+|..|.+. |.+|+++++.+
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            4699999999999999999998 99999999854

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.58  E-value=0.024  Score=45.64  Aligned_cols=32  Identities=22%  Similarity=0.521  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|+|+|..|..+|..|+++ |.+|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999998 99999999853

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.52  E-value=0.028  Score=44.75  Aligned_cols=32  Identities=34%  Similarity=0.491  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..++|||+|..|..+|..|++. |.+|+++|+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            3689999999999999999998 9999999974

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.28  E-value=0.024  Score=54.31  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS-GTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCcc
Confidence            3799999999999999999998 9999999998865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.05  E-value=0.036  Score=45.39  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|+|+|..|..+|..|.+. |.+|+++|+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            589999999999999999998 9999999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.81  E-value=0.05  Score=49.74  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=32.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccc
Confidence            4699999999999999999998 9999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.80  E-value=0.034  Score=54.40  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.++|||+|.+|+-+|..|++. |.+|+|+|+++...
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  207 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERIL  207 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCccc
Confidence            3799999999999999999998 99999999998653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=93.78  E-value=0.043  Score=53.53  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|.+|+-+|..|++. |.+|+|+|+++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCCcc
Confidence            3699999999999999999998 9999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.72  E-value=0.04  Score=52.27  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCee
Confidence            4799999999999999999998 9999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.61  E-value=0.054  Score=41.63  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      ..++|+|+|..|..+|..|.+. | .+|.++++..
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCH
Confidence            3589999999999999999998 8 9999999853

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.14  E-value=0.064  Score=52.31  Aligned_cols=34  Identities=26%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++..
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  202 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAP  202 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCCch
Confidence            799999999999999999998 9999999998754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.97  E-value=0.057  Score=43.08  Aligned_cols=31  Identities=23%  Similarity=0.475  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|+|+|..|..+|..|.+. |.+|+++++.
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            489999999999999999998 9999999975

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=92.49  E-value=0.094  Score=51.69  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEcccch
Confidence            3699999999999999999998 9999999998765

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=92.32  E-value=0.097  Score=51.22  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSF-GSEVTVVALEDRL  201 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            699999999999999999998 9999999998754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.30  E-value=0.086  Score=49.36  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .|+|||+|..|+-+|..|++. |.+|+++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCC
Confidence            699999999999999999998 999999999764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.22  E-value=0.099  Score=48.51  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|+..|..|+++ |.+|.++.|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            3589999999999999999998 99999999975

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.19  E-value=0.1  Score=48.21  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|+..|..|+++ |.+|.++.|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            3589999999999999999998 99999999865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.97  E-value=0.082  Score=45.99  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|..+|..|.++ |.+|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999998 99999999754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=91.88  E-value=0.12  Score=50.14  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERVL  184 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccc
Confidence            799999999999999999998 99999999988653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.78  E-value=0.13  Score=50.79  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  211 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI  211 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             eEEEECChHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            699999999999999999998 9999999998765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.75  E-value=0.1  Score=48.48  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|.-+|..+|.+ |++|+++|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999998 99999999754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=91.73  E-value=0.14  Score=51.26  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.|+|||+|..|+-+|..|++. |.+|+|++|.+.+
T Consensus       179 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQY  213 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCCC
T ss_pred             ceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCCc
Confidence            3699999999999999999998 9999999998763

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=91.70  E-value=0.097  Score=51.45  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.++|||+|..|+-+|..|++. |.+|+|+|+.+...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLM  221 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccc
Confidence            3799999999999999999998 99999999987653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=91.67  E-value=0.13  Score=51.50  Aligned_cols=35  Identities=11%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.|+|||+|..|+-+|..|++. +.+|+|++|.+.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCCc
Confidence            3699999999999999999998 9999999999854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.60  E-value=0.12  Score=50.12  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCce-EEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~~~   59 (385)
                      -.|+|||+|..|+=+|..|++. |.+ |+++++++..
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCCCc
Confidence            3799999999999999999998 888 9999998643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=91.59  E-value=0.11  Score=50.41  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++...
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~ll  183 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDKIN  183 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSCCS
T ss_pred             EEEEECCccchhhhHHHHHhc-CCcceeeeeecccc
Confidence            699999999999999999998 99999999998653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.24  E-value=0.15  Score=49.81  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .|+|||+|..|+=+|..|++. |.+|+++++.+..
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~~  232 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTAP  232 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCCC
Confidence            699999999999999999998 9999999987643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.21  E-value=0.14  Score=47.03  Aligned_cols=32  Identities=19%  Similarity=0.445  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+++ |++|+++++..
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            499999999999999999998 99999999854

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=91.17  E-value=0.29  Score=47.77  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      ..||+|||+|++|+++|.+|+++ +|.+|+|+|+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999984 58999999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=91.14  E-value=0.18  Score=46.60  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++++++..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRF-ARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEcCCcC
Confidence            4799999999999999999998 9999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.00  E-value=0.15  Score=46.37  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+++ |++|++.++..
T Consensus         6 kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=90.87  E-value=0.17  Score=45.71  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|+++ |.+|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            378999999999999999998 99999999865

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=90.77  E-value=0.18  Score=49.30  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..-
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  212 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARL-GSKVTVLARNTLFF  212 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEEECCccC
Confidence            689999999999999999998 99999999987653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.68  E-value=0.15  Score=47.64  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+.|||+|..|+..|..|+++ |.+|.++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            3689999999999999999998 9999999984

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.64  E-value=0.16  Score=49.81  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-+||+|+|-.|..+|..|++. |++|+|+|+.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGE-NNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCST-TEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4599999999999999999998 99999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=90.44  E-value=0.23  Score=45.59  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            4699999999999999999998 9999999998765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.43  E-value=0.22  Score=43.12  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+.|||+|..|..+|..|+++ |.+|.++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-TCEEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            34699999999999999999998 99999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=90.36  E-value=0.16  Score=51.00  Aligned_cols=35  Identities=11%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.|+|||+|..|+-+|..|++. +.+|+|++|.+.+
T Consensus       192 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCCc
Confidence            3699999999999999999998 9999999998854

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=90.35  E-value=0.22  Score=47.75  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCch
Confidence            3689999999999999999998 9999999998865

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.29  E-value=0.2  Score=40.37  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --++|||+|..|..+|..|++. |.+|.+.++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP-QYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence            3589999999999999999997 99999999853

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=90.24  E-value=0.21  Score=47.68  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcc
Confidence            3699999999999999999998 9999999998765

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.02  E-value=0.23  Score=45.78  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|+..|..|+ + |.+|.++.|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            35899999999999999999 8 99999999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.99  E-value=0.17  Score=45.25  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      ...|+|||+|..|+.+|..|+.. |. +|+|+|+...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCCc
Confidence            45799999999999999999998 86 8999998653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=89.98  E-value=0.23  Score=48.53  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++|+++...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRAL  208 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcCC
Confidence            3699999999999999999998 99999999988653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.98  E-value=0.13  Score=47.16  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|...|..|+++ |.+|.++.|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            3589999999999999999998 99999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.91  E-value=0.21  Score=45.66  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|+++ |.+|.++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            589999999999999999998 99999999853

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=89.84  E-value=0.24  Score=48.54  Aligned_cols=34  Identities=32%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKV  222 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCCcc
Confidence            689999999999999999998 9999999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=89.77  E-value=0.22  Score=43.71  Aligned_cols=32  Identities=9%  Similarity=0.152  Sum_probs=29.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      .--|+|||+|..|...|..|.++ |.+|+|++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap   62 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAP   62 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECC
Confidence            34789999999999999999998 999999985

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.66  E-value=0.22  Score=46.56  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|...|..|+++ |.+|.++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999998 99999998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.63  E-value=0.17  Score=45.86  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      --|+|||+|-.|...|..|.+. |.+|+|++..
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~   45 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPD   45 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            4589999999999999999998 9999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=89.59  E-value=0.22  Score=50.40  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASL-GGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999998 9999999997

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=89.56  E-value=0.22  Score=49.03  Aligned_cols=33  Identities=21%  Similarity=0.479  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ...+.|||.|..|+.+|..|+++ |.+|+++++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            45789999999999999999998 9999999974

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.41  E-value=0.25  Score=45.54  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      ..+.|||+|..|..+|..|+++ |.  +|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            4699999999999999999998 98  999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.20  E-value=0.21  Score=41.91  Aligned_cols=34  Identities=24%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||.|..|..+|..|.+..|.+|+++|+.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3699999999999999999872178999999854

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.79  E-value=0.28  Score=45.41  Aligned_cols=31  Identities=35%  Similarity=0.569  Sum_probs=28.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+.|||+|..|...|..|+++ |.+|.++ +.
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            3589999999999999999998 9999999 54

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=88.78  E-value=0.39  Score=43.07  Aligned_cols=33  Identities=12%  Similarity=-0.000  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -.++|||+|..|+-+|..|++. | +|.+++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            4799999999999999999998 8 9999998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=88.70  E-value=0.31  Score=47.27  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|+..|..|+++ |.+|+++++..
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999998 99999999753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.57  E-value=0.28  Score=47.32  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|||||.|-.|..+|..|.+. |.+|+|||+.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            3599999999999999999998 99999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.35  E-value=0.31  Score=45.32  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=30.8

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +..+.|||+|..|...|..|+++ |.+|.+++|..
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            45789999999999999999998 99999998853

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.33  E-value=0.33  Score=47.54  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|..+|..|+++ |++|+++|+..
T Consensus        39 kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999998 99999999754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.18  E-value=0.31  Score=47.51  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|+.+|..|+++ |++|+++++..
T Consensus         4 kI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAEL-GANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CCEEEEEECCH
Confidence            589999999999999999998 99999999854

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.16  E-value=0.41  Score=41.10  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.||| +|..|..+|..|+++ |.+|.+++|..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            378999 999999999999998 99999999853

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=87.99  E-value=0.27  Score=45.50  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      .+.|||+|..|...|..|+++ |.+|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            378999999999999999998 999999998

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=87.96  E-value=0.32  Score=44.16  Aligned_cols=36  Identities=31%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++...
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTFK  190 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCCC
Confidence            4799999999999999999998 99999999987653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=87.76  E-value=0.53  Score=45.75  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF  317 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~  317 (385)
                      ..++..|++|+++++|++|..+.+++++++|.+  +|+  ++.|+ .||+|+|.+
T Consensus       250 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~--~g~--~~~ad-~VV~a~~~~  299 (453)
T 2bcg_G          250 RLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT--KLG--TFKAP-LVIADPTYF  299 (453)
T ss_dssp             HHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE--TTE--EEECS-CEEECGGGC
T ss_pred             HHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE--CCe--EEECC-EEEECCCcc
Confidence            345567999999999999998632367888876  343  58895 799999975

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=87.73  E-value=0.36  Score=44.63  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .-+.|||+|..|..+|..|+.+ |. +|.++|+..
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            4689999999999999999998 88 999999865

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=87.73  E-value=0.35  Score=47.20  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|.|||+|..|..+|..|+++ |++|+++|+...
T Consensus        56 kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            599999999999999999998 999999998653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.62  E-value=0.41  Score=43.84  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --|.|||.|..|...|..|+ + |++|++.|+.+
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            35889999999999999999 8 99999999854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=87.58  E-value=0.46  Score=43.00  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|.++++++..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCC
Confidence            4699999999999999999998 9999999998765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=87.48  E-value=0.47  Score=46.18  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||.|.+|+++|..|.++ |++|.+.|+..
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             EEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            589999999999999999998 99999999865

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=87.44  E-value=0.33  Score=45.70  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|.|||+|..|...|..|+++ |++|.++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            699999999999999999998 99999998753

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.44  E-value=0.5  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...+.|||.|..|...|..|+++ |++|.+.++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            45799999999999999999998 999999998653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=87.37  E-value=0.37  Score=47.83  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+..
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~  243 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSI  243 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            499999999999999999998 99999999863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.23  E-value=0.3  Score=42.78  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.++|+|+|..|..+|..|.+. |. |+++|+.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            34689999999999999999998 99 99999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.22  E-value=0.4  Score=45.21  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+.|||+|.-|.++|..|+++ |.+|.+.++.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK-GQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            35799999999999999999998 99999999853

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.20  E-value=0.42  Score=43.11  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|+|+|.+|..+|..|++. |.+|+|+.|..
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~~  152 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSL-DCAVTITNRTV  152 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            599999999999999999998 89999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.75  E-value=0.46  Score=41.18  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||+|..|...|..|++. |.+|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4699999999999999999998 99999999753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=86.72  E-value=0.47  Score=44.30  Aligned_cols=35  Identities=26%  Similarity=0.518  Sum_probs=30.5

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      ..-|+|||+|..|+.+|..|+.. |. +++++|....
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCEe
Confidence            45799999999999999999998 75 7889997653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=86.70  E-value=0.5  Score=41.84  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+.|||.|..|..+|..|+++ |++|++.++..
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            45689999999999999999998 99999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=86.53  E-value=0.58  Score=45.94  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      ..|.|||.|..|+.+|..||+++|+ +|+++++...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4699999999999999999996589 9999998765

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.50  E-value=0.58  Score=41.73  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ...|+|||+|..|+.+|..|+.. |. +++|+|...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            45799999999999999999998 86 889998764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=86.48  E-value=0.39  Score=47.98  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+=.|.-+++- |.+|+|+++....
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~L  258 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSL-GYDVTVAVRSIVL  258 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCSS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEecccccc
Confidence            589999999999999999998 9999999986543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=86.47  E-value=0.53  Score=45.96  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             CCCeEEEeCcEEEEEEEcCCCC-eEEEEEEEe--------------CCeEEEEEeCcEEEEcCCCcccH
Q psy10417        267 RTNLHVIKNSRVVKIIIDPISK-QAKGVELVK--------------NGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~~~~-~v~GV~~~~--------------~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      ..|++|++++.+++|.-++ ++ ++.+|++.+              +|+..++.++ .||+|+|.-.++
T Consensus       269 ~~gv~~~~~~~~~~i~~~~-~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d-~Vi~a~G~~p~~  335 (460)
T 1cjc_A          269 SRAWGLRFFRSPQQVLPSP-DGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIGYKSRP  335 (460)
T ss_dssp             SEEEEEECSEEEEEEEECT-TSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCCEECCC
T ss_pred             CceEEEECCCChheEEcCC-CCceEEEEEEEEEEEccccCCCcccCCCceEEEEcC-EEEECCCCCCCC
Confidence            4689999999999997652 25 788888763              3445689996 899999966655

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=86.45  E-value=0.47  Score=45.36  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=27.2

Q ss_pred             cEEEECCCchHHHHHhHhhc-CCCceEEEEe
Q psy10417         25 DFIIVGAGVGGCVVAHRLSE-VPSWKVLLIE   54 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~-~~G~~VlvLE   54 (385)
                      .+.|||+|..|..+|..|++ + |.+|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~-G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRD-GVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTST-TEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEEe
Confidence            58999999999999999998 6 99999998

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=86.41  E-value=0.4  Score=45.61  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~   59 (385)
                      .++.-|+|+|+|.+|..+|..|... |. +|.++|+-+..
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~Gli  224 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFGII  224 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTEEC
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCCcc
Confidence            4456899999999999999999998 88 99999997633

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=86.40  E-value=0.53  Score=43.32  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|+-+|..|++. | +|+++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            4799999999999999999998 8 699999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.37  E-value=0.36  Score=46.88  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ...+.|||.|..|+++|..||++ |++|+.+|-.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            35799999999999999999998 9999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.22  E-value=0.5  Score=43.44  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      -|.|||+|..|.++|..|+.+ |.  .|.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            378999999999999999998 88  999999854

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=86.05  E-value=0.55  Score=44.95  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .--|+|||+|.+|..+|..|... |.+|+++|+.+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35799999999999999998888 99999999865

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=85.78  E-value=0.56  Score=42.49  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|+++ |++|++.++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            478999999999999999998 99999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=85.71  E-value=0.45  Score=45.13  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~   59 (385)
                      .++--|+|+|+|.+|..+|..|... |. +|.|+|+-+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~Gli  228 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRKGIL  228 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTEEC
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCcc
Confidence            4566899999999999999999998 87 89999997544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=85.66  E-value=0.55  Score=42.95  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||.|..|...|..|+++ |++|.+.++..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            4689999999999999999998 99999998754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=85.58  E-value=0.3  Score=47.27  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      .+++.|++|+++++|++|..+  ++++++|..  +|+  +++|+ .||+|+|...
T Consensus       243 ~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~~--~g~--~~~ad-~VV~a~~~~~  290 (433)
T 1d5t_A          243 LSAIYGGTYMLNKPVDDIIME--NGKVVGVKS--EGE--VARCK-QLICDPSYVP  290 (433)
T ss_dssp             HHHHHTCCCBCSCCCCEEEEE--TTEEEEEEE--TTE--EEECS-EEEECGGGCG
T ss_pred             HHHHcCCEEECCCEEEEEEEe--CCEEEEEEE--CCe--EEECC-EEEECCCCCc
Confidence            445568999999999999987  678888763  443  68895 7999999753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=85.57  E-value=0.64  Score=42.73  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||.|..|...|..|+++ |++|++.++..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4699999999999999999998 99999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=85.53  E-value=0.64  Score=42.96  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||.|..|...|..|+++ |++|++.++..
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            4699999999999999999998 99999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=85.51  E-value=0.61  Score=45.35  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      ...+.|||.|..|+..|..|+++ |++|+++++...
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            35689999999999999999998 999999998664

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=85.40  E-value=0.62  Score=45.41  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      -.|+|||+|..|+=+|..|.+. |. +|+++++.+.
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCc
Confidence            3699999999999999999998 86 6999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=85.33  E-value=0.58  Score=43.53  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .-|.|||+|..|..+|..|+.. |+ +|.++|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            4699999999999999999998 88 999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=85.24  E-value=0.47  Score=44.25  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .-|.|||+|..|..+|..|+.. |+ +|.++|+..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            4699999999999999999998 87 999999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.23  E-value=0.59  Score=44.09  Aligned_cols=38  Identities=13%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -+.....+.|||.|..|...|..|+++ |++|++.++..
T Consensus        18 ~Mm~~mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           18 LYFQSMQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             hhhcCCEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            344556899999999999999999998 99999999854

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=85.16  E-value=0.28  Score=47.74  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLL  323 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL  323 (385)
                      .+.+.|++|+++++|++|..+  ++.+..|.+ +++   ++.++ .||+|+++....+||
T Consensus       243 ~l~~~g~~i~~~~~V~~i~~~--~~~~~~v~~-~~~---~~~ad-~vv~a~p~~~~~~ll  295 (477)
T 3nks_A          243 HLTSRGVSVLRGQPVCGLSLQ--AEGRWKVSL-RDS---SLEAD-HVISAIPASVLSELL  295 (477)
T ss_dssp             HHHHTTCEEECSCCCCEEEEC--GGGCEEEEC-SSC---EEEES-EEEECSCHHHHHHHS
T ss_pred             HHHhcCCEEEeCCEEEEEEEc--CCceEEEEE-CCe---EEEcC-EEEECCCHHHHHHhc
Confidence            444569999999999999987  333334533 223   58895 799999976655553

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.10  E-value=0.7  Score=41.97  Aligned_cols=33  Identities=18%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..+.|||.|..|...|..|++. |.+|.++++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE-GVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4689999999999999999998 99999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.02  E-value=0.53  Score=46.31  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+++ |++|++.|+..
T Consensus         7 kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999998 99999999754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.00  E-value=0.63  Score=43.98  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --|+|+|+|..|..+|..|... |.+|+++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM-GAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            4689999999999999999998 99999999753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=85.00  E-value=0.66  Score=42.40  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.||| .|..|.++|..|++. |.+|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            599999 999999999999998 99999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=84.98  E-value=0.7  Score=41.40  Aligned_cols=32  Identities=16%  Similarity=0.402  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|+|.|+|..|..++.+|.++ |++|.++.|..
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGG-TCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHC-CCEEEEEEcCh
Confidence            489999999999999999998 99999999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=84.95  E-value=0.66  Score=42.16  Aligned_cols=30  Identities=23%  Similarity=0.431  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -++|+|+|..|..+|..|+++ | +|++..|.
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            589999999999999999998 9 99999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=84.92  E-value=1.1  Score=42.11  Aligned_cols=53  Identities=8%  Similarity=0.058  Sum_probs=38.0

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      +.+.|++|+.+++|++|..++ ++. ..|++..+|+..+++++ .||.|.|.....
T Consensus       113 ~~~~g~~i~~~~~v~~i~~~~-~~~-~~v~~~~~g~~~~~~a~-~vV~AdG~~S~v  165 (394)
T 1k0i_A          113 REACGATTVYQAAEVRLHDLQ-GER-PYVTFERDGERLRLDCD-YIAGCDGFHGIS  165 (394)
T ss_dssp             HHHTTCEEESSCEEEEEECTT-SSS-CEEEEEETTEEEEEECS-EEEECCCTTCST
T ss_pred             HHhcCCeEEeceeEEEEEEec-CCc-eEEEEecCCcEEEEEeC-EEEECCCCCcHH
Confidence            334599999999999998753 222 24666456766679995 899999975543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.88  E-value=0.77  Score=39.18  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=28.3

Q ss_pred             EEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |+|+|+ |..|..++.+|+++ |.+|.++.|..
T Consensus         3 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            789995 99999999999998 99999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=84.83  E-value=0.67  Score=41.61  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|+|.|+|..|..++.+|.++ |.+|.++.|...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            489999999999999999998 999999998653

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=84.74  E-value=0.49  Score=45.87  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -|.|||.|.+|+++|..|+++ |++|++.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            489999999999999999998 9999999986543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=84.69  E-value=0.55  Score=42.55  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|+++ |++|++.++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            478999999999999999998 99999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=84.69  E-value=0.68  Score=41.79  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .-.++|||+|.+|.++|..|++. |.+|.|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ-GLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            34689999999999999999998 899999988653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.50  E-value=0.69  Score=43.58  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|+|+|+|.+|..+|..|... |.+|+++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999988 99999999853

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.48  E-value=0.75  Score=42.12  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      -.++|||+|.+|..+|..|++. |. +|+|..|.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLST-AAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            3599999999999999999998 87 99999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=84.45  E-value=0.65  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --++|+|+|..|..+|..|+.. |.+|++.|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            3589999999999999999998 99999998753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=84.42  E-value=0.52  Score=42.55  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|+|+|.+|..+|..|++. |.+|+|..|..
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~~  152 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQA-QQNIVLANRTF  152 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            599999999999999999998 89999998863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=84.41  E-value=0.75  Score=42.67  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .-|.|||+|..|..+|..|+.. |+ +|.++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            4689999999999999999998 88 999999754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.39  E-value=0.57  Score=42.81  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=30.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ...-|+|||+|..|+.+|..|+.+ |. ++.|+|...
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            456899999999999999999998 74 899999754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=84.32  E-value=0.67  Score=48.06  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=30.6

Q ss_pred             ccEEEEC--CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVG--AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVG--sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|+|||  +|..|+-+|..|++. |.+|+|+|+++
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc
Confidence            3799998  999999999999998 99999999986

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=84.31  E-value=0.64  Score=44.97  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ..-|||.|..|+..|..||++ |++|+++++..
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~~   44 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKH-GVDVLGVDINQ   44 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             ccEEEeeCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            468999999999999999999 99999999854

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=84.30  E-value=0.74  Score=42.52  Aligned_cols=32  Identities=13%  Similarity=0.109  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|+++ | .+|++.++..
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            599999999999999999998 9 9999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.17  E-value=0.72  Score=41.42  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|...|..|++. |.+|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999998 99999998753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=84.13  E-value=0.79  Score=39.30  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             EEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |+|.|+ |..|..+|.+|+++ |.+|.++.|..
T Consensus         3 ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRR-GHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecc
Confidence            789997 99999999999998 99999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=84.04  E-value=0.82  Score=41.46  Aligned_cols=32  Identities=13%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|++. |.+|.++++..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            599999999999999999998 99999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=83.89  E-value=0.71  Score=44.22  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.|+|||+|.+|+.+|..|... |.+|+++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            4689999999999999988887 99999999754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=83.88  E-value=1  Score=41.45  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=32.4

Q ss_pred             CCCCCCcccEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         17 NKRLLDEYDFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        17 ~~~~~~~~DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++......-|+|.|+ |..|..+|.+|+++ |.+|.++.|..
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~   54 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFA   54 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            334444446899987 99999999999998 99999999854

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=83.87  E-value=0.52  Score=46.57  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHhHhhcC-------------CCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-------------PSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-------------~G~~VlvLE~G~~~~   60 (385)
                      .++|||+|++|+-+|.+|++.             ...+|+++|+++..-
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il  267 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL  267 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence            599999999999999998753             136899999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=83.86  E-value=0.57  Score=44.45  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.|+|||+|.+|..+|..|... |.+|+++++.+
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL-GAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35799999999999999998887 99999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.85  E-value=0.74  Score=40.92  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             cEEEECC-C-chHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGA-G-VGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGs-G-~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      =++|.|+ | -.|..+|.+|+++ |.+|+++.+..
T Consensus        24 ~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~   57 (266)
T 3o38_A           24 VVLVTAAAGTGIGSTTARRALLE-GADVVISDYHE   57 (266)
T ss_dssp             EEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCH
Confidence            3788898 7 5999999999998 99999998753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=83.81  E-value=0.85  Score=38.34  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|+|+ |..|..+|.+|+++ |.+|.++.|..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeCh
Confidence            4889987 99999999999998 99999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=83.77  E-value=0.84  Score=39.65  Aligned_cols=33  Identities=15%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             ccEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-++|.|+ |..|..+|.+|+++ |.+|.++.|..
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh
Confidence            35899997 99999999999998 99999999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=83.67  E-value=0.6  Score=43.19  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      .+.|||+|..|.++|..|+++ |.  +|.++|+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCCh
Confidence            378999999999999999998 88  999999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=83.64  E-value=1  Score=45.95  Aligned_cols=51  Identities=14%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      |..+++..|.+|++++.|.+|+++++.++++||.. .+|+  +++|+ .||.++.
T Consensus       384 L~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~-~~Ge--~i~A~-~VVs~~~  434 (650)
T 1vg0_A          384 FCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVID-QFGQ--RIISK-HFIIEDS  434 (650)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEE-TTSC--EEECS-EEEEEGG
T ss_pred             HHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEe-CCCC--EEEcC-EEEEChh
Confidence            44456678999999999999999842289999883 2343  57885 6777554

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=83.57  E-value=1.7  Score=41.07  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             hhhhhccCC-CeEEEeCcEEEEEEEcCCCCeEE-EEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy10417        260 YLKPIIDRT-NLHVIKNSRVVKIIIDPISKQAK-GVELVKNGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       260 ~l~~~~~~~-g~~i~~~~~V~~i~~~~~~~~v~-GV~~~~~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      .|...+++. |++|+.+++|++|..+  ++.++ .|++. +|+  ++++ +.||.|.|+...
T Consensus       112 ~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~-~g~--~~~a-d~vV~AdG~~s~  167 (399)
T 2x3n_A          112 LVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLN-DGR--VLRP-RVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEET-TSC--EEEE-EEEEECCCTTCH
T ss_pred             HHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEEC-CCC--EEEC-CEEEECCCCChH
Confidence            343344554 9999999999999987  44453 34443 343  6888 489999997544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=83.53  E-value=0.73  Score=42.59  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCC----ceEEEEecCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPS----WKVLLIEAGD   57 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G----~~VlvLE~G~   57 (385)
                      .+.+...+.|||.|..|...|..|+++ |    .+|.+.++..
T Consensus        18 ~~~~~mkI~iIG~G~mG~ala~~L~~~-G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           18 LYFQSMSVGFIGAGQLAFALAKGFTAA-GVLAAHKIMASSPDM   59 (322)
T ss_dssp             ----CCCEEEESCSHHHHHHHHHHHHT-TSSCGGGEEEECSCT
T ss_pred             hccCCCEEEEECCCHHHHHHHHHHHHC-CCCCcceEEEECCCc
Confidence            344455799999999999999999998 8    8999999865

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.48  E-value=0.64  Score=41.31  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      -+.|||.|..|...|..|+++ | .+|.+.++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCeEEEECCCH
Confidence            378999999999999999998 9 9999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=83.31  E-value=0.91  Score=41.09  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|++. |.+|.+.++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            478999999999999999998 99999998754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=83.22  E-value=1  Score=38.67  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             EEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|.| +|..|..+|.+|+++ |.+|.++.|..
T Consensus         3 ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (219)
T 3dqp_A            3 IFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKV   34 (219)
T ss_dssp             EEEESTTSHHHHHHHHHHTTS-SCEEEEEESSG
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            78998 799999999999998 99999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.18  E-value=0.98  Score=41.40  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+.|||.|..|...|..|++. |.+|.++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            35799999999999999999998 99999999854

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=83.14  E-value=0.83  Score=42.23  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      -.+.|||+|..|..+|..|+.. |. .|.++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            4699999999999999999998 98 99999986

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=83.12  E-value=0.52  Score=44.02  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC-------ceEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS-------WKVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G-------~~VlvLE~G~~   58 (385)
                      ..+.|||+|..|...|..|+++ |       .+|.++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            3699999999999999999998 8       89999998654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=83.05  E-value=0.62  Score=42.60  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCC----C-ceEEEEec
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVP----S-WKVLLIEA   55 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~----G-~~VlvLE~   55 (385)
                      ..+.|||+|..|...|..|++++    | .+|.+++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            46999999999999999999842    7 89999987

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=83.04  E-value=0.87  Score=41.25  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -++|+| +|.+|..+|..|+++ |.+|.++.|.
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            589999 899999999999998 9999999875

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.04  E-value=0.9  Score=45.62  Aligned_cols=34  Identities=26%  Similarity=0.552  Sum_probs=30.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..-|+|||+|..|+.+|..|+.. |. +++++|...
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~a-GVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            45799999999999999999998 86 799999754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=82.95  E-value=0.67  Score=42.57  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~   57 (385)
                      .+.|||+|..|..+|..|+++ |  ..|.++++..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCH
Confidence            488999999999999999998 8  7999999854

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=82.93  E-value=0.54  Score=44.47  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-------ceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-------WKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-------~~VlvLE~G~~   58 (385)
                      .+.|||+|..|...|..|+++ |       .+|.++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            599999999999999999998 8       89999998654

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=82.72  E-value=0.86  Score=45.86  Aligned_cols=35  Identities=26%  Similarity=0.518  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      ..-|+|||+|..|+.+|..|+.. |. +++++|....
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~a-GVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCCC
Confidence            45799999999999999999998 75 7999997654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.65  E-value=0.91  Score=43.06  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --|+|||+|..|..+|..|... |.+|+++++..
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGM-GATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999888 99999999753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=82.58  E-value=0.8  Score=47.45  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+++ |++|+++|+..
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999998 99999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.58  E-value=0.88  Score=41.14  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+ |..|..+|..|+++ |.+|.++++..
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDS-AHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            5999999 99999999999998 99999998753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=82.41  E-value=0.98  Score=41.75  Aligned_cols=32  Identities=13%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      --++|+|+|.+|.++|..|++. |. +|.|+.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            3689999999999999999998 87 89999886

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=82.40  E-value=1  Score=41.39  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~   57 (385)
                      .+.|||+|..|..+|..|++. .|.+|.++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            478999999999999999984 278999999865

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.40  E-value=0.97  Score=42.96  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.|+|||+|.+|+.+|..|... |.+|+++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            34799999999999999988887 99999999764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=82.36  E-value=1.1  Score=41.09  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...+.|||.|..|...|..|+++ |++|++.++..
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            34699999999999999999998 99999998754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=82.31  E-value=0.79  Score=43.08  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..-|+|||+|..|+.+|..|+.+ |. ++.|+|...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATS-GIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCCc
Confidence            45799999999999999999998 75 899999754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=82.30  E-value=0.92  Score=41.86  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      .-+.|||.|..|.++|..|+++ |.  +|.+.++..
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            4699999999999999999998 99  999999854

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=82.29  E-value=0.93  Score=40.74  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      .+.|||.|..|..+|..|++. |.  +|++.++..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCH
Confidence            378999999999999999998 88  899998753

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=82.06  E-value=0.95  Score=42.73  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      --|+|+|+|..|..+|..|.+. |.+|++.|+.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3589999999999999999998 9999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=82.01  E-value=0.48  Score=41.22  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEE-EecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLL-IEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~Vlv-LE~G~   57 (385)
                      ..+.|||+|..|...|..|+++ |.+|++ .++..
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCH
Confidence            4699999999999999999998 999998 77754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.00  E-value=0.99  Score=41.00  Aligned_cols=32  Identities=28%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      --++|+|+|.+|.++|..|++. |. +|.|+.|.
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~  160 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            3689999999999999999998 87 79999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=81.83  E-value=1.3  Score=41.01  Aligned_cols=33  Identities=15%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             cccEEEECCC-chHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAG-VGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG-~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .-.++|||+| +.|..+|..|+.. |.+|+|++|.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCc
Confidence            4579999999 6799999999998 9999999875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=81.82  E-value=1.1  Score=38.42  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=27.7

Q ss_pred             EEEEC-CCchHHHHHhHhh-cCCCceEEEEecCC
Q psy10417         26 FIIVG-AGVGGCVVAHRLS-EVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVG-sG~aG~~~A~~La-~~~G~~VlvLE~G~   57 (385)
                      ++|.| +|..|..+|.+|+ ++ |.+|.++.|..
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~   40 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYT-DMHITLYGRQL   40 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCc
Confidence            89999 5999999999999 77 99999999853

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=81.80  E-value=0.78  Score=42.22  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      ..|.|||.|..|...|..|+++ |+ +|.+.++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            4699999999999999999998 99 99999985

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=81.79  E-value=1.2  Score=40.42  Aligned_cols=34  Identities=12%  Similarity=0.199  Sum_probs=29.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .-.++|+|+|.+|.++|..|++. |. +|.|+.|-.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            34699999999999999999998 87 899998753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=81.77  E-value=1  Score=44.26  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.++.|||.|..|...|..|+++ |.+|.+.+|..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            45799999999999999999998 99999998854

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=81.44  E-value=1  Score=45.02  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||.|-.|..+|..|.+. |.+|+++|+.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChHH
Confidence            5799999999999999999998 9999999987643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=81.41  E-value=1.1  Score=40.73  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --+.|||.|..|..+|..|... |.+|++.++..
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAAL-GAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            4699999999999999999988 99999999753

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=81.40  E-value=0.61  Score=41.10  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      ..+.|||.|..|.+.|..|.++ |++|.++++-
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~-G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSV-GHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHT-TCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHC-CCEEEEecCH
Confidence            3689999999999999999998 9999998873

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=81.29  E-value=1.3  Score=38.72  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=27.7

Q ss_pred             EEEECC-CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|.|+ |..|..+|.+|+++ |.+|+++.|..
T Consensus         4 vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~   35 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARA-GHTVIGIDRGQ   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCh
Confidence            678876 89999999999998 99999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=81.26  E-value=1.1  Score=41.28  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=28.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..|+.. |. +|.++|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            589999999999999999998 86 899999754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=81.06  E-value=1.1  Score=39.99  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      -++|||+|.+|.++|..|++. |. +|.|..|-
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            799999999999999999998 87 89999885

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=81.06  E-value=1.2  Score=40.74  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      --+.|||.|..|..+|..|... |.+|++.++..
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAAL-GANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            4699999999999999999988 99999999753

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=80.96  E-value=0.94  Score=41.03  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      -.++|||+|.+|..+|..|++. |. +|.|..|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKI-VRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            4689999999999999999998 87 899998754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=80.90  E-value=1.1  Score=43.63  Aligned_cols=31  Identities=26%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -|+|||+|..|...|..|.+. |.+|+|++..
T Consensus        14 ~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           14 DCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            589999999999999999998 9999999963

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=80.88  E-value=1.7  Score=42.65  Aligned_cols=52  Identities=13%  Similarity=0.099  Sum_probs=38.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAF  317 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~  317 (385)
                      .|...+.+.|++++.+ +|++|..++ ++.+.+|++.+ |+  +++|+ .||.|+|+.
T Consensus       178 ~L~~~a~~~gv~~~~~-~v~~i~~~~-~~~~~~v~~~~-g~--~~~ad-~vV~A~G~~  229 (511)
T 2weu_A          178 YLSEYAIARGVRHVVD-DVQHVGQDE-RGWISGVHTKQ-HG--EISGD-LFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEESS-SC--EEECS-EEEECCGGG
T ss_pred             HHHHHHHHCCCEEEEC-eEeEEEEcC-CCCEEEEEECC-CC--EEEcC-EEEECCCcc
Confidence            3444445579999999 999998854 46677777654 43  68895 899999963

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=80.88  E-value=0.92  Score=40.31  Aligned_cols=29  Identities=21%  Similarity=0.146  Sum_probs=26.8

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      +.|||.|..|...|..|+++ |++|++.++
T Consensus         3 I~iIG~G~mG~~la~~l~~~-g~~V~~~~~   31 (264)
T 1i36_A            3 VGFIGFGEVAQTLASRLRSR-GVEVVTSLE   31 (264)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCEEEECCT
T ss_pred             EEEEechHHHHHHHHHHHHC-CCeEEEeCC
Confidence            78999999999999999998 999999765

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=80.86  E-value=1.7  Score=38.87  Aligned_cols=31  Identities=13%  Similarity=0.019  Sum_probs=27.8

Q ss_pred             EEEECC---CchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGA---GVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGs---G~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|.|+   |..|..+|.+|+++ |.+|+++.|..
T Consensus         9 vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~   42 (275)
T 2pd4_A            9 GLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   42 (275)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            788886   68999999999998 99999999865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=80.78  E-value=0.91  Score=40.93  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -.++|||+|..|..+|..|++. |.+|.+.+|..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE-GAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            3699999999999999999998 88999998753

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=80.74  E-value=0.86  Score=42.71  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ...|+|||.|..|+.+|..|+.. |. +++|+|-..
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~-Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILA-GVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            56899999999999999999998 87 899998654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=80.74  E-value=1.4  Score=40.02  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      --++|+|+|.+|..+|..|++. |. +|.|..|..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQ-QPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence            4689999999999999999998 95 999998853

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=80.72  E-value=0.97  Score=44.97  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.|+|||+|..|+-+|..|++. |.+|++++|.+..
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~-~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhc-CceEEEEEcCCcc
Confidence            3689999999999999999998 9999999997644

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=80.68  E-value=1.2  Score=42.69  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|+..|..|++  |.+|+++++..
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECCH
Confidence            37899999999999999997  79999999753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=80.57  E-value=1  Score=44.18  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||.|..|...|..|+++ |.+|.+.++..
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            689999999999999999998 99999999853

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=80.45  E-value=1.5  Score=40.48  Aligned_cols=33  Identities=21%  Similarity=0.081  Sum_probs=28.7

Q ss_pred             cEEEECCCchHHH-HHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCV-VAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~-~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -+.|||.|.+|++ +|..|.++ |++|.+.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~-G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEA-GFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHhC-CCEEEEEcCCCC
Confidence            4789999999996 77778888 999999998754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=80.32  E-value=1.2  Score=43.49  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCC-CceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVP-SWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~-G~~VlvLE~G~   57 (385)
                      ..+.|||.|..|+..|..|+++. |.+|+++++..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            36999999999999999999962 68999999753

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=80.22  E-value=1.2  Score=43.67  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++.|||.|..|...|..|+++ |.+|.+.++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4689999999999999999998 99999999854

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=80.12  E-value=1.1  Score=44.02  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.7

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G   56 (385)
                      .+.|||.|..|+..|..|+++ +|.+|+++++.
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            699999999999999999997 26899999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=80.08  E-value=1.3  Score=39.99  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=29.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G   56 (385)
                      .--++|+|+|.+|..+|..|++. |. +|.|+.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQA-GPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            34689999999999999999998 85 99999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=80.04  E-value=1.4  Score=42.82  Aligned_cols=49  Identities=16%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             CCeEEEeCcEEEEEEEcCCCCeEEEEEEEe---------------CCeEEEEEeCcEEEEcCCCcccH
Q psy10417        268 TNLHVIKNSRVVKIIIDPISKQAKGVELVK---------------NGHKRSVFARKEVIVSSGAFNSP  320 (385)
Q Consensus       268 ~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~---------------~g~~~~i~a~k~VVlAaGa~~tp  320 (385)
                      .|++|++++.+.+|.-+   +++.+|++.+               +|+..++.++ .||+|.|.-.++
T Consensus       265 ~gv~i~~~~~~~~i~~~---~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d-~vi~a~G~~p~~  328 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK---RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQ-LVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEECSEEEEEEECS---SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECS-EEEECSCEECCC
T ss_pred             ceEEEEeCCCCeEEecC---CcEeEEEEEEEEecCCCcccccccCCCceEEEEcC-EEEEccccccCC
Confidence            68999999999998743   4566676653               3445679996 899999976665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	6e-66
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	4e-65
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	5e-48
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-46
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-43
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-39
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	6e-27
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	2e-21
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	8e-10
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	5e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	6e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	8e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	8e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	1e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	2e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	2e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	3e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	3e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	4e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	5e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	5e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	5e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	6e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	8e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	8e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.001
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.001
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.001
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.002
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.002
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	0.003
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.003
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.004

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  212 bits (540), Expect = 6e-66
 Identities = 82/340 (24%), Positives = 140/340 (41%), Gaps = 37/340 (10%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYY---QFTPYNW 79
             D+II G G+ G   A RL+E P+  VL+IE+G  +     ++   + Y     +  + 
Sbjct: 17  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 76

Query: 80  GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW-SF 138
            ++T           N   L   G G+GGST++NG  +TR      + WE++      ++
Sbjct: 77  AYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNW 131

Query: 139 DDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHN 198
           D+V  Y  + ER   P        H  N                         S    + 
Sbjct: 132 DNVAAYSLQAERARAPNAKQIAAGHYFNA------------------------SCHGVNG 167

Query: 199 TNGLLNVEYSPYKSKLSDIFLKSSKELGY-TNIDYNNPNTKIGFSIVQSTIKNGRRMTAS 257
           T      +     S +    + + ++ G  T  D+   +         +  ++  R  A+
Sbjct: 168 TVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAA 227

Query: 258 KAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELV-KNGHKRSVFARKEVIVSS 314
           + +L P   R NL V+    V K+++     + +A GVE     G+  +V+A+ EV++++
Sbjct: 228 REWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAA 287

Query: 315 GAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
           G+  SP +L  SG+G +  L  LGI  V DL VG   M  
Sbjct: 288 GSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMP 327

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  210 bits (535), Expect = 4e-65
 Identities = 89/347 (25%), Positives = 146/347 (42%), Gaps = 46/347 (13%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYY---QFTPYN 78
             YD+II G G+ G  VA +L+E P  KVL+IE G  +     ++   + Y     T  +
Sbjct: 23  KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82

Query: 79  WGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES-LGNTGWS 137
             + T P  N      N       GKG+GGST+ING+ +TR      + WE   G  GW+
Sbjct: 83  QNYLTVPLIN------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136

Query: 138 FDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYH 197
           +D++ +Y KK E    P        H+ N                              H
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNA---------------------------TCH 169

Query: 198 NTNGLLNV---EYSPYKSKLSDIFLKSSKELG-YTNIDYNNPNTKIGFSIVQSTIKNGRR 253
            TNG +     +     S +    + +   LG     D+   + +    I+ +  +N  R
Sbjct: 170 GTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVR 229

Query: 254 MTASKAYLKPIIDRTNLHVIKNSRVVKIIID--PISKQAKGVELVKNGHKR-SVFARKEV 310
           + A++A+L P   R+NL ++    V K++        QA GV    N      VFA+ EV
Sbjct: 230 VDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEV 289

Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR--VGDNLMEHV 355
           ++++G+  SP +L  SG+G +  L +  +  + DL   +   +   +
Sbjct: 290 LLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSREL 336

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  165 bits (418), Expect = 5e-48
 Identities = 42/353 (11%), Positives = 91/353 (25%), Gaps = 60/353 (16%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
           +YD +IVG+G  GC  A  L     +KV + + G+ D          +  ++      F 
Sbjct: 4   KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 62

Query: 83  TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWE----------SLG 132
              Q            L                 F R   N   +             +G
Sbjct: 63  NVIQGQLMSVSVPVNTLVVDTLSPTSW--QASTFFVRNGSNPEQDPLRNLSGQAVTRVVG 120

Query: 133 NTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNS 192
                +      F + +R     L         +   +  Y+                  
Sbjct: 121 GMSTHWTCATPRFDREQR----PLLVKDDADADDAEWDRLYT------------------ 158

Query: 193 DTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFS----IVQSTI 248
                        +   Y    +D F +S +     N        +  F           
Sbjct: 159 -------------KAESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRS 205

Query: 249 KNGRRMTASKAYLKPII------DRTNLHVIKNSRVVKIIIDPISKQAKGVELV-KNGHK 301
                 +++                   ++       +++ + ++ + + + +       
Sbjct: 206 PTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGD 265

Query: 302 RSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEH 354
           R        ++++GA ++ +LL+ SG G          P +    +G + M  
Sbjct: 266 RFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS-LGSHRMGF 317

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  161 bits (408), Expect = 1e-46
 Identities = 57/366 (15%), Positives = 104/366 (28%), Gaps = 69/366 (18%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLI------------- 68
           D    +++G+G GG V A RL++       ++E G           I             
Sbjct: 6   DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

Query: 69  ------SHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFP 122
                      F  +                  +     QG+GVGG +++NG +      
Sbjct: 65  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 124

Query: 123 NDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSD 182
           N F E     ++   ++    YF +                  N       S    K + 
Sbjct: 125 NYFEEILPSVDSNEMYNK---YFPRANT----------GLGVNNIDQAWFESTEWYKFAR 171

Query: 183 IFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFS 242
              K                        +S  +  F+ +  +  Y   +     TK G  
Sbjct: 172 TGRKT---------------------AQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLG 210

Query: 243 IVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKR 302
                  N  + +  K YL        L +    RV K+           V + +   + 
Sbjct: 211 GEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT--GSGYSVTMEQIDEQG 268

Query: 303 SVFAR-----KEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAY 357
           +V A        V  ++G+  + KLL+           +  +P +   +VG+     +  
Sbjct: 269 NVVATKVVTADRVFFAAGSVGTSKLLVSMK-------AQGHLPNLSS-QVGEGWGVLLNK 320

Query: 358 SALTFG 363
           +   FG
Sbjct: 321 ATDNFG 326

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score =  152 bits (385), Expect = 2e-43
 Identities = 51/363 (14%), Positives = 100/363 (27%), Gaps = 66/363 (18%)

Query: 24  YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR--------------------IFT 63
              +++G G G  V A RL E    + L++E G                         F 
Sbjct: 3   VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 64  DLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPN 123
           +                    P       +  +Q     G+GVGG +++NG +      +
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 124 DFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDI 183
            F E         S +   +YF +             +    +            K + +
Sbjct: 122 YFEEIL---PRVDSSEMYDRYFPRANS----------MLRVNHIDTKWFEDTEWYKFARV 168

Query: 184 FLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSI 243
                                      K+ L  +F+ +  + GY   +      K   + 
Sbjct: 169 SR---------------------EQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALAT 207

Query: 244 VQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHK-- 301
                 N  + +  K YL   +    + +    +V  I        A  VE      K  
Sbjct: 208 EVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLL 267

Query: 302 -RSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLRVGDNLMEHVAYSAL 360
                + + + + +G+  S +LL+ +            +P +    VG      +  +  
Sbjct: 268 ATKEISCRYLFLGAGSLGSTELLVRAR-------DTGTLPNLNS-EVGAGWGCVLGKATD 319

Query: 361 TFG 363
            +G
Sbjct: 320 DYG 322

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  140 bits (354), Expect = 5e-39
 Identities = 75/373 (20%), Positives = 116/373 (31%), Gaps = 66/373 (17%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP------ 76
            YD+IIVGAG GG + A RLSE    KVLL+E G      T    ++ +   +       
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 77  --YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNT 134
                   T                   G  VGG T +NG ++      DF+        
Sbjct: 61  PGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---GW 113

Query: 135 GWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDT 194
             S+ +   Y  K                                              T
Sbjct: 114 PSSWTNHAPYTSKLSS---------------------------------------RLPST 134

Query: 195 VYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRM 254
            + +T+G     Y      +    LK       T  D  N    + F        NG+R 
Sbjct: 135 DHPSTDGQR---YLEQSFNVVSQLLKGQGYNQATINDNPNYKDHV-FGYSAFDFLNGKRA 190

Query: 255 TASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVEL----VKNGHKRSVFARKEV 310
                YL+  + R N     N  V  ++ +    Q  GV+     +       V  +  V
Sbjct: 191 GPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRV 248

Query: 311 IVSSGAFNSPKLLMLSGVGPREHLTELGI-PVVQDLRVGDNLMEHVAYSALTFGINKTFS 369
           I+S+GAF + ++L  SG+GP + +  +   P         N   ++     T G +   +
Sbjct: 249 ILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSA 308

Query: 370 VVTKRLLRQPIKT 382
           VV   +       
Sbjct: 309 VVDSNVKVFGTNN 321

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  107 bits (268), Expect = 6e-27
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 17  NKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTP 76
           +  L   YD++IVG G  GC +A  LSE   +KVL++E G     + +++    +     
Sbjct: 20  DLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ 77

Query: 77  YNWGFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW 136
                KT  ++     +  +     +G+ +GG++IIN  ++ R   + ++         W
Sbjct: 78  QEDDGKTPVER----FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDW 129

Query: 137 SFDDVLKYFKKFE 149
             D V + ++  E
Sbjct: 130 DMDLVNQTYEWVE 142

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 92.3 bits (228), Expect = 2e-21
 Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 6/158 (3%)

Query: 224 ELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIII 283
           E G       + + + G  I  ST  N     A+   L       NL V  ++ V KII 
Sbjct: 164 EAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSN-NLRVGVHASVEKIIF 222

Query: 284 DPISKQAKGVELVKNG----HKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGI 339
                      + ++     H+  V ++ EVIVS+G   +P+LL+LSGVGP  +L+ L I
Sbjct: 223 SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNI 282

Query: 340 PVVQDLR-VGDNLMEHVAYSALTFGINKTFSVVTKRLL 376
           PVV     VG  L+  V              VV     
Sbjct: 283 PVVLSHPYVGQCLVGKVLDGDFRVTGINALRVVDGSTF 320

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 8e-10
 Identities = 34/301 (11%), Positives = 87/301 (28%), Gaps = 16/301 (5%)

Query: 22  DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA----GDEDRIFTDLVLISHYYQFTPY 77
            +YD I++G G+  C+++  LS     KVL I+     G E    T   L   + Q    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62

Query: 78  NWGFKTTPQKNACLGLPNN-QCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGW 136
               ++   K+    +    + L   G+        +   +        +     G    
Sbjct: 63  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK 122

Query: 137 SFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVY 196
              + ++           +          +     + S ++    D      ++    + 
Sbjct: 123 VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLG 182

Query: 197 HNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNIDYNNPNTKIGFSIVQSTIKNGRRMTA 256
           ++T   +    + + +   D   + ++      + Y     + G S     +     +  
Sbjct: 183 NSTKEFIGHAMALWTN--DDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQ 240

Query: 257 SKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGA 316
                  +        + ++ + +++    + + +GV           F    VI     
Sbjct: 241 G---FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV--KTKLGT---FKAPLVIADPTY 292

Query: 317 F 317
           F
Sbjct: 293 F 293

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          +EYD I++G G+  C+++  +S     KVL ++    
Sbjct: 5  EEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPY 40

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          E D ++VGAG  G   A+ +S+ P+ +V +IE    
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          +D I+VGAG  G    ++L++    K LL++A D
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
           Y+ +++G G+ G  +A+ L++  +    L E+G 
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGT 37

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          D  D ++VG+G  G   A   ++    KV+LIE      
Sbjct: 15 DTVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIG 52

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          YD+IIVG+G+ G V A+ L ++ + KVL+IE  + 
Sbjct: 2  YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
           YD I++G G  G + A   +E     VLL++ G++
Sbjct: 2  HYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNK 36

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPS-----WKVLLIEAGDE 58
          R  +E D +IVGAG  G   A RL ++ +      +V L+E    
Sbjct: 28 RFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 11/67 (16%), Positives = 21/67 (31%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
           +D +++GAG GG   A   + +   +V +I+            L               
Sbjct: 3  IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLM 62

Query: 83 TTPQKNA 89
           T  +  
Sbjct: 63 VTGAQYM 69

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 25  DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRIFTDLVLISHYYQFTPYNWGFK 82
             I+VGAG+ G   A RLSE     +L++EA D    R+       +        NW   
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK--TNFAGINVELGANWVEG 59

Query: 83  TTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVL 142
               K   +    N  L  +        +        G   D +  +       S +++ 
Sbjct: 60  VNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMG 119

Query: 143 KYFKKFERINIPELNS 158
           +        +  +  S
Sbjct: 120 EKLSATLHASGRDDMS 135

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
             +I+GAG+ G  +A  L       + +++ G 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          DE D +I+G G GG V A + +++  +K   IE    
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGA 37

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
          +  D +I+G+G  G   A    +  + KV+L+E        T L         T    
Sbjct: 22 ETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTKLAAGGMNAAETKPQA 78

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 7  APKREEFLYGNKRLLD--EYDFIIVGAGVGGCVVAHRLSEV---PSWKVLLIEAGDEDR 60
           PK+ E    ++   +  E D +I+G G  GC  A+  +        KV L+E    +R
Sbjct: 3  YPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER 61

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
            D +I+G+G  G  +A RL++    +V+++  G    
Sbjct: 7  SCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVTE 42

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          D ++VG G+ G   A  L +     V+++EA D
Sbjct: 1  DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARD 32

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          D +I GAG+GG   A  L +    KV L+E+  E R
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          +  +VG G+ G  VAH L        +L+E+   
Sbjct: 2  NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSAR 34

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          +    ++VGAG  G   +    +     V+L++      
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSG 55

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
          EYD +++G G GG   A   ++    KV ++E   
Sbjct: 6  EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYK 39

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
           YD++++G G GG   A R +E+   +  ++E+ 
Sbjct: 3  SYDYLVIGGGSGGLASARRAAEL-GARAAVVESH 35

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 12/82 (14%), Positives = 22/82 (26%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
            YD +++GAG GG       + +   +V +I+            L               
Sbjct: 3   AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLM 62

Query: 83  TTPQKNACLGLPNNQCLWPQGK 104
            T          +    W   +
Sbjct: 63  VTGANYMDTIRESAGFGWELDR 84

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 23  EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFK 82
           E + ++VGAG GG V A R +++   KV ++E G+   +  ++  I      +  +   +
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQ 61

Query: 83  TTPQKNACLGLPNNQCLWPQ 102
               +   +   N    + +
Sbjct: 62  AKHSEEMGIKAENVTIDFAK 81

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 8  PKREEFL----YGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRI 61
             EEFL     G K   +    +IVGAG+ G   A+ L+     +V ++EA +    R+
Sbjct: 11 NDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAG-HQVTVLEASERPGGRV 69

Query: 62 FTDLVLISHYYQFTPYNWGFKTTP 85
           T     + +Y         +   
Sbjct: 70 RTYRNEEAGWYANLGPMRLPEKHR 93

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
          +   +I+G G GG V A R  ++     +L+E  
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ 37

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYN 78
          ++D II+G G GG   A   ++    KV++++      + T+  L           
Sbjct: 3  DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIP 57

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD 57
           YD+I +G G GG    +R +     K  LIEA +
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 35

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
            +D +I+G G  G V A + +++  +    +E   +
Sbjct: 4  KSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGK 39

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDEDR 60
          + D  IVGAG  G   A   ++  P+ K+ LI      R
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
             + II+GAG  G   A +L++     V + + G +
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKK 38

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
            D +++G G+ G   A    +      +++      R
Sbjct: 5  YCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPVKR 41

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPS----WKVLLIEAGDEDR 60
             D +IVGAG  G + A  LSE        KV +I+      
Sbjct: 6  SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 23/204 (11%), Positives = 56/204 (27%), Gaps = 12/204 (5%)

Query: 26  FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE----DRIFTDLVLISHYYQFTPYNWGF 81
            +IVGAG  G V+  +L+E    +V +I+  D          D       + + P+ +  
Sbjct: 5   ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT 63

Query: 82  KTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDV 141
                 N             + K      + +        P + +      +   S D+ 
Sbjct: 64  DNETVWNYVNKHAEMMPYVNRVKATVNGQVFS-------LPINLHTINQFFSKTCSPDEA 116

Query: 142 LKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNG 201
                +     I +  +            +  + +K      +         ++      
Sbjct: 117 RALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPV 176

Query: 202 LLNVEYSPYKSKLSDIFLKSSKEL 225
             N + + +  K   +      ++
Sbjct: 177 RFNYDDNYFNHKFQGMPKCGYTQM 200

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 17/151 (11%)

Query: 27  IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE--DRIFTDLV------LISHYYQFTPYN 78
           II+G+GV G   A +L       V L+EA D    R+ T         L +        N
Sbjct: 9   IIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 67

Query: 79  W--------GFKTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWES 130
                      +    K  C     N    P+ K        N  +    + +   ++  
Sbjct: 68  PMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNV 127

Query: 131 LGNTGWSFDDVLKYFKKFERINIPELNSDTV 161
           L N   S    L+   + +  ++ +   +  
Sbjct: 128 LNNKPVSLGQALEVVIQLQEKHVKDEQIEHW 158

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG 56
          YD I++G G GG   A R +   + KV L+E  
Sbjct: 2  YDLIVIGGGSGGMAAARRAARH-NAKVALVEKS 33

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNW 79
          ++D I++GAG GG V A + +++   K  LIE        T L          P   
Sbjct: 3  KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKA 58

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 27 IIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
           ++GAGV G   A++L       V + EA  +
Sbjct: 5  AVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGK 35

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          EYD I +G G  G   +  L  +   + L+++    
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPF 76

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDEDRIFTDLVLISHYY 72
              F+++G G      A  +    P  +VL++   ++  +      +S   
Sbjct: 3  SHVPFLLIGGGTAAFAAARSIRARDPGARVLIV--SEDPELPYMRPPLSKEL 52

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR 60
          E+D +++GAG  G   A ++S+       L+      R
Sbjct: 7  EFDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFPTR 43

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE 58
          +E D ++VGAG  G    +RL E     V +IE   +
Sbjct: 6  EEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 41

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTD 64
              I+GAG  G ++   L +      +++E    D +   
Sbjct: 3  TQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTPDYVLGR 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.94
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.73
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.69
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.67
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.62
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.61
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.61
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.57
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.5
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.5
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.41
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.32
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.3
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.27
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.0
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.89
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.72
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.65
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.61
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.54
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.54
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.51
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.51
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.44
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.43
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.41
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.39
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.39
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.38
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.37
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.36
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.33
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.31
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.31
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.3
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.27
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.27
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.26
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.17
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.15
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.13
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.13
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.13
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.12
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.12
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.11
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.1
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.09
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.07
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.07
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.97
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.96
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.96
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.86
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.84
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.8
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.66
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.42
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.3
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.26
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.18
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.16
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.13
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.89
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.77
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.76
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.67
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.48
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.3
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.3
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.26
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.18
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.14
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.13
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.04
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.48
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.44
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.09
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.78
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.01
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.75
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.64
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.59
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.47
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.28
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.18
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.97
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.96
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.66
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.65
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	90.81
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.46
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.36
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.29
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.07
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.62
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.3
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.06
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	88.94
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.74
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.55
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.44
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.39
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.87
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.08
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.98
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.83
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.48
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.35
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	86.04
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	85.59
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.51
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	85.47
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.45
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	85.18
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	85.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.87
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.85
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	83.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	83.35
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.34
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	82.89
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.55
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.52
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.44
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	82.39
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	82.36
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.84
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.69
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	81.65
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	81.63
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.58
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	81.06
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.02
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	80.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.79
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.71
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	80.59
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	80.49
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.36
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.28

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=1.5e-49  Score=386.50  Aligned_cols=303  Identities=28%  Similarity=0.435  Sum_probs=242.8

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc---cccchhhhccccCCCCccccccccCCccccCCCCCe
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI---FTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQ   97 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
                      .+.|||||||||++|+++|.+||++++.+|||||+|+....   ....|.......++.++|.+.+.|+      .+++.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~------~~~r~   95 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRT   95 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC------TTSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec------CCCcE
Confidence            34799999999999999999999983479999999986532   2345555555667788999888776      45778


Q ss_pred             eeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCc
Q psy10417         98 CLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY  176 (385)
Q Consensus        98 ~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
                      +.+++|+++||+|.+|++++.|+.+.||+.|... +..+|+|+++.|||+++|.+.......                  
T Consensus        96 ~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~------------------  157 (391)
T d1gpea1          96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQ------------------  157 (391)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHH------------------
T ss_pred             eeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchh------------------
Confidence            8999999999999999999999999999999876 688999999999999999887643110                  


Q ss_pred             cccchhhhhhccccCCCCcccCCCcceEeeeCC---CCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeecc-ccCC
Q psy10417        177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSP---YKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQST-IKNG  251 (385)
Q Consensus       177 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~-~~~g  251 (385)
                              ... ....+..+++..+++......   ...++.+.+.++++.+|++. .++++.. ..+++.+... +..+
T Consensus       158 --------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~-~~~~~~~~~~~~~~~  227 (391)
T d1gpea1         158 --------LAA-GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQ  227 (391)
T ss_dssp             --------HHH-TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTC
T ss_pred             --------ccc-ccCccccccCCCCcccccccccccccCHHHHHHHHHHHhcCCceeeccccCc-ccccccccceeeccc
Confidence                    000 001145567777777765433   33578888999999999987 3455544 4455444333 2345


Q ss_pred             cccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCC--CCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPI--SKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       252 ~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~--~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .|.++..+++.+...+.|++|++++.|++|++++.  +.+|+||++.+ ++..++++|+|+||||||+|+||+||++|||
T Consensus       228 ~r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGI  307 (391)
T d1gpea1         228 VRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (391)
T ss_dssp             CBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             cccchhhhccCccccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCC
Confidence            67777788888888899999999999999998642  34899999875 5777899998889999999999999999999


Q ss_pred             CChhhhhhcCCCcccccc--chhhhhhccCC
Q psy10417        329 GPREHLTELGIPVVQDLR--VGDNLMEHVAY  357 (385)
Q Consensus       329 g~~~~l~~~gi~~~~~~p--vG~~l~dh~~~  357 (385)
                      ||.++|+++||++++++|  ||+||+||+..
T Consensus       308 Gp~~~L~~~gI~~v~dlP~Gvg~nl~dh~~~  338 (391)
T d1gpea1         308 GLKSVLDQANVTQLLDLPVGICSMMSRELGG  338 (391)
T ss_dssp             ECHHHHHHTTCCCSEECCTTCTCBSCGGGTC
T ss_pred             CcHHHHHHCCCCEEEECCcccccccccCccc
Confidence            999999999999999998  99999999963

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=7.9e-48  Score=373.71  Aligned_cols=303  Identities=28%  Similarity=0.451  Sum_probs=236.4

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc---cccchhhhccccCCCCccccccccCCccccCCCCCe
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI---FTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQ   97 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
                      .+.|||||||||++|+++|.+|+++++++|||||+|+....   ....+.......++.++|.+.+.++.     .+++.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~-----~~~r~   89 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQT   89 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC-----CCCce
Confidence            34799999999999999999999985589999999986532   22334444445667788888776542     56788


Q ss_pred             eeecCcceecccccccCcEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCc
Q psy10417         98 CLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESL-GNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPY  176 (385)
Q Consensus        98 ~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~-~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
                      +.+++|++|||+|.+|+|++.|+.+.||+.|.+. +..+|+|++++|||+++|++..+....                  
T Consensus        90 ~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~------------------  151 (385)
T d1cf3a1          90 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQ------------------  151 (385)
T ss_dssp             CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHH------------------
T ss_pred             eeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCccc------------------
Confidence            8999999999999999999999999999999987 578999999999999999987753110                  


Q ss_pred             cccchhhhhhccccCCCCcccCCCcceEeeeCC---CCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeecccc-CC
Q psy10417        177 KSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSP---YKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIK-NG  251 (385)
Q Consensus       177 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~-~g  251 (385)
                             .....  ..+...++..++..+....   ...++.+.+.++++++|++. .+.++.. ..+++.|...+. ..
T Consensus       152 -------~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~-~~~~~~~~~~~~~~~  221 (385)
T d1cf3a1         152 -------IAAGH--YFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQ  221 (385)
T ss_dssp             -------HHHTC--CCCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTC
T ss_pred             -------ccccc--cccccccCCcccccccccccccccCHHHHHHHHHHHHcCCCCcCCccccc-ccccccccccccccc
Confidence                   00000  0034455566666654332   34578888999999999987 5677766 666665554433 34


Q ss_pred             cccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCC--CeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy10417        252 RRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPIS--KQAKGVELV-KNGHKRSVFARKEVIVSSGAFNSPKLLMLSGV  328 (385)
Q Consensus       252 ~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~--~~v~GV~~~-~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgi  328 (385)
                      .+..+...++.++.++.|++|++++.|++|++++++  .|++||++. .+|+.++++|+|+||||||+|+||+||++|||
T Consensus       222 ~~~~s~~~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGI  301 (385)
T d1cf3a1         222 VRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  301 (385)
T ss_dssp             BBCCHHHHHTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             cchhhhhhhcCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCC
Confidence            455566778888889999999999999999998532  389999986 47888999998889999999999999999999


Q ss_pred             CChhhhhhcCCCcccccc-chhhhhhccC
Q psy10417        329 GPREHLTELGIPVVQDLR-VGDNLMEHVA  356 (385)
Q Consensus       329 g~~~~l~~~gi~~~~~~p-vG~~l~dh~~  356 (385)
                      ||.++|+++||+++.|+| ++.++++|..
T Consensus       302 Gp~~~L~~~gI~~~~dlP~g~~~~~~~~~  330 (385)
T d1cf3a1         302 GMKSILEPLGIDTVVDLPVGLCSMMPKEM  330 (385)
T ss_dssp             SCHHHHGGGTCCCSBCCCTTCTCBSCGGG
T ss_pred             CcHHHHHHCCCCeEEECCcchhccCCCCc
Confidence            999999999999999999 4444444443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=8.7e-47  Score=361.86  Aligned_cols=274  Identities=28%  Similarity=0.399  Sum_probs=206.1

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccccCCCCccccccccCCccccCCCCCee
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYYQFTPYNWGFKTTPQKNACLGLPNNQC   98 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (385)
                      .+..+|||||||||++|+++|.+||++  .+|||||+|+........+.......+....|.+...++..    ..+..+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   95 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VSEDGI   95 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEE----ECTTSC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCC--CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccc----cCCCce
Confidence            556689999999999999999999984  79999999985422111111111011111122222222222    456678


Q ss_pred             eecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCccccccCCccc
Q psy10417         99 LWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEYSPYKS  178 (385)
Q Consensus        99 ~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
                      .+++|++|||+|.+|+++++|+.+.||+.|.    .+|+|+++.+||+++|.......                      
T Consensus        96 ~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~~----------------------  149 (351)
T d1ju2a1          96 DNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYKP----------------------  149 (351)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBCC----------------------
T ss_pred             eeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeeccccccccc----------------------
Confidence            8999999999999999999999999999883    57999999999999997654210                      


Q ss_pred             cchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC-CCCCCCCCCceeeeeeccccCCcccchh
Q psy10417        179 KLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN-IDYNNPNTKIGFSIVQSTIKNGRRMTAS  257 (385)
Q Consensus       179 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~~~~  257 (385)
                                                     ........+.+++.+.|++. .+++... +.++..+...+..+.+.++.
T Consensus       150 -------------------------------~~~~~~~~~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~  197 (351)
T d1ju2a1         150 -------------------------------NSQSWQSVTKTAFLEAGVHPNHGFSLDH-EEGTRITGSTFDNKGTRHAA  197 (351)
T ss_dssp             -------------------------------CCCHHHHHHHHHHHHTTCCCEEEECCBC-CSEEEECEESBCTTSBBCCG
T ss_pred             -------------------------------ccccccccccchhhhhcccccccccccc-ccccccccccccCCCccccc
Confidence                                           01122334455666777765 3445444 56667776677777777777


Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCC-CCeEEEEEEEeC-Ce--EEEEEeCcEEEEcCCCcccHHHHHHcCCCChhh
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPI-SKQAKGVELVKN-GH--KRSVFARKEVIVSSGAFNSPKLLMLSGVGPREH  333 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~~-g~--~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~  333 (385)
                      .+|+.+ +.++|++|++++.|++|+++.. +.+|+||++.+. +.  ...++|+++||||||+|+||+||++|||||.++
T Consensus       198 ~~~l~~-a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~  276 (351)
T d1ju2a1         198 DELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESY  276 (351)
T ss_dssp             GGGGGG-SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHH
T ss_pred             chhhcc-chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHH
Confidence            778865 5678999999999999999743 458999999864 33  445778778999999999999999999999999


Q ss_pred             hhhcCCCcccccc-chhhhhhccCC
Q psy10417        334 LTELGIPVVQDLR-VGDNLMEHVAY  357 (385)
Q Consensus       334 l~~~gi~~~~~~p-vG~~l~dh~~~  357 (385)
                      |+++||+++.|+| ||+|||||+..
T Consensus       277 L~~~gI~~~~dlPgVG~NL~DH~~~  301 (351)
T d1ju2a1         277 LSSLNIPVVLSHPYVGQCLVGKVLD  301 (351)
T ss_dssp             HHHTTCCCSEECTTTTESCBTTTBC
T ss_pred             HHHcCCCeeccCCCcccccccCcCc
Confidence            9999999999999 99999999875

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=1.2e-43  Score=341.14  Aligned_cols=264  Identities=25%  Similarity=0.285  Sum_probs=200.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccc----cchhhhcc-ccCC---CCccccccccCCccccCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFT----DLVLISHY-YQFT---PYNWGFKTTPQKNACLGL   93 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~----~~p~~~~~-~~~~---~~~~~~~~~~~~~~~~~~   93 (385)
                      ..|||||||||++|+++|.+||++ |++|||||+|+......    ..+..... ....   ...|.+...++..    .
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   75 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----W   75 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----T
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----c
Confidence            479999999999999999999998 99999999997543221    11111110 1111   1223333333332    4


Q ss_pred             CCCeeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccccccCcccccc
Q psy10417         94 PNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYHNTNGLLNVEY  173 (385)
Q Consensus        94 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  173 (385)
                      .++.+.+++|++|||+|.+|++++.|+.+.||+.|.   +..|+|++++|||+++|+.++..                  
T Consensus        76 ~~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~---gwp~~~~~l~py~~~~e~~~~~~------------------  134 (360)
T d1kdga1          76 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---GWPSSWTNHAPYTSKLSSRLPST------------------  134 (360)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG---TCCGGGSCCHHHHHHHHHHSCCB------------------
T ss_pred             CCccccccceeeecchhccccccccccchhhheecc---cccccccchhhhhhhhhcccccc------------------
Confidence            566788899999999999999999999999998874   22348999999999999987642                  


Q ss_pred             CCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCC---CCCCCCCCCceeeeeeccccC
Q psy10417        174 SPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTN---IDYNNPNTKIGFSIVQSTIKN  250 (385)
Q Consensus       174 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~---~~~~~~~~~~g~~~~~~~~~~  250 (385)
                                           .+++..++..      ..+....+.+.++..++..   .+.+... ..+++.|...|..
T Consensus       135 ---------------------~~~~~~g~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~  186 (360)
T d1kdga1         135 ---------------------DHPSTDGQRY------LEQSFNVVSQLLKGQGYNQATINDNPNYK-DHVFGYSAFDFLN  186 (360)
T ss_dssp             ---------------------SCCSTTSCCC------SCHHHHHHHHHHHTTTCEECCGGGSTTCC-TTEEEECCBCEET
T ss_pred             ---------------------ceecCCCccc------ccchhHHHHHHHHHhhccCCCcccCCCcc-ccccceeeeeccc
Confidence                                 1222233322      2334455566666666643   2334444 6788888888999


Q ss_pred             CcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC----CeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        251 GRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN----GHKRSVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       251 g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~----g~~~~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      |.|.++..+|+.++.++.|++|++++.|++|+++  +++++||++.+.    +...++.|+|+||||||+++||+||++|
T Consensus       187 G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d--~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~S  264 (360)
T d1kdga1         187 GKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQS  264 (360)
T ss_dssp             TEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             cccccccchhhhhhhcccccccccCcEEEEEEEe--CCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhc
Confidence            9999999999999888999999999999999998  789999999753    4566788878899999999999999999


Q ss_pred             CCCChhhhhhcCCCc
Q psy10417        327 GVGPREHLTELGIPV  341 (385)
Q Consensus       327 gig~~~~l~~~gi~~  341 (385)
                      ||||.++|+..||..
T Consensus       265 GIGp~~~L~~~gi~p  279 (360)
T d1kdga1         265 GIGPTDMIQTVQSNP  279 (360)
T ss_dssp             TBSCHHHHHHHHTSH
T ss_pred             CCCchhhhHHhhcCc
Confidence            999999999999864

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=4.4e-35  Score=281.55  Aligned_cols=255  Identities=21%  Similarity=0.175  Sum_probs=170.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccchhhhccc--cCCCCcc-----------------cc
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDLVLISHYY--QFTPYNW-----------------GF   81 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~p~~~~~~--~~~~~~~-----------------~~   81 (385)
                      .++|||||||||++|+++|.+|+++ |++|||||+|.........+..+...  ......|                 .+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK   83 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCc
Confidence            4689999999999999999999998 99999999997543211111110000  0011111                 11


Q ss_pred             ccccCCccccCCCCCeeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccc
Q psy10417         82 KTTPQKNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTV  161 (385)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~  161 (385)
                      ...+............+.+.+++++||+|.+|++++.|+.+.||+.|...   .+.++++.+||+++|+.++++..    
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~---~~~~~~~~~~y~~~e~~lgv~~~----  156 (370)
T d3coxa1          84 SIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPS---VDSNEMYNKYFPRANTGLGVNNI----  156 (370)
T ss_dssp             BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTT---SCHHHHHHTHHHHHHHHHTCBCC----
T ss_pred             ccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhccccc---CCcHHHHHHHHHHHHHhcCCccc----
Confidence            11111111111233456677889999999999999999999999998543   22478899999999999886421    


Q ss_pred             cccccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCC--C--------
Q psy10417        162 YHNTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNI--D--------  231 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~--------  231 (385)
                                                     +...         .......+..+.+.+.+...|+...  +        
T Consensus       157 -------------------------------~~~~---------~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~  196 (370)
T d3coxa1         157 -------------------------------DQAW---------FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYM  196 (370)
T ss_dssp             -------------------------------CHHH---------HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHH
T ss_pred             -------------------------------cCCc---------ccCCCCccHHHHHHHHHHHcCCcccccccccccccc
Confidence                                           0000         0011123455666677777776531  1        


Q ss_pred             ---CCCCCCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEE--eC-C---eEE
Q psy10417        232 ---YNNPNTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELV--KN-G---HKR  302 (385)
Q Consensus       232 ---~~~~~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~--~~-g---~~~  302 (385)
                         ..+...|..++.|...|..+.+.++..+||.++.++.|++|++++.|++|++++  +++++|.+.  +. +   +.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~~--~~~~~V~v~~~~~~~~~~~~~  274 (370)
T d3coxa1         197 KKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT--GSGYSVTMEQIDEQGNVVATK  274 (370)
T ss_dssp             HHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEEECSEEEEEEEECS--SSSEEEEEEEECTTSCEEEEE
T ss_pred             ccccccccccceecccccccccccccChHHHHHHHHHhCCCcEEEecCcEEEEEEcC--CCeEEEEEEEeCCccceeeEE
Confidence               011112444444555666778888999999888888899999999999999984  455555554  22 2   345


Q ss_pred             EEEeCcEEEEcCCCcccHHHHHHc
Q psy10417        303 SVFARKEVIVSSGAFNSPKLLMLS  326 (385)
Q Consensus       303 ~i~a~k~VVlAaGa~~tp~LL~~S  326 (385)
                      +++| |.||||||+++||+|||+|
T Consensus       275 ~~~A-~~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         275 VVTA-DRVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             EEEE-EEEEECSHHHHHHHHHHHH
T ss_pred             EEEC-CEEEEeeCHHHhHHHHHhC
Confidence            7999 5899999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=8e-33  Score=265.24  Aligned_cols=274  Identities=17%  Similarity=0.149  Sum_probs=176.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCccccc-hhhhccc-cCCCCcccccc--cc----------C---
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRIFTDL-VLISHYY-QFTPYNWGFKT--TP----------Q---   86 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~~~~~-p~~~~~~-~~~~~~~~~~~--~~----------~---   86 (385)
                      +||||||||++|+++|.+||++ |++|+|||+|......... +.+.... ......|....  .+          .   
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            6999999999999999999998 9999999999765321111 1000000 00011111100  00          0   


Q ss_pred             ---CccccCCCCCeeeecCcceecccccccCcEEecCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCcccccc
Q psy10417         87 ---KNACLGLPNNQCLWPQGKGVGGSTIINGNIFTRGFPNDFNEWESLGNTGWSFDDVLKYFKKFERINIPELNSDTVYH  163 (385)
Q Consensus        87 ---~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~d~~~~~~~~~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~  163 (385)
                         ...........+.++++++|||+|.+|++.+.|+.+.+|+.|..   ..|.++++.|||+++|+.+++...      
T Consensus        82 ~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~------  152 (367)
T d1n4wa1          82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHI------  152 (367)
T ss_dssp             CCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCC------
T ss_pred             ccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCC------
Confidence               00000112344567789999999999999999999999999853   233578999999999999886421      


Q ss_pred             cccCccccccCCccccchhhhhhccccCCCCcccCCCcceEeeeCCCCchHHHHHHHHHHHcCCCCCC------------
Q psy10417        164 NTNGLLNVEYSPYKSKLSDIFLKVGLFNSDTVYHNTNGLLNVEYSPYKSKLSDIFLKSSKELGYTNID------------  231 (385)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~------------  231 (385)
                                                   +...         .......+..+.+.+.+...|+....            
T Consensus       153 -----------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  194 (367)
T d1n4wa1         153 -----------------------------DTKW---------FEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQR  194 (367)
T ss_dssp             -----------------------------CHHH---------HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHH
T ss_pred             -----------------------------CCCc---------cccCCCChHHHHHHHHHHHcCcccccccchhhcCCccc
Confidence                                         0000         00011123344555566666654310            


Q ss_pred             -CCCC-CCCceeeeeeccccCCcccchhHHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC----CeEEEEE
Q psy10417        232 -YNNP-NTKIGFSIVQSTIKNGRRMTASKAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN----GHKRSVF  305 (385)
Q Consensus       232 -~~~~-~~~~g~~~~~~~~~~g~r~~~~~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~----g~~~~i~  305 (385)
                       ..+. ..+..+..|.. +..+.|.+...+|+.++.++.|++|+++|.|++|+.++++..+++|++.+.    ++.+++.
T Consensus       195 ~~~g~~~~~~~~g~~~~-~~~~~k~s~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~  273 (367)
T d1n4wa1         195 EAAGEVPKSALATEVIY-GNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEIS  273 (367)
T ss_dssp             HHTTSSCCSGGGTCSTT-CCSSSBCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEE
T ss_pred             ccccccCcccccccccc-cccccccChhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEe
Confidence             0111 11333334443 345678888888998888888899999999999999865667888887753    2346789


Q ss_pred             eCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcccccc-chhhhhhccC
Q psy10417        306 ARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVVQDLR-VGDNLMEHVA  356 (385)
Q Consensus       306 a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~~~~p-vG~~l~dh~~  356 (385)
                      | |.||||||+++||+||++|.-.       .+++..  .+ ||+|+.||..
T Consensus       274 A-k~VVLaAGai~Tp~LLl~S~~~-------g~l~~~--s~~lG~~~~~~l~  315 (367)
T d1n4wa1         274 C-RYLFLGAGSLGSTELLVRARDT-------GTLPNL--NSEVGAGWGCVLG  315 (367)
T ss_dssp             E-EEEEECSHHHHHHHHHHHHHHT-------TSSTTC--CTTTTCCBSSCTT
T ss_pred             c-CEEEEecchhcCHHHHHhCCCC-------CCCCCc--cHhhcCCcccccc
Confidence            9 5899999999999999999311       011111  12 8888887754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.94  E-value=2.2e-27  Score=226.71  Aligned_cols=88  Identities=14%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCCCcc
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGIPVV  342 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi~~~  342 (385)
                      ..+.|++|++++.|++|++++.+++++||++.+  ++++++++| |+||||||+++||+||++||+++........++..
T Consensus       228 ~~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a-~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~  306 (379)
T d2f5va1         228 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPEL  306 (379)
T ss_dssp             EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEE-EEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSS
T ss_pred             hcCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEec-eEEEeccCccCCHHHHhhcccccccccccccCccc
Confidence            446799999999999999987678999999986  478889999 68999999999999999999998777766666554


Q ss_pred             ccccchhhhhhc
Q psy10417        343 QDLRVGDNLMEH  354 (385)
Q Consensus       343 ~~~pvG~~l~dh  354 (385)
                      .+. +|.+.|.+
T Consensus       307 ~~~-~g~h~mG~  317 (379)
T d2f5va1         307 LPS-LGSHRMGF  317 (379)
T ss_dssp             STT-TTBTCBCS
T ss_pred             ccc-cceeeccc
Confidence            332 55554443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.73  E-value=2e-17  Score=153.39  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS-PKLLM  324 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t-p~LL~  324 (385)
                      .+.+.|++|++++.|++|+.++ +++|+||.+.+ .+..+.|+| |.||||+|+|.. +.++.
T Consensus       154 ~a~~~gv~i~~~~~v~~li~~~-~G~V~Gv~~~~~~~~~~~i~A-k~VVlAtGG~~~n~~~~~  214 (308)
T d1y0pa2         154 NAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKA-DAVILATGGFAKNNERVA  214 (308)
T ss_dssp             HHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHHH
T ss_pred             HHHhccceEEEeeccchhhhhc-ccccccccccccccceeEeec-CeEEEccCcccccHHHHH
Confidence            3456799999999999999874 57999999986 456778999 589999999985 44443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.69  E-value=6.5e-17  Score=150.96  Aligned_cols=56  Identities=25%  Similarity=0.310  Sum_probs=46.0

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNSPK  321 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~tp~  321 (385)
                      .+.+.|++|+++++|++|+.++ +++|+||.+.+ .+..+.|+| |.||||+|+|....
T Consensus       161 ~a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~A-k~VIlAtGG~~~n~  217 (322)
T d1d4ca2         161 NAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNN  217 (322)
T ss_dssp             HHHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEEC-SEEEECCCCCTTCH
T ss_pred             HHHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeC-CeEEEcCCCcccCH
Confidence            4455799999999999999874 57999999886 356677999 58999999998543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.67  E-value=2e-16  Score=147.35  Aligned_cols=61  Identities=20%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc-HHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK-NGHKRSVFARKEVIVSSGAFNS-PKLL  323 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~-~g~~~~i~a~k~VVlAaGa~~t-p~LL  323 (385)
                      |...+++.|+++++++.|++|++++ +++|+||.+.+ ++..+.+.| |.||||+|+|.. +.++
T Consensus       154 L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~A-k~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         154 LRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI  216 (317)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEE-EEEEECCCCCTTCHHHH
T ss_pred             HHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEec-cceEEeccccccCHHHH
Confidence            4445567899999999999998865 68999999986 466778999 689999999974 4443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.62  E-value=2.2e-15  Score=137.32  Aligned_cols=61  Identities=26%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGP  330 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~  330 (385)
                      +...+++.|++|+++|+|++|..+  ++++ .|.+.+ |   +++|+ .||+|||+ +++.||..-|+..
T Consensus       156 l~~~a~~~Gv~i~~~~~V~~i~~~--~~~v-~V~t~~-g---~i~a~-~VViAaG~-~s~~l~~~lg~~~  216 (281)
T d2gf3a1         156 YRELAEARGAKVLTHTRVEDFDIS--PDSV-KIETAN-G---SYTAD-KLIVSMGA-WNSKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEC--SSCE-EEEETT-E---EEEEE-EEEECCGG-GHHHHGGGGTEEC
T ss_pred             cccccccccccccCCcEEEEEEEE--CCEE-EEEECC-c---EEEcC-EEEECCCC-cchhhHHhcCCcc
Confidence            444566789999999999999988  4554 344432 3   68995 79999997 7888887777643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.61  E-value=1.1e-16  Score=145.49  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=48.1

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChh
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPRE  332 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~  332 (385)
                      |...+++.|++|+.+++|++|..+   +++++|++.+ |   +++|+ .||+|||+ +|+.|+...|+....
T Consensus       157 l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~-g---~i~a~-~vV~AaG~-~s~~l~~~~G~~~~~  219 (276)
T d1ryia1         157 YVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPS-G---DVWAN-HVVVASGV-WSGMFFKQLGLNNAD  219 (276)
T ss_dssp             HHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETT-E---EEEEE-EEEECCGG-GTHHHHHHTTCCCCS
T ss_pred             HHHHHHHcCCEEecceEEEeEEee---cceEEEecCC-e---EEEcC-EEEECCCc-cHHHHHhhcCCCccc
Confidence            334556789999999999999865   3456676643 2   68995 79999996 789998888876543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.61  E-value=2.4e-15  Score=138.66  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVG  329 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig  329 (385)
                      ..+++.|++|+.+++|++|+.+  ++++++|++.+ |   +++|+ .||+|||+ ++++|+.+.|+.
T Consensus       156 ~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~-g---~i~a~-~VV~aaG~-~s~~l~~~~g~~  214 (305)
T d1pj5a2         156 KRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTAD-G---VIPAD-IVVSCAGF-WGAKIGAMIGMA  214 (305)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETT-E---EEECS-EEEECCGG-GHHHHHHTTTCC
T ss_pred             hhhhcccccccCCceEEEEEEe--CCEEEEEeccc-e---eEECC-EEEEecch-hHHHHHHHcCCc
Confidence            3455689999999999999998  78999998743 3   68995 89999996 689998887764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2e-14  Score=133.39  Aligned_cols=59  Identities=14%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ...+....+..+++|+.++.|++|+.+  ++++.||...+  +|+.+.+.| |.||||+|++..
T Consensus       138 ~~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~~g~~~~~~A-kaVILATGG~g~  198 (311)
T d1kf6a2         138 HTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR  198 (311)
T ss_dssp             HHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEEC-SCEEECCCCCGG
T ss_pred             HhHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcCCCcEEEEEC-CEEEEcCCCccc
Confidence            344555667789999999999999998  78999998875  578888999 589999999863

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=4.7e-15  Score=132.69  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      |...+++.|++|+++++|++|..+  ++++.+|...++.   +++|+ .||+|+|+...|++
T Consensus       116 L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~---~i~a~-~vI~AtGg~S~p~~  171 (251)
T d2i0za1         116 LLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGE---VLETN-HVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCC---EEECS-CEEECCCCSSSGGG
T ss_pred             HHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCC---eEecC-eEEEccCCcccccc
Confidence            333455679999999999999998  6788888775532   68895 79999999888863

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.50  E-value=4.8e-14  Score=131.59  Aligned_cols=53  Identities=11%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      ..+++.|++|+.++.|++++.+  ++++.|+.+.+  +|+...+.| |.||||+|++.
T Consensus       166 ~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~A-k~VvlATGG~~  220 (336)
T d2bs2a2         166 NECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVA-KGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEC-SEEEECCCCCG
T ss_pred             HHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEec-CeEEEeccccc
Confidence            3455679999999999999998  78999998875  578888999 69999999986

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=4.8e-15  Score=131.12  Aligned_cols=41  Identities=32%  Similarity=0.532  Sum_probs=38.1

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .|.++|||||||||++|+++|++||++ |++|+||||.+...
T Consensus         1 ~m~~~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           1 TIDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCC
Confidence            478899999999999999999999999 99999999988764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.44  E-value=4.2e-14  Score=127.04  Aligned_cols=79  Identities=23%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCChhhhhhcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLMLSGVGPREHLTELGI  339 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~~Sgig~~~~l~~~gi  339 (385)
                      .+...+++.|++|++++.|++|...+++..+..+ +..++.  +++|+ .||+|+|+...|++- .+|.| ...++++|+
T Consensus       114 ~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~-~~~~~~--~~~a~-~VIiAtGG~S~p~~G-~~g~g-~~~a~~~~~  187 (253)
T d2gqfa1         114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVRFV-LQVNST--QWQCK-NLIVATGGLSMPGLG-ATPFG-YQIAEQFGI  187 (253)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEE-EEETTE--EEEES-EEEECCCCSSCGGGT-CCSHH-HHHHHHTTC
T ss_pred             HHHHHHHHcCCCeecCceEEEEEeecCCceeEEE-EecCCE--EEEeC-EEEEcCCcccccccC-CCchH-HHHHHhccc
Confidence            3444556779999999999999987544444444 333333  68895 899999999888751 11111 234456666


Q ss_pred             Ccccc
Q psy10417        340 PVVQD  344 (385)
Q Consensus       340 ~~~~~  344 (385)
                      +++..
T Consensus       188 ~i~~~  192 (253)
T d2gqfa1         188 PVIPP  192 (253)
T ss_dssp             CEEEE
T ss_pred             ccccc
Confidence            65433

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=5.7e-13  Score=122.80  Aligned_cols=57  Identities=16%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             hhhccCCCeEEEeCcEEEEEEEcCC-----CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        262 KPIIDRTNLHVIKNSRVVKIIIDPI-----SKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       262 ~~~~~~~g~~i~~~~~V~~i~~~~~-----~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ....++.+++++.++.+++|++++.     .++++||...+  +++.+.+.+ |.||||+|++..
T Consensus       145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~a-k~VilAtGG~~~  208 (305)
T d1chua2         145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGASK  208 (305)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCGG
T ss_pred             HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEee-cceEEeeecccc
Confidence            3345678999999999999999742     24899999875  467777887 699999999863

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=5.3e-12  Score=117.59  Aligned_cols=55  Identities=7%  Similarity=0.125  Sum_probs=43.1

Q ss_pred             hhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy10417        263 PIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFNS  319 (385)
Q Consensus       263 ~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~t  319 (385)
                      ..+++.+++++.++.+++++.++ ++++.|+...+  +|+...+.| +.||||+|++..
T Consensus       151 ~~~~~~~v~~~~~~~~~~l~~~~-~~~~~g~~~~~~~~g~~~~~~a-~~vIlAtGG~~~  207 (330)
T d1neka2         151 QQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKA-RATVLATGGAGR  207 (330)
T ss_dssp             HHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEE-SCEEECCCCCGG
T ss_pred             HHHHhcCCeEEEEEEEEEeeeec-cccceeeeeEEccCCcEEEEec-cEEEEcCCCccc
Confidence            34456799999999999998864 56777766553  577888999 589999999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.30  E-value=1.9e-11  Score=114.43  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             CCCeEEEeCcEEEEEEEcC-CCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy10417        267 RTNLHVIKNSRVVKIIIDP-ISKQAKGVELVK--NGHKRSVFARKEVIVSSGAFN  318 (385)
Q Consensus       267 ~~g~~i~~~~~V~~i~~~~-~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaGa~~  318 (385)
                      ..+..++..+.+++++... ..+.+.++...+  +|+.+.|+| |.||||+|++.
T Consensus       164 ~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~A-k~VILATGG~~  217 (356)
T d1jnra2         164 VGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA-KAVILATGGAT  217 (356)
T ss_dssp             HCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBC
T ss_pred             hcceEEEEEEEEEEeeeecccccceeeeEEEEeecCcEEEeeC-CEEEEcCCCcc
Confidence            3567788888899888643 246777777653  578889999 58999999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.27  E-value=1.7e-12  Score=117.63  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             hhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy10417        261 LKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKLLM  324 (385)
Q Consensus       261 l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~LL~  324 (385)
                      .....++.|++|+++++|++|..+  +++++ |.+.++++..++.|+ .||+|+++..+++||.
T Consensus       225 ~~~l~~~~g~~i~~~~~V~~I~~~--~~~~~-v~~~~~~~~~~~~ad-~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         225 IDALAASLGDAAHVGARVEGLARE--DGGWR-LIIEEHGRRAELSVA-QVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHHHHHHGGGEESSEEEEEEECC----CCE-EEEEETTEEEEEECS-EEEECSCHHHHHHHHT
T ss_pred             HHHHHHHhhcccccCCEEEEEEEe--CCeEE-EEEEcCCeEEEEECC-EEEECCCHHHHHHhcc
Confidence            333444558899999999999887  44444 556667777789996 7999999998999864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=6e-10  Score=97.17  Aligned_cols=50  Identities=16%  Similarity=0.375  Sum_probs=39.7

Q ss_pred             cCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        266 DRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       266 ~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      +..|++|+.. .|++|+.+  ++++.||.+.++.   .++| |.||||+|.|-.-.+
T Consensus        79 ~~~nL~i~q~-~V~dli~e--~~~v~gV~t~~G~---~~~A-kaVILtTGTFL~G~i  128 (230)
T d2cula1          79 GLRPLHLFQA-TATGLLLE--GNRVVGVRTWEGP---PARG-EKVVLAVGSFLGARL  128 (230)
T ss_dssp             TCTTEEEEEC-CEEEEEEE--TTEEEEEEETTSC---CEEC-SEEEECCTTCSSCEE
T ss_pred             hhcCHHHHhc-cceeeEec--ccceeeEEecccc---EEEE-eEEEEccCcceeeEE
Confidence            4678998865 78899888  6899999887654   6889 589999999876443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.89  E-value=1.7e-09  Score=98.90  Aligned_cols=40  Identities=33%  Similarity=0.482  Sum_probs=36.1

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +.++++||||||+|++|+++|++|.++ |.+|+|+|+++..
T Consensus         3 ~p~~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           3 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   42 (298)
T ss_dssp             CCCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCc
Confidence            446789999999999999999999998 9999999998643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=1.6e-08  Score=91.15  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++||||||+|++|+++|++||++.|++|+|||+.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            58999999999999999999997449999999998643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.72  E-value=2.2e-09  Score=101.48  Aligned_cols=40  Identities=38%  Similarity=0.549  Sum_probs=35.5

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhc------CCCceEEEEecCCCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSE------VPSWKVLLIEAGDED   59 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~------~~G~~VlvLE~G~~~   59 (385)
                      +..++|||||||+|+||+++|+.||+      + |++|+||||+...
T Consensus        28 ~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~-Gl~VlllEK~~~p   73 (380)
T d2gmha1          28 RFAEEADVVIVGAGPAGLSAATRLKQLAAQHEK-DLRVCLVEKAAHI   73 (380)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEEECSSSST
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHhhhhhhcC-CCEEEEEcCCCCC
Confidence            44557999999999999999999996      6 9999999999754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.65  E-value=1.7e-07  Score=86.48  Aligned_cols=60  Identities=12%  Similarity=0.068  Sum_probs=41.3

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCCCcccHHH
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN---GHKRSVFARKEVIVSSGAFNSPKL  322 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~---g~~~~i~a~k~VVlAaGa~~tp~L  322 (385)
                      .|+...++..+..|+.+|.|++|..+  +++.. |++.+.   ++.....++ .||+|+|.+..|.+
T Consensus       117 ~yl~~~~~~~~~~I~~~t~V~~v~~~--~~~w~-Vt~~~~~~~~~~~~~~~d-~VI~AtG~~s~p~~  179 (335)
T d2gv8a1         117 EYQRIYAQPLLPFIKLATDVLDIEKK--DGSWV-VTYKGTKAGSPISKDIFD-AVSICNGHYEVPYT  179 (335)
T ss_dssp             HHHHHHHGGGGGGEECSEEEEEEEEE--TTEEE-EEEEESSTTCCEEEEEES-EEEECCCSSSSBCC
T ss_pred             HHHHHHHHHhhhcccCceEEEEEEec--CCEEE-EEEEecCCCCeEEEEEee-EEEEccccccccee
Confidence            35554445456679999999999988  56643 455542   334456785 89999998876643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=6.1e-09  Score=90.80  Aligned_cols=39  Identities=21%  Similarity=0.397  Sum_probs=35.8

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      |.++|||+|||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCc
Confidence            56799999999999999999999998 9999999987643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.61  E-value=6.8e-09  Score=89.99  Aligned_cols=35  Identities=37%  Similarity=0.639  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++|||||||||+||+++|.+|++. |++|+|||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            689999999999999999999998 99999999865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.54  E-value=1.6e-08  Score=87.41  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=34.4

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ++|||||||+|++|+++|.+|++. |.+|+|||+++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCC
Confidence            689999999999999999999998 9999999997654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.9e-08  Score=86.85  Aligned_cols=35  Identities=37%  Similarity=0.628  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            479999999999999999999998 99999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2.4e-08  Score=91.01  Aligned_cols=37  Identities=43%  Similarity=0.638  Sum_probs=34.3

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      |||||||||++||++|++|+++ |.+|+|+|+.+..+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCccc
Confidence            7999999999999999999998 999999999877643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=2.1e-08  Score=87.62  Aligned_cols=36  Identities=28%  Similarity=0.578  Sum_probs=33.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      +||+||||||++|+++|.++|+. |++|+|||+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            79999999999999999999998 9999999997643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.49  E-value=3e-08  Score=86.54  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ..+||+||||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            4579999999999999999999998 9999999997643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.6e-08  Score=88.88  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=34.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +..+|||||||++||+||++|+++ |++|+|||+.+...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCc
Confidence            456899999999999999999999 99999999988764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=4.8e-08  Score=84.31  Aligned_cols=35  Identities=40%  Similarity=0.647  Sum_probs=33.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +||+||||||++|+++|.++++. |++|+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecCCC
Confidence            79999999999999999999998 999999999753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.7e-08  Score=89.70  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=32.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ||||||||++|+++|++|+++ |++|+|||+.+...
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCc
Confidence            899999999999999999999 99999999987654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.41  E-value=5.4e-08  Score=85.05  Aligned_cols=36  Identities=42%  Similarity=0.581  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~~~   60 (385)
                      .||+|||||++|+++|++|+++ |. +|+||||.+...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCC
Confidence            4899999999999999999999 96 699999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.39  E-value=1.9e-06  Score=66.96  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+.+
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~   55 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMD   55 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCChHHHHHHHHHHHc-CCceEEEEeec
Confidence            599999999999999999998 99999999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.6e-08  Score=83.10  Aligned_cols=36  Identities=28%  Similarity=0.624  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+||+||||||++|+.+|.+|++. |++|+|||++..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccCC
Confidence            379999999999999999999998 999999998653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.38  E-value=1.2e-07  Score=83.35  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      |..+.+|||||+|++|+++|++|+++ |.+|+||||+..
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~   40 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLP   40 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            34566899999999999999999999 999999999753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.37  E-value=1.1e-06  Score=69.82  Aligned_cols=47  Identities=13%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      .++.|+++++++.|++|....++++++.|.+.++.   ++.++ .||+|+|
T Consensus        87 ~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~---~i~~D-~vi~a~G  133 (133)
T d1q1ra2          87 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT---RLPAD-LVIAGIG  133 (133)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC---EEECS-EEEECCC
T ss_pred             ccccccEEEeCCeEEEEEEeCCCceEEEEECCCCC---EEECC-EEEEeeC
Confidence            34568999999999999887656788888776643   68996 8999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=8.7e-08  Score=80.21  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .|||||||||++|+.+|.++++. |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe
Confidence            48999999999999999999998 9999999973

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.33  E-value=3.2e-06  Score=65.61  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             ccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        265 IDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       265 ~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      .++.|+++++++.|++|+.++ ++++..+.....+...+++++ .||+|+|
T Consensus        73 l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          73 MKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECS-CEEECCC
T ss_pred             hhccccEEEcCCEEEEEEecC-CceEEEEEEEeCCCCEEEEcC-EEEEEEC
Confidence            345689999999999999875 567777777766777789996 8999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.31  E-value=1.4e-07  Score=85.71  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .+..+|+|||||++|+++|++|+++ |++|+|||+.+...
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~G   66 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPG   66 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSB
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            3445999999999999999999998 99999999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.31  E-value=1.7e-07  Score=83.71  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      .|||||||++|++||++|+++ |++|+|||+.+...
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~G   37 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCc
Confidence            489999999999999999998 99999999987653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.30  E-value=4.2e-06  Score=64.61  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANF-GTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeeccc-ccEEEEEEecce
Confidence            699999999999999999998 999999999763

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.27  E-value=1.5e-07  Score=81.27  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+||+||||+|++|+.+|.++++. |.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            479999999999999999999998 99999999875

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=2e-07  Score=82.75  Aligned_cols=33  Identities=39%  Similarity=0.697  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ||+||||||++|+++|.++|+. |++|+|+|++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            8999999999999999999998 99999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.5e-07  Score=75.79  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             cCCCCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         15 YGNKRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        15 ~~~~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      +..........|+|||||++|+.+|..|+++ |++|+|+|+.+...
T Consensus        35 ~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          35 MPILPAVQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCCSCSSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSC
T ss_pred             cccCCCCCCcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccC
Confidence            3444555667999999999999999999999 99999999977553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.17  E-value=2.1e-06  Score=67.08  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEccc
Confidence            589999999999999999998 999999999763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.15  E-value=6.5e-07  Score=81.85  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=33.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .|+|||||++||++|++|+++ |++|+|+|+.+..+.
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGG   39 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSG
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcC
Confidence            589999999999999999998 999999999887754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=6.5e-07  Score=79.32  Aligned_cols=34  Identities=41%  Similarity=0.654  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGDE   58 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~~   58 (385)
                      +||+|||+|++|+++|..|+++ |. +|+|+||.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCC
Confidence            6999999999999999999998 96 9999999764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.13  E-value=6.2e-07  Score=82.40  Aligned_cols=37  Identities=35%  Similarity=0.480  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhh-----cCCCceEEEEecCCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLS-----EVPSWKVLLIEAGDED   59 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La-----~~~G~~VlvLE~G~~~   59 (385)
                      ..|||+|||+|++|+++|..||     ++ |++|+||||.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~-G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccC-CCcEEEEcCCCCC
Confidence            4699999999999999999997     45 9999999997654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.13  E-value=8.9e-07  Score=78.52  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             CCCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         18 KRLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        18 ~~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .....+||+||||+|++|+.+|..|++. |.+|+|+|+++..
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~l   77 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFL   77 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcc
Confidence            4556799999999999999999999998 9999999997654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=4.8e-07  Score=81.19  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ++||+|||+|++|+++|..|+++ |++|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            57999999999999999999998 99999999964

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=4.6e-06  Score=64.33  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|||+|..|+-+|..|++. |.+|+|+|+++
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~   54 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFD   54 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecc
Confidence            389999999999999999998 99999999975

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.8e-05  Score=61.45  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|||+|..|+-+|..|++. |.+|+|+|+.+
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~   56 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP   56 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCchHHHHHHHHHhh-CcceeEEEecc
Confidence            589999999999999999998 99999999875

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.10  E-value=8.1e-07  Score=76.99  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.||+||||+|+||+++|.++|+..+.+|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            579999999999999999999997234799999753

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=6.4e-07  Score=75.43  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +..||+|||+|++|+.+|..|++. |++|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeecc
Confidence            357999999999999999999998 999999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=7e-07  Score=75.42  Aligned_cols=35  Identities=26%  Similarity=0.241  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .+||+|||||++|+.+|..|++. |++|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecc
Confidence            68999999999999999999998 999999998754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.07  E-value=6e-07  Score=78.41  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~   58 (385)
                      ++||+||||+|+||+++|.++|+. | .+|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~-g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEEecc
Confidence            689999999999999999999997 6 46999998653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.06  E-value=1.1e-06  Score=77.31  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.|+|||+|++|+++|..|+++ |++|+||||.+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            45699999999999999999998 99999999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.8e-05  Score=61.77  Aligned_cols=32  Identities=34%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+-+|..|++. |.+|+++|+++
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~   55 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHD   55 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcC-CcEEEEEeecc
Confidence            589999999999999999998 99999999975

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=2.2e-06  Score=77.86  Aligned_cols=40  Identities=35%  Similarity=0.454  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCchHHHHHhHhhc-CCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSE-VPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~-~~G~~VlvLE~G~~~~   60 (385)
                      ..++||+|||+|++|+++|++|++ ++|++|+|+|+.+...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            447899999999999999999996 3599999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.96  E-value=2.4e-06  Score=71.66  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCce-EEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWK-VLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~-VlvLE~G~~~~   60 (385)
                      -|+|||||++|+.+|..|+++ |++ |+|+||.+...
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARL-GYSDITIFEKQEYVG   41 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCS
T ss_pred             EEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCccc
Confidence            589999999999999999998 985 99999988664

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=2.6e-06  Score=73.73  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCC-------ceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPS-------WKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G-------~~VlvLE~G~~~~   60 (385)
                      +.|+|||||++|++||++|+++ |       ++|+|+|+.+...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCC
Confidence            6899999999999999999997 7       5899999988664

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.84  E-value=5.9e-06  Score=71.72  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      ...-+|+|||||++|+++|.+|+++ |++|+|+|+.+...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~G   85 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIG   85 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccC
Confidence            4567999999999999999999998 99999999987653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.83  E-value=5e-05  Score=58.27  Aligned_cols=46  Identities=11%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      ..++.|++|++++.|++|..++ ++ +..|.+.++ +  .+.++ .||+|+|
T Consensus        71 ~l~~~GI~v~~~~~v~~i~~~~-~g-~~~v~~~~g-~--~i~~D-~Vi~a~G  116 (117)
T d1feca2          71 QLRANGINVRTHENPAKVTKNA-DG-TRHVVFESG-A--EADYD-VVMLAIG  116 (117)
T ss_dssp             HHHHTTEEEEETCCEEEEEECT-TS-CEEEEETTS-C--EEEES-EEEECSC
T ss_pred             HHhhCcEEEEcCCEEEEEEECC-CC-EEEEEECCC-C--EEEcC-EEEEecC
Confidence            3445799999999999998764 23 344555543 3  68896 8999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.80  E-value=3.1e-05  Score=60.37  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .++|||+|..|+=+|..|++. |.+|.++|+++
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~   59 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMD   59 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcC-CCEEEEEEeec
Confidence            589999999999999999998 99999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.74  E-value=7e-06  Score=70.83  Aligned_cols=36  Identities=22%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDEDR   60 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~~   60 (385)
                      -|+|||||+||++||.+|+++ .|.+|+|+|+.+...
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            689999999999999999764 378999999998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00014  Score=57.40  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      .++..|+++++++.|++|..+  ++++. |++.+ |+  .+.++ .||+|+|
T Consensus        92 ~l~~~GV~~~~~~~V~~i~~~--~~~~~-v~l~~-G~--~i~aD-~Vi~A~G  136 (137)
T d1m6ia2          92 KVRREGVKVMPNAIVQSVGVS--SGKLL-IKLKD-GR--KVETD-HIVAAVG  136 (137)
T ss_dssp             HHHTTTCEEECSCCEEEEEEE--TTEEE-EEETT-SC--EEEES-EEEECCC
T ss_pred             HHHhCCcEEEeCCEEEEEEec--CCEEE-EEECC-CC--EEECC-EEEEeec
Confidence            345679999999999999877  44442 54444 43  68996 8999998

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.42  E-value=5.1e-06  Score=71.82  Aligned_cols=32  Identities=28%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|+|||+|++|+++|++|+++ |.+|+++|+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~-G~~v~v~e~~~   33 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDVK   33 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEE
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCceEEeeee
Confidence            389999999999999999998 99888888743

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=5.3e-05  Score=65.45  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             ccEEEECCCchHHHHHhHhhcC--CCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEV--PSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~--~G~~VlvLE~G~   57 (385)
                      .+|||||+|++|+++|.++|+.  .+++|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            3799999999999999988763  268999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.26  E-value=8.4e-05  Score=57.45  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -+++|||||..|+-+|..|++. |.+|+|+|+++..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEeccccc
Confidence            3699999999999999999998 9999999998643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.24  E-value=0.00012  Score=56.45  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .-.++|||+|..|+-+|..|++. |.+|+++|+++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcc-cceEEEEeecccc
Confidence            35799999999999999999998 9999999998743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.18  E-value=0.00016  Score=55.43  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhc-cccceeeehhccc
Confidence            599999999999999999998 9999999998743

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.16  E-value=0.00016  Score=55.89  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      .++|||+|+.|+-+|..|++. |.+|+|+|+.+.
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~   64 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDR   64 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEEECChHHHHHHHHHhhcc-ceEEEEEEecCc
Confidence            799999999999999999998 999999999764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.13  E-value=0.00013  Score=55.69  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      .++|||+|+.|+-+|..|++. |.+|+|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhc-ccceEEEeeeccc
Confidence            599999999999999999998 9999999998754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.00034  Score=66.46  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCCc
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDRI   61 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~~   61 (385)
                      .++++|||||+|.|..=+++|..||+. |++||-||+.++.+.
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGG   43 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCCC
Confidence            478899999999999999999999998 999999999998753

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.77  E-value=0.00035  Score=56.71  Aligned_cols=34  Identities=35%  Similarity=0.642  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      .|||||+|.+|+.+|.+|.+. +..+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            589999999999999999996 2368999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.76  E-value=0.00059  Score=55.77  Aligned_cols=34  Identities=32%  Similarity=0.585  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      ||+|||||++|+-+|..|++. |.+|.|+|+.+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            799999999999999999998 9999998887654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=57.89  Aligned_cols=38  Identities=21%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCchHHHHHhHhhcC-CCceEEEEecCCC
Q psy10417         21 LDEYDFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDE   58 (385)
Q Consensus        21 ~~~~DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~   58 (385)
                      +.++++||||+|.+|+.+|..|.+. +..+|+++++.+.
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            5689999999999999999999875 3457999988654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.48  E-value=0.0011  Score=53.83  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|+|||+|..|..+|.+|+++ |++|+|+||..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            378999999999999999998 99999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.30  E-value=0.0018  Score=49.17  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             cEEEECCCchHHHHHhHhh---cCCCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLS---EVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La---~~~G~~VlvLE~G~~~   59 (385)
                      .++|||||..|+-+|..|+   .+ |.+|+|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~-~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPK-DGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCT-TCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccC-CcEEEEEeccchh
Confidence            6999999999999996554   45 7899999998743

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.30  E-value=0.0016  Score=52.28  Aligned_cols=32  Identities=34%  Similarity=0.631  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|+|||+|++|+-+|..|++  +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEecccc
Confidence            37999999999999999975  679999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.0017  Score=49.80  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .++|||+|..|+-+|..|++. |.+|+|+++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEec
Confidence            599999999999999999998 9999999975

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.18  E-value=0.0015  Score=54.19  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcC-CCceEEEEecCCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEV-PSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~-~G~~VlvLE~G~~~   59 (385)
                      -|+|||+|.+|+.+|..|.+. ++.+|+++|+++..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            389999999999999999884 46789999998654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.14  E-value=0.001  Score=54.42  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.|+|||+|++|+-+|..|.+. |.+|.+++.++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~   38 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEA   38 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCceEEEEEeccc
Confidence            3599999999999999999998 8888888876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.13  E-value=0.0015  Score=53.43  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.|||+|..|+.+|..|+++ |++|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            78999999999999999998 99999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0022  Score=51.33  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|+|||+|..|+.+|..|+++ |++|.++.|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHH
Confidence            379999999999999999998 999999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0046  Score=44.67  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|+|+|.|.+|.++|..|++. |.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcC
Confidence            489999999999999999998 999999997653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.48  E-value=0.0051  Score=47.50  Aligned_cols=32  Identities=34%  Similarity=0.498  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|+|+|+|..|..+|..|.++ |++|+++|+.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCCh
Confidence            379999999999999999998 99999999854

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.44  E-value=0.007  Score=47.99  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             ccEEEE--CCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIV--GAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIV--GsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++||  |+|..|+-+|..|++. |.+|+|+|+.+..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            356665  9999999999999999 9999999987643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.09  E-value=0.0056  Score=47.19  Aligned_cols=32  Identities=22%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|||||.|-.|..+|..|.+. |++|+++|..+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcH
Confidence            489999999999999999998 99999999854

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0094  Score=49.26  Aligned_cols=32  Identities=19%  Similarity=0.445  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..++.+ |++|+++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            478999999999999999998 99999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.19  E-value=0.016  Score=48.00  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.|||.|..|+++|..||++ |.+|+.+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhC-CCcEEEEeCCH
Confidence            78999999999999999998 99999999743

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.01  E-value=0.012  Score=48.19  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|.|||+|..|..+|..++.+ |++|.++|+.+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            389999999999999999998 99999999854

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.16  Score=38.39  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=43.3

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlAaG  315 (385)
                      +...+.+.+|+++++++.|++|.-+  ++++++|++.+  +|+..++.++ .|+++-|
T Consensus        71 ~~~~~~~~~~I~v~~~~~v~~i~G~--~~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          71 LQDKLRSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             HHHHHHTCTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             cccccccccceeEEcCcceEEEEcc--ccceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            4454556689999999999999876  56799999986  4788899996 7988876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.64  E-value=0.025  Score=46.36  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +..--.+.|||+|.-|.++|..|++. |.+|.+..+..
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHc-CCeEEEEEecH
Confidence            33334699999999999999999998 99999998753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.00  E-value=0.037  Score=44.51  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=28.2

Q ss_pred             EEEE-CCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIV-GAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIV-GsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.|| |+|..|.++|..|+++ |++|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~-G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            6788 7799999999999999 99999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.59  E-value=0.031  Score=45.35  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .|.|||+|.-|.++|..|+++ |.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            578999999999999999998 9999998653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.47  E-value=0.048  Score=43.53  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      +...|+|||+|.+|+.+|..+..- |..|.++|..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCc
Confidence            456899999999999999988888 9999999974

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.28  E-value=0.047  Score=43.29  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.|||.|..|.+.|..|.++ |++|++.++..
T Consensus         3 I~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            78999999999999999998 99999999853

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.18  E-value=0.034  Score=43.58  Aligned_cols=29  Identities=21%  Similarity=0.378  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEe
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIE   54 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE   54 (385)
                      -++|||+|..|+.-|..|.++ |.+|+|+-
T Consensus        15 rvLViGgG~va~~ka~~Ll~~-GA~VtVva   43 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPT-GCKLTLVS   43 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGG-TCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            589999999999999999999 99999994

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.09  E-value=0.042  Score=40.40  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=27.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      -+|+|||+|..|+=+|.+|++. +.+|+++-+-
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHh-cCEEEEEEec
Confidence            4899999999999999999997 7777766653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.97  E-value=0.055  Score=43.79  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ...|+|||+|.+|+.+|..+..- |..|.++|...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            45899999999999999888887 99999999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.96  E-value=0.061  Score=39.84  Aligned_cols=31  Identities=26%  Similarity=0.193  Sum_probs=28.5

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEec
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEA   55 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~   55 (385)
                      --|+|||+|..|..-|..|.+. |.+|+|+..
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~   43 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEA-GARLTVNAL   43 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            3689999999999999999998 999999874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.66  E-value=0.061  Score=42.00  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.3

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -+.||| .|..|...|..|.++ |++|.+.++-.
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHc-CCCcEeccccc
Confidence            589999 699999999999998 99999999754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.13  Score=40.34  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      ..+..++++++++.|.+|.-   +    |+.+..+|+++.+.|| .||+|+|
T Consensus       117 ~~~~~gv~~~~~~~v~~i~~---~----gv~~~~~g~e~~i~aD-~Vv~A~G  160 (162)
T d1ps9a2         117 TLLSRGVKMIPGVSYQKIDD---D----GLHVVINGETQVLAVD-NVVICAG  160 (162)
T ss_dssp             HHHHTTCEEECSCEEEEEET---T----EEEEEETTEEEEECCS-EEEECCC
T ss_pred             HHhhCCeEEEeeeEEEEEcC---C----CCEEecCCeEEEEECC-EEEECCC
Confidence            44567899999999999852   2    3555667888899996 8999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.56  E-value=0.47  Score=35.86  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             HHhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEe--CCeEEEEEeCcEEEEc
Q psy10417        258 KAYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVK--NGHKRSVFARKEVIVS  313 (385)
Q Consensus       258 ~~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~--~g~~~~i~a~k~VVlA  313 (385)
                      ..++..+.+.+|+++++++.|.+|.-++..+.+.++.+.+  +++..++.++ .|.+|
T Consensus        73 ~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~d-GvFVa  129 (130)
T d1vdca2          73 KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFA  129 (130)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEEC
T ss_pred             hhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECC-EEEEE
Confidence            3455666678899999999999999874335688999886  4777889996 67765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.31  E-value=0.083  Score=41.53  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~   57 (385)
                      .|+|||||-+|+=+|..|.+. | .+|.+++|-+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~-GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHc-CCcceeEEEeCC
Confidence            599999999999999999998 6 4688998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=90.81  E-value=0.081  Score=41.28  Aligned_cols=37  Identities=14%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCC--ceEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~   57 (385)
                      |....-+.|||+|-.|.++|+.|+.+ |  -.|.++|+-.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhc-CCCcEEEEeeccc
Confidence            45566799999999999999999997 6  4799999753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.13  Score=38.95  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -+|+|||+|-..+-.|..|++- ..+|.++-|++..
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~~   65 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEM   65 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSC
T ss_pred             ceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccccc
Confidence            3899999999999999999997 8899999998765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.1  Score=40.67  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +||+|.|..|..+|..|.+. |.+|+|+|..+
T Consensus         6 iII~G~g~~g~~l~~~L~~~-~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQR-GQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            89999999999999999998 99999999754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.097  Score=41.76  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.1

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-.|+|+|+|.++-++++.|++. |.+|.|+-|-.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSL-DCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhccc-ceEEEeccchH
Confidence            34799999999999999999998 88999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.07  E-value=0.15  Score=38.73  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDEDR   60 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~~   60 (385)
                      =||+|||+|-+.+-.|..|++- ..+|.++-|++...
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~r   70 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFR   70 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCC
T ss_pred             CEEEEEcCchHHHHHHHHHhCC-CCcEEEEEeccccc
Confidence            4899999999999999999997 88999999988653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.16  Score=38.26  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +|+|||+|-.++=.|..|++- ..+|.++-|++.
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~   61 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDG   61 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHhhc-CCcEEEEeeccc
Confidence            899999999999999999997 899999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.62  E-value=0.12  Score=44.80  Aligned_cols=49  Identities=24%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      .+++.|++|+++++|++|..+  +++++.+....++...+++|| .||+|++
T Consensus       244 l~~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~~aD-~VI~A~p  292 (370)
T d2iida1         244 MYRDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSVTAD-YVIVCTT  292 (370)
T ss_dssp             HHHHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEEEES-EEEECSC
T ss_pred             HHHhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEEEee-EEEecCC
Confidence            345678999999999999988  455543322234555678996 7999986

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.30  E-value=0.6  Score=34.64  Aligned_cols=55  Identities=11%  Similarity=0.032  Sum_probs=37.1

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCC-CCeEEEEEEEeC--CeEEEEEeCcEEEEcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPI-SKQAKGVELVKN--GHKRSVFARKEVIVSSG  315 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~-~~~v~GV~~~~~--g~~~~i~a~k~VVlAaG  315 (385)
                      ++....++.|++|++++.|+++...++ ......|.+..+  ++...+.++ .|++|.|
T Consensus        65 ~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D-~vl~AiG  122 (122)
T d1h6va2          65 KIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFN-TVLLAVG  122 (122)
T ss_dssp             HHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEES-EEECCCC
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECC-EEEEEeC
Confidence            454556678999999999999986432 222334555543  445567786 7999987

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.06  E-value=0.13  Score=40.68  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=26.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .|+|+|+|+.|+.++.-+... |.+|+++|+.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhh-cccccccchHH
Confidence            588999999999977655555 99999999764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.94  E-value=0.17  Score=39.89  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |-|||-|..|...|.+|+++ |++|.+.++..
T Consensus         4 Ig~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~   34 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEEEHHHHHHHHHHHHHC-CCeEEEEECch
Confidence            78999999999999999998 99999999853

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.74  E-value=0.22  Score=36.82  Aligned_cols=49  Identities=10%  Similarity=0.214  Sum_probs=34.4

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEc
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVS  313 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlA  313 (385)
                      .++....++.|+++++++.|++|+.+. +++. .|.+.+ |+  ++.++ .||+|
T Consensus        68 ~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~~-~v~~~~-G~--~i~~D-~Vi~A  116 (117)
T d1aoga2          68 EELTKQLTANGIQILTKENPAKVELNA-DGSK-SVTFES-GK--KMDFD-LVMMA  116 (117)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEECT-TSCE-EEEETT-SC--EEEES-EEEEC
T ss_pred             HHHHHHHHhcCcEEEcCCEEEEEEEcC-CCeE-EEEECC-Cc--EEEeC-EEEEe
Confidence            345555667899999999999998764 3443 355544 43  58896 78876

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.55  E-value=0.16  Score=41.28  Aligned_cols=30  Identities=20%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.|||.|..|+++|..|| . |.+|+.+|-..
T Consensus         3 I~ViGlG~vGl~~a~~~a-~-g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-L-QNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-T-TSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-C-CCcEEEEECCH
Confidence            789999999999998776 5 99999999653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.44  E-value=0.19  Score=39.49  Aligned_cols=31  Identities=13%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |-|||-|..|...|.+|+++ |++|.+.++..
T Consensus         3 IgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~   33 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   33 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEehhHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            77999999999999999998 99999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.39  E-value=0.19  Score=39.35  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      +.+..-+.|||+|..|.++|+.|+.. +. +++++|...
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~-~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhC-CCceEEEEEecc
Confidence            44567899999999999999999987 64 799998654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.87  E-value=0.17  Score=38.23  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceE-EEEe
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKV-LLIE   54 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~V-lvLE   54 (385)
                      .++-++|+|+|-+|..++.+|....++++ ..+|
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD   35 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD   35 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence            46789999999999999988866557765 4455

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.17  E-value=0.2  Score=36.95  Aligned_cols=49  Identities=12%  Similarity=0.073  Sum_probs=33.5

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      ++....++.|+++++++.|+++.    ++..  +.....+...+++++ .||+|+|
T Consensus        67 ~l~~~l~~~gV~i~~~~~V~~i~----~~~~--~~~~~~~~~~~i~~D-~vi~A~G  115 (115)
T d1lvla2          67 PVAESLKKLGIALHLGHSVEGYE----NGCL--LANDGKGGQLRLEAD-RVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHTCEEETTCEEEEEE----TTEE--EEECSSSCCCEECCS-CEEECCC
T ss_pred             HHHHHHHhhcceEEcCcEEEEEc----CCeE--EEEEcCCCeEEEEcC-EEEEecC
Confidence            44445567799999999999984    2222  222233444579996 7999998

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.23  Score=39.28  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .|+|+|+|+.|+.++.-+... |. +|+++|+.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHc-CCceEEeccCCH
Confidence            589999999999888766666 77 899999764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.08  E-value=0.014  Score=49.36  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -.++|||+|..|+-+|..|++. |.+|+++++.+..
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEA-NPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhc-CCceEEEEecccc
Confidence            4689999999999999999998 9999999998754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.98  E-value=0.24  Score=39.47  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +..|-|||-|..|...|.+|+++ |++|.+.+|..
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            35789999999999999999998 99999999864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.83  E-value=0.31  Score=38.51  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      ..-.|+|+|+|.++-++++.|.+. |. +|.|+-|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecccH
Confidence            445799999999999999999998 85 799987753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.48  E-value=0.25  Score=39.92  Aligned_cols=32  Identities=19%  Similarity=0.136  Sum_probs=28.4

Q ss_pred             cEEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|.| +|..|..+|..|+++ |.+|+++.|..
T Consensus        25 ~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~   57 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKL   57 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHHHhh-ccchhhcccch
Confidence            577787 699999999999999 99999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.35  E-value=0.35  Score=38.09  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CCCCcccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         19 RLLDEYDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        19 ~~~~~~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      ...+..-|.|||+|..|.++|+.|+.. |.  .++++|...
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~~   55 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGK-SLADELALVDVLE   55 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            334456899999999999999999998 76  799999753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=86.04  E-value=0.29  Score=37.79  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      -+.|||+|..|.++|+.|+.+ |.  .++++|.-+
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            478999999999999999997 65  789998643

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=85.59  E-value=0.23  Score=38.31  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=27.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      -+.|||+|-.|.++|+.|+.. +. +++++|.-.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CcceEEEEeecc
Confidence            378999999999999999987 54 899998644

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=0.21  Score=42.21  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      .+.-|+|||.|..|+.+|..|+.. |. ++.++|...
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCcc
Confidence            356899999999999999999998 86 788888544

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=85.47  E-value=0.24  Score=38.38  Aligned_cols=31  Identities=32%  Similarity=0.453  Sum_probs=26.6

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      +.|||+|..|.++|+.|+.+ |.  .++++|...
T Consensus         4 I~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   36 (146)
T d1hyha1           4 IGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (146)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHhc-CCCceEEEEeccc
Confidence            78999999999999999987 64  788888653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.45  E-value=0.29  Score=38.61  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=27.2

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +.--|+|+|+|..|+.++. +++..|.+|+++++.+.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q-~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTL-ISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHH-HHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHH-Hhhhccccccccccchh
Confidence            3345889999999998664 55434999999998654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.42  E-value=0.24  Score=38.43  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=28.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      ..-|.|||+|-.|.++|+.|+.+ +.  .+.++|.-+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeecc
Confidence            34689999999999999999997 65  799998643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.18  E-value=0.48  Score=37.19  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=28.7

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc--eEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G   56 (385)
                      ..-|.|||+|-.|.++|+.|+.. |.  .++++|..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLK-GLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence            34699999999999999999997 65  79999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.14  E-value=0.3  Score=38.29  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      =.|+|+|+|+.|+.++. +++..|.+|+++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~-~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQ-YARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHH-HHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHH-HHHHcCCccceecchh
Confidence            35899999999998665 5553499999999764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.87  E-value=0.49  Score=35.11  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             hhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCC
Q psy10417        260 YLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVSSG  315 (385)
Q Consensus       260 ~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlAaG  315 (385)
                      ++....+..|+++++++.|+++.    ++.   |.+ .+|+  ++.++ .||+|+|
T Consensus        77 ~~~~~l~~~GV~i~~~~~v~~~~----~~~---v~l-~dg~--~i~~D-~vi~a~G  121 (121)
T d1d7ya2          77 FVARYHAAQGVDLRFERSVTGSV----DGV---VLL-DDGT--RIAAD-MVVVGIG  121 (121)
T ss_dssp             HHHHHHHTTTCEEEESCCEEEEE----TTE---EEE-TTSC--EEECS-EEEECSC
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEe----CCE---EEE-CCCC--EEECC-EEEEeeC
Confidence            45555667899999999999875    232   333 3443  68896 8999987

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.07  E-value=0.37  Score=38.28  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+-|||-|..|...|.+|+++ |++|.+.++..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            478999999999999999998 99999998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.85  E-value=0.53  Score=36.22  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.0

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCc--eEEEEecC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSW--KVLLIEAG   56 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~--~VlvLE~G   56 (385)
                      -+.|||+ |..|.++|+.|+.+ +.  .++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CccceEEEEecc
Confidence            3789995 99999999999997 65  58888864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.63  E-value=0.43  Score=36.67  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~~   58 (385)
                      -+.|||+|-.|.++|+.|+.. +.  .+.++|....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccCC
Confidence            478999999999999999997 65  7999997653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.35  E-value=0.37  Score=37.23  Aligned_cols=31  Identities=23%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             EEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +-|||.|..|..+|..|+++ |+.|++..+..
T Consensus         3 IgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~   33 (152)
T d1i36a2           3 VGFIGFGEVAQTLASRLRSR-GVEVVTSLEGR   33 (152)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCEEEECCTTC
T ss_pred             EEEEcHHHHHHHHHHHHHHC-CCeEEEEcCch
Confidence            78999999999999999998 99999987654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=0.17  Score=39.51  Aligned_cols=26  Identities=27%  Similarity=0.206  Sum_probs=23.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceE
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKV   50 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~V   50 (385)
                      -.|+|||+|..|+-+|..|++. |.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~-G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQP-GEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHc-CCcc
Confidence            4799999999999999999998 7643

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.89  E-value=0.55  Score=36.16  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCc--eEEEEecC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSW--KVLLIEAG   56 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~--~VlvLE~G   56 (385)
                      .|.|||+ |..|.++|+.|+.+ +.  .+.++|.-
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhC-Ccccccccccch
Confidence            4899995 99999999999997 74  88888864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.55  E-value=0.3  Score=40.10  Aligned_cols=34  Identities=12%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .-+|+|||+|..|.=+|.+|+++ +.++.++=+-.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            34799999999999999999998 87877776544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.52  E-value=0.35  Score=38.42  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CcccEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         22 DEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        22 ~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      +.-.++|+|+|.++-++++.|.+. +.+|.|+-|-.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc-CceeeeccchH
Confidence            344699999999999999999986 88999998853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.44  E-value=0.55  Score=36.55  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -|+|+|+|..|+.++..+... |.+|.+++...
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcC-CCeEeccCCCH
Confidence            578899999999866555555 99999998653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.39  E-value=0.45  Score=37.89  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=26.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCc-eEEEEecCC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSW-KVLLIEAGD   57 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~-~VlvLE~G~   57 (385)
                      -=.|+|+|+|+.|+.++.-+... |. +|+++|+.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCH
T ss_pred             CCEEEEECCCccchhheeccccc-cccccccccccc
Confidence            34688999999998766555445 86 899999854

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.36  E-value=0.48  Score=37.15  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             EEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         26 FIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        26 viIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      +.|||.|..|.+.|..|.++ |.  +|...|+..
T Consensus         4 I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~   36 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEccCHHHHHHHHHHHhc-CCCeEEEEEECCh
Confidence            78999999999999999998 75  788888753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.36  E-value=0.47  Score=40.11  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCceEEEEecCCCC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGDED   59 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~~~   59 (385)
                      -|+|+|+ |..|..++.+|.++ |.+|.++.|....
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~   39 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTA   39 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCT
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCcc
Confidence            5899986 99999999999998 9999999997644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.84  E-value=0.53  Score=37.39  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC-ceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS-WKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G-~~VlvLE~G~~   58 (385)
                      =|+|+|+|..|+.++..+... | .+|+++|..+.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceEEEecCcHH
Confidence            489999999999988777776 6 68999998653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=0.54  Score=36.98  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      -++|||-|..|-.+|..|... |.+|+|.|.-+
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~-G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGF-GARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhC-CCeeEeeeccc
Confidence            589999999999999999998 99999999743

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.65  E-value=0.97  Score=33.42  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             HhhhhhccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeCCeEEEEEeCcEEEEc
Q psy10417        259 AYLKPIIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKNGHKRSVFARKEVIVS  313 (385)
Q Consensus       259 ~~l~~~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~g~~~~i~a~k~VVlA  313 (385)
                      .++....+..|+++++++.|+++.-+   +++..| ..+ |+  .+.++ .||+|
T Consensus        76 ~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v-~~d-g~--~i~~D-~vi~a  122 (123)
T d1nhpa2          76 DVLTEEMEANNITIATGETVERYEGD---GRVQKV-VTD-KN--AYDAD-LVVVA  122 (123)
T ss_dssp             HHHHHHHHTTTEEEEESCCEEEEECS---SBCCEE-EES-SC--EEECS-EEEEC
T ss_pred             HHHHHHhhcCCeEEEeCceEEEEEcC---CCEEEE-EeC-CC--EEECC-EEEEE
Confidence            34555566789999999999999754   455445 333 43  68996 78887

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.63  E-value=0.43  Score=36.66  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=27.0

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCc--eEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSW--KVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~--~VlvLE~G~   57 (385)
                      .+.|||+|-.|.++|+.|+.+ |.  .+.++|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CcCceEEEEeccc
Confidence            478999999999999999986 54  689998654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.58  E-value=0.52  Score=39.50  Aligned_cols=30  Identities=23%  Similarity=0.301  Sum_probs=24.9

Q ss_pred             EEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         27 IIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        27 iIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      ||.| ++-.|..+|.+|+++ |.+|+++++..
T Consensus         5 lITGas~GIG~aiA~~la~~-Ga~V~~~~~~~   35 (257)
T d1fjha_           5 VISGCATGIGAATRKVLEAA-GHQIVGIDIRD   35 (257)
T ss_dssp             EEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEeCCCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            4445 466899999999999 99999999754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=0.58  Score=37.82  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             EEEEC-CCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         26 FIIVG-AGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        26 viIVG-sG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      |+|+| +|..|..++.+|.++ |++|.++-|.+
T Consensus         6 IlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~   37 (205)
T d1hdoa_           6 IAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (205)
T ss_dssp             EEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEECCCCHHHHHHHHHHHHC-cCEEEEEEcCh
Confidence            78998 599999999999998 99999998854

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.02  E-value=0.64  Score=36.41  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +.+.=.|+|+|+|..|+.++ +||++.|.+|++++....
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~-qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGI-KLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHH-HHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEeccchHHHHHH-HHhhcccccchhhccchh
Confidence            34444689999999999765 566544999999997543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.92  E-value=0.6  Score=37.03  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             cccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         23 EYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        23 ~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      .-.|+|+|+|.++-++++.|++. | +|.|+-|-
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~-~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKD-N-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHccc-c-ceeeehhh
Confidence            34799999999999999999886 7 99999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.79  E-value=0.64  Score=36.53  Aligned_cols=39  Identities=8%  Similarity=0.157  Sum_probs=29.7

Q ss_pred             CCCcccEEEECCCchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         20 LLDEYDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        20 ~~~~~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      +.+.=-|+|+|+|..|+.++..++...+.+|.++++.+.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            333334888999999999998888874567999987653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.71  E-value=0.57  Score=38.24  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             ccEEEECCCchHHHHHhHhhcCCCceEEEEecC
Q psy10417         24 YDFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAG   56 (385)
Q Consensus        24 ~DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G   56 (385)
                      --|+|.|.|-.|..+|..|.+. |.+|++.|..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~-Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEA-GAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEecch
Confidence            3599999999999999999998 9999998853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=80.59  E-value=0.6  Score=39.78  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             cEEEECC-CchHHHHHhHhhcCCCceEEEEecCCC
Q psy10417         25 DFIIVGA-GVGGCVVAHRLSEVPSWKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGs-G~aG~~~A~~La~~~G~~VlvLE~G~~   58 (385)
                      -|+|+|| |..|..++.+|.++ |++|.++-|...
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~   38 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEV   38 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCc
Confidence            4899996 99999999999998 999999988654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=80.49  E-value=0.73  Score=35.17  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHhHhhcCCC--ceEEEEecCCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPS--WKVLLIEAGDE   58 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G--~~VlvLE~G~~   58 (385)
                      .+.|||+|-.|.++|+.|+.. +  -.+.++|.-+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~-~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEK-QLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCceEEEeccccc
Confidence            478999999999999999997 6  38999997553

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=3.1  Score=30.67  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             hccCCCeEEEeCcEEEEEEEcCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCC
Q psy10417        264 IIDRTNLHVIKNSRVVKIIIDPISKQAKGVELVKN---GHKRSVFARKEVIVSSG  315 (385)
Q Consensus       264 ~~~~~g~~i~~~~~V~~i~~~~~~~~v~GV~~~~~---g~~~~i~a~k~VVlAaG  315 (385)
                      ..+..++.+++++.+.+|.-+  +.++++|++.+.   ++..++.++ .|+++-|
T Consensus        75 ~~~~~~i~~~~~~~v~~i~G~--~~~v~~v~l~~~~~~e~~~~l~~d-gvFv~iG  126 (126)
T d1trba2          75 KVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIG  126 (126)
T ss_dssp             HHHTSSEEEECSCEEEEEEEC--SSSEEEEEEECCTTCCCCEEEECS-EEEECSC
T ss_pred             hhcccceeEecceEEEEEECC--CCceEEEEEEECCCCceEEEEECC-EEEEEeC
Confidence            345689999999999999876  567999999863   234678886 7888866

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.28  E-value=0.71  Score=35.62  Aligned_cols=32  Identities=13%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             cEEEECCCchHHHHHhHhhcCCCceEEEEecCC
Q psy10417         25 DFIIVGAGVGGCVVAHRLSEVPSWKVLLIEAGD   57 (385)
Q Consensus        25 DviIVGsG~aG~~~A~~La~~~G~~VlvLE~G~   57 (385)
                      .+.|||+|.-|.+.|..|.++ |.+|.|.++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~-~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQT-PHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS-SCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhC-CCeEEEEcChH
Confidence            368999999999999999998 99999998753